Query 027250
Match_columns 226
No_of_seqs 296 out of 1507
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 11:29:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027250.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027250hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1au7_A Protein PIT-1, GHF-1; c 100.0 7.6E-30 2.6E-34 205.2 3.3 134 8-154 12-145 (146)
2 2xsd_C POU domain, class 3, tr 99.9 1.5E-29 5.3E-34 207.1 1.7 139 8-157 22-160 (164)
3 3l1p_A POU domain, class 5, tr 99.9 1.5E-29 5.3E-34 205.2 0.9 136 8-154 19-154 (155)
4 3d1n_I POU domain, class 6, tr 99.9 2.5E-28 8.5E-33 197.2 3.2 138 8-153 13-150 (151)
5 1e3o_C Octamer-binding transcr 99.9 2.7E-28 9.2E-33 198.8 2.8 141 9-154 17-159 (160)
6 2dmt_A Homeobox protein BARH-l 99.8 4.8E-20 1.7E-24 133.4 7.5 64 88-156 14-77 (80)
7 1puf_A HOX-1.7, homeobox prote 99.8 6.7E-20 2.3E-24 131.7 7.8 72 81-157 3-74 (77)
8 2da3_A Alpha-fetoprotein enhan 99.8 5.8E-20 2E-24 132.6 6.6 65 87-156 13-77 (80)
9 1nk2_P Homeobox protein VND; h 99.8 1.1E-19 3.8E-24 130.6 7.0 68 86-158 4-71 (77)
10 2dms_A Homeobox protein OTX2; 99.8 1.1E-19 3.9E-24 131.4 7.0 66 89-159 5-70 (80)
11 2kt0_A Nanog, homeobox protein 99.8 1.4E-19 4.7E-24 131.9 6.7 66 87-157 18-83 (84)
12 2vi6_A Homeobox protein nanog; 99.8 6.6E-20 2.3E-24 126.4 4.5 61 90-155 2-62 (62)
13 2dmu_A Homeobox protein goosec 99.8 2.1E-19 7E-24 126.8 7.1 62 90-156 6-67 (70)
14 2dmq_A LIM/homeobox protein LH 99.8 2.3E-19 8E-24 129.6 7.5 66 89-159 5-70 (80)
15 2l7z_A Homeobox protein HOX-A1 99.8 2.4E-19 8.3E-24 127.6 7.2 66 88-158 4-69 (73)
16 2da1_A Alpha-fetoprotein enhan 99.8 1.5E-19 5.2E-24 127.4 6.0 64 89-157 5-68 (70)
17 2cra_A Homeobox protein HOX-B1 99.8 1.1E-19 3.9E-24 128.2 5.1 63 89-156 5-67 (70)
18 2h1k_A IPF-1, pancreatic and d 99.8 1.8E-19 6.1E-24 124.7 6.0 60 91-155 3-62 (63)
19 2da2_A Alpha-fetoprotein enhan 99.8 1.3E-19 4.5E-24 127.7 5.4 64 89-157 5-68 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.8 3.2E-19 1.1E-23 125.2 7.3 64 91-159 2-65 (68)
21 2cue_A Paired box protein PAX6 99.8 2.4E-19 8.1E-24 129.7 6.5 63 90-157 6-68 (80)
22 1ahd_P Antennapedia protein mu 99.8 2.6E-19 8.8E-24 125.8 6.4 63 91-158 2-64 (68)
23 3a01_A Homeodomain-containing 99.8 3.1E-19 1.1E-23 132.9 7.1 68 87-159 13-80 (93)
24 1wh5_A ZF-HD homeobox family p 99.8 1.4E-19 4.8E-24 131.3 5.0 62 87-153 13-78 (80)
25 1ftt_A TTF-1 HD, thyroid trans 99.8 3.7E-19 1.3E-23 124.9 6.9 63 91-158 2-64 (68)
26 2hdd_A Protein (engrailed home 99.8 2.1E-19 7.4E-24 123.4 5.5 58 91-153 3-60 (61)
27 1fjl_A Paired protein; DNA-bin 99.8 3.1E-19 1.1E-23 129.4 6.6 64 88-156 15-78 (81)
28 1ig7_A Homeotic protein MSX-1; 99.8 3.3E-19 1.1E-23 121.1 5.7 57 92-153 1-57 (58)
29 2e1o_A Homeobox protein PRH; D 99.8 5.5E-19 1.9E-23 124.6 6.9 62 90-156 6-67 (70)
30 1yz8_P Pituitary homeobox 2; D 99.8 2.1E-19 7.1E-24 126.1 4.5 64 90-158 2-65 (68)
31 1jgg_A Segmentation protein EV 99.8 4.3E-19 1.5E-23 121.5 5.9 58 92-154 2-59 (60)
32 1b8i_A Ultrabithorax, protein 99.8 3.3E-19 1.1E-23 129.4 5.5 64 88-156 17-80 (81)
33 2m0c_A Homeobox protein arista 99.8 4.9E-19 1.7E-23 126.1 6.3 65 88-157 6-70 (75)
34 2djn_A Homeobox protein DLX-5; 99.8 2.3E-19 7.8E-24 126.6 4.4 63 89-156 5-67 (70)
35 1bw5_A ISL-1HD, insulin gene e 99.8 3E-19 1E-23 124.6 4.7 62 90-156 2-63 (66)
36 1wh7_A ZF-HD homeobox family p 99.8 2.7E-19 9.1E-24 129.9 4.4 61 87-153 13-78 (80)
37 2k40_A Homeobox expressed in E 99.8 6.9E-19 2.4E-23 123.0 6.0 62 91-157 1-62 (67)
38 2r5y_A Homeotic protein sex co 99.8 4.4E-19 1.5E-23 130.5 5.0 63 88-155 25-87 (88)
39 2da4_A Hypothetical protein DK 99.8 8.4E-19 2.9E-23 126.8 6.3 68 87-158 4-74 (80)
40 1uhs_A HOP, homeodomain only p 99.8 1.6E-18 5.6E-23 122.9 7.6 62 92-158 2-64 (72)
41 2hi3_A Homeodomain-only protei 99.8 1.6E-18 5.6E-23 123.2 7.6 63 91-158 2-65 (73)
42 3a02_A Homeobox protein arista 99.7 6.5E-19 2.2E-23 120.6 4.7 58 94-156 2-59 (60)
43 2cuf_A FLJ21616 protein; homeo 99.7 2.2E-18 7.4E-23 128.6 7.3 65 89-158 5-84 (95)
44 3rkq_A Homeobox protein NKX-2. 99.7 1.4E-18 4.9E-23 117.6 5.6 57 91-152 2-58 (58)
45 1b72_A Protein (homeobox prote 99.7 1.5E-18 5.3E-23 129.9 6.2 65 88-157 31-95 (97)
46 3a03_A T-cell leukemia homeobo 99.7 1.9E-18 6.6E-23 116.8 5.3 54 96-154 2-55 (56)
47 1akh_A Protein (mating-type pr 99.7 1.2E-18 4.2E-23 119.4 4.4 59 89-152 3-61 (61)
48 2da5_A Zinc fingers and homeob 99.7 4.6E-18 1.6E-22 121.6 7.3 61 93-158 9-69 (75)
49 2dn0_A Zinc fingers and homeob 99.7 2.7E-18 9.3E-23 123.0 6.1 62 91-157 8-69 (76)
50 3nar_A ZHX1, zinc fingers and 99.7 1.8E-18 6.1E-23 129.4 5.1 65 86-155 20-84 (96)
51 2ly9_A Zinc fingers and homeob 99.7 3.9E-18 1.3E-22 121.4 6.4 63 90-157 5-67 (74)
52 2da6_A Hepatocyte nuclear fact 99.7 7.2E-18 2.4E-22 127.3 6.9 70 88-158 3-89 (102)
53 2ecc_A Homeobox and leucine zi 99.7 4.3E-18 1.5E-22 122.2 5.4 59 94-157 6-64 (76)
54 1puf_B PRE-B-cell leukemia tra 99.7 9.5E-18 3.3E-22 119.1 6.8 63 91-158 1-66 (73)
55 1x2n_A Homeobox protein pknox1 99.7 1.1E-17 3.9E-22 118.7 7.1 64 89-157 5-71 (73)
56 1du6_A PBX1, homeobox protein 99.7 7.4E-18 2.5E-22 116.7 3.5 58 91-153 3-63 (64)
57 2ecb_A Zinc fingers and homeob 99.7 2.9E-17 9.8E-22 121.4 6.5 57 97-158 17-73 (89)
58 1b72_B Protein (PBX1); homeodo 99.7 2.6E-17 8.8E-22 120.6 6.2 61 92-157 2-65 (87)
59 2dmn_A Homeobox protein TGIF2L 99.7 5.4E-17 1.9E-21 118.3 7.8 65 90-158 6-72 (83)
60 1wi3_A DNA-binding protein SAT 99.7 2E-17 6.8E-22 115.5 5.1 59 88-151 4-63 (71)
61 1k61_A Mating-type protein alp 99.7 2.6E-17 8.7E-22 112.5 5.5 55 95-154 2-59 (60)
62 2dmp_A Zinc fingers and homeob 99.7 7.3E-17 2.5E-21 119.1 8.4 58 97-159 19-76 (89)
63 1lfb_A Liver transcription fac 99.7 8.7E-18 3E-22 126.5 3.0 70 88-158 6-92 (99)
64 2cqx_A LAG1 longevity assuranc 99.7 9.9E-18 3.4E-22 119.2 2.8 59 92-155 9-68 (72)
65 2l9r_A Homeobox protein NKX-3. 99.7 2.6E-17 9E-22 116.1 3.9 57 96-157 9-65 (69)
66 1mnm_C Protein (MAT alpha-2 tr 99.7 8.1E-17 2.8E-21 118.1 5.9 59 90-153 26-87 (87)
67 3nau_A Zinc fingers and homeob 99.6 1E-16 3.5E-21 111.6 5.1 53 98-155 11-63 (66)
68 1le8_B Mating-type protein alp 99.6 1.1E-16 3.6E-21 116.6 5.3 57 93-154 4-63 (83)
69 2e19_A Transcription factor 8; 99.6 7.6E-17 2.6E-21 112.1 3.8 54 95-153 7-60 (64)
70 1x2m_A LAG1 longevity assuranc 99.6 8.9E-17 3.1E-21 111.7 3.3 50 100-154 9-59 (64)
71 1ic8_A Hepatocyte nuclear fact 99.6 1.5E-16 5E-21 133.2 1.7 62 87-153 111-193 (194)
72 2d5v_A Hepatocyte nuclear fact 99.6 4.1E-16 1.4E-20 126.9 4.0 65 88-157 94-158 (164)
73 3k2a_A Homeobox protein MEIS2; 99.5 5.3E-15 1.8E-19 103.5 4.5 56 97-157 4-62 (67)
74 2h8r_A Hepatocyte nuclear fact 99.4 6.8E-14 2.3E-18 118.7 4.6 65 86-151 137-218 (221)
75 2da7_A Zinc finger homeobox pr 99.4 1.9E-13 6.5E-18 95.9 4.3 46 100-150 14-59 (71)
76 2lk2_A Homeobox protein TGIF1; 99.3 1.6E-12 5.5E-17 95.6 4.5 56 96-156 10-68 (89)
77 1mh3_A Maltose binding-A1 home 99.2 2.8E-12 9.7E-17 115.7 2.8 56 92-152 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 1.8E-09 6E-14 66.7 0.4 21 138-158 1-21 (37)
79 2ys9_A Homeobox and leucine zi 93.8 0.031 1E-06 38.8 2.3 38 104-146 19-56 (70)
80 2glo_A Brinker CG9653-PA; prot 65.8 5.3 0.00018 25.5 3.1 46 95-146 3-48 (59)
81 1hlv_A CENP-B, major centromer 63.8 11 0.00036 27.6 4.9 50 94-151 4-53 (131)
82 2elh_A CG11849-PA, LD40883P; s 62.3 8.1 0.00028 26.7 3.8 45 92-146 17-61 (87)
83 3hug_A RNA polymerase sigma fa 57.3 12 0.0004 25.9 3.9 47 98-154 38-84 (92)
84 1tc3_C Protein (TC3 transposas 51.6 12 0.00041 21.7 2.8 40 97-146 5-44 (51)
85 2o8x_A Probable RNA polymerase 51.4 14 0.00049 23.5 3.4 46 98-153 16-61 (70)
86 2rgt_A Fusion of LIM/homeobox 46.0 0.3 1E-05 38.6 -6.9 30 89-119 134-163 (169)
87 1jko_C HIN recombinase, DNA-in 43.1 7.1 0.00024 23.2 0.7 41 98-148 6-46 (52)
88 1s7o_A Hypothetical UPF0122 pr 41.6 25 0.00087 25.6 3.7 47 98-154 23-69 (113)
89 2qko_A Possible transcriptiona 40.5 13 0.00045 28.7 2.1 43 103-151 34-76 (215)
90 3mzy_A RNA polymerase sigma-H 39.7 26 0.0009 25.6 3.7 47 97-154 109-155 (164)
91 1ku3_A Sigma factor SIGA; heli 36.7 29 0.001 22.6 3.1 46 97-152 10-59 (73)
92 1p4w_A RCSB; solution structur 35.8 45 0.0015 23.6 4.2 45 95-150 32-76 (99)
93 3c57_A Two component transcrip 35.3 40 0.0014 23.4 3.9 46 97-153 27-72 (95)
94 2p7v_B Sigma-70, RNA polymeras 33.6 24 0.00082 22.7 2.2 49 97-151 5-53 (68)
95 1fse_A GERE; helix-turn-helix 33.6 53 0.0018 20.8 4.0 45 96-151 10-54 (74)
96 1xsv_A Hypothetical UPF0122 pr 32.5 34 0.0012 24.8 3.1 48 98-155 26-73 (113)
97 1fi6_A EH domain protein REPS1 31.9 37 0.0013 23.0 3.1 46 96-145 1-50 (92)
98 2x7l_M HIV REV; nuclear export 31.6 32 0.0011 25.7 2.7 35 105-158 17-51 (115)
99 1je8_A Nitrate/nitrite respons 31.0 44 0.0015 22.4 3.4 44 96-150 20-63 (82)
100 2q24_A Putative TETR family tr 30.2 17 0.00057 27.6 1.1 42 101-149 19-60 (194)
101 1tty_A Sigma-A, RNA polymerase 29.7 33 0.0011 23.3 2.5 45 97-151 18-66 (87)
102 1or7_A Sigma-24, RNA polymeras 28.3 49 0.0017 25.1 3.6 48 98-155 141-188 (194)
103 2rnj_A Response regulator prot 27.2 49 0.0017 22.5 3.1 43 97-150 29-71 (91)
104 2i10_A Putative TETR transcrip 26.3 36 0.0012 26.0 2.5 45 101-151 15-59 (202)
105 2rn7_A IS629 ORFA; helix, all 25.2 79 0.0027 22.0 4.0 46 96-145 5-52 (108)
106 2jn6_A Protein CGL2762, transp 25.0 76 0.0026 21.6 3.8 40 96-145 4-45 (97)
107 3q0w_A HTH-type transcriptiona 24.6 25 0.00085 27.7 1.2 39 105-149 52-90 (236)
108 1rp3_A RNA polymerase sigma fa 24.0 62 0.0021 25.2 3.5 48 98-155 188-235 (239)
109 1u78_A TC3 transposase, transp 23.7 57 0.0019 23.4 3.0 42 96-147 5-46 (141)
110 1x3u_A Transcriptional regulat 23.1 45 0.0016 21.6 2.2 42 98-150 17-58 (79)
111 3ccy_A Putative TETR-family tr 23.1 44 0.0015 25.3 2.4 40 103-148 20-59 (203)
112 3fiw_A Putative TETR-family tr 22.6 35 0.0012 26.8 1.8 53 93-151 20-73 (211)
113 3lph_A Protein REV; helix-loop 22.2 47 0.0016 22.7 2.0 34 105-157 20-53 (72)
114 3kz9_A SMCR; transcriptional r 22.2 43 0.0015 25.0 2.1 38 105-148 25-62 (206)
115 2fq4_A Transcriptional regulat 22.1 40 0.0014 25.4 1.9 41 105-151 20-60 (192)
116 3on2_A Probable transcriptiona 21.9 39 0.0013 25.1 1.8 41 103-149 18-58 (199)
117 3ulq_B Transcriptional regulat 21.9 1.1E+02 0.0037 21.0 4.1 43 93-146 25-67 (90)
118 2qwt_A Transcriptional regulat 21.7 32 0.0011 26.1 1.3 38 104-148 20-57 (196)
119 2iai_A Putative transcriptiona 21.6 52 0.0018 25.6 2.6 42 102-149 35-76 (230)
120 3dcf_A Transcriptional regulat 21.2 37 0.0013 25.7 1.6 40 104-149 38-77 (218)
121 3g1o_A Transcriptional regulat 21.0 42 0.0014 26.6 1.9 41 103-149 49-89 (255)
122 2v57_A TETR family transcripti 20.9 48 0.0017 24.5 2.2 28 118-149 31-58 (190)
123 1iuf_A Centromere ABP1 protein 20.9 2E+02 0.0068 21.3 5.7 52 92-147 6-60 (144)
No 1
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.95 E-value=7.6e-30 Score=205.17 Aligned_cols=134 Identities=20% Similarity=0.263 Sum_probs=112.6
Q ss_pred CcccchhhhhhhccCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCcccCCC
Q 027250 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (226)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~ 87 (226)
|++.++..+..|+|||.++|.+||+++|+++||+|+++.+++.++|+..+.+.+|+.+.+...+. +....+.
T Consensus 12 ~k~~ri~lg~tQ~~vg~al~~l~g~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~--------~~~~~~~ 83 (146)
T 1au7_A 12 FKVRRIKLGYTQTNVGEALAAVHGSEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL--------YNEKVGA 83 (146)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTTSSCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC-------------------
T ss_pred HHHHHHhccCcHHhhhhhcchhccCCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCc--------cCcccCC
Confidence 45667888999999999999999999999999999999999999999999999999998653221 1112233
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
.+++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||+
T Consensus 84 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 84 NERKRKRRTTISIAAKDALERHFGEH-SKPSSQEIMRMAEEL----NLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -----CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCcCccHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCChhhchhhhHhhhhhhhcc
Confidence 45678899999999999999999999 999999999999999 999999999999999999985
No 2
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.95 E-value=1.5e-29 Score=207.05 Aligned_cols=139 Identities=19% Similarity=0.239 Sum_probs=109.6
Q ss_pred CcccchhhhhhhccCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCcccCCC
Q 027250 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (226)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~ 87 (226)
|++.++..+..|+|||.++|.+||+++++++||+|+++..++.++|+..+.+.+|+.+++...+... . ......
T Consensus 22 fk~~ri~lg~tQ~~vg~alg~l~g~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~~----~--~~~~~~ 95 (164)
T 2xsd_C 22 FKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSPT----N--LDKIAA 95 (164)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC-------------------
T ss_pred HHHHHhhcCCcccccccccccccCCCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCCc----c--cccccc
Confidence 4567788899999999999999999999999999999999999999999999999999875433211 0 111223
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
.+++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||..+.
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~ 160 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKC-PKPSAHEITGLADSL----QLEKEVVRVWFCNRRQKEKRMTPA 160 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTBSCC-
T ss_pred cccCCCCceeccHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CCChhhhhhhhHHhhHHHhhccCC
Confidence 45678899999999999999999999 999999999999999 999999999999999999997654
No 3
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.95 E-value=1.5e-29 Score=205.21 Aligned_cols=136 Identities=18% Similarity=0.168 Sum_probs=115.4
Q ss_pred CcccchhhhhhhccCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCcccCCC
Q 027250 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (226)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~ 87 (226)
|.+..+..+..|+|||.++|.+||++||+++||+|++...+++++|+..+.+.+|+.+.+...... +...... .
T Consensus 19 fk~~ri~lg~tq~~vg~al~~l~G~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~~-~~~~~~~-----~ 92 (155)
T 3l1p_A 19 LKQKRITLGYTQADVGLTLGVLFGKVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENLQ-EISKSET-----L 92 (155)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHHH-HSSCC--------
T ss_pred HHhhhheecccHHHHHHHHHhhcCcccccccccccccccCChhhHhhcchHHHHHhhhhhcccCcc-ccccccc-----c
Confidence 456677889999999999999999999999999999999999999999999999998876421111 0011111 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
..+++|.|+.|+..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||.
T Consensus 93 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yps~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 93 VQARKRKRTSIENRVRWSLETMFLKS-PKPSLQQITHIANQL----GLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCCSCCCCCCCCHHHHHHHHTTTTTC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHC-
T ss_pred ccCCCCCCcccCHHHHHHHHHHHccC-CCCCHHHHHHHHHHc----CCChhheeeccccccccccCC
Confidence 13577889999999999999999999 999999999999999 999999999999999999974
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.94 E-value=2.5e-28 Score=197.15 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=117.8
Q ss_pred CcccchhhhhhhccCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCcccCCC
Q 027250 8 FQQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMRMGNPYFDPFVASGS 87 (226)
Q Consensus 8 ~~~~~~~~~~~q~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~ic~q~~~~~~~l~~~~~~~~~~~~~~~~~p~~~~~~ 87 (226)
|++.++..+..|+|||.++|.+||+++|+++||+|++...++.++|+..+.+.+|+.+.+........ ... ....+.
T Consensus 13 f~~~ri~lg~tQ~~vg~al~~l~g~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~--~~~-~~~~~~ 89 (151)
T 3d1n_I 13 FKIRRLSLGLTQTQVGQAMTATEGPAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQ--NLM-EFVGGE 89 (151)
T ss_dssp HHHHHHTTTCCHHHHHHHHSCSSSCCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCST--THH-HHHCSS
T ss_pred HHHHHhhcCCCcccHHHhhccccCCCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcc--ccc-ccCCCC
Confidence 45677888999999999999999999999999999999999999999999999999987653211111 001 111233
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
.+++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKN-PLPTGQEITEMAKEL----NYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhHHHHHHHHhccCC
Confidence 45678899999999999999999999 999999999999999 99999999999999999986
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.94 E-value=2.7e-28 Score=198.82 Aligned_cols=141 Identities=15% Similarity=0.126 Sum_probs=109.0
Q ss_pred cccchhhhhhhccCCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccCC--CCCCCCCCcccCC
Q 027250 9 QQGGEMERQFQQDGGDTSNGLCVKVMTDEQMELLRKQIAVYAMICEQLVQMHKVFSAQNEIAGMR--MGNPYFDPFVASG 86 (226)
Q Consensus 9 ~~~~~~~~~~q~~~~~~~g~~~~~~~t~~~~~~lr~qi~~~~~ic~q~~~~~~~l~~~~~~~~~~--~~~~~~~p~~~~~ 86 (226)
.+.+...+..|+++|.++|.+||+++++++|++|+++..++.++|+..+.+.+|+.+.....+.. .+.+.........
T Consensus 17 k~~r~~lg~tQ~~vg~~lg~l~g~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~~~~~~ 96 (160)
T 1e3o_C 17 KQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIE 96 (160)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHSCCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHcCCCHHHHHHhhccccCCCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcCCCCCC
Confidence 34456778899999999999999999999999999999999999999999999999886432211 1111111100112
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
+..++||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++++|+|||||||+|+||.
T Consensus 97 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 97 GLSRRRKKRTSIETNIRVALEKSFMEN-QKPTSEDITLIAEQL----NMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCcCccccCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHH----CCChHHhhHhhHHhhhhhhcc
Confidence 344678899999999999999999999 999999999999999 999999999999999999985
No 6
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-20 Score=133.40 Aligned_cols=64 Identities=28% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
.++.++.|+.|+..|+.+||..|..+ +||+..++..||..| +|++.+|+|||||||+|+||...
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQ-KYLSTPDRIDLAESL----GLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHeeeccHHHHHHhhcccC
Confidence 45678899999999999999999999 999999999999999 99999999999999999998654
No 7
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.80 E-value=6.7e-20 Score=131.72 Aligned_cols=72 Identities=24% Similarity=0.271 Sum_probs=64.9
Q ss_pred CcccCCCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 81 PFVASGSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 81 p~~~~~~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
|.+...+.+..++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 3 p~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 3 PAANWLHARSTRKKRCPYTKHQTLELEKEFLFN-MYLTRDRRYEVARLL----NLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp TTTTSCCCCTTSCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCCCCCCCCCCCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhhhh
Confidence 444455566788999999999999999999999 999999999999999 999999999999999999997653
No 8
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=5.8e-20 Score=132.60 Aligned_cols=65 Identities=31% Similarity=0.456 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
...+.+|.|+.|+.+|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+||...
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLD-SNPTRKMLDHIAHEV----GLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhHHHhHHHHHhHhhhcc
Confidence 345678899999999999999999999 999999999999999 99999999999999999998654
No 9
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.79 E-value=1.1e-19 Score=130.58 Aligned_cols=68 Identities=25% Similarity=0.308 Sum_probs=62.4
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 86 ~~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
+..++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 4 GLPNKKRKRRVLFTKAQTYELERRFRQQ-RYLSAPEREHLASLI----RLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCSCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHhhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhcchhhhhccc
Confidence 3455678899999999999999999999 999999999999999 9999999999999999999877653
No 10
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=1.1e-19 Score=131.36 Aligned_cols=66 Identities=29% Similarity=0.454 Sum_probs=61.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCCC
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~~ 159 (226)
++.+|.|+.|+.+|+.+||..|..+ +||+..++..||..| +|++.+|+|||||||+|+|+..+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~rk~~~~~~ 70 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKT-RYPDIFMREEVALKI----NLPESRVQVWFKNRRAKCRQQQQQQQ 70 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHTHHHHTTCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHhhhhhHHHhHHhhHHHHccC
Confidence 4578899999999999999999999 999999999999999 99999999999999999999876653
No 11
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=131.91 Aligned_cols=66 Identities=26% Similarity=0.350 Sum_probs=61.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
...+.+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+||.++.
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~k~ 83 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQ-KYLSLQQMQELSNIL----NLSYKQVKTWFQNQRMKSKRWQKN 83 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHTTTSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHc----CCCHHHHHHHHHHHHHHHHHHhhc
Confidence 445678899999999999999999999 999999999999999 999999999999999999987653
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.78 E-value=6.6e-20 Score=126.38 Aligned_cols=61 Identities=30% Similarity=0.393 Sum_probs=53.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
+.++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kr~q 62 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQ-KYLSLQQMQELSSIL----NLSYKQVKTWFQNQRMKCKRWQ 62 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCGGGC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhhHHhHHhhcchhhcC
Confidence 367889999999999999999999 999999999999999 9999999999999999999864
No 13
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.1e-19 Score=126.78 Aligned_cols=62 Identities=29% Similarity=0.482 Sum_probs=58.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
..++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+...
T Consensus 6 ~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 6 SGRRHRTIFTDEQLEALENLFQET-KYPDVGTREQLARKV----HLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp SSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CCCHHHeehccccccccccccCC
Confidence 467889999999999999999999 999999999999999 99999999999999999998655
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.3e-19 Score=129.57 Aligned_cols=66 Identities=18% Similarity=0.321 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCCC
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~~ 159 (226)
.+.+|.|+.|+.+|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|++.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~~~ 70 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAIN-HNPDAKDLKQLAQKT----GLTKRVLQVWFQNARAKFRRNLLRQE 70 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHhhHccHHHHHHHHHHHHHHh
Confidence 3478889999999999999999999 999999999999999 99999999999999999999876653
No 15
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.78 E-value=2.4e-19 Score=127.59 Aligned_cols=66 Identities=30% Similarity=0.353 Sum_probs=61.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
..+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATN-KFITKDKRRRISATT----NLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHT-SCCCHHHHHHHHHHH----TSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhC-CCcCHHHHHHHHHHH----CCCHHHHHHHHHHHhHHHHHHhccc
Confidence 34578899999999999999999999 999999999999999 9999999999999999999976554
No 16
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.5e-19 Score=127.37 Aligned_cols=64 Identities=20% Similarity=0.404 Sum_probs=59.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
++.++.|+.|+.+|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDIN-NSPSEEQIKEMADKS----GLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHh----CCCHHHHHHHhhhhhHHHhhhccc
Confidence 3578899999999999999999999 999999999999999 999999999999999999987653
No 17
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=1.1e-19 Score=128.19 Aligned_cols=63 Identities=29% Similarity=0.400 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
.+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAAN-KFITKDKRRKISAAT----SLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CCCHHHhhHhhHhHHHHhcccCC
Confidence 3578889999999999999999999 999999999999999 99999999999999999998654
No 18
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.78 E-value=1.8e-19 Score=124.66 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=56.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 3 NKRTRTAYTRAQLLELEKEFLFN-KYISRPRRVELAVML----NLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp --CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHHHHhhhhhhhhhc
Confidence 67889999999999999999999 999999999999999 9999999999999999999863
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-19 Score=127.68 Aligned_cols=64 Identities=20% Similarity=0.410 Sum_probs=59.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
.+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDAN-AYPKDDEFEQLSNLL----NLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHhHHhhHhhhHHHhhcccc
Confidence 4578899999999999999999999 999999999999999 999999999999999999986543
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=3.2e-19 Score=125.22 Aligned_cols=64 Identities=28% Similarity=0.383 Sum_probs=60.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCCC
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~~ 159 (226)
+++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQG-RYLTAPRLADLSAKL----ALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 57889999999999999999999 999999999999999 99999999999999999999887653
No 21
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.4e-19 Score=129.74 Aligned_cols=63 Identities=25% Similarity=0.448 Sum_probs=59.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
..+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 6 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 6 SGQRNRTSFTQEQIEALEKEFERT-HYPDVFARERLAAKI----DLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp SSCCCCCCSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHHHHHHHHHHHHHhhh
Confidence 478889999999999999999999 999999999999999 999999999999999999997765
No 22
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=2.6e-19 Score=125.80 Aligned_cols=63 Identities=25% Similarity=0.338 Sum_probs=59.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
++|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHC-SSCCTTHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHhhhhHHhHHHHhHHhHhcccc
Confidence 57889999999999999999999 999999999999999 9999999999999999999977654
No 23
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.78 E-value=3.1e-19 Score=132.86 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCCC
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~~ 159 (226)
..++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+......
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kr~~~~~~ 80 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQ-KYLASAERAALARGL----KMTDAQVKTWFQNRRTKWRRQTAEER 80 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHTT----TCCHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCChhhcccccHhhhhhhhhhhHHHH
Confidence 345678899999999999999999999 999999999999999 99999999999999999999887653
No 24
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.77 E-value=1.4e-19 Score=131.30 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh----cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDE----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~----~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
+.++++|.||.|+.+|+.+||..|+. + +||+..+|++||..| ||++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~-~yp~~~~r~~La~~l----gL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 13 GGGIRKRHRTKFTAEQKERMLALAERIGWRI-QRQDDEVIQRFCQET----GVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCCSCCCSCCCCHHHHHHHHHHHHHHTSCC-CTTTHHHHHHHHHHS----CCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHHhccCcC-CCcCHHHHHHHHHHh----CCCcccccCCccccCcCCCC
Confidence 34567889999999999999999999 8 999999999999999 99999999999999999875
No 25
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.77 E-value=3.7e-19 Score=124.93 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=59.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
+++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQ-KYLSAPEREHLASMI----HLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 57889999999999999999999 999999999999999 9999999999999999999987654
No 26
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.77 E-value=2.1e-19 Score=123.40 Aligned_cols=58 Identities=28% Similarity=0.511 Sum_probs=53.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
.+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNEN-RYLTERRRQQLSSEL----GLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHhhhhcccccc
Confidence 57889999999999999999999 999999999999999 99999999999999999987
No 27
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.77 E-value=3.1e-19 Score=129.37 Aligned_cols=64 Identities=28% Similarity=0.530 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
.++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|++..
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERT-QYPDIYTREELAQRT----NLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhhhhhhhcc
Confidence 45678899999999999999999999 999999999999999 99999999999999999999764
No 28
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.77 E-value=3.3e-19 Score=121.12 Aligned_cols=57 Identities=35% Similarity=0.466 Sum_probs=55.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
|+.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQK-QYLSIAERAEFSSSL----SLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhhhhhHhhhhhcc
Confidence 5789999999999999999999 999999999999999 99999999999999999987
No 29
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.77 E-value=5.5e-19 Score=124.63 Aligned_cols=62 Identities=26% Similarity=0.318 Sum_probs=58.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
..++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+...
T Consensus 6 ~~~r~R~~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 6 SGKGGQVRFSNDQTIELEKKFETQ-KYLSPPERKRLAKML----QLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CCCHHHhhHhhHhhHhhcCCCCC
Confidence 467789999999999999999999 999999999999999 99999999999999999999765
No 30
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.77 E-value=2.1e-19 Score=126.13 Aligned_cols=64 Identities=28% Similarity=0.436 Sum_probs=60.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~~~~ 65 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRN-RYPDMSTREEIAVWT----NLTEARVRVWFKNRRAKWRKREEFI 65 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTC-SSCCTTTTTHHHHHT----TSCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHcc-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHHHhhcc
Confidence 467889999999999999999999 999999999999999 9999999999999999999987654
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.77 E-value=4.3e-19 Score=121.50 Aligned_cols=58 Identities=31% Similarity=0.436 Sum_probs=55.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|++
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKE-NYVSRPRRCELAAQL----NLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH----CcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999 999999999999999 999999999999999999985
No 32
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.76 E-value=3.3e-19 Score=129.41 Aligned_cols=64 Identities=30% Similarity=0.403 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
.+..+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTN-HYLTRRRRIEMAHAL----SLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHhhhhhhhhcc
Confidence 34578899999999999999999999 999999999999999 99999999999999999998653
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.76 E-value=4.9e-19 Score=126.10 Aligned_cols=65 Identities=29% Similarity=0.438 Sum_probs=60.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
.+++++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+..+.
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKT-HYPDVYAREQLAMRT----DLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CCCHHHHHHHhHHHHHHHHHHHhh
Confidence 34578889999999999999999999 999999999999999 999999999999999999987655
No 34
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=126.61 Aligned_cols=63 Identities=22% Similarity=0.370 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
.+.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+||...
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKT-QYLALPERAELAASL----GLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHS----SCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHh----CCCHHHHHHHHHHHhhhhcccCC
Confidence 3478889999999999999999999 999999999999999 99999999999999999988653
No 35
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.76 E-value=3e-19 Score=124.56 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=58.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
+.+|.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAAN-PRPDALMKEQLVEMT----GLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhHHHHHHHhHHhh
Confidence 367899999999999999999999 999999999999999 99999999999999999988653
No 36
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.76 E-value=2.7e-19 Score=129.85 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDE-----CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~-----~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
...+++|.||.|+.+|+.+|| .|.. + +||+..+|++||..| +|++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~-~yp~~~~r~~La~~l----gL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRI-QKHDDVAVEQFCAET----GVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCC-CSSTTHHHHHHHHHS----CCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCC-CCCCHHHHHHHHHHh----CcCcCcccccccccccCCCC
Confidence 345678899999999999999 7999 8 999999999999999 99999999999999999875
No 37
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.76 E-value=6.9e-19 Score=123.04 Aligned_cols=62 Identities=32% Similarity=0.526 Sum_probs=58.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
.|+.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+....
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kr~~~~ 62 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVN-CYPGIDILEDLAQKL----NLELDRIQIWFQNRRAKLKRSHRE 62 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHCSCCT
T ss_pred CcCCCCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH----CcCHHHhhHhhHhHHHHHhHhchh
Confidence 36789999999999999999999 999999999999999 999999999999999999987654
No 38
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=4.4e-19 Score=130.54 Aligned_cols=63 Identities=27% Similarity=0.362 Sum_probs=55.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
.++.+|.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++.+|+|||||||+|+|+..
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFN-RYLTRRRRIEIAHAL----SLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CcCHHHhhHHhHHHHHHhHhhc
Confidence 44578899999999999999999999 999999999999999 9999999999999999999865
No 39
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-19 Score=126.77 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=60.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcC---CCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDECK---GTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~---~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
+.++.+|.||.|+.+|+.+||.+|..++ +||+..++.+||..| ||++.+|+|||||||+|+|+.....
T Consensus 4 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~l----gL~~~qV~vWFqNrR~k~rk~~~~~ 74 (80)
T 2da4_A 4 GSSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATEL----NVDCEIVRTWIGNRRRKYRLMGIEV 74 (80)
T ss_dssp CCCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHh----CCCHHHhhHhHHHHHHHHhhccCCC
Confidence 3456788999999999999999998772 699999999999999 9999999999999999999966544
No 40
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.6e-18 Score=122.85 Aligned_cols=62 Identities=24% Similarity=0.356 Sum_probs=57.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 92 ARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F~~-~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
.+.|+.|+..|+.+||..|.. + +||+..++..||..| ||++.+|+|||||||+|+|+.....
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~rk~~~~~ 64 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 64 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCccCCHHHHHHHHHHHHccC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHHHHHHHhhhccCC
Confidence 457899999999999999996 8 999999999999999 9999999999999999999987554
No 41
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=1.6e-18 Score=123.24 Aligned_cols=63 Identities=25% Similarity=0.404 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 91 TARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~-~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
.++.|+.|+..|+.+||..|.. + +||+..++..||..| ||++.+|+|||||||+|+|+..+..
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~-~yp~~~~r~~LA~~~----~l~~~qV~~WFqNRR~k~rk~~~~~ 65 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVN-KHPDPTTLCLIAAEA----GLTEEQTQKWFKQRLAEWRRSEGLP 65 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTT-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHHHHhccCC
Confidence 3567899999999999999995 8 999999999999999 9999999999999999999987543
No 42
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.75 E-value=6.5e-19 Score=120.60 Aligned_cols=58 Identities=26% Similarity=0.485 Sum_probs=50.5
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 94 ~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
+|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|+..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRT-HYPDVFTREELAMKI----GLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcC-CCcCHHHHHHHHHHH----CcCHHHHHHHhhhhhhhhHhhcc
Confidence 58999999999999999999 999999999999999 99999999999999999998654
No 43
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2.2e-18 Score=128.62 Aligned_cols=65 Identities=26% Similarity=0.488 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC---------------CcccccccchhhhHHHHHH
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------ISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~---------------ls~~~V~vWFQNRRak~Kr 153 (226)
++.+|.|+.|++.|+.+||..|+.+ +||+..+|++||..| + |++.+|++||||||+|+|+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~-~yP~~~~r~~lA~~l----~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr 79 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNEN-QYPDEAKREEIANAC----NAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKR 79 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----HHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CchhhcccccccccCcCCHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999999999 999999999999999 8 9999999999999999999
Q ss_pred hhcCC
Q 027250 154 KQSGV 158 (226)
Q Consensus 154 ~~~~~ 158 (226)
+.+..
T Consensus 80 ~~~~~ 84 (95)
T 2cuf_A 80 RANIA 84 (95)
T ss_dssp HHHCC
T ss_pred Hhhcc
Confidence 88764
No 44
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.74 E-value=1.4e-18 Score=117.59 Aligned_cols=57 Identities=26% Similarity=0.359 Sum_probs=54.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHH
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~K 152 (226)
+++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQ-RYLSAPERDQLASVL----KLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHHHHhhHHhhccCC
Confidence 56789999999999999999999 999999999999999 9999999999999999975
No 45
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=1.5e-18 Score=129.88 Aligned_cols=65 Identities=28% Similarity=0.356 Sum_probs=57.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
....++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|+..+.
T Consensus 31 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 31 LGSPSGLRTNFTTRQLTELEKEFHFN-KYLSRARRVEIAATL----ELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhHHHHHHHhHHHhHHhcc
Confidence 34578889999999999999999999 999999999999999 999999999999999999998764
No 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.74 E-value=1.9e-18 Score=116.78 Aligned_cols=54 Identities=22% Similarity=0.375 Sum_probs=50.9
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
|.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQ-KYLASAERAALAKAL----RMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhc-CCcCHHHHHHHHHHh----CcCHHHhhHhhHHhhhhhccc
Confidence 579999999999999999 999999999999999 999999999999999999985
No 47
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.74 E-value=1.2e-18 Score=119.43 Aligned_cols=59 Identities=20% Similarity=0.371 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHH
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~K 152 (226)
++.++.|+.|+..|+.+||..|..+ +||+..++..||..| ||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhccC
Confidence 3577889999999999999999999 999999999999999 9999999999999999975
No 48
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=4.6e-18 Score=121.60 Aligned_cols=61 Identities=18% Similarity=0.451 Sum_probs=56.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 93 r~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
++|..||..|+.+||..|..+ +||+..++..||..| ||++.+|+|||||||+|+|++.+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~l~~~qV~~WFqNRR~k~kk~~~~~ 69 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQN-PLPLDEELDRLRSET----KMTRREIDSWFSERRKKVNAEETKK 69 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHTTHHHHSSCSS
T ss_pred CCCccCCHHHHHHHHHHHhcc-CCCCHHHHHHHHHHh----CCCHHHhhHhhHHHHHHHHHhhhcc
Confidence 456679999999999999999 999999999999999 9999999999999999999977654
No 49
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=2.7e-18 Score=122.99 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=57.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 91 TARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
..+.|+.|+.+|+.+||..|..+ +||+..++.+||..| ||++.+|++||||||+|+|+..+.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRN-QFPGQSEVEHLTKVT----GLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHS-SSCCSHHHHHHHHHH----CCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChHHhhHHhHHHhHHHHHhccc
Confidence 44568999999999999999999 999999999999999 999999999999999999986654
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.73 E-value=1.8e-18 Score=129.35 Aligned_cols=65 Identities=18% Similarity=0.372 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 86 ~~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
++....+|.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.+
T Consensus 20 ~~~~~~~r~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 20 APKSGSTGKICKKTPEQLHMLKSAFVRT-QWPSPEEYDKLAKES----GLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp -------CCSSSSCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCCCCccCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CCCHHHeeecchhhhhHhhhhc
Confidence 3445577889999999999999999999 999999999999999 9999999999999999999854
No 51
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.73 E-value=3.9e-18 Score=121.35 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=58.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 90 LTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
..++.|+.|+..|+.+||..|..+ +||+..++.+||..| ||++.+|+|||||||+|+|+.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~-~yp~~~~r~~La~~l----~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKN-QFPHDSEIIRLMKIT----GLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHh----CcCHHHeeeCChhHhHHHHhhCcC
Confidence 357789999999999999999999 999999999999999 999999999999999999987654
No 52
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=7.2e-18 Score=127.27 Aligned_cols=70 Identities=34% Similarity=0.547 Sum_probs=62.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHH-------------hhC----CCcccccccchhhhHHH
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELA-------------KHG----QISETNVYNWFQNRRAR 150 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~-------------~~~----~ls~~~V~vWFQNRRak 150 (226)
.++.||.|+.|++.|+.+||..|..+ +||+..+|++||..|. .|| .|++.+|+|||||||++
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~-~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCC-CCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 34678899999999999999999999 9999999999999993 345 79999999999999999
Q ss_pred HHHhhcCC
Q 027250 151 LKRKQSGV 158 (226)
Q Consensus 151 ~Kr~~~~~ 158 (226)
+|++++..
T Consensus 82 ~kr~~~~~ 89 (102)
T 2da6_A 82 EAFRQKLA 89 (102)
T ss_dssp HHHHHHHH
T ss_pred HHHhhHhh
Confidence 99987653
No 53
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.72 E-value=4.3e-18 Score=122.17 Aligned_cols=59 Identities=24% Similarity=0.397 Sum_probs=55.0
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 94 ~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
.|..||.+|+.+||..|..+ +||+..+|++||..+ ||++++|+|||||||+|+|+....
T Consensus 6 ~r~kfT~~Ql~~Le~~F~~~-~YPs~~er~~LA~~t----gLte~qIkvWFqNrR~k~Kk~~l~ 64 (76)
T 2ecc_A 6 SGKRKTKEQLAILKSFFLQC-QWARREDYQKLEQIT----GLPRPEIIQWFGDTRYALKHGQLK 64 (76)
T ss_dssp CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHHTCCS
T ss_pred CCCCCCHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH----CcCHHHhhHHhHhhHHHHHHHHHH
Confidence 45669999999999999999 999999999999999 999999999999999999987544
No 54
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.72 E-value=9.5e-18 Score=119.10 Aligned_cols=63 Identities=22% Similarity=0.396 Sum_probs=58.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F---~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
.+|.|+.|+..|+.+||..| ..+ +||+..++..||..| ||++.+|++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhcccccccc
Confidence 36789999999999999999 788 999999999999999 9999999999999999999866553
No 55
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=1.1e-17 Score=118.70 Aligned_cols=64 Identities=16% Similarity=0.253 Sum_probs=58.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~---~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
++.++.|+.|+..|+.+||.+|.. + +||+..++.+||..+ ||++.+|++||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGH-PYPTEDEKKQIAAQT----NLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHHHH----CcCHHHHHHHhHHHHhhccccccc
Confidence 356788999999999999999987 6 999999999999999 999999999999999999986543
No 56
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=7.4e-18 Score=116.66 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=55.2
Q ss_pred CCCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 91 TARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 91 ~rr~Rt~~s~~Ql~~Le~~F---~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
.++.|+.|+..|+.+||..| ..+ +||+..++..||..| ||++.+|++||||||+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhcc
Confidence 57789999999999999999 788 999999999999999 99999999999999999886
No 57
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2.9e-17 Score=121.40 Aligned_cols=57 Identities=14% Similarity=0.376 Sum_probs=53.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
.|+.+|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+|++.+..
T Consensus 17 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----gLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNS-SVLTDEELNRLRAQT----KLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHT----CCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CcChHHCeecccccchHHHHHHHHh
Confidence 69999999999999999 999999999999999 9999999999999999998866544
No 58
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.69 E-value=2.6e-17 Score=120.57 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=56.7
Q ss_pred CCCCCCCCHHHHHHHHHHH---hhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 92 ARQRWTPTPAQLQILEHVY---DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F---~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
||.|+.|+..|+.+||.+| ..+ +||+..++..||..| ||++.+|++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~-~yp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSN-PYPSEEAKEELAKKC----GITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTS-CCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 788 999999999999999 999999999999999999996654
No 59
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.69 E-value=5.4e-17 Score=118.26 Aligned_cols=65 Identities=18% Similarity=0.273 Sum_probs=59.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhhc--CCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 90 LTARQRWTPTPAQLQILEHVYDEC--KGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~~--~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
+.++.|+.|+.+|+.+||.+|..+ ++||+..++..||..+ ||++.+|+|||||||+|+|+.....
T Consensus 6 ~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~----gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 6 SGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKT----NLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHH----CcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 467789999999999999999873 4999999999999999 9999999999999999999876654
No 60
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=2e-17 Score=115.50 Aligned_cols=59 Identities=22% Similarity=0.371 Sum_probs=55.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDE-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~-~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
.+.++|.||.|+.+||.+|+.+|+. + +||+...|+.||.+| ||++++|+|||||||--.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~-~yPd~~~r~~La~~t----GL~~~~IqVWFQNrR~~~ 63 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVG-LYPDQEAIHTLSAQL----DLPKHTIIKFFQNQRYHV 63 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHC-SCCCHHHHHHHHHHS----CCCHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCCHHHHHHhhccceeee
Confidence 4468899999999999999999999 8 999999999999999 999999999999999754
No 61
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.68 E-value=2.6e-17 Score=112.53 Aligned_cols=55 Identities=20% Similarity=0.329 Sum_probs=52.7
Q ss_pred CCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 95 RWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 95 Rt~~s~~Ql~~Le~~F~~---~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
|+.|+..|+.+||..|.. + +||+..++..||..+ ||++.+|++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~-~yp~~~~r~~La~~~----gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHcccccC
Confidence 678999999999999999 7 999999999999999 999999999999999999874
No 62
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=7.3e-17 Score=119.10 Aligned_cols=58 Identities=22% Similarity=0.462 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCCC
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGVV 159 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~~ 159 (226)
.+|..|+.+||..|..+ +||+..++..||..| ||++++|+|||||||+|+|+..+...
T Consensus 19 ~~t~~Ql~~Le~~F~~~-~yp~~~~r~~La~~~----~l~~~qV~vWFqNRR~k~r~~~~~~~ 76 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKS-SFPTQAELDRLRVET----KLSRREIDSWFSERRKLRDSMEQAVL 76 (89)
T ss_dssp CCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHTSCSCCC
T ss_pred cCCHHHHHHHHHHHccC-CCCCHHHHHHHHHHh----CCCHHhccHhhHhHHHHHHHHhHhhh
Confidence 49999999999999999 999999999999999 99999999999999999998776653
No 63
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.68 E-value=8.7e-18 Score=126.54 Aligned_cols=70 Identities=30% Similarity=0.461 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhh--------------CC---CcccccccchhhhHHH
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKH--------------GQ---ISETNVYNWFQNRRAR 150 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~--------------~~---ls~~~V~vWFQNRRak 150 (226)
.++.||.|+.|++.|+.+||..|..+ +||+..+|++||..|..+ .| |++.+|+|||||||++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~-~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k 84 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 84 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHH
Confidence 45678899999999999999999999 999999999999992100 17 9999999999999999
Q ss_pred HHHhhcCC
Q 027250 151 LKRKQSGV 158 (226)
Q Consensus 151 ~Kr~~~~~ 158 (226)
+|++++..
T Consensus 85 ~k~k~~~~ 92 (99)
T 1lfb_A 85 EAFRHKLA 92 (99)
T ss_dssp TSCCC---
T ss_pred HHHhchhh
Confidence 88766543
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.68 E-value=9.9e-18 Score=119.16 Aligned_cols=59 Identities=19% Similarity=0.352 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 92 ARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F-~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
.+.|..++..|+.+||..| ..+ +||+..+|.+||..| ||++++|+|||||||+|+|+..
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~-~yp~~~~r~~LA~~l----~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVT-KYPDEKRLKGLSKQL----DWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTC-SSCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CCChhhcchhhhhcccCCCCCC
Confidence 3445567788999999999 888 999999999999999 9999999999999999998743
No 65
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.67 E-value=2.6e-17 Score=116.11 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
..++..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|+||+...
T Consensus 9 ~~~t~~ql~~LE~~F~~~-~yp~~~~r~~LA~~l----~Lte~qVqvWFqNRRak~kr~~~~ 65 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQ-KYLSAPERAHLAKNL----KLTETQVKIWFQNRRYKTKRKQLS 65 (69)
T ss_dssp CCCCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHT----TCCHHHHHHHHHHHHHHSCCSSSS
T ss_pred CcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CCChhheeecchhhhhhhhhhhhh
Confidence 468999999999999999 999999999999999 999999999999999999987654
No 66
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.66 E-value=8.1e-17 Score=118.12 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=55.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 90 LTARQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 90 ~~rr~Rt~~s~~Ql~~Le~~F~~---~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
++++.|+.|+..|+.+||.+|.. + +||+..++..||..+ ||++.+|++||||||+|+|.
T Consensus 26 ~~~k~r~~ft~~q~~~Le~~f~~~~~~-~yP~~~~r~~La~~~----gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 26 TKPYRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTTSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCC-CCcCHHHHHHHHHHH----CcCHHHHHHHHHHHHhhccC
Confidence 45667899999999999999999 8 999999999999999 99999999999999999873
No 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.65 E-value=1e-16 Score=111.65 Aligned_cols=53 Identities=17% Similarity=0.360 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
-+..|+.+||..|..+ +||+..++.+||..| ||++++|++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~-~YPs~~er~eLA~~t----gLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQS-QFPDDAEVYRLIEVT----GLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGG-GSCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcC-CCCCHHHHHHHHHHh----CcCHHHhhHhcccchhhhhccC
Confidence 3689999999999999 999999999999999 9999999999999999999753
No 68
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.65 E-value=1.1e-16 Score=116.62 Aligned_cols=57 Identities=19% Similarity=0.307 Sum_probs=53.0
Q ss_pred CCCCCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 93 RQRWTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 93 r~Rt~~s~~Ql~~Le~~F~~---~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
+.|+.|+..|+.+||.+|.. + +||+..++..||..+ ||++.+|++||||||+|+|+.
T Consensus 4 krr~rft~~q~~~Le~~f~~h~~~-~yP~~~~r~~La~~~----gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 4 YRGHRFTKENVRILESWFAKNIEN-PYLDTKGLENLMKNT----SLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp -CCCCCCHHHHHHHHHHHHHTSSS-CCCCHHHHHHHHHHH----CCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCHHHHHHHHHHHHhhCCC-CCcCHHHHHHHHHHH----CCCHHHcccccHHHHcccccc
Confidence 44566999999999999999 8 999999999999999 999999999999999999885
No 69
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.6e-17 Score=112.08 Aligned_cols=54 Identities=17% Similarity=0.335 Sum_probs=50.3
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 95 Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
+..++..|+.+||..|..+ +||+..+|.+||..| ||++++|+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~-~yp~~~~r~~LA~~l----~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALN-AQPSAEELSKIADSV----NLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcC-CCcCHHHHHHHHHHh----CcChhhcCcchhcccCCCCC
Confidence 3456799999999999999 999999999999999 99999999999999998766
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=8.9e-17 Score=111.68 Aligned_cols=50 Identities=22% Similarity=0.490 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHh-hcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 100 PAQLQILEHVYD-ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 100 ~~Ql~~Le~~F~-~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
+.|+.+||+.|. .+ +||+..+|.+||..| ||++++|+|||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~-~yp~~~~r~~LA~~l----~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAIT-KHPDEKRLEGLSKQL----DWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTC-SSCCHHHHHHHHHHH----CSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcC-CCcCHHHHHHHHHHh----CCCHHHHHHHHHHHHhccCCC
Confidence 347899999995 56 999999999999999 999999999999999999863
No 71
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.59 E-value=1.5e-16 Score=133.15 Aligned_cols=62 Identities=34% Similarity=0.548 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCC---------------------Ccccccccchh
Q 027250 87 SQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQ---------------------ISETNVYNWFQ 145 (226)
Q Consensus 87 ~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~---------------------ls~~~V~vWFQ 145 (226)
..++.||.|+.|++.|+.+||..|..+ +||+..+|++||..| + |++.+|++|||
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~-~yp~~~~Re~la~~~----~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFq 185 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQ-KNPSKEERETLVEEC----NRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFA 185 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHH-CCCCTTTTHHHHHHH----HHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHh----CchhhccccccccccccccccccCccccchhch
Confidence 456788999999999999999999999 999999999999999 7 99999999999
Q ss_pred hhHHHHHH
Q 027250 146 NRRARLKR 153 (226)
Q Consensus 146 NRRak~Kr 153 (226)
|||+++|.
T Consensus 186 NRR~~~k~ 193 (194)
T 1ic8_A 186 NRRKEEAF 193 (194)
T ss_dssp HHHHHCC-
T ss_pred hhhhhhhc
Confidence 99999864
No 72
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.59 E-value=4.1e-16 Score=126.86 Aligned_cols=65 Identities=23% Similarity=0.279 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 88 QKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 88 ~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
..+.||.|+.|+..|+.+||..|..+ +||+..+|..||..| ||++.+|+|||||||+|+|+....
T Consensus 94 ~~~~rr~Rt~ft~~q~~~Le~~F~~~-~yp~~~~r~~la~~l----~L~~~qV~~WFqNrR~r~k~~~~~ 158 (164)
T 2d5v_A 94 GNTPKKPRLVFTDVQRRTLHAIFKEN-KRPSKELQITISQQL----GLELSTVSNFFMNARRRSLDKWLE 158 (164)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHTSSCC---
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcC-CCCCHHHHHHHHHHH----CcCHHHhhhcChhhhccccccCCC
Confidence 44578899999999999999999999 999999999999999 999999999999999999875543
No 73
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=5.3e-15 Score=103.50 Aligned_cols=56 Identities=16% Similarity=0.251 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHh---hcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 97 TPTPAQLQILEHVYD---ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~---~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
.|+.+|+.+|+..|. .+ +||+..++.+||..+ ||++.+|++||||||+|+|+....
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~-pyp~~~~r~~La~~~----~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTH-PYPSEEQKKQLAQDT----GLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTS-CCCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHh----CcCHHHhhhhhHHHHHHHhHHHHH
Confidence 589999999999999 88 999999999999999 999999999999999999886543
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.43 E-value=6.8e-14 Score=118.67 Aligned_cols=65 Identities=35% Similarity=0.593 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHh-------------h----CCCcccccccchhhhH
Q 027250 86 GSQKLTARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAK-------------H----GQISETNVYNWFQNRR 148 (226)
Q Consensus 86 ~~~~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~-------------~----~~ls~~~V~vWFQNRR 148 (226)
+..++.||.|+.|++.|+.+||..|..+ +||+..+|++||..|.. | ..|++.+|++||||||
T Consensus 137 ~~~~k~RR~R~~ft~~ql~~Le~~F~~~-~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 137 PTNKKMRRNRFKWGPASQQILYQAYDRQ-KNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp -----CCCCCCCCCHHHHHHHHHHHHHC-SSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred cccCCCCCCCcCCCHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 3456788999999999999999999999 99999999999999831 1 1289999999999999
Q ss_pred HHH
Q 027250 149 ARL 151 (226)
Q Consensus 149 ak~ 151 (226)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 864
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=1.9e-13 Score=95.87 Aligned_cols=46 Identities=15% Similarity=0.427 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHH
Q 027250 100 PAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (226)
Q Consensus 100 ~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak 150 (226)
.+|+.+||.+|..+ ++|+..++..||..+ ||+.++|+|||||||+.
T Consensus 14 k~ql~~Lk~yF~~n-~~Ps~eei~~LA~~l----gL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMN-MEPNSDELLKISIAV----GLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHC-SSCCHHHHHHHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHHHHh----CCCHHHHHHHHhhcccc
Confidence 57999999999999 999999999999999 99999999999999984
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.29 E-value=1.6e-12 Score=95.65 Aligned_cols=56 Identities=27% Similarity=0.340 Sum_probs=51.6
Q ss_pred CCCCHHHHHHHHHHHhh---cCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhc
Q 027250 96 WTPTPAQLQILEHVYDE---CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQS 156 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~---~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~ 156 (226)
-.++.+++.+|+.+|.. + +||+..++.+||..+ ||++.||++||+|+|.|.++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~n-pYPs~~ek~~LA~~t----gLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYN-AYPSEQEKALLSQQT----HLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGG-GSCCHHHHHHHHHHS----SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHH----CcCHHHHHHHHHHHHHHhhhHHH
Confidence 46889999999999987 6 999999999999999 99999999999999999988654
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.22 E-value=2.8e-12 Score=115.66 Aligned_cols=56 Identities=21% Similarity=0.353 Sum_probs=52.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHH
Q 027250 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~K 152 (226)
++.|+.++..|+..||+.|+.+ +||+..+|.+||..| ||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~-~yp~~~~~~~la~~~----~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRK-QSLNSKEKEEVAKKC----GITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHC-SCCCHHHHHHHHHHH----TSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcC-CCcCHHHHHHHHHHH----CcCHHHhhHhhhhcccccC
Confidence 3557789999999999999999 999999999999999 9999999999999999875
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.71 E-value=1.8e-09 Score=66.69 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=18.5
Q ss_pred cccccchhhhHHHHHHhhcCC
Q 027250 138 TNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 138 ~~V~vWFQNRRak~Kr~~~~~ 158 (226)
+||+|||||||+||||.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987753
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.84 E-value=0.031 Score=38.75 Aligned_cols=38 Identities=24% Similarity=0.485 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhh
Q 027250 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (226)
Q Consensus 104 ~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQN 146 (226)
..|+.+|... +.+...+...|+.+. +|+..+|+.||--
T Consensus 19 e~L~~Yy~~h-k~L~EeDl~~L~~ks----kms~qqvkdwFa~ 56 (70)
T 2ys9_A 19 QPLERYWAAH-QQLRETDIPQLSQAS----RLSTQQVLDWFDS 56 (70)
T ss_dssp HHHHHHHHHT-CCCCTTHHHHHHHHT----TCCHHHHHHHHHH
T ss_pred hHHHHHHHHh-cccchhhHHHHHHHh----CCCHHHHHHHHHh
Confidence 5999999999 899999999999999 9999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=65.77 E-value=5.3 Score=25.50 Aligned_cols=46 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhh
Q 027250 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (226)
Q Consensus 95 Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQN 146 (226)
|..|+++.......++... .+......++|..+ ||+...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~~g--~s~~~~~~~vA~~~----gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND--NDCKGNQRATARKY----NIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC--TTTTTCHHHHHHHT----TSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC--CCcchHHHHHHHHH----CcCHHHHHHHHHH
Confidence 4468888877665555444 33222356899999 9999999999754
No 81
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=63.76 E-value=11 Score=27.60 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=37.4
Q ss_pred CCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 94 QRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 94 ~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
+|..+|.++...+-..+..+ ..+.. .++|+.+ |++...|..|..++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~-g~~~~---~~~A~~~----gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEEN-PDLRK---GEIARRF----NIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHC-TTSCH---HHHHHHH----TCCHHHHHHHHHTHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHC-CCCcH---HHHHHHh----CCCHHHHHHHHhchhhhc
Confidence 46789999987776666544 44443 3688999 999999999998876543
No 82
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=62.30 E-value=8.1 Score=26.69 Aligned_cols=45 Identities=13% Similarity=0.240 Sum_probs=31.9
Q ss_pred CCCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhh
Q 027250 92 ARQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQN 146 (226)
++.+..++.++....-..+... .+ ..++|+.+ |++...|+.|...
T Consensus 17 ~~~~~~ys~e~k~~~v~~~~~g--~s----~~~iA~~~----gIs~sTl~rW~k~ 61 (87)
T 2elh_A 17 KRPLRSLTPRDKIHAIQRIHDG--ES----KASVARDI----GVPESTLRGWCKN 61 (87)
T ss_dssp SSCCSSCCHHHHHHHHHHHHHT--CC----HHHHHHHH----TCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCC--CC----HHHHHHHH----CcCHHHHHHHHHH
Confidence 4456678888865555556433 22 45789999 9999999999853
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=57.30 E-value=12 Score=25.91 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
+++.+..+|.-.|-.. + ...+||..| |++...|+.+...=|.+.|+.
T Consensus 38 L~~~~r~vl~l~~~~g--~----s~~eIA~~l----gis~~tV~~~l~ra~~~Lr~~ 84 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG--W----STAQIATDL----GIAEGTVKSRLHYAVRALRLT 84 (92)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 5677888888766555 2 245899999 999999999887766666654
No 84
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=51.58 E-value=12 Score=21.66 Aligned_cols=40 Identities=8% Similarity=0.132 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhh
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQN 146 (226)
.++..+...+...+... + + ..+||+.| |++...|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g--~-s---~~~IA~~l----gis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN--V-S---LHEMSRKI----SRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT--C-C---HHHHHHHH----TCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC--C-C---HHHHHHHH----CcCHHHHHHHHhh
Confidence 46676665555555444 2 2 45789999 9999999999853
No 85
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=51.40 E-value=14 Score=23.52 Aligned_cols=46 Identities=15% Similarity=-0.047 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
+++.+..+|...|-.. ++ ..++|..+ |+++..|+.+...-+.+.++
T Consensus 16 L~~~~r~il~l~~~~g--~s----~~eIA~~l----gis~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 16 LTTDQREALLLTQLLG--LS----YADAAAVC----GCPVGTIRSRVARARDALLA 61 (70)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHH----TSCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHH
Confidence 6788888888876544 22 34799999 99999999988655555443
No 86
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.98 E-value=0.3 Score=38.62 Aligned_cols=30 Identities=3% Similarity=-0.226 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHhhcCCCCCH
Q 027250 89 KLTARQRWTPTPAQLQILEHVYDECKGTPRK 119 (226)
Q Consensus 89 ~~~rr~Rt~~s~~Ql~~Le~~F~~~~~~p~~ 119 (226)
...+|.||.|+..|+..|+..|+.+ +||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~-~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQAN-PVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCC-CCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCC-CCccc
Confidence 4567899999999999999999999 88875
No 87
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=43.06 E-value=7.1 Score=23.17 Aligned_cols=41 Identities=10% Similarity=0.235 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhH
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRR 148 (226)
++.++...+...+... . ...+||..+ |++...|+.|+....
T Consensus 6 ~~~~~~~~i~~l~~~g---~---s~~~ia~~l----gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLEKG---H---PRQQLAIIF----GIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHHTT---C---CHHHHHHTT----SCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHHcC---C---CHHHHHHHH----CCCHHHHHHHHHHcc
Confidence 4455555554555433 2 245789999 999999999996543
No 88
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=41.60 E-value=25 Score=25.61 Aligned_cols=47 Identities=19% Similarity=0.317 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
+++.+..++...|..+ +. ..++|..+ |++...|+.|...-|.+.++.
T Consensus 23 L~~~~r~vl~l~y~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~ 69 (113)
T 1s7o_A 23 LTDKQMNYIELYYADD--YS----LAEIADEF----GVSRQAVYDNIKRTEKILETY 69 (113)
T ss_dssp SCHHHHHHHHHHHHTC--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHH
Confidence 6788888888876555 22 34799999 999999999998777666554
No 89
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=40.50 E-value=13 Score=28.68 Aligned_cols=43 Identities=14% Similarity=0.244 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 103 l~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
+......|... .|- ......||+.. |++...|+..|.++-.=.
T Consensus 34 l~aa~~lf~~~-G~~-~~tv~~IA~~a----gvs~~t~Y~~F~sK~~Ll 76 (215)
T 2qko_A 34 VNAAIEVLARE-GAR-GLTFRAVDVEA----NVPKGTASNYFPSRDDLF 76 (215)
T ss_dssp HHHHHHHHHHT-CTT-TCCHHHHHHHS----SSTTTCHHHHCSCHHHHH
T ss_pred HHHHHHHHHHh-Chh-hccHHHHHHHc----CCCcchHHHhCCCHHHHH
Confidence 33444557777 543 44567899999 999999999999975543
No 90
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=39.68 E-value=26 Score=25.64 Aligned_cols=47 Identities=11% Similarity=0.046 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHh
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRK 154 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~ 154 (226)
.+++.+..+|. .|-.+ + ...+||..| |++...|+.+...=|.+.|+.
T Consensus 109 ~L~~~~r~v~~-~~~~g--~----s~~EIA~~l----gis~~tV~~~~~ra~~~Lr~~ 155 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG--Y----SYREIATIL----SKNLKSIDNTIQRIRKKSEEW 155 (164)
T ss_dssp HSCHHHHHHHH-HHTTT--C----CHHHHHHHH----TCCHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHH
Confidence 36677777777 44444 2 245789999 999999999887666666554
No 91
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=36.68 E-value=29 Score=22.60 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHH
Q 027250 97 TPTPAQLQILEHVYD----ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLK 152 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~----~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~K 152 (226)
.+++.+..+|...|- .. . ...+||..| |++...|+.+...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~---~---s~~eIA~~l----~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE---H---TLEEVGAYF----GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC---C---CHHHHHHHH----TCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC---C---CHHHHHHHH----CCCHHHHHHHHHHHHHHHH
Confidence 478888999988885 33 1 234899999 9999999998765555544
No 92
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=35.83 E-value=45 Score=23.64 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=33.4
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHH
Q 027250 95 RWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (226)
Q Consensus 95 Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak 150 (226)
...+++.+..+|.-++ .. +. ..+||..| ++++..|+.+..+=+.|
T Consensus 32 ~~~Lt~re~~Vl~l~~-~G--~s----~~EIA~~L----~iS~~TV~~~l~ri~~K 76 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA-EG--FL----VTEIAKKL----NRSIKTISSQKKSAMMK 76 (99)
T ss_dssp SSSCCHHHHHHHHHHH-HT--CC----HHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 3568999999998765 33 22 25899999 99999999887644433
No 93
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.33 E-value=40 Score=23.36 Aligned_cols=46 Identities=15% Similarity=0.176 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHH
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKR 153 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr 153 (226)
.+++.+..+|.-++. . +. ..+||..| |+++..|+.+..+=+.|.+.
T Consensus 27 ~Lt~~e~~vl~l~~~-g--~s----~~eIA~~l----~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 27 GLTDQERTLLGLLSE-G--LT----NKQIADRM----FLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp CCCHHHHHHHHHHHT-T--CC----HHHHHHHH----TCCHHHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHc-C--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHcC
Confidence 488999999988642 2 22 35899999 99999999887655555433
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=33.59 E-value=24 Score=22.70 Aligned_cols=49 Identities=6% Similarity=0.120 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
.+++.+..+|...|-.. .+ ......+||..+ |++...|+.+...=+.|.
T Consensus 5 ~L~~~er~il~l~~~l~-~~-~g~s~~eIA~~l----gis~~tV~~~~~ra~~kL 53 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGID-MN-TDYTLEEVGKQF----DVTRERIRQIEAKALRKL 53 (68)
T ss_dssp CCCHHHHHHHHHHTTTT-SS-SCCCHHHHHHHH----TCCHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHccC-CC-CCCCHHHHHHHH----CcCHHHHHHHHHHHHHHH
Confidence 36788889998887221 00 011235799999 999999998775444333
No 95
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=33.57 E-value=53 Score=20.85 Aligned_cols=45 Identities=24% Similarity=0.263 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
..+++.+..+|..+ ..+ + ...++|..+ |++...|+.+...=+.|.
T Consensus 10 ~~L~~~e~~il~~~-~~g--~----s~~eIA~~l----~is~~tV~~~~~~~~~kl 54 (74)
T 1fse_A 10 PLLTKREREVFELL-VQD--K----TTKEIASEL----FISEKTVRNHISNAMQKL 54 (74)
T ss_dssp CCCCHHHHHHHHHH-TTT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH-HcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 45889999999874 333 2 234799999 999999998876544443
No 96
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=32.45 E-value=34 Score=24.80 Aligned_cols=48 Identities=19% Similarity=0.249 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
+++.+..+|.-.|-.+ +. ..++|..| |+++..|+.+...-|.+.++.-
T Consensus 26 L~~~~r~vl~l~~~~g--~s----~~EIA~~l----giS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED--YS----LSEIADTF----NVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC--CC----HHHHHHHT----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHHHHHHH
Confidence 5677888888776555 22 34789999 9999999999887666666543
No 97
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.95 E-value=37 Score=23.05 Aligned_cols=46 Identities=11% Similarity=0.200 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHhhc----CCCCCHHHHHHHHHHHHhhCCCcccccccchh
Q 027250 96 WTPTPAQLQILEHVYDEC----KGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~----~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQ 145 (226)
|.++.++...+...|..- +.+.+..+...+...+ |++...|..+|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~----g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKS----KLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHH----SSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 567889999999999652 2567777777777777 888777666553
No 98
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=31.62 E-value=32 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=22.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcCC
Q 027250 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSGV 158 (226)
Q Consensus 105 ~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~~ 158 (226)
++.-.|+.| +||... |--.. =.|||.+||..+++.
T Consensus 17 iIkiLyQSN-PyP~pe-------------GTRqa-----RRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 17 LIKFLYQSN-PPPNPE-------------GTRQA-----RRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHSS-CCCCCC-------------CCTTT-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHccC-CCCCCC-------------Cchhh-----hHhHHHHHHHHHHHH
Confidence 444457777 999763 32221 159999999888763
No 99
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=31.03 E-value=44 Score=22.44 Aligned_cols=44 Identities=18% Similarity=0.185 Sum_probs=32.1
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHH
Q 027250 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak 150 (226)
..+++.+..+|.-++ .+ + ...+||..| |++...|+.+..+=+.|
T Consensus 20 ~~Lt~~e~~vl~l~~-~g--~----s~~eIA~~l----~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 20 NQLTPRERDILKLIA-QG--L----PNKMIARRL----DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GGSCHHHHHHHHHHT-TT--C----CHHHHHHHH----TSCHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH-cC--C----CHHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 358899999998843 33 2 244899999 99999999877644443
No 100
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=30.19 E-value=17 Score=27.59 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 101 ~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
.-+..-...|... .| . .....||+.. |++...|+..|.++-.
T Consensus 19 ~Il~aA~~lf~~~-G~-~-~s~~~IA~~a----gvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 19 KILAAAVRVFSEE-GL-D-AHLERIAREA----GVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHHH-CT-T-CCHHHHHHHT----TCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHHHhc-Cc-C-CCHHHHHHHh----CCChHHHHHHcCCHHH
Confidence 3344555668888 77 5 7888999999 9999999999999743
No 101
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.74 E-value=33 Score=23.32 Aligned_cols=45 Identities=11% Similarity=0.220 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHh----hcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 97 TPTPAQLQILEHVYD----ECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~----~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
.+++.+..+|...|- .. . ...+||..| |++...|+.+...=+.|.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~---~---s~~EIA~~l----gis~~tV~~~~~ra~~kL 66 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKP---K---TLEEVGQYF----NVTRERIRQIEVKALRKL 66 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC---C---CHHHHHHHH----TCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCCCC---C---CHHHHHHHH----CCCHHHHHHHHHHHHHHH
Confidence 367888888888875 22 1 245789999 999999998876444443
No 102
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.34 E-value=49 Score=25.11 Aligned_cols=48 Identities=8% Similarity=-0.008 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
+++.+..+|.-.|-.+ + ...+||..| |+++..|+.+...=|.+.|+.-
T Consensus 141 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG--L----SYEEIAAIM----DCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC--C----CHHHHHHHH----CCCHHHHHHHHHHHHHHHHHHH
Confidence 4555556665555433 2 234789999 9999999999887777666544
No 103
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.19 E-value=49 Score=22.54 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHH
Q 027250 97 TPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (226)
Q Consensus 97 ~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak 150 (226)
.+++.+..+|.-++ .+ +... +||..| |+++..|+.+..+=+.|
T Consensus 29 ~Lt~~e~~vl~l~~-~g--~s~~----eIA~~l----~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLLIA-KG--YSNQ----EIASAS----HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHHHH-TT--CCTT----HHHHHH----TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH-cC--CCHH----HHHHHH----CcCHHHHHHHHHHHHHH
Confidence 47888888987754 22 3332 789999 99999999887644443
No 104
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.29 E-value=36 Score=26.00 Aligned_cols=45 Identities=24% Similarity=0.355 Sum_probs=33.2
Q ss_pred HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 101 AQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 101 ~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
.-+..-...|... .|-. .....||+.. |++..-|+..|.++-.=.
T Consensus 15 ~Il~aA~~lF~~~-Gy~~-ts~~~IA~~a----Gvsk~tlY~~F~sKe~L~ 59 (202)
T 2i10_A 15 VALQTAMELFWRQ-GYEG-TSITDLTKAL----GINPPSLYAAFGSKRDLF 59 (202)
T ss_dssp HHHHHHHHHHHHH-TTTT-CCHHHHHHHH----TCCHHHHHHHHCSHHHHH
T ss_pred HHHHHHHHHHHHh-Cccc-CCHHHHHHHh----CCChHHHHHHhCCHHHHH
Confidence 3444555668777 6553 3567899999 999999999999875443
No 105
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=25.15 E-value=79 Score=21.99 Aligned_cols=46 Identities=11% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHhhc-CCCCC-HHHHHHHHHHHHhhCCCcccccccchh
Q 027250 96 WTPTPAQLQILEHVYDEC-KGTPR-KQKIQDMTAELAKHGQISETNVYNWFQ 145 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~-~~~p~-~~~r~~LA~~L~~~~~ls~~~V~vWFQ 145 (226)
..|+.++....-..+... ..+++ .....++|..+ |++...|+.|..
T Consensus 5 ~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~----gIs~~tl~~W~~ 52 (108)
T 2rn7_A 5 TRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI----GCTPETLRVWVR 52 (108)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcccccccccccHHHHHHHH----CcCHHHHHHHHH
Confidence 458887775444444322 01222 24567899999 999999999974
No 106
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=24.95 E-value=76 Score=21.64 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHh-h-cCCCCCHHHHHHHHHHHHhhCCCcccccccchh
Q 027250 96 WTPTPAQLQILEHVYD-E-CKGTPRKQKIQDMTAELAKHGQISETNVYNWFQ 145 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~-~-~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQ 145 (226)
..|+.++....-..+. . . . ...++|..+ |++...|+.|..
T Consensus 4 ~~ys~e~k~~~v~~~~~~~g--~----s~~~ia~~~----gIs~~tl~rW~~ 45 (97)
T 2jn6_A 4 KTYSEEFKRDAVALYENSDG--A----SLQQIANDL----GINRVTLKNWII 45 (97)
T ss_dssp CCCCHHHHHHHHHHHTTGGG--S----CHHHHHHHH----TSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC--C----hHHHHHHHH----CcCHHHHHHHHH
Confidence 4588877655544453 3 3 1 255889999 999999999975
No 107
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=24.56 E-value=25 Score=27.67 Aligned_cols=39 Identities=18% Similarity=0.353 Sum_probs=28.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 105 ~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
.-...|... .| .......||+.. |++...|+..|.|+-.
T Consensus 52 aA~~lf~e~-G~-~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~ 90 (236)
T 3q0w_A 52 TAENLLEDR-PL-ADISVDDLAKGA----GISRPTFYFYFPSKEA 90 (236)
T ss_dssp HHHHHHHHS-CG-GGCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHc-Cc-ccCCHHHHHHHh----CCcHHHHHHHCCCHHH
Confidence 334447666 54 344567899999 9999999999999843
No 108
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.00 E-value=62 Score=25.24 Aligned_cols=48 Identities=13% Similarity=0.134 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhh
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQ 155 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~ 155 (226)
+++.+..+|.-.|-.. + ...+||..| |++...|+.+...=|.+.|+.-
T Consensus 188 L~~~~r~vl~l~~~~g--~----s~~EIA~~l----gis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE--L----PAKEVAKIL----ETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp SCHHHHHHHHHHHTSC--C----CHHHHHHHT----TSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC--C----CHHHHHHHh----CCCHHHHHHHHHHHHHHHHHHH
Confidence 6777888888777544 2 244789999 9999999999887666666543
No 109
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=23.66 E-value=57 Score=23.43 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhh
Q 027250 96 WTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNR 147 (226)
Q Consensus 96 t~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNR 147 (226)
..++.++...+...+..+ .. ..++|..| |++...|+.|+..-
T Consensus 5 ~~~s~~~r~~i~~~~~~G--~s----~~~ia~~l----gis~~Tv~r~~~~~ 46 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN--VS----LHEMSRKI----SRSRHCIRVYLKDP 46 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT--CC----HHHHHHHH----TCCHHHHHHHHHSG
T ss_pred ccCCHHHHHHHHHHHHcC--CC----HHHHHHHH----CcCHHHHHHHHHcc
Confidence 457788777776777544 22 45789999 99999999999743
No 110
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=23.11 E-value=45 Score=21.63 Aligned_cols=42 Identities=24% Similarity=0.213 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHH
Q 027250 98 PTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRAR 150 (226)
Q Consensus 98 ~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak 150 (226)
+++.+..+|.-++ .+ +. ..++|..+ |+++..|+.+...=+.|
T Consensus 17 L~~~e~~vl~l~~-~g--~s----~~eIA~~l----~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVLSAVV-AG--LP----NKSIAYDL----DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHHHHHT-TT--CC----HHHHHHHT----TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHHHHHH
Confidence 5677788887743 22 22 34789999 99999999877644444
No 111
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=23.06 E-value=44 Score=25.27 Aligned_cols=40 Identities=15% Similarity=0.429 Sum_probs=30.4
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhH
Q 027250 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (226)
Q Consensus 103 l~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRR 148 (226)
+......|... .|-. .....||+.. |++...|+..|.++-
T Consensus 20 l~aA~~lf~~~-G~~~-~s~~~Ia~~a----gvs~~t~Y~yF~sKe 59 (203)
T 3ccy_A 20 IERAAAMFARQ-GYSE-TSIGDIARAC----ECSKSRLYHYFDSKE 59 (203)
T ss_dssp HHHHHHHHHHT-CTTT-SCHHHHHHHT----TCCGGGGTTTCSCHH
T ss_pred HHHHHHHHHHc-Cccc-CCHHHHHHHh----CCCcCeeeeeeCCHH
Confidence 44455568777 6543 4567899999 999999999999873
No 112
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=22.62 E-value=35 Score=26.83 Aligned_cols=53 Identities=15% Similarity=0.270 Sum_probs=34.0
Q ss_pred CCCCCCCHHH-HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 93 RQRWTPTPAQ-LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 93 r~Rt~~s~~Q-l~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
+.|...+.+. +......|... .| .......||+.+ |++..-|+..|.+|-.=.
T Consensus 20 ~~r~~~tr~~Il~aA~~l~~~~-G~-~~~s~~~IA~~a----Gvs~~tlY~~F~~K~~L~ 73 (211)
T 3fiw_A 20 QGMTKMNRETVITEALDLLDEV-GL-DGVSTRRLAKRL----GVEQPSLYWYFRTKRDLL 73 (211)
T ss_dssp ----CCCHHHHHHHHHHHHHHH-CG-GGCCHHHHHHHH----TSCTHHHHTTCSSHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhc-Cc-ccCCHHHHHHHh----CCChhHHHHHcCCHHHHH
Confidence 3444455543 34445557666 54 334567899999 999999999999875443
No 113
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=22.20 E-value=47 Score=22.72 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=21.2
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHHHHhhcC
Q 027250 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARLKRKQSG 157 (226)
Q Consensus 105 ~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~Kr~~~~ 157 (226)
++.-.|+.+ +||+.. -..-| =.|||.+|+..+..
T Consensus 20 iIkiLyQSN-P~P~p~-GTrqa-----------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 20 LIKFLYQSN-PPPNPE-GTRQA-----------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHTC-CCCCCC-SCHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHccC-CCCCCC-CchHH-----------------HHHHHHHHHHHHHH
Confidence 444557778 999763 11111 14899999887764
No 114
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=22.20 E-value=43 Score=24.96 Aligned_cols=38 Identities=26% Similarity=0.434 Sum_probs=28.7
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhH
Q 027250 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (226)
Q Consensus 105 ~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRR 148 (226)
.....|... .|- ......||+.. |++...|+..|.++-
T Consensus 25 aa~~l~~~~-G~~-~~s~~~Ia~~a----gvs~~t~Y~~F~sK~ 62 (206)
T 3kz9_A 25 IALEVFARR-GIG-RGGHADIAEIA----QVSVATVFNYFPTRE 62 (206)
T ss_dssp HHHHHHHHS-CCS-SCCHHHHHHHH----TSCHHHHHHHCCSHH
T ss_pred HHHHHHHhc-Ccc-cccHHHHHHHh----CCCHHHHHHHcCCHH
Confidence 334447776 544 34566799999 999999999999974
No 115
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=22.07 E-value=40 Score=25.42 Aligned_cols=41 Identities=17% Similarity=0.421 Sum_probs=30.3
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHHHH
Q 027250 105 ILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRARL 151 (226)
Q Consensus 105 ~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRak~ 151 (226)
.....|... .|- ......||+.. |++..-|+.+|.|+-.=.
T Consensus 20 aA~~lf~e~-G~~-~~t~~~IA~~a----gvsk~tlY~~F~sKe~L~ 60 (192)
T 2fq4_A 20 ASYELLLES-GFK-AVTVDKIAERA----KVSKATIYKWWPNKAAVV 60 (192)
T ss_dssp HHHHHHHHH-CTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHc-Ccc-cccHHHHHHHc----CCCHHHHHHHCCCHHHHH
Confidence 334447776 554 34567899999 999999999999975443
No 116
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=21.87 E-value=39 Score=25.07 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=25.1
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 103 l~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
+..-...|... .| .......||+.. |++...|+..|.|+-.
T Consensus 18 l~aA~~lf~~~-G~-~~~t~~~IA~~a----gvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 18 LARAESTLEKD-GV-DGLSLRQLAREA----GVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHH-CG-GGCCHHHHHHHT----C-----CCCSSSSHHH
T ss_pred HHHHHHHHHhc-Ch-hhhhHHHHHHHh----CCChHHHHHHhCCHHH
Confidence 34445557666 54 334567899999 9999999999999744
No 117
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=21.86 E-value=1.1e+02 Score=21.00 Aligned_cols=43 Identities=19% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCCCCCCHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhh
Q 027250 93 RQRWTPTPAQLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQN 146 (226)
Q Consensus 93 r~Rt~~s~~Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQN 146 (226)
.....+++.++.+|.-.+ .+ +. ..+||..| ++++..|+....+
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-~G--~s----~~eIA~~L----~iS~~TV~~~~~~ 67 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-KG--FT----NQEIADAL----HLSKRSIEYSLTS 67 (90)
T ss_dssp ----CCCHHHHHHHHHHH-TT--CC----HHHHHHHH----TCCHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH-cC--CC----HHHHHHHH----CcCHHHHHHHHHH
Confidence 345579999999998776 33 22 45899999 9999999876654
No 118
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=21.70 E-value=32 Score=26.10 Aligned_cols=38 Identities=11% Similarity=0.328 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhH
Q 027250 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRR 148 (226)
Q Consensus 104 ~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRR 148 (226)
..-...|... .| . .....||+.. |++...|+..|.++-
T Consensus 20 ~aA~~lf~~~-G~-~-~t~~~IA~~a----gvs~~tlY~~F~sK~ 57 (196)
T 2qwt_A 20 EVAYDTFAAE-GL-G-VPMDEIARRA----GVGAGTVYRHFPTKQ 57 (196)
T ss_dssp HHHHHHHHHT-CT-T-SCHHHHHHHT----TSCHHHHHHHCSSHH
T ss_pred HHHHHHHHhc-CC-C-CCHHHHHHHh----CCCHHHHHHHCCCHH
Confidence 3444558888 77 5 6788899999 999999999999984
No 119
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=21.61 E-value=52 Score=25.60 Aligned_cols=42 Identities=17% Similarity=0.350 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 102 QLQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 102 Ql~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
-+......|... .|- ......||+.. |++...|+..|.++-.
T Consensus 35 Il~aA~~lf~~~-G~~-~~t~~~IA~~A----gvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 35 LLSVAVQVFIER-GYD-GTSMEHLSKAA----GISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHH-CTT-TCCHHHHHHHH----TSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHHc-Ccc-ccCHHHHHHHH----CCChhHHHHhCCCHHH
Confidence 345566667777 554 34567899999 9999999999999843
No 120
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=21.20 E-value=37 Score=25.68 Aligned_cols=40 Identities=13% Similarity=0.460 Sum_probs=30.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 104 QILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 104 ~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
......|... .|- ......||+.. |++...++.+|.++-.
T Consensus 38 ~aa~~l~~~~-G~~-~~tv~~Ia~~a----gvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 38 KVATELFREK-GYY-ATSLDDIADRI----GFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHT-CTT-TCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHc-Ccc-cCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 3444557776 544 44567899999 9999999999999854
No 121
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=20.99 E-value=42 Score=26.63 Aligned_cols=41 Identities=20% Similarity=0.367 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 103 LQILEHVYDECKGTPRKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 103 l~~Le~~F~~~~~~p~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
+......|... .| .......||+.. |++...|+..|.+|-.
T Consensus 49 l~AA~~lf~~~-G~-~~~t~~~IA~~a----Gvs~~tlY~~F~sK~~ 89 (255)
T 3g1o_A 49 LATAENLLEDR-PL-ADISVDDLAKGA----GISRPTFYFYFPSKEA 89 (255)
T ss_dssp HHHHHHHHTTS-CG-GGCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHc-CC-ccCcHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 33444456666 44 344567899999 9999999999999843
No 122
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=20.91 E-value=48 Score=24.55 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHhhCCCcccccccchhhhHH
Q 027250 118 RKQKIQDMTAELAKHGQISETNVYNWFQNRRA 149 (226)
Q Consensus 118 ~~~~r~~LA~~L~~~~~ls~~~V~vWFQNRRa 149 (226)
.......||+.. |++..-|+..|.++-.
T Consensus 31 ~~~t~~~Ia~~a----gvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 31 PTAALGDIAAAA----GVGRSTVHRYYPERTD 58 (190)
T ss_dssp TTCCHHHHHHHH----TCCHHHHHHHCSSHHH
T ss_pred CCCCHHHHHHHh----CCCHHHHHHHcCCHHH
Confidence 555677899999 9999999999999843
No 123
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.91 E-value=2e+02 Score=21.31 Aligned_cols=52 Identities=17% Similarity=0.266 Sum_probs=35.3
Q ss_pred CCCCCCCCHHHHHHHHHHH-hhcCCCCCHHHHHHHHH-HHHhhC-CCcccccccchhhh
Q 027250 92 ARQRWTPTPAQLQILEHVY-DECKGTPRKQKIQDMTA-ELAKHG-QISETNVYNWFQNR 147 (226)
Q Consensus 92 rr~Rt~~s~~Ql~~Le~~F-~~~~~~p~~~~r~~LA~-~L~~~~-~ls~~~V~vWFQNR 147 (226)
++.|..+|.+|...+-..+ +.+ +..+..+...-|. .. + +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~-~~~~q~~la~wa~~~f---~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQ-NRSGQQDLIEWFREKF---GKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSS-SCCCHHHHHHHHHHHH---SSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHH---CCCCcHHHHHHHHhhH
Confidence 5678889999999998888 556 5555543333222 32 1 57888899998663
Done!