Query 027251
Match_columns 226
No_of_seqs 176 out of 1181
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:10:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027251.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027251hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03003 Probable polygalactur 100.0 3.3E-53 7.1E-58 381.5 30.4 224 1-225 161-390 (456)
2 PLN02155 polygalacturonase 100.0 3.6E-53 7.8E-58 377.7 29.8 225 1-225 168-393 (394)
3 PLN02793 Probable polygalactur 100.0 5.2E-53 1.1E-57 382.0 30.4 224 1-225 200-424 (443)
4 PLN02188 polygalacturonase/gly 100.0 4.3E-52 9.3E-57 372.2 30.2 224 1-224 178-404 (404)
5 PLN03010 polygalacturonase 100.0 5.5E-52 1.2E-56 371.1 30.2 224 1-225 180-404 (409)
6 PLN02218 polygalacturonase ADP 100.0 2E-51 4.2E-56 370.3 29.0 217 1-224 215-431 (431)
7 PF00295 Glyco_hydro_28: Glyco 100.0 5.5E-47 1.2E-51 332.8 25.6 209 1-213 115-323 (326)
8 COG5434 PGU1 Endopygalactoruna 99.9 1.5E-26 3.2E-31 211.9 14.7 133 1-139 261-405 (542)
9 PLN02218 polygalacturonase ADP 99.9 1.5E-23 3.3E-28 189.5 22.9 181 3-208 194-393 (431)
10 PLN02155 polygalacturonase 99.9 8.5E-23 1.8E-27 182.7 23.3 174 3-200 147-339 (394)
11 PLN02793 Probable polygalactur 99.9 1.2E-22 2.5E-27 184.4 23.9 173 3-200 179-370 (443)
12 PLN03003 Probable polygalactur 99.9 1E-22 2.3E-27 184.1 23.1 182 3-209 140-343 (456)
13 PLN02188 polygalacturonase/gly 99.9 1.6E-22 3.5E-27 181.6 23.9 175 3-200 157-350 (404)
14 PLN03010 polygalacturonase 99.9 2.8E-22 6.2E-27 179.9 23.9 181 3-208 159-359 (409)
15 PF00295 Glyco_hydro_28: Glyco 99.9 9.9E-22 2.1E-26 172.9 24.1 170 4-200 95-284 (326)
16 COG5434 PGU1 Endopygalactoruna 99.7 3.2E-16 7E-21 144.1 16.3 151 3-171 240-398 (542)
17 PF03718 Glyco_hydro_49: Glyco 99.3 2.5E-10 5.4E-15 103.9 19.5 180 1-199 343-554 (582)
18 PF03718 Glyco_hydro_49: Glyco 98.8 1.5E-07 3.3E-12 86.0 13.8 174 2-197 321-513 (582)
19 smart00656 Amb_all Amb_all dom 98.6 2.8E-06 6E-11 69.4 15.9 99 3-102 33-144 (190)
20 TIGR03805 beta_helix_1 paralle 98.5 2.3E-06 5.1E-11 75.1 13.4 88 8-109 61-158 (314)
21 TIGR03805 beta_helix_1 paralle 98.5 2.8E-06 6.2E-11 74.6 13.8 121 2-132 78-203 (314)
22 PF13229 Beta_helix: Right han 98.4 4.3E-06 9.2E-11 64.6 10.8 116 4-140 3-121 (158)
23 PF00544 Pec_lyase_C: Pectate 98.4 2.8E-06 6E-11 69.9 9.2 100 2-102 37-158 (200)
24 PF12541 DUF3737: Protein of u 98.3 5.2E-06 1.1E-10 70.0 10.0 34 6-46 94-127 (277)
25 PF12541 DUF3737: Protein of u 98.3 3.9E-06 8.5E-11 70.7 8.1 105 6-136 114-229 (277)
26 COG3866 PelB Pectate lyase [Ca 98.2 3.6E-05 7.7E-10 66.2 13.1 41 30-70 118-164 (345)
27 PF13229 Beta_helix: Right han 98.1 4.7E-05 1E-09 58.6 10.4 93 29-139 1-96 (158)
28 smart00656 Amb_all Amb_all dom 97.8 0.00061 1.3E-08 55.6 13.0 94 30-132 33-144 (190)
29 PF12708 Pectate_lyase_3: Pect 97.8 0.0012 2.5E-08 54.2 14.2 21 120-140 185-206 (225)
30 PF05048 NosD: Periplasmic cop 97.8 0.00068 1.5E-08 56.7 12.9 59 6-70 40-98 (236)
31 PF05048 NosD: Periplasmic cop 97.8 0.00066 1.4E-08 56.8 12.4 114 4-140 16-130 (236)
32 COG3866 PelB Pectate lyase [Ca 97.7 0.00071 1.5E-08 58.3 12.3 101 2-102 117-229 (345)
33 TIGR03808 RR_plus_rpt_1 twin-a 97.3 0.0025 5.5E-08 58.0 10.6 52 6-57 111-165 (455)
34 TIGR03808 RR_plus_rpt_1 twin-a 97.2 0.02 4.3E-07 52.3 15.1 71 3-78 137-209 (455)
35 PF12708 Pectate_lyase_3: Pect 97.1 0.0098 2.1E-07 48.6 11.8 107 12-136 94-224 (225)
36 PF00544 Pec_lyase_C: Pectate 97.1 0.0021 4.5E-08 52.9 7.0 93 29-132 37-158 (200)
37 PLN02773 pectinesterase 96.0 0.34 7.4E-06 42.7 14.4 113 7-133 99-213 (317)
38 PF03211 Pectate_lyase: Pectat 95.2 0.92 2E-05 37.7 13.3 129 10-165 61-194 (215)
39 PLN02480 Probable pectinestera 94.2 1.8 3.8E-05 38.7 13.4 112 8-132 130-252 (343)
40 PLN02708 Probable pectinestera 94.1 1.9 4.1E-05 41.0 14.1 113 7-132 327-449 (553)
41 PF01095 Pectinesterase: Pecti 94.1 0.67 1.5E-05 40.5 10.4 112 8-132 85-202 (298)
42 PLN02665 pectinesterase family 93.8 4.3 9.3E-05 36.5 15.2 116 6-133 150-273 (366)
43 PLN02506 putative pectinestera 93.4 2.1 4.5E-05 40.5 13.1 114 6-132 315-434 (537)
44 PLN02170 probable pectinestera 93.3 7.3 0.00016 36.8 16.2 113 7-132 310-427 (529)
45 PLN02916 pectinesterase family 93.2 3.6 7.9E-05 38.5 14.2 113 7-132 274-392 (502)
46 PF09251 PhageP22-tail: Salmon 93.2 1.7 3.6E-05 39.7 11.4 57 60-132 311-367 (549)
47 PLN02698 Probable pectinestera 93.0 2.3 5E-05 39.8 12.6 115 7-133 267-386 (497)
48 PLN02713 Probable pectinestera 92.9 2.9 6.3E-05 39.8 13.3 113 8-132 338-455 (566)
49 PLN02682 pectinesterase family 92.9 5.2 0.00011 36.0 14.2 114 7-132 160-280 (369)
50 PLN02432 putative pectinestera 92.7 5.6 0.00012 34.7 13.8 112 7-131 91-204 (293)
51 PLN02933 Probable pectinestera 92.4 9.8 0.00021 36.0 15.9 114 7-132 302-420 (530)
52 PLN02301 pectinesterase/pectin 92.4 4 8.6E-05 38.8 13.4 113 7-132 320-438 (548)
53 PRK10123 wcaM putative colanic 92.4 0.55 1.2E-05 40.8 7.0 10 89-98 245-254 (464)
54 PRK10531 acyl-CoA thioesterase 92.4 4.8 0.0001 36.9 13.4 116 7-133 203-337 (422)
55 PLN02416 probable pectinestera 92.3 3.8 8.3E-05 38.8 13.2 112 8-132 315-432 (541)
56 PLN02201 probable pectinestera 92.3 6.6 0.00014 37.1 14.5 113 7-132 290-408 (520)
57 PLN02995 Probable pectinestera 92.1 3.8 8.3E-05 38.8 12.9 113 7-132 309-427 (539)
58 PLN02217 probable pectinestera 92.1 3.4 7.4E-05 40.1 12.8 68 8-77 335-403 (670)
59 PLN02488 probable pectinestera 92.0 8 0.00017 36.3 14.6 113 8-133 282-400 (509)
60 PLN02634 probable pectinestera 91.9 5.7 0.00012 35.6 13.1 113 8-132 147-266 (359)
61 PLN02745 Putative pectinestera 91.9 6.4 0.00014 37.8 14.2 113 7-132 369-487 (596)
62 PLN03043 Probable pectinestera 91.9 5.5 0.00012 37.7 13.7 113 7-132 310-428 (538)
63 PLN02304 probable pectinestera 91.7 8.3 0.00018 34.9 13.9 113 8-132 160-287 (379)
64 PLN02468 putative pectinestera 91.6 4.9 0.00011 38.3 13.1 113 7-132 342-460 (565)
65 PLN02313 Pectinesterase/pectin 91.5 6.1 0.00013 37.9 13.6 113 8-133 360-478 (587)
66 PLN02197 pectinesterase 91.3 6.5 0.00014 37.7 13.5 113 7-132 361-480 (588)
67 TIGR03804 para_beta_helix para 91.0 0.38 8.1E-06 29.2 3.5 39 30-69 1-39 (44)
68 PLN02484 probable pectinestera 90.9 7 0.00015 37.5 13.4 113 7-132 357-475 (587)
69 PLN02176 putative pectinestera 90.6 11 0.00023 33.7 13.5 112 8-132 120-246 (340)
70 PLN02990 Probable pectinestera 90.6 16 0.00036 34.9 15.7 113 8-133 345-463 (572)
71 PLN02314 pectinesterase 90.5 7.5 0.00016 37.3 13.3 114 7-133 362-481 (586)
72 PLN02497 probable pectinestera 90.5 10 0.00022 33.7 13.2 114 7-132 112-239 (331)
73 PLN02671 pectinesterase 90.2 14 0.00029 33.3 15.3 114 7-132 151-270 (359)
74 PF09251 PhageP22-tail: Salmon 90.0 11 0.00023 34.6 12.9 68 60-130 264-348 (549)
75 PF01696 Adeno_E1B_55K: Adenov 89.7 11 0.00024 34.2 12.8 44 36-80 120-165 (386)
76 PF07602 DUF1565: Protein of u 89.0 6 0.00013 33.6 10.2 126 31-168 91-224 (246)
77 COG3420 NosD Nitrous oxidase a 88.5 18 0.00038 32.4 12.9 68 2-70 121-191 (408)
78 TIGR03804 para_beta_helix para 88.5 1.1 2.4E-05 27.0 4.2 40 4-48 2-41 (44)
79 PRK10123 wcaM putative colanic 86.9 3.2 6.9E-05 36.2 7.3 18 4-21 262-279 (464)
80 PF01696 Adeno_E1B_55K: Adenov 85.9 4.6 0.0001 36.5 8.1 84 9-106 120-204 (386)
81 PF07602 DUF1565: Protein of u 85.0 23 0.0005 30.1 14.0 68 61-140 103-171 (246)
82 PLN02201 probable pectinestera 74.2 65 0.0014 30.5 11.9 37 160-197 397-440 (520)
83 PRK10531 acyl-CoA thioesterase 73.8 73 0.0016 29.3 11.8 43 90-132 238-283 (422)
84 PLN02432 putative pectinestera 72.9 58 0.0013 28.4 10.5 35 160-197 194-228 (293)
85 PLN02480 Probable pectinestera 72.1 66 0.0014 28.8 10.9 35 160-197 241-275 (343)
86 PLN02698 Probable pectinestera 71.3 49 0.0011 31.2 10.3 38 159-197 373-417 (497)
87 PLN02916 pectinesterase family 70.7 70 0.0015 30.2 11.1 38 159-197 380-424 (502)
88 PLN02301 pectinesterase/pectin 70.6 56 0.0012 31.2 10.6 36 160-196 427-469 (548)
89 PLN02713 Probable pectinestera 69.8 59 0.0013 31.1 10.6 38 159-197 443-487 (566)
90 PLN02217 probable pectinestera 66.5 51 0.0011 32.2 9.6 38 159-197 440-484 (670)
91 PLN02708 Probable pectinestera 66.2 76 0.0016 30.3 10.6 18 180-197 468-485 (553)
92 PLN02484 probable pectinestera 65.5 68 0.0015 30.9 10.1 38 159-197 463-507 (587)
93 PLN02170 probable pectinestera 65.2 1.1E+02 0.0024 29.1 11.3 35 159-196 415-449 (529)
94 PLN02313 Pectinesterase/pectin 64.6 70 0.0015 30.8 10.1 12 160-171 466-477 (587)
95 PF01095 Pectinesterase: Pecti 64.5 46 0.001 29.0 8.3 17 91-107 116-132 (298)
96 PLN02468 putative pectinestera 64.0 81 0.0018 30.2 10.3 37 159-196 448-487 (565)
97 PLN02416 probable pectinestera 63.9 71 0.0015 30.4 9.9 11 160-170 421-431 (541)
98 PLN02197 pectinesterase 63.5 74 0.0016 30.6 10.0 38 159-197 468-512 (588)
99 PLN02745 Putative pectinestera 63.3 1E+02 0.0023 29.7 11.0 38 159-197 475-519 (596)
100 PLN02933 Probable pectinestera 63.2 1.3E+02 0.0027 28.7 11.3 37 160-197 409-452 (530)
101 PLN02488 probable pectinestera 62.0 1.3E+02 0.0027 28.6 10.9 36 160-196 388-430 (509)
102 PLN02314 pectinesterase 62.0 95 0.0021 29.9 10.5 38 159-197 468-507 (586)
103 PLN03043 Probable pectinestera 61.8 1E+02 0.0022 29.4 10.5 11 160-170 417-427 (538)
104 PLN02990 Probable pectinestera 60.7 1.1E+02 0.0024 29.4 10.6 36 160-196 451-493 (572)
105 PLN02995 Probable pectinestera 60.0 94 0.002 29.6 10.0 38 159-197 415-459 (539)
106 smart00710 PbH1 Parallel beta- 59.9 14 0.00031 18.4 2.8 10 39-48 4-13 (26)
107 PLN02682 pectinesterase family 59.5 1.2E+02 0.0027 27.4 10.2 36 159-197 268-303 (369)
108 PLN02634 probable pectinestera 58.3 1.4E+02 0.003 27.0 10.2 34 160-196 255-288 (359)
109 PLN02773 pectinesterase 58.2 1.3E+02 0.0029 26.5 13.2 12 122-133 173-184 (317)
110 PLN02506 putative pectinestera 57.6 1.1E+02 0.0024 29.1 10.0 36 159-197 422-457 (537)
111 PF14592 Chondroitinas_B: Chon 48.6 1.8E+02 0.004 26.8 9.6 64 105-178 265-328 (425)
112 PF14592 Chondroitinas_B: Chon 40.7 1.2E+02 0.0025 28.0 7.1 26 115-140 305-330 (425)
113 COG4677 PemB Pectin methyleste 40.5 1.1E+02 0.0023 27.4 6.5 57 35-101 219-285 (405)
114 PLN02304 probable pectinestera 37.3 3.2E+02 0.007 24.8 11.1 34 160-196 276-309 (379)
115 PF08480 Disaggr_assoc: Disagg 35.8 2.4E+02 0.0053 23.0 11.3 14 89-102 63-76 (198)
116 PLN02497 probable pectinestera 34.9 3.3E+02 0.0072 24.2 10.5 35 160-197 228-262 (331)
117 COG3420 NosD Nitrous oxidase a 32.0 2.8E+02 0.0061 25.0 7.7 12 59-70 224-235 (408)
118 KOG0641 WD40 repeat protein [G 22.6 1.9E+02 0.0041 24.6 4.8 49 67-124 94-144 (350)
119 PF08480 Disaggr_assoc: Disagg 21.1 4.7E+02 0.01 21.4 8.0 12 60-71 64-75 (198)
120 PF05342 Peptidase_M26_N: M26 21.1 63 0.0014 27.5 1.8 18 154-171 210-227 (250)
No 1
>PLN03003 Probable polygalacturonase At3g15720
Probab=100.00 E-value=3.3e-53 Score=381.53 Aligned_cols=224 Identities=45% Similarity=0.770 Sum_probs=204.7
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
|||+++.+|+||+|++++|.+|..++||||||+.+|+||+|+||+|.++||||++|+|++||+|+||+|..+|||+|||+
T Consensus 161 ~w~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~S~nV~I~n~~I~tGDDCIaiksgs~NI~I~n~~c~~GHGISIGSl 240 (456)
T PLN03003 161 MAHIHISECNYVTISSLRINAPESSPNTDGIDVGASSNVVIQDCIIATGDDCIAINSGTSNIHISGIDCGPGHGISIGSL 240 (456)
T ss_pred cEEEEEeccccEEEEEEEEeCCCCCCCCCcEeecCcceEEEEecEEecCCCeEEeCCCCccEEEEeeEEECCCCeEEeec
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCC--CCCCCCCceEE
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNG--NCPGQASGVKI 158 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~--~~~~~~~~~~i 158 (226)
|++...+.|+||+|+||++.++.+|+||||++| ++|.|+||+|+||+|+++.+||.|+++|++... .+...++.+.|
T Consensus 241 g~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G-g~G~v~nItf~nI~m~nV~~pI~Idq~Y~~~~~~~~~~~~~s~v~I 319 (456)
T PLN03003 241 GKDGETATVENVCVQNCNFRGTMNGARIKTWQG-GSGYARMITFNGITLDNVENPIIIDQFYNGGDSDNAKDRKSSAVEV 319 (456)
T ss_pred cCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC-CCeEEEEEEEEeEEecCccceEEEEcccCCCCCCCcccCCCCCcEE
Confidence 876555679999999999999999999999988 689999999999999999999999999975422 12233457899
Q ss_pred EeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCC----CCcceeeeecccCCcceeeCCCCCC
Q 027251 159 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN----QPAEASCTNADGSASGFVLPNSCLK 225 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~----~~~~~~C~~~~~~~~~~~~~~~~~~ 225 (226)
+||+|+||+++.....++.|.|+++.||+||+|+||+++.+. ..+.+.|.|++|...++++|+||++
T Consensus 320 snI~f~NI~GTs~~~~ai~l~Cs~~~PC~nI~l~ni~l~~~~~g~~~~~~~~C~Nv~G~~~~~~~~~~C~~ 390 (456)
T PLN03003 320 SKVVFSNFIGTSKSEYGVDFRCSERVPCTEIFLRDMKIETASSGSGQVAQGQCLNVRGASTIAVPGLECLE 390 (456)
T ss_pred EeEEEEeEEEEeCccceEEEEeCCCCCeeeEEEEEEEEEecCCCCCCccCcEEeccccccCceECCCCccc
Confidence 999999999987767789999999999999999999998763 2367999999999999999999987
No 2
>PLN02155 polygalacturonase
Probab=100.00 E-value=3.6e-53 Score=377.72 Aligned_cols=225 Identities=59% Similarity=1.038 Sum_probs=207.4
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
|||+++.+|+||+|++++|.+|.+++||||||+.+|+||+|+||+|.++||||++|++++||+|+||+|..+||++|||+
T Consensus 168 ~w~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~s~nV~I~~~~I~~gDDcIaik~gs~nI~I~n~~c~~GhGisIGS~ 247 (394)
T PLN02155 168 VSHMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQFSTGVTFTGSTVQTGDDCVAIGPGTRNFLITKLACGPGHGVSIGSL 247 (394)
T ss_pred CeEEEEECeeeEEEEEEEEECCCCCCCCCccccccceeEEEEeeEEecCCceEEcCCCCceEEEEEEEEECCceEEeccc
Confidence 79999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 160 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 160 (226)
|++.+.++|+||+|+||+|.++.+|+||||+.+.++|.|+||+|+||+|+++++||.|++.|++....|+...+.+.|+|
T Consensus 248 g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~~~gG~v~nI~f~ni~m~~v~~pI~i~q~Y~~~~~~~~~~~s~v~i~~ 327 (394)
T PLN02155 248 AKELNEDGVENVTVSSSVFTGSQNGVRIKSWARPSTGFVRNVFFQDLVMKNVENPIIIDQNYCPTHEGCPNEYSGVKISQ 327 (394)
T ss_pred cccCCCCcEEEEEEEeeEEeCCCcEEEEEEecCCCCEEEEEEEEEeEEEcCccccEEEEecccCCCCCCcCCCCCeEEEE
Confidence 88755788999999999999999999999986536899999999999999999999999999865444554455689999
Q ss_pred EEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCC-CCcceeeeecccCCcceeeCCCCCC
Q 027251 161 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLK 225 (226)
Q Consensus 161 I~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~ 225 (226)
|+|+||+++.....+++|.|.++.||+||+|+||+++.++ ..+.+.|.|++|...|+++|+||+.
T Consensus 328 It~~ni~gt~~~~~a~~l~c~~~~pc~~I~l~nv~i~~~~~~~~~~~C~n~~G~~~~~~~p~~c~~ 393 (394)
T PLN02155 328 VTYKNIQGTSATQEAMKLVCSKSSPCTGITLQDIKLTYNKGTPATSFCFNAVGKSLGVIQPTSCLN 393 (394)
T ss_pred EEEEeeEEEecCCceEEEEeCCCCCEEEEEEEeeEEEecCCCccCcEEeccEeEEcccCCcccccC
Confidence 9999999998766789999999999999999999999886 3458999999999999999999975
No 3
>PLN02793 Probable polygalacturonase
Probab=100.00 E-value=5.2e-53 Score=381.98 Aligned_cols=224 Identities=47% Similarity=0.828 Sum_probs=207.5
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
|||+++.+|+||+|++++|.+|...+||||||+.+|+||+|+||+|+++||||++|++++||+|+||+|..+|||+|||+
T Consensus 200 ~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~s~nI~I~n~~c~~GhGisIGSl 279 (443)
T PLN02793 200 QMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGNSSRIKIRNIACGPGHGISIGSL 279 (443)
T ss_pred CeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCCcCCEEEEEeEEeCCccEEEecc
Confidence 79999999999999999999998889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 160 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 160 (226)
|++.+.+.|+||+|+||+|.++.+|+|||+++| ++|.|+||+|+||+|+++.+||.|+++|+.....|..+++.+.|+|
T Consensus 280 g~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g-~~G~v~nItf~ni~m~nv~~pI~I~q~Y~~~~~~~~~~ts~v~I~n 358 (443)
T PLN02793 280 GKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG-GSGNASKITFQNIFMENVSNPIIIDQYYCDSRKPCANQTSAVKVEN 358 (443)
T ss_pred cCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC-CCEEEEEEEEEeEEEecCCceEEEEeeecCCCCCCCCCCCCeEEEe
Confidence 987767889999999999999999999999988 6899999999999999999999999999764444544556789999
Q ss_pred EEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCC-CCcceeeeecccCCcceeeCCCCCC
Q 027251 161 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLK 225 (226)
Q Consensus 161 I~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~ 225 (226)
|+|+||+++.....++.|.|.++.||+||+|+||++..++ +...+.|.+++|...|.+.|+||++
T Consensus 359 I~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~~~~~~C~n~~g~~~~~~~p~~C~~ 424 (443)
T PLN02793 359 ISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGDFTESFCWEAYGSSSGQVYPPPCFS 424 (443)
T ss_pred EEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCCCCCcEEEccEEeECCeEcCCcccc
Confidence 9999999998655689999999999999999999999875 4457899999999999999999985
No 4
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=100.00 E-value=4.3e-52 Score=372.17 Aligned_cols=224 Identities=47% Similarity=0.848 Sum_probs=204.0
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
|||+++.+|+||+|++++|.++.+++||||||+.+|+||+|+||+|.++||||++|++++||+|+|++|..+|||+|||.
T Consensus 178 ~w~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~s~nV~I~n~~I~~GDDcIaiksg~~nI~I~n~~c~~ghGisiGSl 257 (404)
T PLN02188 178 FFHIALVECRNFKGSGLKISAPSDSPNTDGIHIERSSGVYISDSRIGTGDDCISIGQGNSQVTITRIRCGPGHGISVGSL 257 (404)
T ss_pred CeEEEEEccccEEEEEEEEeCCCCCCCCCcEeeeCcccEEEEeeEEeCCCcEEEEccCCccEEEEEEEEcCCCcEEeCCC
Confidence 79999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEE
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKIS 159 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~ 159 (226)
|++++.++|+||+|+||+|.++.+|+||||+.+. ++|.|+||+|+||+|+++++||.|+++|++.....+..+..+.|+
T Consensus 258 G~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~~~~G~v~nI~f~ni~m~~v~~pI~i~~~Y~~~~~~~~~~~s~v~I~ 337 (404)
T PLN02188 258 GRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANSPGKSAATNMTFENIVMNNVTNPIIIDQKYCPFYSCESKYPSGVTLS 337 (404)
T ss_pred CCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCCCCceEEEEEEEEeEEecCccceEEEEccccCCCCCCcCCCCCcEEE
Confidence 8877778899999999999999999999999752 458999999999999999999999999976432112223568999
Q ss_pred eEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCC--CCcceeeeecccCCcceeeCCCCC
Q 027251 160 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN--QPAEASCTNADGSASGFVLPNSCL 224 (226)
Q Consensus 160 nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ 224 (226)
||+|+||+++.....++.|.|.++.||+||+|+||+++.++ +...+.|++++|...|.++|+||+
T Consensus 338 nIt~~nI~gt~~~~~a~~l~cs~~~pc~ni~~~nV~i~~~~g~~~~~~~C~nv~g~~~g~~~p~~C~ 404 (404)
T PLN02188 338 DIYFKNIRGTSSSQVAVLLKCSRGVPCQGVYLQDVHLDLSSGEGGTSSSCENVRAKYIGTQIPPPCP 404 (404)
T ss_pred eEEEEEEEEEecCceEEEEEECCCCCEeeEEEEeeEEEecCCCCCcCceeEcceeEEcccCcCCCCC
Confidence 99999999998766689999999999999999999999874 345799999999999999999996
No 5
>PLN03010 polygalacturonase
Probab=100.00 E-value=5.5e-52 Score=371.06 Aligned_cols=224 Identities=40% Similarity=0.729 Sum_probs=207.8
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
|||+++.+|+||+|++++|.++..++||||||+.+|+||+|+||+|.++||||++|+|++|+.|+++.|..+|||+|||+
T Consensus 180 ~~~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~s~nV~I~n~~I~~gDDcIaiksgs~ni~I~~~~C~~gHGisIGS~ 259 (409)
T PLN03010 180 KNHISIKTCNYVAISKINILAPETSPNTDGIDISYSTNINIFDSTIQTGDDCIAINSGSSNINITQINCGPGHGISVGSL 259 (409)
T ss_pred ceEEEEeccccEEEEEEEEeCCCCCCCCCceeeeccceEEEEeeEEecCCCeEEecCCCCcEEEEEEEeECcCCEEEccC
Confidence 79999999999999999999988889999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 160 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 160 (226)
|+......|+||+|+||+|.++.+|+|||++.| ++|.|+||+|+||+|+++++||.|+++|+.....|..+++.+.|+|
T Consensus 260 g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G-~~G~v~nItf~nI~m~~v~~pI~I~q~Y~~~~~~~~~~~s~v~Isd 338 (409)
T PLN03010 260 GADGANAKVSDVHVTHCTFNQTTNGARIKTWQG-GQGYARNISFENITLINTKNPIIIDQQYIDKGKLDATKDSAVAISN 338 (409)
T ss_pred CCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC-CCEEEEEeEEEeEEEecCCccEEEEeeccCCCCCCCCCCCceEEEe
Confidence 876545669999999999999999999999988 7899999999999999999999999999875444544567899999
Q ss_pred EEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCC-CCcceeeeecccCCcceeeCCCCCC
Q 027251 161 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKN-QPAEASCTNADGSASGFVLPNSCLK 225 (226)
Q Consensus 161 I~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~-~~~~~~C~~~~~~~~~~~~~~~~~~ 225 (226)
|+|+||+++.....++.|.|++..||+||+|+||+++.++ +.+.+.|.|+.+...++++|++|+|
T Consensus 339 i~~~ni~GT~~~~~~i~l~Cs~~~pC~ni~~~~v~l~~~~g~~~~~~C~nv~g~~~~~~~~~~C~~ 404 (409)
T PLN03010 339 VKYVGFRGTTSNENAITLKCSAITHCKDVVMDDIDVTMENGEKPKVECQNVEGESSDTDLMRDCFK 404 (409)
T ss_pred EEEEeeEEEeCCCccEEEEeCCCCCEeceEEEEEEEEecCCCccceEeeCccccccCCCCCCcccc
Confidence 9999999997766799999999999999999999999876 4568999999999999999999997
No 6
>PLN02218 polygalacturonase ADPG
Probab=100.00 E-value=2e-51 Score=370.31 Aligned_cols=217 Identities=47% Similarity=0.867 Sum_probs=199.6
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
|||+++.+|+||+|+|++|.+|.+++||||||+.+|+||+|+||+|.+|||||++|+|++||+|+||+|..+|||+|||+
T Consensus 215 ~w~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~ss~nV~I~n~~I~tGDDcIaIksgs~nI~I~n~~c~~GHGisIGS~ 294 (431)
T PLN02218 215 QIQISIEKCSNVQVSNVVVTAPADSPNTDGIHITNTQNIRVSNSIIGTGDDCISIESGSQNVQINDITCGPGHGISIGSL 294 (431)
T ss_pred CEEEEEEceeeEEEEEEEEeCCCCCCCCCcEeecccceEEEEccEEecCCceEEecCCCceEEEEeEEEECCCCEEECcC
Confidence 79999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 160 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 160 (226)
|++...+.|+||+|+||++.++.+|+||||++| ++|.|+||+|+||+|+++++||.|++.|++.. .|+.+++.+.|+|
T Consensus 295 g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~G-g~G~v~nI~f~ni~m~~V~~pI~Idq~Y~~~~-~~~~~~s~v~I~n 372 (431)
T PLN02218 295 GDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQG-GSGTASNIIFQNIQMENVKNPIIIDQDYCDKS-KCTSQQSAVQVKN 372 (431)
T ss_pred CCCCCCceEEEEEEEccEEecCCcceEEeecCC-CCeEEEEEEEEeEEEEcccccEEEEeeccCCC-CCCCCCCCeEEEE
Confidence 876556789999999999999999999999988 78999999999999999999999999998643 3444456789999
Q ss_pred EEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCCCCcceeeeecccCCcceeeCCCCC
Q 027251 161 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGSASGFVLPNSCL 224 (226)
Q Consensus 161 I~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 224 (226)
|+|+||+++.+...++.|.|.++.||+||+|+||++... ...|+|+++...|+++| +|.
T Consensus 373 I~~~NI~gtsa~~~ai~l~cs~~~pc~nI~l~nV~i~~~----~~~c~n~~~~~~~~~~p-~c~ 431 (431)
T PLN02218 373 VVYRNISGTSASDVAITFNCSKNYPCQGIVLDNVNIKGG----KATCTNANVVDKGAVSP-QCN 431 (431)
T ss_pred EEEEeEEEEecCCcEEEEEECCCCCEeeEEEEeEEEECC----eeeEEEeeEEEcccCCC-CCC
Confidence 999999999776668999999999999999999999853 56899999999988776 884
No 7
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=100.00 E-value=5.5e-47 Score=332.82 Aligned_cols=209 Identities=41% Similarity=0.783 Sum_probs=185.3
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
+||+++.+|+||+|++++|.++...+|+||||+.+|+||+|+||+|+++||||++|+++.||+|+||+|..+||++|||+
T Consensus 115 ~w~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~s~nv~I~n~~i~~gDD~Iaiks~~~ni~v~n~~~~~ghGisiGS~ 194 (326)
T PF00295_consen 115 FWHIHINDCDNVTISNITINNPANSPNTDGIDIDSSKNVTIENCFIDNGDDCIAIKSGSGNILVENCTCSGGHGISIGSE 194 (326)
T ss_dssp SESEEEESEEEEEEESEEEEEGGGCTS--SEEEESEEEEEEESEEEESSSESEEESSEECEEEEESEEEESSSEEEEEEE
T ss_pred eeEEEEEccCCeEEcceEEEecCCCCCcceEEEEeeeEEEEEEeecccccCcccccccccceEEEeEEEeccccceeeec
Confidence 79999999999999999999987789999999999999999999999999999999988899999999999999999999
Q ss_pred ccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEe
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISD 160 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~n 160 (226)
+.......|+||+|+||++.++.+|++||++++ ++|.|+||+||||+|+++.+||.|++.|.+. ..++.++..+.|+|
T Consensus 195 ~~~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~~-~~G~v~nI~f~ni~~~~v~~pi~i~~~y~~~-~~~~~~~~~~~i~n 272 (326)
T PF00295_consen 195 GSGGSQNDIRNVTFENCTIINTDNGIRIKTWPG-GGGYVSNITFENITMENVKYPIFIDQDYRDG-GPCGKPPSGVSISN 272 (326)
T ss_dssp SSSSE--EEEEEEEEEEEEESESEEEEEEEETT-TSEEEEEEEEEEEEEEEESEEEEEEEEECTT-EESSCSSSSSEEEE
T ss_pred cCCccccEEEeEEEEEEEeeccceEEEEEEecc-cceEEeceEEEEEEecCCceEEEEEeccccc-cccCcccCCceEEE
Confidence 754323469999999999999999999999987 7899999999999999999999999999872 22333345679999
Q ss_pred EEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEEeCCCCcceeeeecccC
Q 027251 161 VIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLIYKNQPAEASCTNADGS 213 (226)
Q Consensus 161 I~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~~~~~~~~~~C~~~~~~ 213 (226)
|+|+||+++.....+++|.|.++.||+||+|+||+++. + ...+.|+|++..
T Consensus 273 I~~~nitg~~~~~~~i~i~~~~~~~~~ni~f~nv~i~~-g-~~~~~c~nv~~~ 323 (326)
T PF00295_consen 273 ITFRNITGTSAGSSAISIDCSPGSPCSNITFENVNITG-G-KKPAQCKNVPSG 323 (326)
T ss_dssp EEEEEEEEEESTSEEEEEE-BTTSSEEEEEEEEEEEES-S-BSESEEBSCCTT
T ss_pred EEEEeeEEEeccceEEEEEECCcCcEEeEEEEeEEEEc-C-CcCeEEECCCCC
Confidence 99999999988767999999999999999999999998 3 668999999865
No 8
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.94 E-value=1.5e-26 Score=211.86 Aligned_cols=133 Identities=34% Similarity=0.586 Sum_probs=123.0
Q ss_pred CcEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCC-----------ceeEEEEeeEE
Q 027251 1 MFHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPG-----------ATNLWIENVAC 69 (226)
Q Consensus 1 ~w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksg-----------s~nV~I~n~~~ 69 (226)
+|++|+..|+|++++|++|.+.... |+||||+.+|+||+|++|+|.++||||++|+| ++||+|+||++
T Consensus 261 ~~~~h~~~~~nl~~~nl~I~~~~~~-NtDG~d~~sc~NvlI~~~~fdtgDD~I~iksg~~~~~~~~~~~~~~i~i~~c~~ 339 (542)
T COG5434 261 LWTVHPVDCDNLTFRNLTIDANRFD-NTDGFDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYF 339 (542)
T ss_pred cEEEeeecccCceecceEEECCCCC-CCCccccccceeEEEeccEEecCCceEEeecccCCcccccccccccEEEeccee
Confidence 5999999999999999999996544 99999999999999999999999999999985 58999999999
Q ss_pred cCCce-eEEeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEE
Q 027251 70 GPGHG-ISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIID 139 (226)
Q Consensus 70 ~~~~g-i~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~ 139 (226)
..+|| +.+||| +.++++||+++||.|.++.+|||||+..+ ++|.++||+|+++.|.++..+..|.
T Consensus 340 ~~ghG~~v~Gse----~~ggv~ni~ved~~~~~~d~GLRikt~~~-~gG~v~nI~~~~~~~~nv~t~~~i~ 405 (542)
T COG5434 340 SSGHGGLVLGSE----MGGGVQNITVEDCVMDNTDRGLRIKTNDG-RGGGVRNIVFEDNKMRNVKTKLSIN 405 (542)
T ss_pred cccccceEeeee----cCCceeEEEEEeeeeccCcceeeeeeecc-cceeEEEEEEecccccCcccceeee
Confidence 99996 999999 78999999999999999999999999988 7899999999999999996554444
No 9
>PLN02218 polygalacturonase ADPG
Probab=99.92 E-value=1.5e-23 Score=189.48 Aligned_cols=181 Identities=19% Similarity=0.303 Sum_probs=148.6
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec-----CCCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~-----~DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
.+.|.+|+|++|+++++.+++.+ -+++..|+||+|+++.|.+ .-|+|.+.+ |+||+|+||++.++| +|+
T Consensus 194 ~i~f~~~~nv~I~gitl~nSp~w----~i~~~~~~nV~i~~v~I~a~~~spNTDGIdi~s-s~nV~I~n~~I~tGDDcIa 268 (431)
T PLN02218 194 ALTFYNSKSLIVKNLRVRNAQQI----QISIEKCSNVQVSNVVVTAPADSPNTDGIHITN-TQNIRVSNSIIGTGDDCIS 268 (431)
T ss_pred EEEEEccccEEEeCeEEEcCCCE----EEEEEceeeEEEEEEEEeCCCCCCCCCcEeecc-cceEEEEccEEecCCceEE
Confidence 47899999999999999997654 3899999999999999987 469999998 999999999999886 699
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCc
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASG 155 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~ 155 (226)
|+|. .+||+|+||+|.. ++|+.|+|.... ..+.|+||+|+|+++.+..++++|+++- .+.
T Consensus 269 Iksg--------s~nI~I~n~~c~~-GHGisIGS~g~~~~~~~V~nV~v~n~~~~~t~nGvRIKT~~----------Gg~ 329 (431)
T PLN02218 269 IESG--------SQNVQINDITCGP-GHGISIGSLGDDNSKAFVSGVTVDGAKLSGTDNGVRIKTYQ----------GGS 329 (431)
T ss_pred ecCC--------CceEEEEeEEEEC-CCCEEECcCCCCCCCceEEEEEEEccEEecCCcceEEeecC----------CCC
Confidence 9873 5899999999964 689999998431 2468999999999999999999999842 135
Q ss_pred eEEEeEEEEeEEEeccCceeEEEecc-------C----CCCeecEEEEeEEEEeCC-CCcceeee
Q 027251 156 VKISDVIYQDIHGTSATEVGVKLDCS-------S----KNPCTGISLEDVKLIYKN-QPAEASCT 208 (226)
Q Consensus 156 ~~i~nI~~~ni~~~~~~~~~~~i~~~-------~----~~~~~ni~f~nv~i~~~~-~~~~~~C~ 208 (226)
+.++||+|+||++.... .|+.|... + ...++||+|+||+.+... .+..+.|+
T Consensus 330 G~v~nI~f~ni~m~~V~-~pI~Idq~Y~~~~~~~~~~s~v~I~nI~~~NI~gtsa~~~ai~l~cs 393 (431)
T PLN02218 330 GTASNIIFQNIQMENVK-NPIIIDQDYCDKSKCTSQQSAVQVKNVVYRNISGTSASDVAITFNCS 393 (431)
T ss_pred eEEEEEEEEeEEEEccc-ccEEEEeeccCCCCCCCCCCCeEEEEEEEEeEEEEecCCcEEEEEEC
Confidence 79999999999999875 48888521 0 123899999999998764 22334443
No 10
>PLN02155 polygalacturonase
Probab=99.92 E-value=8.5e-23 Score=182.72 Aligned_cols=174 Identities=18% Similarity=0.240 Sum_probs=145.1
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecC-----CCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTG-----DDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~-----DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
.+.+.+|+|++|+++++++++.+ -+++..|+||+|+++.|.+. -|+|.+.+ |+||+|+||++..+| +|+
T Consensus 147 ~i~~~~~~nv~i~gitl~nSp~w----~i~~~~~~nv~i~~v~I~~p~~~~NtDGidi~~-s~nV~I~~~~I~~gDDcIa 221 (394)
T PLN02155 147 SISFNSAKDVIISGVKSMNSQVS----HMTLNGCTNVVVRNVKLVAPGNSPNTDGFHVQF-STGVTFTGSTVQTGDDCVA 221 (394)
T ss_pred ceeEEEeeeEEEECeEEEcCCCe----EEEEECeeeEEEEEEEEECCCCCCCCCcccccc-ceeEEEEeeEEecCCceEE
Confidence 37899999999999999997643 38899999999999999873 38999998 999999999999876 799
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCc
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASG 155 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~ 155 (226)
|++ +.+||+|+|++|.. ++|+.|+|.... ..+.|+||+++|+++.+..++++|+++.. .++
T Consensus 222 ik~--------gs~nI~I~n~~c~~-GhGisIGS~g~~~~~~~V~nV~v~n~~~~~t~~GirIKT~~~---------~~g 283 (394)
T PLN02155 222 IGP--------GTRNFLITKLACGP-GHGVSIGSLAKELNEDGVENVTVSSSVFTGSQNGVRIKSWAR---------PST 283 (394)
T ss_pred cCC--------CCceEEEEEEEEEC-CceEEeccccccCCCCcEEEEEEEeeEEeCCCcEEEEEEecC---------CCC
Confidence 976 25899999999976 589999997422 25789999999999999999999998422 135
Q ss_pred eEEEeEEEEeEEEeccCceeEEEec---c-----C----CCCeecEEEEeEEEEeCC
Q 027251 156 VKISDVIYQDIHGTSATEVGVKLDC---S-----S----KNPCTGISLEDVKLIYKN 200 (226)
Q Consensus 156 ~~i~nI~~~ni~~~~~~~~~~~i~~---~-----~----~~~~~ni~f~nv~i~~~~ 200 (226)
+.++||+|+||++.... .|+.|.. . + ...++||+|+||+.+...
T Consensus 284 G~v~nI~f~ni~m~~v~-~pI~i~q~Y~~~~~~~~~~~s~v~i~~It~~ni~gt~~~ 339 (394)
T PLN02155 284 GFVRNVFFQDLVMKNVE-NPIIIDQNYCPTHEGCPNEYSGVKISQVTYKNIQGTSAT 339 (394)
T ss_pred EEEEEEEEEeEEEcCcc-ccEEEEecccCCCCCCcCCCCCeEEEEEEEEeeEEEecC
Confidence 78999999999999875 4888842 1 1 124899999999998764
No 11
>PLN02793 Probable polygalacturonase
Probab=99.91 E-value=1.2e-22 Score=184.44 Aligned_cols=173 Identities=21% Similarity=0.289 Sum_probs=144.2
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec-----CCCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~-----~DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
.+.|.+|+|++|+++++++++.+ -+.+..|+||+|+++.|.+ .-|+|.+.+ |+||+|+||++..+| +|+
T Consensus 179 ~i~f~~~~nv~v~gitl~nSp~~----~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~-s~nV~I~n~~I~~gDDcIa 253 (443)
T PLN02793 179 AITFHKCKDLRVENLNVIDSQQM----HIAFTNCRRVTISGLKVIAPATSPNTDGIHISA-SRGVVIKDSIVRTGDDCIS 253 (443)
T ss_pred EEEEEeeccEEEECeEEEcCCCe----EEEEEccCcEEEEEEEEECCCCCCCCCcEeeec-cceEEEEeCEEeCCCCeEE
Confidence 47889999999999999997643 3889999999999999987 458999998 999999999999876 699
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCc
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASG 155 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~ 155 (226)
|++. .+||+|+||++.. .+||.|+|.... ..+.|+||+|+|+++.+..++++|+++.+ +.
T Consensus 254 ik~~--------s~nI~I~n~~c~~-GhGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g----------~~ 314 (443)
T PLN02793 254 IVGN--------SSRIKIRNIACGP-GHGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQG----------GS 314 (443)
T ss_pred ecCC--------cCCEEEEEeEEeC-CccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCC----------CC
Confidence 9762 5899999999965 579999997431 24679999999999999999999998522 35
Q ss_pred eEEEeEEEEeEEEeccCceeEEEec---cCC---------CCeecEEEEeEEEEeCC
Q 027251 156 VKISDVIYQDIHGTSATEVGVKLDC---SSK---------NPCTGISLEDVKLIYKN 200 (226)
Q Consensus 156 ~~i~nI~~~ni~~~~~~~~~~~i~~---~~~---------~~~~ni~f~nv~i~~~~ 200 (226)
+.++||+|+||++.... .|+.|.. ... ..++||+|+||+.+...
T Consensus 315 G~v~nItf~ni~m~nv~-~pI~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~ 370 (443)
T PLN02793 315 GNASKITFQNIFMENVS-NPIIIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSAT 370 (443)
T ss_pred EEEEEEEEEeEEEecCC-ceEEEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcc
Confidence 78999999999999875 4888853 211 24899999999998743
No 12
>PLN03003 Probable polygalacturonase At3g15720
Probab=99.91 E-value=1e-22 Score=184.07 Aligned_cols=182 Identities=18% Similarity=0.264 Sum_probs=148.6
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec-----CCCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~-----~DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
.+.|.+|+|++|+++++.+++.+ -+++..|+||+|+++.|.+ .-|+|.+.+ |+||+|+||++.++| +|+
T Consensus 140 ~l~f~~~~nv~I~gitl~NSp~w----~i~i~~c~nV~i~~l~I~ap~~spNTDGIDi~~-S~nV~I~n~~I~tGDDCIa 214 (456)
T PLN03003 140 ALKFRSCNNLRLSGLTHLDSPMA----HIHISECNYVTISSLRINAPESSPNTDGIDVGA-SSNVVIQDCIIATGDDCIA 214 (456)
T ss_pred EEEEEecCCcEEeCeEEecCCcE----EEEEeccccEEEEEEEEeCCCCCCCCCcEeecC-cceEEEEecEEecCCCeEE
Confidence 47899999999999999997654 3899999999999999997 358999998 999999999999876 799
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCc
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASG 155 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~ 155 (226)
|++. .+||+|+||+|.. .+||.|+|.... ..+.|+||+|+|+++.+..++++|+++.+ +.
T Consensus 215 iksg--------s~NI~I~n~~c~~-GHGISIGSlg~~g~~~~V~NV~v~n~~~~~T~nGvRIKT~~G----------g~ 275 (456)
T PLN03003 215 INSG--------TSNIHISGIDCGP-GHGISIGSLGKDGETATVENVCVQNCNFRGTMNGARIKTWQG----------GS 275 (456)
T ss_pred eCCC--------CccEEEEeeEEEC-CCCeEEeeccCCCCcceEEEEEEEeeEEECCCcEEEEEEeCC----------CC
Confidence 9873 5899999999965 689999998431 13579999999999999999999998422 35
Q ss_pred eEEEeEEEEeEEEeccCceeEEEec---c--C---------CCCeecEEEEeEEEEeCC-CCcceeeee
Q 027251 156 VKISDVIYQDIHGTSATEVGVKLDC---S--S---------KNPCTGISLEDVKLIYKN-QPAEASCTN 209 (226)
Q Consensus 156 ~~i~nI~~~ni~~~~~~~~~~~i~~---~--~---------~~~~~ni~f~nv~i~~~~-~~~~~~C~~ 209 (226)
+.++||+|+||++.... .|+.|.. . + ...++||+|+||+.+... .+..+.|+.
T Consensus 276 G~v~nItf~nI~m~nV~-~pI~Idq~Y~~~~~~~~~~~~~s~v~IsnI~f~NI~GTs~~~~ai~l~Cs~ 343 (456)
T PLN03003 276 GYARMITFNGITLDNVE-NPIIIDQFYNGGDSDNAKDRKSSAVEVSKVVFSNFIGTSKSEYGVDFRCSE 343 (456)
T ss_pred eEEEEEEEEeEEecCcc-ceEEEEcccCCCCCCCcccCCCCCcEEEeEEEEeEEEEeCccceEEEEeCC
Confidence 78999999999998875 4888842 1 1 124899999999997665 233455543
No 13
>PLN02188 polygalacturonase/glycoside hydrolase family protein
Probab=99.91 E-value=1.6e-22 Score=181.56 Aligned_cols=175 Identities=17% Similarity=0.240 Sum_probs=144.7
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec-----CCCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~-----~DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
.+.|.+|+|++|+++++.+++.+ .+++..|+||+|+++.|.+ .-|+|.+.+ |+||+|+||++..+| +|+
T Consensus 157 ~i~f~~~~nv~i~gitl~nSp~w----~i~~~~~~~v~i~~v~I~~~~~spNtDGidi~~-s~nV~I~n~~I~~GDDcIa 231 (404)
T PLN02188 157 SVKFVNMNNTVVRGITSVNSKFF----HIALVECRNFKGSGLKISAPSDSPNTDGIHIER-SSGVYISDSRIGTGDDCIS 231 (404)
T ss_pred EEEEEeeeeEEEeCeEEEcCCCe----EEEEEccccEEEEEEEEeCCCCCCCCCcEeeeC-cccEEEEeeEEeCCCcEEE
Confidence 46889999999999999997654 3899999999999999997 458999998 999999999999876 799
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCC-CCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCc
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGR-TSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASG 155 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g-~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~ 155 (226)
+++. .+||+|+|+.+.. .+|+.|+|... +..+.|+||+|+|+++.+..++++|+++.+. .+.
T Consensus 232 iksg--------~~nI~I~n~~c~~-ghGisiGSlG~~~~~~~V~nV~v~n~~~~~t~~GiriKt~~g~--------~~~ 294 (404)
T PLN02188 232 IGQG--------NSQVTITRIRCGP-GHGISVGSLGRYPNEGDVTGLVVRDCTFTGTTNGIRIKTWANS--------PGK 294 (404)
T ss_pred EccC--------CccEEEEEEEEcC-CCcEEeCCCCCCCcCCcEEEEEEEeeEEECCCcEEEEEEecCC--------CCc
Confidence 9873 3799999999954 58999998532 1246799999999999999999999984221 235
Q ss_pred eEEEeEEEEeEEEeccCceeEEEec---c-----C----CCCeecEEEEeEEEEeCC
Q 027251 156 VKISDVIYQDIHGTSATEVGVKLDC---S-----S----KNPCTGISLEDVKLIYKN 200 (226)
Q Consensus 156 ~~i~nI~~~ni~~~~~~~~~~~i~~---~-----~----~~~~~ni~f~nv~i~~~~ 200 (226)
+.++||+|+||++.... .|+.|.. . + ...++||+|+||+.+...
T Consensus 295 G~v~nI~f~ni~m~~v~-~pI~i~~~Y~~~~~~~~~~~s~v~I~nIt~~nI~gt~~~ 350 (404)
T PLN02188 295 SAATNMTFENIVMNNVT-NPIIIDQKYCPFYSCESKYPSGVTLSDIYFKNIRGTSSS 350 (404)
T ss_pred eEEEEEEEEeEEecCcc-ceEEEEccccCCCCCCcCCCCCcEEEeEEEEEEEEEecC
Confidence 78999999999998875 4888752 1 1 134899999999998764
No 14
>PLN03010 polygalacturonase
Probab=99.91 E-value=2.8e-22 Score=179.85 Aligned_cols=181 Identities=15% Similarity=0.246 Sum_probs=147.1
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec-----CCCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-----GDDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~-----~DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
.+.+.+|+|++|+++++.+++.+ -+.+..|+||+|+++.|.+ .-|+|.+.+ |+||+|+||++.++| +|+
T Consensus 159 ~l~~~~~~nv~v~gitl~nsp~~----~i~i~~~~nv~i~~i~I~a~~~s~NTDGiDi~~-s~nV~I~n~~I~~gDDcIa 233 (409)
T PLN03010 159 ALHISKCDNLTINGITSIDSPKN----HISIKTCNYVAISKINILAPETSPNTDGIDISY-STNINIFDSTIQTGDDCIA 233 (409)
T ss_pred eEEEEeecCeEEeeeEEEcCCce----EEEEeccccEEEEEEEEeCCCCCCCCCceeeec-cceEEEEeeEEecCCCeEE
Confidence 58899999999999999997654 3889999999999999997 458999998 999999999999876 799
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCc
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASG 155 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~ 155 (226)
|++. -+++.|+++.+.. .+||.|+|.... ....|+||+|+|+++.+..++++|+++.+ +.
T Consensus 234 iksg--------s~ni~I~~~~C~~-gHGisIGS~g~~~~~~~V~nV~v~n~~i~~t~~GirIKt~~G----------~~ 294 (409)
T PLN03010 234 INSG--------SSNINITQINCGP-GHGISVGSLGADGANAKVSDVHVTHCTFNQTTNGARIKTWQG----------GQ 294 (409)
T ss_pred ecCC--------CCcEEEEEEEeEC-cCCEEEccCCCCCCCCeeEEEEEEeeEEeCCCcceEEEEecC----------CC
Confidence 9883 2567888888864 579999998431 12469999999999999999999999532 35
Q ss_pred eEEEeEEEEeEEEeccCceeEEEec---cC---------CCCeecEEEEeEEEEeCC-CCcceeee
Q 027251 156 VKISDVIYQDIHGTSATEVGVKLDC---SS---------KNPCTGISLEDVKLIYKN-QPAEASCT 208 (226)
Q Consensus 156 ~~i~nI~~~ni~~~~~~~~~~~i~~---~~---------~~~~~ni~f~nv~i~~~~-~~~~~~C~ 208 (226)
+.++||+|+||++.... .|+.|.- .. ..+++||+|+||+.+... .+..+.|+
T Consensus 295 G~v~nItf~nI~m~~v~-~pI~I~q~Y~~~~~~~~~~~s~v~Isdi~~~ni~GT~~~~~~i~l~Cs 359 (409)
T PLN03010 295 GYARNISFENITLINTK-NPIIIDQQYIDKGKLDATKDSAVAISNVKYVGFRGTTSNENAITLKCS 359 (409)
T ss_pred EEEEEeEEEeEEEecCC-ccEEEEeeccCCCCCCCCCCCceEEEeEEEEeeEEEeCCCccEEEEeC
Confidence 78999999999999874 5888842 21 125899999999998665 34456664
No 15
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 28 GH28 from CAZY comprises enzymes with several known activities; polygalacturonase (3.2.1.15 from EC); exo-polygalacturonase (3.2.1.67 from EC); exo-polygalacturonase (3.2.1.82 from EC); rhamnogalacturonase (EC not defined). Polygalacturonase (PG) (pectinase) [, ] catalyses the random hydrolysis of 1,4-alpha-D-galactosiduronic linkages in pectate and other galacturonans. In fruit, polygalacturonase plays an important role in cell wall metabolism during ripening. In plant bacterial pathogens such as Erwinia carotovora or Ralstonia solanacearum (Pseudomonas solanacearum) and fungal pathogens such as Aspergillus niger, polygalacturonase is involved in maceration and soft-rotting of plant tissue. Exo-poly-alpha-D-galacturonosidase (3.2.1.82 from EC) (exoPG) [] hydrolyses peptic acid from the non-reducing end, releasing digalacturonate. PG and exoPG share a few regions of sequence similarity, and belong to family 28 of the glycosyl hydrolases.; GO: 0004650 polygalacturonase activity, 0005975 carbohydrate metabolic process; PDB: 1KCC_A 1KCD_A 1K5C_A 1HG8_A 2IQ7_A 2UVF_B 1RMG_A 1CZF_B 3JUR_C 1BHE_A ....
Probab=99.90 E-value=9.9e-22 Score=172.85 Aligned_cols=170 Identities=25% Similarity=0.379 Sum_probs=142.2
Q ss_pred EEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecC-----CCeeEecCCceeEEEEeeEEcCCc-eeEE
Q 027251 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTG-----DDCVSVGPGATNLWIENVACGPGH-GISI 77 (226)
Q Consensus 4 i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~-----DD~i~iksgs~nV~I~n~~~~~~~-gi~i 77 (226)
+.+..|+|++|+++++.+++.+ .+.+..|+||+|+++.|.+. .|+|.+.+ |+||+|+||++..+| +|+|
T Consensus 95 i~~~~~~~~~i~~i~~~nsp~w----~~~~~~~~nv~i~~i~I~~~~~~~NtDGid~~~-s~nv~I~n~~i~~gDD~Iai 169 (326)
T PF00295_consen 95 IRFNNCKNVTIEGITIRNSPFW----HIHINDCDNVTISNITINNPANSPNTDGIDIDS-SKNVTIENCFIDNGDDCIAI 169 (326)
T ss_dssp EEEEEEEEEEEESEEEES-SSE----SEEEESEEEEEEESEEEEEGGGCTS--SEEEES-EEEEEEESEEEESSSESEEE
T ss_pred eeeeeecceEEEeeEecCCCee----EEEEEccCCeEEcceEEEecCCCCCcceEEEEe-eeEEEEEEeecccccCcccc
Confidence 7889999999999999997643 38899999999999999863 58999998 999999999999876 6999
Q ss_pred eeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCc---eEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCC
Q 027251 78 GSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGG---FARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQAS 154 (226)
Q Consensus 78 GS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g---~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~ 154 (226)
++. -.||+++||++.. .+|+.|++... ++ .|+||+|+|+++.+..++++|++.. .+
T Consensus 170 ks~--------~~ni~v~n~~~~~-ghGisiGS~~~--~~~~~~i~nV~~~n~~i~~t~~gi~iKt~~----------~~ 228 (326)
T PF00295_consen 170 KSG--------SGNILVENCTCSG-GHGISIGSEGS--GGSQNDIRNVTFENCTIINTDNGIRIKTWP----------GG 228 (326)
T ss_dssp SSE--------ECEEEEESEEEES-SSEEEEEEESS--SSE--EEEEEEEEEEEEESESEEEEEEEET----------TT
T ss_pred ccc--------ccceEEEeEEEec-cccceeeeccC--CccccEEEeEEEEEEEeeccceEEEEEEec----------cc
Confidence 885 1299999999975 57899999853 33 6999999999999999999999842 14
Q ss_pred ceEEEeEEEEeEEEeccCceeEEEec---c------C--CCCeecEEEEeEEEEeCC
Q 027251 155 GVKISDVIYQDIHGTSATEVGVKLDC---S------S--KNPCTGISLEDVKLIYKN 200 (226)
Q Consensus 155 ~~~i~nI~~~ni~~~~~~~~~~~i~~---~------~--~~~~~ni~f~nv~i~~~~ 200 (226)
.+.++||+|+||+++... .|+.|.- . + ..+++||+|+||+.+..+
T Consensus 229 ~G~v~nI~f~ni~~~~v~-~pi~i~~~y~~~~~~~~~~~~~~i~nI~~~nitg~~~~ 284 (326)
T PF00295_consen 229 GGYVSNITFENITMENVK-YPIFIDQDYRDGGPCGKPPSGVSISNITFRNITGTSAG 284 (326)
T ss_dssp SEEEEEEEEEEEEEEEES-EEEEEEEEECTTEESSCSSSSSEEEEEEEEEEEEEEST
T ss_pred ceEEeceEEEEEEecCCc-eEEEEEeccccccccCcccCCceEEEEEEEeeEEEecc
Confidence 689999999999999876 6888852 1 1 135999999999999876
No 16
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=3.2e-16 Score=144.06 Aligned_cols=151 Identities=21% Similarity=0.330 Sum_probs=128.9
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCC----eeEecCCceeEEEEeeEEcCCc-eeEE
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDD----CVSVGPGATNLWIENVACGPGH-GISI 77 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD----~i~iksgs~nV~I~n~~~~~~~-gi~i 77 (226)
++.+..|+||++++++|.+++. .++++..|+|++++|..|.+.++ ++.+.+ |+||+|++|+|..++ .+++
T Consensus 240 ~~~l~~c~NV~~~g~~i~ns~~----~~~h~~~~~nl~~~nl~I~~~~~~NtDG~d~~s-c~NvlI~~~~fdtgDD~I~i 314 (542)
T COG5434 240 TVVLKGCRNVLLEGLNIKNSPL----WTVHPVDCDNLTFRNLTIDANRFDNTDGFDPGS-CSNVLIEGCRFDTGDDCIAI 314 (542)
T ss_pred eEEEeccceEEEeeeEecCCCc----EEEeeecccCceecceEEECCCCCCCCcccccc-ceeEEEeccEEecCCceEEe
Confidence 6789999999999999999865 37999999999999999998654 999998 999999999999876 6999
Q ss_pred eeecccc---CcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCC
Q 027251 78 GSLGKEQ---QEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQAS 154 (226)
Q Consensus 78 GS~g~~~---~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~ 154 (226)
+|..... -.+..+||.|+||.|.....++.++++. +|.|+||++||+.|.+...+++|+.... .
T Consensus 315 ksg~~~~~~~~~~~~~~i~i~~c~~~~ghG~~v~Gse~---~ggv~ni~ved~~~~~~d~GLRikt~~~----------~ 381 (542)
T COG5434 315 KSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLVLGSEM---GGGVQNITVEDCVMDNTDRGLRIKTNDG----------R 381 (542)
T ss_pred ecccCCcccccccccccEEEecceecccccceEeeeec---CCceeEEEEEeeeeccCcceeeeeeecc----------c
Confidence 8842211 1244799999999999888889998995 5889999999999999999999998532 3
Q ss_pred ceEEEeEEEEeEEEecc
Q 027251 155 GVKISDVIYQDIHGTSA 171 (226)
Q Consensus 155 ~~~i~nI~~~ni~~~~~ 171 (226)
++.++||+|+++.....
T Consensus 382 gG~v~nI~~~~~~~~nv 398 (542)
T COG5434 382 GGGVRNIVFEDNKMRNV 398 (542)
T ss_pred ceeEEEEEEecccccCc
Confidence 48899999999887765
No 17
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=99.32 E-value=2.5e-10 Score=103.90 Aligned_cols=180 Identities=19% Similarity=0.201 Sum_probs=96.7
Q ss_pred CcEEEEEcee----cEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCc-e-
Q 027251 1 MFHIVINGCN----DVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGH-G- 74 (226)
Q Consensus 1 ~w~i~~~~~~----nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~-g- 74 (226)
||++.+..-+ +..|+|.++... |..|+|||.+. ++-+|+|||+++.||+|.+.. +++.|+||++|..+ |
T Consensus 343 ~~Sm~l~g~~~~~~~~~i~nyKqVGa-W~~qtDGi~ly--~nS~i~dcF~h~nDD~iKlYh--S~v~v~~~ViWk~~Ngp 417 (582)
T PF03718_consen 343 FHSMDLYGNENDKFSMNISNYKQVGA-WYFQTDGIELY--PNSTIRDCFIHVNDDAIKLYH--SNVSVSNTVIWKNENGP 417 (582)
T ss_dssp S-SEEEESSSGGGEEEEEEEEEEE----CTT----B----TT-EEEEEEEEESS-SEE--S--TTEEEEEEEEEE-SSS-
T ss_pred cceEEecCCccccccceeeceeeeee-EEeccCCcccc--CCCeeeeeEEEecCchhheee--cCcceeeeEEEecCCCC
Confidence 4666666433 467777777764 46799999998 477889999999999997775 59999999999754 3
Q ss_pred -eEEeeeccccCcCCEEEEEEEeeEEEccC---------ceEEEEEeC----CC-----CCceEEeEEEEeEEEeCCCc-
Q 027251 75 -ISIGSLGKEQQEAGVQNVTVTSVTFTGTQ---------NGVRIKSWG----RT-----SGGFARNILFQHALMNNVDN- 134 (226)
Q Consensus 75 -i~iGS~g~~~~~~~v~nI~~~n~~~~~~~---------~gi~iks~~----g~-----~~g~v~nI~f~ni~~~~~~~- 134 (226)
+.+|.. ...++||+|+|+.++.+. .+|.--+.. +. ..-.||+.+|+|+++|..-.
T Consensus 418 iiq~GW~-----pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y~~~~s~~~adp~~ti~~~~~~nv~~EG~~~~ 492 (582)
T PF03718_consen 418 IIQWGWT-----PRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFYDDMASTKTADPSTTIRNMTFSNVRCEGMCPC 492 (582)
T ss_dssp SEE--CS--------EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BTTS-SSS--BEEEEEEEEEEEEEEEEECCE-E
T ss_pred eEEeecc-----ccccCceEEeeeEEEeeeeecccCCCCceeEecccccccccCCCCCCcccceeeEEEEeEEEecccce
Confidence 777764 456999999999999862 344332211 10 12378999999999999753
Q ss_pred cEEEEeeeCCCCCCCCCCCCceEEEeEEEEeEEEeccCceeEEEec---c---CCCCeecEEEEeEEEEeC
Q 027251 135 PIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDC---S---SKNPCTGISLEDVKLIYK 199 (226)
Q Consensus 135 ~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~---~---~~~~~~ni~f~nv~i~~~ 199 (226)
.++|.-- . ......|+|+.|+.+.+.........+.. . ......+|.|+|+++..+
T Consensus 493 l~ri~pl--q-------n~~nl~ikN~~~~~w~~~~~~~~~s~~k~~~~~~~~~~~~~~gi~i~N~tVgg~ 554 (582)
T PF03718_consen 493 LFRIYPL--Q-------NYDNLVIKNVHFESWNGLDITSQVSGLKAYYNMANNKQNDTMGIIIENWTVGGE 554 (582)
T ss_dssp CEEE--S--E-------EEEEEEEEEEEECEET-CGCSTT-EEE---CCTTT--B--EEEEEEEEEEETTE
T ss_pred eEEEeec--C-------CCcceEEEEeecccccCcccccceeeccccccccccccccccceEEEeEEECCE
Confidence 3444320 0 01124455555554433211111222221 1 123478899999988543
No 18
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of dextranase (3.2.1.11 from EC) and isopullulanase (3.2.1.57 from EC) which are all members of glycoside hydrolase family 49 (GH49 from CAZY). Dextranase hydrolyses alpha-1,6-glycosidic bonds in dextran polymers.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1X0C_A 1WMR_A 2Z8G_B 1OGM_X 1OGO_X.
Probab=98.78 E-value=1.5e-07 Score=86.01 Aligned_cols=174 Identities=13% Similarity=0.163 Sum_probs=102.7
Q ss_pred cEEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCc----cEEEEeeEEec----CCCeeEecCCceeEEEEeeEEcCC-
Q 027251 2 FHIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSS----GVTILDSKIGT----GDDCVSVGPGATNLWIENVACGPG- 72 (226)
Q Consensus 2 w~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~----nV~I~n~~i~~----~DD~i~iksgs~nV~I~n~~~~~~- 72 (226)
|++....+.++.+++++|..|+. + .+++..-+ +..|+|.++.- +-|++.+.. |=+|+||.++..
T Consensus 321 ~~~~~~g~q~~~~~GiTI~~pP~--~--Sm~l~g~~~~~~~~~i~nyKqVGaW~~qtDGi~ly~---nS~i~dcF~h~nD 393 (582)
T PF03718_consen 321 WHISANGGQTLTCEGITINDPPF--H--SMDLYGNENDKFSMNISNYKQVGAWYFQTDGIELYP---NSTIRDCFIHVND 393 (582)
T ss_dssp EECS-SSSEEEEEES-EEE--SS-----SEEEESSSGGGEEEEEEEEEEE---CTT----B--T---T-EEEEEEEEESS
T ss_pred hhhccCCcceEEEEeeEecCCCc--c--eEEecCCccccccceeeceeeeeeEEeccCCccccC---CCeeeeeEEEecC
Confidence 56677789999999999999764 2 37877433 47899998885 578999987 447799999865
Q ss_pred ceeEEeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCC---------ccEEE-Eeee
Q 027251 73 HGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVD---------NPIII-DQNY 142 (226)
Q Consensus 73 ~gi~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~---------~~i~i-~~~y 142 (226)
++|.+ .-+++.++||+++.-.+|--|..-+ ....++||.|+|+.+-..+ .+|.- ...|
T Consensus 394 D~iKl----------YhS~v~v~~~ViWk~~Ngpiiq~GW--~pr~isnv~veni~IIh~r~~~~~~~~n~~I~~ss~~y 461 (582)
T PF03718_consen 394 DAIKL----------YHSNVSVSNTVIWKNENGPIIQWGW--TPRNISNVSVENIDIIHNRWIWHNNYVNTAILGSSPFY 461 (582)
T ss_dssp -SEE------------STTEEEEEEEEEE-SSS-SEE--C--S---EEEEEEEEEEEEE---SSGGCTTT-ECEEE--BT
T ss_pred chhhe----------eecCcceeeeEEEecCCCCeEEeec--cccccCceEEeeeEEEeeeeecccCCCCceeEeccccc
Confidence 46876 1278899999999876665554332 3567999999999997663 12332 2245
Q ss_pred CCCCCCCCCCCCceEEEeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEE
Q 027251 143 CPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 143 ~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
.+.... +......+|++++|+|++.++.....+.|. |-...+|+.++|+.+.
T Consensus 462 ~~~~s~-~~adp~~ti~~~~~~nv~~EG~~~~l~ri~--plqn~~nl~ikN~~~~ 513 (582)
T PF03718_consen 462 DDMAST-KTADPSTTIRNMTFSNVRCEGMCPCLFRIY--PLQNYDNLVIKNVHFE 513 (582)
T ss_dssp TS-SSS---BEEEEEEEEEEEEEEEEECCE-ECEEE----SEEEEEEEEEEEEEC
T ss_pred ccccCC-CCCCcccceeeEEEEeEEEecccceeEEEe--ecCCCcceEEEEeecc
Confidence 221111 112234689999999999988754445553 3345667778888875
No 19
>smart00656 Amb_all Amb_all domain.
Probab=98.63 E-value=2.8e-06 Score=69.38 Aligned_cols=99 Identities=18% Similarity=0.258 Sum_probs=73.8
Q ss_pred EEEEEceecEEEEeEEEEcCCC--CCCCCeEEecCCccEEEEeeEEecC----------CCeeEecCCceeEEEEeeEEc
Q 027251 3 HIVINGCNDVKVQGVKVSAAGE--SPNTDGIHVQSSSGVTILDSKIGTG----------DDCVSVGPGATNLWIENVACG 70 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~--~~ntDGidi~~~~nV~I~n~~i~~~----------DD~i~iksgs~nV~I~n~~~~ 70 (226)
.|.+..++||.|+||+|+.+.. ..+.|+|.+..+++|.|++|.+..+ |..+.++.++.+|+|++|.|.
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~~~~VwIDHct~s~~~~~~~~~~~~D~~~di~~~s~~vTvs~~~f~ 112 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDGSSNVWIDHVSLSGCTVTGFGDDTYDGLIDIKNGSTYVTISNNYFH 112 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeCCCeEEEEccEeEcceeccCCCCCCCccEEECcccccEEEECceEe
Confidence 4667678899999999998532 2467899999899999999999986 566788888899999999997
Q ss_pred CCc-eeEEeeeccccCcCCEEEEEEEeeEEEcc
Q 027251 71 PGH-GISIGSLGKEQQEAGVQNVTVTSVTFTGT 102 (226)
Q Consensus 71 ~~~-gi~iGS~g~~~~~~~v~nI~~~n~~~~~~ 102 (226)
..+ +.-+|+.-.. ......+|++.++.+.+.
T Consensus 113 ~h~~~~liG~~d~~-~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 113 NHWKVMLLGHSDSD-TDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred cCCEEEEEccCCCc-cccccceEEEECcEEcCc
Confidence 544 6777764211 112245788888888653
No 20
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.52 E-value=2.3e-06 Score=75.10 Aligned_cols=88 Identities=24% Similarity=0.380 Sum_probs=50.5
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEe--------cCCCeeEecCCceeEEEEeeEEcCC--ceeEE
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIG--------TGDDCVSVGPGATNLWIENVACGPG--HGISI 77 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~--------~~DD~i~iksgs~nV~I~n~~~~~~--~gi~i 77 (226)
.+++|+|++++|.+.. .+||.+..|++++|+++.+. ++.++|.+.. |++++|++|.+.+. .||.+
T Consensus 61 ~a~~VtI~~ltI~~~~----~~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~-s~~v~I~~n~i~g~~d~GIyv 135 (314)
T TIGR03805 61 TSDDVTLSDLAVENTK----GDGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVE-STNVLVEDSYVRGASDAGIYV 135 (314)
T ss_pred EeCCeEEEeeEEEcCC----CCeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEec-cCCEEEECCEEECCCcccEEE
Confidence 4666666776666532 24666666666666666664 3445666654 66666666666543 24554
Q ss_pred eeeccccCcCCEEEEEEEeeEEEccCceEEEE
Q 027251 78 GSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIK 109 (226)
Q Consensus 78 GS~g~~~~~~~v~nI~~~n~~~~~~~~gi~ik 109 (226)
+. .+++.|+|+++.+...||.+-
T Consensus 136 ~~---------s~~~~v~nN~~~~n~~GI~i~ 158 (314)
T TIGR03805 136 GQ---------SQNIVVRNNVAEENVAGIEIE 158 (314)
T ss_pred CC---------CCCeEEECCEEccCcceEEEE
Confidence 32 245666666666555555554
No 21
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein. Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.
Probab=98.52 E-value=2.8e-06 Score=74.56 Aligned_cols=121 Identities=20% Similarity=0.236 Sum_probs=90.6
Q ss_pred cEEEEEceecEEEEeEEEEcCCC---CCCCCeEEecCCccEEEEeeEEecC-CCeeEecCCceeEEEEeeEEcCCc-eeE
Q 027251 2 FHIVINGCNDVKVQGVKVSAAGE---SPNTDGIHVQSSSGVTILDSKIGTG-DDCVSVGPGATNLWIENVACGPGH-GIS 76 (226)
Q Consensus 2 w~i~~~~~~nV~I~~i~i~~~~~---~~ntDGidi~~~~nV~I~n~~i~~~-DD~i~iksgs~nV~I~n~~~~~~~-gi~ 76 (226)
+.+.+..|++++|+++++.-... ....+||.+..|++++|++++++.. |++|.++. ++|++|+|++++..+ ||-
T Consensus 78 ~GI~v~~s~~i~I~n~~i~~~~~~~~~~~~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~-s~~~~v~nN~~~~n~~GI~ 156 (314)
T TIGR03805 78 DGVKVKGSDGIIIRRLRVEWTGGPKSSNGAYGIYPVESTNVLVEDSYVRGASDAGIYVGQ-SQNIVVRNNVAEENVAGIE 156 (314)
T ss_pred CeEEEeCCCCEEEEeeEEEeccCccccCCcceEEEeccCCEEEECCEEECCCcccEEECC-CCCeEEECCEEccCcceEE
Confidence 45778899999999999973211 1245799999999999999999985 45899987 899999999998754 787
Q ss_pred EeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 77 IGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 77 iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
+-. ..++.+++..+.+...|+.+-..++...-.-+++++++-.+.+.
T Consensus 157 i~~---------S~~~~v~~N~~~~N~~Gi~v~~~p~~~~~~s~~~~v~~N~i~~n 203 (314)
T TIGR03805 157 IEN---------SQNADVYNNIATNNTGGILVFDLPGLPQPGGSNVRVFDNIIFDN 203 (314)
T ss_pred EEe---------cCCcEEECCEEeccceeEEEeecCCCCcCCccceEEECCEEECC
Confidence 732 25678888888877779988766542112335666666666543
No 22
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.40 E-value=4.3e-06 Score=64.59 Aligned_cols=116 Identities=26% Similarity=0.420 Sum_probs=82.5
Q ss_pred EEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCc-eeEEeeecc
Q 027251 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGH-GISIGSLGK 82 (226)
Q Consensus 4 i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~-gi~iGS~g~ 82 (226)
|.+..+.+++|++++|... ..+|+.+..+..++|++|.|..+..++.+.. ..++++++|++.... |+.+-
T Consensus 3 i~i~~~~~~~i~~~~i~~~----~~~gi~~~~~~~~~i~n~~i~~~~~gi~~~~-~~~~~i~~~~~~~~~~~i~~~---- 73 (158)
T PF13229_consen 3 ISINNGSNVTIRNCTISNN----GGDGIHVSGSSNITIENCTISNGGYGIYVSG-GSNVTISNNTISDNGSGIYVS---- 73 (158)
T ss_dssp EEETTCEC-EEESEEEESS----SSECEEE-SSCESEEES-EEESSTTSEEEEC-CES-EEES-EEES-SEEEECC----
T ss_pred EEEECCcCeEEeeeEEEeC----CCeEEEEEcCCCeEEECeEEECCCcEEEEec-CCCeEEECeEEEEccceEEEE----
Confidence 5778889999999999985 3478999999999999999999888998887 689999999998765 44442
Q ss_pred ccCcCCEEEEEEEeeEEEccCc-eEEEEEeCCCCCceEEeEEEEeEEEeCCC-ccEEEEe
Q 027251 83 EQQEAGVQNVTVTSVTFTGTQN-GVRIKSWGRTSGGFARNILFQHALMNNVD-NPIIIDQ 140 (226)
Q Consensus 83 ~~~~~~v~nI~~~n~~~~~~~~-gi~iks~~g~~~g~v~nI~f~ni~~~~~~-~~i~i~~ 140 (226)
...++++++|.+.+... ||.++. .-+++++++.++.+.. .++.+..
T Consensus 74 -----~~~~~~i~~~~i~~~~~~gi~~~~-------~~~~~~i~~n~~~~~~~~gi~~~~ 121 (158)
T PF13229_consen 74 -----GSSNITIENNRIENNGDYGIYISN-------SSSNVTIENNTIHNNGGSGIYLEG 121 (158)
T ss_dssp -----S-CS-EEES-EEECSSS-SCE-TC-------EECS-EEES-EEECCTTSSCEEEE
T ss_pred -----ecCCceecCcEEEcCCCccEEEec-------cCCCEEEEeEEEEeCcceeEEEEC
Confidence 35778999999998765 887753 2345788999998876 5676664
No 23
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=98.36 E-value=2.8e-06 Score=69.95 Aligned_cols=100 Identities=25% Similarity=0.350 Sum_probs=67.9
Q ss_pred cEEEEE-ceecEEEEeEEEEcC-----------CCCCCCCeEEecCCccEEEEeeEEecC---------CCeeEecCCce
Q 027251 2 FHIVIN-GCNDVKVQGVKVSAA-----------GESPNTDGIHVQSSSGVTILDSKIGTG---------DDCVSVGPGAT 60 (226)
Q Consensus 2 w~i~~~-~~~nV~I~~i~i~~~-----------~~~~ntDGidi~~~~nV~I~n~~i~~~---------DD~i~iksgs~ 60 (226)
+.+.+. .++||.|+|++|... .+....|+|.+..++||.|++|.+..+ |..+.++.+++
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~~s~ 116 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDNSSNVWIDHCSFSWGNFECNSDSSDGLIDIKKGSD 116 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEESTEEEEEES-EEEETTS-GGGSSSSSSEEEESSTE
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEecccEEEeccEEeccccccccccCCceEEEEeCCc
Confidence 345555 889999999999871 123567889999999999999999866 55688888889
Q ss_pred eEEEEeeEEcCCc-eeEEeeeccccCcCCEEEEEEEeeEEEcc
Q 027251 61 NLWIENVACGPGH-GISIGSLGKEQQEAGVQNVTVTSVTFTGT 102 (226)
Q Consensus 61 nV~I~n~~~~~~~-gi~iGS~g~~~~~~~v~nI~~~n~~~~~~ 102 (226)
+|+|++|.|...+ +.-+|+......... .+|++.++.+.+.
T Consensus 117 ~vTiS~n~f~~~~k~~l~G~~d~~~~~~~-~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 117 NVTISNNIFDNHNKTMLIGSSDSNSTDRG-LRVTFHHNYFANT 158 (200)
T ss_dssp EEEEES-EEEEEEETCEESSCTTCGGGTT-EEEEEES-EEEEE
T ss_pred eEEEEchhccccccccccCCCCCccccCC-ceEEEEeEEECch
Confidence 9999999997643 566776422222334 8888888888653
No 24
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.32 E-value=5.2e-06 Score=69.96 Aligned_cols=34 Identities=15% Similarity=0.466 Sum_probs=17.4
Q ss_pred EEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEE
Q 027251 6 INGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKI 46 (226)
Q Consensus 6 ~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i 46 (226)
|..|++++++|+++.+++- -++.|++|.++|+.+
T Consensus 94 fR~~~~i~L~nv~~~~A~E-------t~W~c~~i~l~nv~~ 127 (277)
T PF12541_consen 94 FRECSNITLENVDIPDADE-------TLWNCRGIKLKNVQA 127 (277)
T ss_pred hhcccCcEEEeeEeCCCcc-------cCEEeCCeEEEeEEE
Confidence 3456666666666643321 233455555555555
No 25
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 281 and 297 amino acids in length.
Probab=98.27 E-value=3.9e-06 Score=70.66 Aligned_cols=105 Identities=20% Similarity=0.284 Sum_probs=73.8
Q ss_pred EEceecEEEEeEEEEcCCCCC-----CCCeE------EecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCce
Q 027251 6 INGCNDVKVQGVKVSAAGESP-----NTDGI------HVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHG 74 (226)
Q Consensus 6 ~~~~~nV~I~~i~i~~~~~~~-----ntDGi------di~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~g 74 (226)
+..|++|+++|+++......- --||+ -+.+|+||.|+|+.+.+.| |+-. ++||+|.|+.+.+-
T Consensus 114 ~W~c~~i~l~nv~~~gdYf~m~s~ni~id~l~~~GnY~Fq~~kNvei~ns~l~sKD---AFWn-~eNVtVyDS~i~GE-- 187 (277)
T PF12541_consen 114 LWNCRGIKLKNVQANGDYFFMNSENIYIDNLVLDGNYSFQYCKNVEIHNSKLDSKD---AFWN-CENVTVYDSVINGE-- 187 (277)
T ss_pred CEEeCCeEEEeEEEeceEeeeeccceEEeceEEeCCEEeeceeeEEEEccEEeccc---cccc-CCceEEEcceEeee--
Confidence 567888888888885432111 11233 3457999999999999886 3444 89999999998732
Q ss_pred eEEeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccE
Q 027251 75 ISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPI 136 (226)
Q Consensus 75 i~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i 136 (226)
-+|- ..+||++-||++.+.+ .=-+++|++.+|++|.+..-++
T Consensus 188 -YLgW--------~SkNltliNC~I~g~Q-----------pLCY~~~L~l~nC~~~~tdlaF 229 (277)
T PF12541_consen 188 -YLGW--------NSKNLTLINCTIEGTQ-----------PLCYCDNLVLENCTMIDTDLAF 229 (277)
T ss_pred -EEEE--------EcCCeEEEEeEEeccC-----------ccEeecceEEeCcEeecceeee
Confidence 2222 2589999999997753 1357889999999999776443
No 26
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=98.22 E-value=3.6e-05 Score=66.17 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=18.7
Q ss_pred eEEecCCccEEEEeeEEecC------CCeeEecCCceeEEEEeeEEc
Q 027251 30 GIHVQSSSGVTILDSKIGTG------DDCVSVGPGATNLWIENVACG 70 (226)
Q Consensus 30 Gidi~~~~nV~I~n~~i~~~------DD~i~iksgs~nV~I~n~~~~ 70 (226)
|+-+...+||.|+|+.|.-- +|+|.|..+++||.|.+|+|.
T Consensus 118 gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~ 164 (345)
T COG3866 118 GLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFS 164 (345)
T ss_pred eEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEec
Confidence 34444444555555544431 244555333445555555544
No 27
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A.
Probab=98.08 E-value=4.7e-05 Score=58.65 Aligned_cols=93 Identities=30% Similarity=0.459 Sum_probs=63.2
Q ss_pred CeEEecCCccEEEEeeEEec-CCCeeEecCCceeEEEEeeEEcC-CceeEEeeeccccCcCCEEEEEEEeeEEEccCceE
Q 027251 29 DGIHVQSSSGVTILDSKIGT-GDDCVSVGPGATNLWIENVACGP-GHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGV 106 (226)
Q Consensus 29 DGidi~~~~nV~I~n~~i~~-~DD~i~iksgs~nV~I~n~~~~~-~~gi~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi 106 (226)
|||.+....+++|++|.|.. +.++|.+.. +..++|+||++.. ..|+.+... .++.++++++.+...|+
T Consensus 1 ~Gi~i~~~~~~~i~~~~i~~~~~~gi~~~~-~~~~~i~n~~i~~~~~gi~~~~~---------~~~~i~~~~~~~~~~~i 70 (158)
T PF13229_consen 1 DGISINNGSNVTIRNCTISNNGGDGIHVSG-SSNITIENCTISNGGYGIYVSGG---------SNVTISNNTISDNGSGI 70 (158)
T ss_dssp -CEEETTCEC-EEESEEEESSSSECEEE-S-SCESEEES-EEESSTTSEEEECC---------ES-EEES-EEES-SEEE
T ss_pred CEEEEECCcCeEEeeeEEEeCCCeEEEEEc-CCCeEEECeEEECCCcEEEEecC---------CCeEEECeEEEEccceE
Confidence 68999999999999999998 688999997 6679999999987 457887431 78899999998876555
Q ss_pred EEEEeCCCCCceEEeEEEEeEEEeCCCc-cEEEE
Q 027251 107 RIKSWGRTSGGFARNILFQHALMNNVDN-PIIID 139 (226)
Q Consensus 107 ~iks~~g~~~g~v~nI~f~ni~~~~~~~-~i~i~ 139 (226)
.+. .-.+++++++++++... +|.+.
T Consensus 71 ~~~--------~~~~~~i~~~~i~~~~~~gi~~~ 96 (158)
T PF13229_consen 71 YVS--------GSSNITIENNRIENNGDYGIYIS 96 (158)
T ss_dssp ECC--------S-CS-EEES-EEECSSS-SCE-T
T ss_pred EEE--------ecCCceecCcEEEcCCCccEEEe
Confidence 543 13456777777777654 55544
No 28
>smart00656 Amb_all Amb_all domain.
Probab=97.83 E-value=0.00061 Score=55.60 Aligned_cols=94 Identities=22% Similarity=0.367 Sum_probs=70.7
Q ss_pred eEEecCCccEEEEeeEEecC-------CCeeEecCCceeEEEEeeEEcCC----------ce-eEEeeeccccCcCCEEE
Q 027251 30 GIHVQSSSGVTILDSKIGTG-------DDCVSVGPGATNLWIENVACGPG----------HG-ISIGSLGKEQQEAGVQN 91 (226)
Q Consensus 30 Gidi~~~~nV~I~n~~i~~~-------DD~i~iksgs~nV~I~n~~~~~~----------~g-i~iGS~g~~~~~~~v~n 91 (226)
|+.+..++||.|+|+.|+.. .|+|.+.. ++||.|..|++..+ ++ +.+ .....+
T Consensus 33 gl~i~~~~NVIirnl~i~~~~~~~~~~~D~i~~~~-~~~VwIDHct~s~~~~~~~~~~~~D~~~di--------~~~s~~ 103 (190)
T smart00656 33 GLTIKSVSNVIIRNLTIHDPKPVYGSDGDAISIDG-SSNVWIDHVSLSGCTVTGFGDDTYDGLIDI--------KNGSTY 103 (190)
T ss_pred EEEEEecceEEEeCCEEECCccCCCCCCCEEEEeC-CCeEEEEccEeEcceeccCCCCCCCccEEE--------Cccccc
Confidence 67888889999999999973 47898865 89999999999875 33 333 234689
Q ss_pred EEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 92 VTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 92 I~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
|++++|.|.+...+..+++..........+|||.+....+.
T Consensus 104 vTvs~~~f~~h~~~~liG~~d~~~~~~~~~vT~h~N~~~~~ 144 (190)
T smart00656 104 VTISNNYFHNHWKVMLLGHSDSDTDDGKMRVTIAHNYFGNL 144 (190)
T ss_pred EEEECceEecCCEEEEEccCCCccccccceEEEECcEEcCc
Confidence 99999999988888888754321122355788887777654
No 29
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.78 E-value=0.0012 Score=54.17 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=11.4
Q ss_pred EeEEEEeEEEeC-CCccEEEEe
Q 027251 120 RNILFQHALMNN-VDNPIIIDQ 140 (226)
Q Consensus 120 ~nI~f~ni~~~~-~~~~i~i~~ 140 (226)
++++++|+..++ ...+|.+..
T Consensus 185 ~~~~i~n~~~~~~~~~gi~i~~ 206 (225)
T PF12708_consen 185 NNITISNNTFEGNCGNGINIEG 206 (225)
T ss_dssp EEEEEECEEEESSSSESEEEEE
T ss_pred ceEEEEeEEECCccceeEEEEC
Confidence 455666666555 345555544
No 30
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.78 E-value=0.00068 Score=56.73 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=27.7
Q ss_pred EEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEc
Q 027251 6 INGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACG 70 (226)
Q Consensus 6 ~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~ 70 (226)
+..+.+++|++.++... ..||.+..|++++|+++.+.....+|.+.. +.+.+|+++++.
T Consensus 40 ~~~s~~~~I~~n~i~~~-----~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~-s~~~~I~~N~i~ 98 (236)
T PF05048_consen 40 VENSDNNTISNNTISNN-----RYGIHLMGSSNNTIENNTISNNGYGIYLMG-SSNNTISNNTIS 98 (236)
T ss_pred EEEcCCeEEEeeEEECC-----CeEEEEEccCCCEEEeEEEEccCCCEEEEc-CCCcEEECCEec
Confidence 34444444444444432 234555555555555555554445555554 333355555554
No 31
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O. To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].
Probab=97.75 E-value=0.00066 Score=56.80 Aligned_cols=114 Identities=20% Similarity=0.241 Sum_probs=82.8
Q ss_pred EEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcC-CceeEEeeecc
Q 027251 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGP-GHGISIGSLGK 82 (226)
Q Consensus 4 i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~-~~gi~iGS~g~ 82 (226)
+.+..+++..|++.++... .||+.+..+.+++|+++.+.....+|.+.. +++++|+++++.. ..||.+...
T Consensus 16 i~l~~~~~~~i~~n~i~~~-----~~gi~~~~s~~~~I~~n~i~~~~~GI~~~~-s~~~~i~~n~i~~n~~Gi~l~~s-- 87 (236)
T PF05048_consen 16 IYLWNSSNNSIENNTISNS-----RDGIYVENSDNNTISNNTISNNRYGIHLMG-SSNNTIENNTISNNGYGIYLMGS-- 87 (236)
T ss_pred EEEEeCCCCEEEcCEEEeC-----CCEEEEEEcCCeEEEeeEEECCCeEEEEEc-cCCCEEEeEEEEccCCCEEEEcC--
Confidence 5667778888888887763 378888888999999999998888888887 7789999998876 468888432
Q ss_pred ccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEe
Q 027251 83 EQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQ 140 (226)
Q Consensus 83 ~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~ 140 (226)
.+.+|++.++.+...||.+.... . .++++.++.+...+|++..
T Consensus 88 -------~~~~I~~N~i~~n~~GI~l~~s~---~-----~~I~~N~i~~~~~GI~l~~ 130 (236)
T PF05048_consen 88 -------SNNTISNNTISNNGYGIYLYGSS---N-----NTISNNTISNNGYGIYLSS 130 (236)
T ss_pred -------CCcEEECCEecCCCceEEEeeCC---c-----eEEECcEEeCCCEEEEEEe
Confidence 23488888888776788775331 2 3555555555556666654
No 32
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism]
Probab=97.74 E-value=0.00071 Score=58.34 Aligned_cols=101 Identities=18% Similarity=0.213 Sum_probs=79.5
Q ss_pred cEEEEEceecEEEEeEEEEcCC-CCCCCCeEEe-cCCccEEEEeeEEec---------CCCeeEecCCceeEEEEeeEEc
Q 027251 2 FHIVINGCNDVKVQGVKVSAAG-ESPNTDGIHV-QSSSGVTILDSKIGT---------GDDCVSVGPGATNLWIENVACG 70 (226)
Q Consensus 2 w~i~~~~~~nV~I~~i~i~~~~-~~~ntDGidi-~~~~nV~I~n~~i~~---------~DD~i~iksgs~nV~I~n~~~~ 70 (226)
|-|.+.+..||.|+||+|.-.. +-++-|+|.+ ...+|+.|++|.+.. +|..+.+|-++..|+|+++.|.
T Consensus 117 ~gl~i~~a~NVIirNltf~~~~~~d~~~D~Isi~~~~~nIWIDH~tf~~~s~~~~~~h~DGl~Dik~~AnyITiS~n~fh 196 (345)
T COG3866 117 GGLKIRDAGNVIIRNLTFEGFYQGDPNYDAISIYDDGHNIWIDHNTFSGGSYNASGSHGDGLVDIKKDANYITISYNKFH 196 (345)
T ss_pred ceEEEEeCCcEEEEeeEEEeeccCCCCCCcEEeccCCeEEEEEeeEeccccccccccCCCccEEeccCCcEEEEEeeeee
Confidence 6788888999999999999732 2344589999 789999999999997 4777899988999999999998
Q ss_pred CCc-eeEEeeeccccCcCCEEEEEEEeeEEEcc
Q 027251 71 PGH-GISIGSLGKEQQEAGVQNVTVTSVTFTGT 102 (226)
Q Consensus 71 ~~~-gi~iGS~g~~~~~~~v~nI~~~n~~~~~~ 102 (226)
..+ ++-+|+.-......+-.+|++.++.|.+.
T Consensus 197 dh~Kssl~G~sD~~~~~~~~~kvT~hhNyFkn~ 229 (345)
T COG3866 197 DHDKSSLLGSSDSSNYDDGKYKVTIHHNYFKNL 229 (345)
T ss_pred cCCeeeeeccCCcccccCCceeEEEeccccccc
Confidence 755 67777752211124457799888888774
No 33
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.30 E-value=0.0025 Score=58.02 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=30.0
Q ss_pred EEceecEEEEeEEEEcCCCC--CCCCeEEecCCccEEEEeeEEecCC-CeeEecC
Q 027251 6 INGCNDVKVQGVKVSAAGES--PNTDGIHVQSSSGVTILDSKIGTGD-DCVSVGP 57 (226)
Q Consensus 6 ~~~~~nV~I~~i~i~~~~~~--~ntDGidi~~~~nV~I~n~~i~~~D-D~i~iks 57 (226)
-...++|+|++++|++.... ...-||.+..|++++|++|.|...- -+|.+..
T Consensus 111 ai~A~nVTIsGLtIdGsG~dl~~rdAgI~v~~a~~v~Iedn~L~gsg~FGI~L~~ 165 (455)
T TIGR03808 111 SEGADGIGLSGLTLDGGGIPLPQRRGLIHCQGGRDVRITDCEITGSGGNGIWLET 165 (455)
T ss_pred EecCCCeEEEeeEEEeCCCcccCCCCEEEEccCCceEEEeeEEEcCCcceEEEEc
Confidence 34556777777777663211 1112566666777777777776652 4555554
No 34
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein. Members of this protein family have a Sec-independent twin-arginine tranlocation (TAT) signal sequence, which enables tranfer of proteins folded around prosthetic groups to cross the plasma membrane. These proteins have four copies of a repeat of about 23 amino acids that resembles the beta-helix repeat. Beta-helix refers to a structural motif in which successive beta strands wind around to stack parallel in a right-handed helix, as in AlgG and related enzymes of carbohydrate metabolism. The twin-arginine motif suggests that members of this protein family bind some unknown cofactor.
Probab=97.19 E-value=0.02 Score=52.28 Aligned_cols=71 Identities=20% Similarity=0.233 Sum_probs=50.9
Q ss_pred EEEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCC-c-eeEEe
Q 027251 3 HIVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPG-H-GISIG 78 (226)
Q Consensus 3 ~i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~-~-gi~iG 78 (226)
-|++..|++++|++++|.++.. -||.+..|+...+.|....+.+..|.+.. +++++|++.++... + ||.+-
T Consensus 137 gI~v~~a~~v~Iedn~L~gsg~----FGI~L~~~~~~I~~N~I~g~~~~~I~lw~-S~g~~V~~N~I~g~RD~gi~i~ 209 (455)
T TIGR03808 137 LIHCQGGRDVRITDCEITGSGG----NGIWLETVSGDISGNTITQIAVTAIVSFD-ALGLIVARNTIIGANDNGIEIL 209 (455)
T ss_pred EEEEccCCceEEEeeEEEcCCc----ceEEEEcCcceEecceEeccccceEEEec-cCCCEEECCEEEccCCCCeEEE
Confidence 4667889999999999988531 37888888854444555555677777765 88889988888763 3 56664
No 35
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A ....
Probab=97.13 E-value=0.0098 Score=48.60 Aligned_cols=107 Identities=29% Similarity=0.576 Sum_probs=71.5
Q ss_pred EEEEeEEEEcCCCCC--CCCeEEecCCccEEEEeeEEec-CCCeeEecCC-------------------ceeEEEEeeEE
Q 027251 12 VKVQGVKVSAAGESP--NTDGIHVQSSSGVTILDSKIGT-GDDCVSVGPG-------------------ATNLWIENVAC 69 (226)
Q Consensus 12 V~I~~i~i~~~~~~~--ntDGidi~~~~nV~I~n~~i~~-~DD~i~iksg-------------------s~nV~I~n~~~ 69 (226)
+.|+|++|..+.... ...|+.+..+++++|+||.+.+ +.+++.+... +.++.+.|+.+
T Consensus 94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (225)
T PF12708_consen 94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFNTGTDYRIIGSTHVSGIFIDNGSNNVIVNNCIF 173 (225)
T ss_dssp EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEECCEECEEECCEEEEEEEEESCEEEEEEECEEE
T ss_pred EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEEccccCcEeecccceeeeeccceeEEEECCccc
Confidence 459999999865433 2478999999999999999986 4566665521 12233344444
Q ss_pred cCCc-eeEEeeeccccCcCCEEEEEEEeeEEEc-cCceEEEEEeCCCCCceEEeEEEEeEEEeCCCccE
Q 027251 70 GPGH-GISIGSLGKEQQEAGVQNVTVTSVTFTG-TQNGVRIKSWGRTSGGFARNILFQHALMNNVDNPI 136 (226)
Q Consensus 70 ~~~~-gi~iGS~g~~~~~~~v~nI~~~n~~~~~-~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i 136 (226)
..++ |+..+ -+++.++||.+.. ...||.+.... . ++++|+++++...+|
T Consensus 174 ~~~~~g~~~~----------~~~~~i~n~~~~~~~~~gi~i~~~~----~----~~i~n~~i~~~~~g~ 224 (225)
T PF12708_consen 174 NGGDNGIILG----------NNNITISNNTFEGNCGNGINIEGGS----N----IIISNNTIENCDDGI 224 (225)
T ss_dssp ESSSCSEECE----------EEEEEEECEEEESSSSESEEEEECS----E----EEEEEEEEESSSEEE
T ss_pred cCCCceeEee----------cceEEEEeEEECCccceeEEEECCe----E----EEEEeEEEECCccCc
Confidence 4432 43222 2799999999998 67899886442 1 777777777776655
No 36
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4.2.2.2 from EC is an enzyme involved in the maceration and soft rotting of plant tissue. Pectate lyase is responsible for the eliminative cleavage of pectate, yielding oligosaccharides with 4-deoxy-alpha-D-mann-4-enuronosyl groups at their non-reducing ends. The protein is maximally expressed late in pollen development. It has been suggested that the pollen expression of pectate lyase genes might relate to a requirement for pectin degradation during pollen tube growth []. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail [,]. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 1, Amb a 2, Amb a 3, Cha o 1, Cup a 1, Cry j 1, Jun a 1. Two of the major allergens in the pollen of short ragweed (Ambrosia artemisiifolia) are Amb aI and Amb aII. The primary structure of Amb aII has been deduced and has been shown to share ~65% sequence identity with the Amb alpha I multigene family of allergens []. Members of the Amb aI/aII family include Nicotiana tabacum (Common tobacco) pectate lyase, which is similar to the deduced amino acid sequences of two pollen-specific pectate lyase genes identified in Solanum lycopersicum (Tomato) (Lycopersicon esculentum) []; Cry jI, a major allergenic glycoprotein of Cryptomeria japonica (Japanese cedar) - the most common pollen allergen in Japan []; and P56 and P59, which share sequence similarity with pectate lyases of plant pathogenic bacteria [].; PDB: 1O8M_A 1O8K_A 1O8E_A 1O8H_A 2PEC_A 1PLU_A 1O8I_A 1O8J_A 1O8D_A 1O8F_A ....
Probab=97.06 E-value=0.0021 Score=52.87 Aligned_cols=93 Identities=26% Similarity=0.490 Sum_probs=64.9
Q ss_pred CeEEec-CCccEEEEeeEEec----------------CCCeeEecCCceeEEEEeeEEcCC---------ce-eEEeeec
Q 027251 29 DGIHVQ-SSSGVTILDSKIGT----------------GDDCVSVGPGATNLWIENVACGPG---------HG-ISIGSLG 81 (226)
Q Consensus 29 DGidi~-~~~nV~I~n~~i~~----------------~DD~i~iksgs~nV~I~n~~~~~~---------~g-i~iGS~g 81 (226)
-|+.+. .++||.|+|+.|+. +.|+|.+.. ++||.|..|++..+ +| +.++.
T Consensus 37 ~G~~i~~~~~NVIirNl~~~~~~~~~~~~~~~~~~~~~~Dai~i~~-~~nVWIDH~sfs~~~~~~~~~~~Dg~idi~~-- 113 (200)
T PF00544_consen 37 GGLRIIKGASNVIIRNLRFRNVPVDPGPDWSGDGDSSDGDAISIDN-SSNVWIDHCSFSWGNFECNSDSSDGLIDIKK-- 113 (200)
T ss_dssp SEEEEEESCEEEEEES-EEECEEEECSTEEETTEEECS--SEEEES-TEEEEEES-EEEETTS-GGGSSSSSSEEEES--
T ss_pred ceEEEecCCCeEEEECCEEEeccccCCcccCCCccccCCCeEEEEe-cccEEEeccEEeccccccccccCCceEEEEe--
Confidence 378887 89999999999997 568999995 88999999999755 44 55532
Q ss_pred cccCcCCEEEEEEEeeEEEccCceEEEEEeCCC--CCceEEeEEEEeEEEeCC
Q 027251 82 KEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT--SGGFARNILFQHALMNNV 132 (226)
Q Consensus 82 ~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~--~~g~v~nI~f~ni~~~~~ 132 (226)
...+|++++|.|.+...+..+++.... ..+ .+|||-.....+.
T Consensus 114 ------~s~~vTiS~n~f~~~~k~~l~G~~d~~~~~~~--~~vT~hhN~f~~~ 158 (200)
T PF00544_consen 114 ------GSDNVTISNNIFDNHNKTMLIGSSDSNSTDRG--LRVTFHHNYFANT 158 (200)
T ss_dssp ------STEEEEEES-EEEEEEETCEESSCTTCGGGTT--EEEEEES-EEEEE
T ss_pred ------CCceEEEEchhccccccccccCCCCCccccCC--ceEEEEeEEECch
Confidence 458999999999987666666654221 123 7788877777654
No 37
>PLN02773 pectinesterase
Probab=96.04 E-value=0.34 Score=42.67 Aligned_cols=113 Identities=5% Similarity=0.096 Sum_probs=74.9
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|...........+. ..+.+.+++|.|....|-+-.+. ..-.++||++.+.-.+-+|+
T Consensus 99 v~a~~f~a~nlT~~Nt~~~~~gQAvAl~v~gDr~~f~~c~~~G~QDTL~~~~--gr~yf~~c~IeG~VDFIFG~------ 170 (317)
T PLN02773 99 VEGEDFIAENITFENSAPEGSGQAVAIRVTADRCAFYNCRFLGWQDTLYLHY--GKQYLRDCYIEGSVDFIFGN------ 170 (317)
T ss_pred EECCCeEEEeeEEEeCCCCCCCcEEEEEecCccEEEEccEeecccceeEeCC--CCEEEEeeEEeecccEEeec------
Confidence 4578999999999995322122333332 46899999999999888877764 36888999998766777766
Q ss_pred cCCEEEEEEEeeEEEccCceEEEEEeCCCC-CceEEeEEEEeEEEeCCC
Q 027251 86 EAGVQNVTVTSVTFTGTQNGVRIKSWGRTS-GGFARNILFQHALMNNVD 133 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~gi~iks~~g~~-~g~v~nI~f~ni~~~~~~ 133 (226)
-...|++|.+.....| .|- .++.. ...-....|.|+++....
T Consensus 171 ----g~a~Fe~c~i~s~~~g-~IT-A~~r~~~~~~~GfvF~~c~it~~~ 213 (317)
T PLN02773 171 ----STALLEHCHIHCKSAG-FIT-AQSRKSSQESTGYVFLRCVITGNG 213 (317)
T ss_pred ----cEEEEEeeEEEEccCc-EEE-CCCCCCCCCCceEEEEccEEecCC
Confidence 2358888888765443 232 22211 112234788888888753
No 38
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue. It catalyses the eliminative cleavage of pectate to produce oligosaccharides with 4-deoxy-alpha-D-gluc-4-enuronosyl groups at their non-reducing ends. Pectate lyase is an extracellular enzyme and is induced by pectin. It is subject to self-catabolite repression, and has been implicated in plant disease. The structure and the folding kinetics of one member of this family, pectate lyase C (pelC)1 from Erwinia chrysanthemi has been investigated in some detail []. PelC contains a parallel beta-helix folding motif. The majority of the regular secondary structure is composed of parallel beta-sheets (about 30%). The individual strands of the sheets are connected by unordered loops of varying length. The backbone is then formed by a large helix composed of beta-sheets. There are two disulphide bonds in pelC and 12 proline residues. One of these prolines, Pro220, is involved in a cis peptide bond. he folding mechanism of pelC involves two slow phases that have been attributed to proline isomerization.; GO: 0030570 pectate lyase activity, 0005576 extracellular region; PDB: 3T9G_B 3B90_B 3B8Y_A 3B4N_B 1EE6_A.
Probab=95.23 E-value=0.92 Score=37.71 Aligned_cols=129 Identities=17% Similarity=0.237 Sum_probs=69.9
Q ss_pred ecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec-CCCeeEecCCceeEEEEeeEEcCCce--eEEeeeccccCc
Q 027251 10 NDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT-GDDCVSVGPGATNLWIENVACGPGHG--ISIGSLGKEQQE 86 (226)
Q Consensus 10 ~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~-~DD~i~iksgs~nV~I~n~~~~~~~g--i~iGS~g~~~~~ 86 (226)
+..+++|+.|-.+ -.||||..+ +.+|+|+.... +.|++.+|+.+..++|.+.-...+.. |-.-.
T Consensus 61 ~GatlkNvIiG~~----~~dGIHC~G--~Ctl~NVwwedVcEDA~T~kg~~~~~~I~ggga~~A~DKV~Q~Ng------- 127 (215)
T PF03211_consen 61 DGATLKNVIIGAN----QADGIHCKG--SCTLENVWWEDVCEDAATFKGDGGTVTIIGGGARNASDKVFQHNG------- 127 (215)
T ss_dssp TTEEEEEEEETSS-----TT-EEEES--CEEEEEEEESS-SSESEEEESSEEEEEEESTEEEEEEEEEEEE-S-------
T ss_pred CCCEEEEEEEcCC----CcCceEEcC--CEEEEEEEecccceeeeEEcCCCceEEEeCCcccCCCccEEEecC-------
Confidence 3456777776443 347888776 66778877775 77888888744466666665554433 33211
Q ss_pred CCEEEEEEEeeEEEccCceEEEEEeCC--CCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEeEEEE
Q 027251 87 AGVQNVTVTSVTFTGTQNGVRIKSWGR--TSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQ 164 (226)
Q Consensus 87 ~~v~nI~~~n~~~~~~~~gi~iks~~g--~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ 164 (226)
--.+.|+|.+..+ .|-...|-.. ..++.=|.|.+++........-..|..+|++ ..+|+++.++
T Consensus 128 --~Gtv~I~nF~a~d--~GKl~RSCGnC~~~~~~~r~v~v~~~~~~~~~~~~giN~N~gD----------~ati~~~~~~ 193 (215)
T PF03211_consen 128 --GGTVTIKNFYAED--FGKLYRSCGNCSNNGGPRRHVVVNNVVAGPGNSLVGINRNYGD----------TATISNSCIK 193 (215)
T ss_dssp --SEEEEEEEEEEEE--EEEEEEE-TTETS----EEEEEEEEEEEEEEEEEEEEEEGGTT----------TEEEEEEEEE
T ss_pred --ceeEEEEeEEEcC--CCEEEEeCCCCCCCCCcceEEEEeeEEecCCcEEEEEECCCCC----------eEEEEEEEec
Confidence 1245666655443 2333333311 0123456677776665543333456666653 4677777766
Q ss_pred e
Q 027251 165 D 165 (226)
Q Consensus 165 n 165 (226)
.
T Consensus 194 ~ 194 (215)
T PF03211_consen 194 G 194 (215)
T ss_dssp E
T ss_pred C
Confidence 6
No 39
>PLN02480 Probable pectinesterase
Probab=94.20 E-value=1.8 Score=38.67 Aligned_cols=112 Identities=4% Similarity=0.028 Sum_probs=66.6
Q ss_pred ceecEEEEeEEEEcCCC-----CCCCCeEEe-cCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeec
Q 027251 8 GCNDVKVQGVKVSAAGE-----SPNTDGIHV-QSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLG 81 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~-----~~ntDGidi-~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g 81 (226)
..++++++||+|.|... .....++.+ ...+.+.+++|.+....|-+-... ..-.++||++.+.-.+=+|.
T Consensus 130 ~a~~f~a~nLTf~Nta~~g~~~~~~~QAVAl~v~gDra~f~~c~f~G~QDTLy~~~--gR~yf~~C~IeG~VDFIFG~-- 205 (343)
T PLN02480 130 EAPHFVAFGISIRNDAPTGMAFTSENQSVAAFVGADKVAFYHCAFYSTHNTLFDYK--GRHYYHSCYIQGSIDFIFGR-- 205 (343)
T ss_pred ECCCEEEEeeEEEecCCCCCCCCCCCceEEEEecCCcEEEEeeEEecccceeEeCC--CCEEEEeCEEEeeeeEEccc--
Confidence 45788899999988521 112345555 357889999999988777765443 35677888887554555654
Q ss_pred cccCcCCEEEEEEEeeEEEccCc-----eEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 82 KEQQEAGVQNVTVTSVTFTGTQN-----GVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 82 ~~~~~~~v~nI~~~n~~~~~~~~-----gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+..... .-.|-.. +.....-....|.|+++...
T Consensus 206 --------g~a~fe~C~i~s~~~~~~~~~G~ITA~-~r~~~~~~GfvF~~C~i~g~ 252 (343)
T PLN02480 206 --------GRSIFHNCEIFVIADRRVKIYGSITAH-NRESEDNSGFVFIKGKVYGI 252 (343)
T ss_pred --------eeEEEEccEEEEecCCCCCCceEEEcC-CCCCCCCCEEEEECCEEccc
Confidence 244778888775321 1112222 21112223467788887653
No 40
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=94.11 E-value=1.9 Score=40.99 Aligned_cols=113 Identities=7% Similarity=0.081 Sum_probs=75.7
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+.+.+++|.|....|-.-..+ ..-.+++|++.+.-.+-+|.
T Consensus 327 v~~~~f~a~~it~~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtVDFIFG~------ 398 (553)
T PLN02708 327 VLGDGFMARDLTIQNTAGPDAHQAVAFRSDSDLSVIENCEFLGNQDTLYAHS--LRQFYKSCRIQGNVDFIFGN------ 398 (553)
T ss_pred EEcCCeEEEeeEEEcCCCCCCCceEEEEecCCcEEEEeeeeeeccccceeCC--CceEEEeeEEeecCCEEecC------
Confidence 3567899999999985322222344433 46899999999999888777665 34578999999776777766
Q ss_pred cCCEEEEEEEeeEEEccCc--------eEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQN--------GVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~--------gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+....+ .-.| +..++ ....-..+.|.||++...
T Consensus 399 ----a~avfq~c~i~~~~~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~C~it~~ 449 (553)
T PLN02708 399 ----SAAVFQDCAILIAPRQLKPEKGENNAV-TAHGRTDPAQSTGFVFQNCLINGT 449 (553)
T ss_pred ----ceEEEEccEEEEeccccCCCCCCceEE-EeCCCCCCCCCceEEEEccEEecC
Confidence 356899999974211 1233 22221 123345789999999764
No 41
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=94.08 E-value=0.67 Score=40.49 Aligned_cols=112 Identities=13% Similarity=0.188 Sum_probs=65.5
Q ss_pred ceecEEEEeEEEEcCCCCCC--CCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 8 GCNDVKVQGVKVSAAGESPN--TDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~n--tDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
..+++.++||+|.|...... .-.+.+ ..+.+.+++|.|....|-+-..+ ....++||++.+.-.+=+|+.
T Consensus 85 ~a~~f~~~nit~~Nt~g~~~~qAvAl~~-~~d~~~f~~c~~~g~QDTL~~~~--~r~y~~~c~IeG~vDFIfG~~----- 156 (298)
T PF01095_consen 85 NADDFTAENITFENTAGPSGGQAVALRV-SGDRAAFYNCRFLGYQDTLYANG--GRQYFKNCYIEGNVDFIFGNG----- 156 (298)
T ss_dssp -STT-EEEEEEEEEHCSGSG----SEEE-T-TSEEEEEEEEE-STT-EEE-S--SEEEEES-EEEESEEEEEESS-----
T ss_pred cccceeeeeeEEecCCCCcccceeeeee-cCCcEEEEEeEEccccceeeecc--ceeEEEeeEEEecCcEEECCe-----
Confidence 56899999999998431111 123344 45889999999999888887765 367889999997767777762
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
...|+||++.... .+..|-.........-....|.|+++...
T Consensus 157 -----~a~f~~c~i~~~~~~~~~~~~ItA~~r~~~~~~~G~vF~~c~i~~~ 202 (298)
T PF01095_consen 157 -----TAVFENCTIHSRRPGGGQGGYITAQGRTSPSQKSGFVFDNCTITGD 202 (298)
T ss_dssp -----EEEEES-EEEE--SSTSSTEEEEEE---CTTSS-EEEEES-EEEES
T ss_pred -----eEEeeeeEEEEeccccccceeEEeCCccccCCCeEEEEEEeEEecC
Confidence 3478899988532 12334322110122345678999999865
No 42
>PLN02665 pectinesterase family protein
Probab=93.82 E-value=4.3 Score=36.54 Aligned_cols=116 Identities=9% Similarity=0.092 Sum_probs=73.2
Q ss_pred EEceecEEEEeEEEEcCCCC-----CCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEee
Q 027251 6 INGCNDVKVQGVKVSAAGES-----PNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGS 79 (226)
Q Consensus 6 ~~~~~nV~I~~i~i~~~~~~-----~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS 79 (226)
...++++..+||+|.|.... .....+.+. ..+.+.+++|.+....|-+-... ..-.++||++.+.-.+=+|.
T Consensus 150 ~v~a~~F~a~nitf~Nta~~~~~~~~g~QAVAl~v~gDka~f~~C~f~G~QDTL~~~~--gr~yf~~CyIeG~VDFIFG~ 227 (366)
T PLN02665 150 IVESDYFMAANIIIKNSAPRPDGKRKGAQAVAMRISGDKAAFYNCRFIGFQDTLCDDK--GRHFFKDCYIEGTVDFIFGS 227 (366)
T ss_pred EEECCCeEEEeeEEEeCCCCcCCCCCCcceEEEEEcCCcEEEEcceeccccceeEeCC--CCEEEEeeEEeeccceeccc
Confidence 34678999999999995321 111233332 46899999999999888876554 35778899998766666665
Q ss_pred eccccCcCCEEEEEEEeeEEEccCce-EEEEEeCCC-CCceEEeEEEEeEEEeCCC
Q 027251 80 LGKEQQEAGVQNVTVTSVTFTGTQNG-VRIKSWGRT-SGGFARNILFQHALMNNVD 133 (226)
Q Consensus 80 ~g~~~~~~~v~nI~~~n~~~~~~~~g-i~iks~~g~-~~g~v~nI~f~ni~~~~~~ 133 (226)
. ...|++|++.....+ ...-+..++ ....-....|.||++....
T Consensus 228 g----------~a~fe~C~i~s~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~~ 273 (366)
T PLN02665 228 G----------KSLYLNTELHVVGDGGLRVITAQARNSEAEDSGFSFVHCKVTGTG 273 (366)
T ss_pred c----------ceeeEccEEEEecCCCcEEEEcCCCCCCCCCceEEEEeeEEecCC
Confidence 2 337888888764443 112222221 1112235678888888753
No 43
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=93.42 E-value=2.1 Score=40.50 Aligned_cols=114 Identities=7% Similarity=0.031 Sum_probs=73.8
Q ss_pred EEceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeecccc
Q 027251 6 INGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQ 84 (226)
Q Consensus 6 ~~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~ 84 (226)
....+++..+|++|.|.........+.+. ..+.+.+++|.|....|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 315 ~v~~~~F~a~nit~~Ntag~~~~QAVAl~v~~D~~~fy~C~~~G~QDTLy~~~--~rqyy~~C~I~GtVDFIFG~----- 387 (537)
T PLN02506 315 AVSGRGFIARDITFRNTAGPQNHQAVALRVDSDQSAFYRCSMEGYQDTLYAHS--LRQFYRECEIYGTIDFIFGN----- 387 (537)
T ss_pred EEEcCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeecccccceecC--CceEEEeeEEecccceEccC-----
Confidence 34567889999999985432233344433 46899999999999888776665 34588999998766777765
Q ss_pred CcCCEEEEEEEeeEEEccCc----eEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 85 QEAGVQNVTVTSVTFTGTQN----GVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 85 ~~~~v~nI~~~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+..... .-.|- ..++ ....-..+.|.|+++...
T Consensus 388 -----a~avfq~C~i~~r~~~~~~~~~iT-A~~r~~~~~~~G~vf~~c~i~~~ 434 (537)
T PLN02506 388 -----GAAVLQNCKIYTRVPLPLQKVTIT-AQGRKSPHQSTGFSIQDSYVLAT 434 (537)
T ss_pred -----ceeEEeccEEEEccCCCCCCceEE-ccCCCCCCCCcEEEEEcCEEccC
Confidence 235888888875311 12332 2221 112234678999988763
No 44
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=93.26 E-value=7.3 Score=36.79 Aligned_cols=113 Identities=5% Similarity=0.055 Sum_probs=74.4
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|.........+.+. ..+.+.+++|.+....|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 310 v~~~~F~a~nitf~Ntag~~~~QAVALrv~gDr~~fy~C~f~GyQDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 381 (529)
T PLN02170 310 AMGDGFIARDITFVNSAGPNSEQAVALRVGSDKSVVYRCSVEGYQDSLYTHS--KRQFYRETDITGTVDFIFGN------ 381 (529)
T ss_pred EEcCCeEEEeeEEEecCCCCCCceEEEEecCCcEEEEeeeEeccCCcceeCC--CCEEEEeeEEccccceeccc------
Confidence 4567889999999985322222334432 46899999999999888776665 34578999999766777765
Q ss_pred cCCEEEEEEEeeEEEccCc---eEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQN---GVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~---gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+..... .-.|- .+++ ....-....|.||++...
T Consensus 382 ----a~avFq~C~I~~~~~~~~~g~IT-Aq~R~~~~~~~Gfvf~~C~it~~ 427 (529)
T PLN02170 382 ----SAVVFQSCNIAARKPSGDRNYVT-AQGRSDPNQNTGISIHNCRITAE 427 (529)
T ss_pred ----ceEEEeccEEEEecCCCCceEEE-ecCCCCCCCCceEEEEeeEEecC
Confidence 345888888875321 22332 2221 123335688999999874
No 45
>PLN02916 pectinesterase family protein
Probab=93.25 E-value=3.6 Score=38.53 Aligned_cols=113 Identities=10% Similarity=0.047 Sum_probs=73.3
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|.........+.+. ..+...+++|.|....|-.-..++ .-.+++|++.+.-.+-+|.
T Consensus 274 v~~~~F~A~nitf~Ntag~~~~QAVALrv~~D~a~fy~C~f~G~QDTLy~~~~--Rqyy~~C~I~GtVDFIFG~------ 345 (502)
T PLN02916 274 VSGDGFWARDITFENTAGPHKHQAVALRVSSDLSVFYRCSFKGYQDTLFVHSL--RQFYRDCHIYGTIDFIFGD------ 345 (502)
T ss_pred EECCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEeccCceeEeCCC--CEEEEecEEecccceeccC------
Confidence 3457888999999985322233444443 468899999999998887776653 4678899988766676765
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|-.. ++ ....-..+.|.||++...
T Consensus 346 ----a~avFq~C~I~~~~~~~~~~g~ITAq-~r~~~~~~tGfvf~~C~it~~ 392 (502)
T PLN02916 346 ----AAVVFQNCDIFVRRPMDHQGNMITAQ-GRDDPHENTGISIQHSRVRAS 392 (502)
T ss_pred ----ceEEEecCEEEEecCCCCCcceEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 34578888886532 12233222 21 123335688899988764
No 46
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=93.20 E-value=1.7 Score=39.68 Aligned_cols=57 Identities=28% Similarity=0.388 Sum_probs=34.7
Q ss_pred eeEEEEeeEEcCCceeEEeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 60 TNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 60 ~nV~I~n~~~~~~~gi~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
.|=+|+|.....++|+-+|-.|+ .+.++||++++| ...|+.+++.. - .|.||++-..
T Consensus 311 tnHiidNi~~~~~lGVG~~~DG~---~~yvsni~~~d~----~g~G~~~~~~~----~-----~ftNitvId~ 367 (549)
T PF09251_consen 311 TNHIIDNILVRGSLGVGIGMDGK---GGYVSNITVQDC----AGAGIFIRGTN----K-----VFTNITVIDT 367 (549)
T ss_dssp ---EEEEEEEES-SSESCEEECC---S-EEEEEEEES-----SSESEEEECCS----------EEEEEEEES-
T ss_pred hhhhhhhhheeccceeeeeecCC---CceEeeEEeecc----cCCceEEeecC----C-----ceeeeEEEec
Confidence 57789999999999988877763 345777777665 34577776553 2 5666666544
No 47
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=93.01 E-value=2.3 Score=39.83 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=73.8
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|.........+.+. ..+.+.+++|.|....|-+-..++ .-.+++|++.+.-.+-+|..
T Consensus 267 v~~~~F~a~nitf~Ntag~~~~QAvAl~v~~D~~~fy~c~~~G~QDTLy~~~~--rqyy~~C~I~G~vDFIFG~a----- 339 (497)
T PLN02698 267 ITGDGFIARDIGFKNAAGPKGEQAIALSITSDHSVLYRCSIAGYQDTLYAAAL--RQFYRECDIYGTIDFIFGNA----- 339 (497)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeecccchheeCCC--cEEEEeeEEEeccceEeccc-----
Confidence 3567899999999985322222344433 469999999999998887776652 35888999986667777652
Q ss_pred cCCEEEEEEEeeEEEccCc--e--EEEEEeCCCCCceEEeEEEEeEEEeCCC
Q 027251 86 EAGVQNVTVTSVTFTGTQN--G--VRIKSWGRTSGGFARNILFQHALMNNVD 133 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~--g--i~iks~~g~~~g~v~nI~f~ni~~~~~~ 133 (226)
...|+||++..... + -.|-.........-..+.|.|+++....
T Consensus 340 -----~avf~~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~~ 386 (497)
T PLN02698 340 -----AAVFQNCYLFLRRPHGKSYNVILANGRSDPGQNTGFSLQSCRIRTSS 386 (497)
T ss_pred -----ceeecccEEEEecCCCCCceEEEecCCCCCCCCceEEEEeeEEecCC
Confidence 34888888875321 1 1222211111223356889999887653
No 48
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=92.94 E-value=2.9 Score=39.82 Aligned_cols=113 Identities=8% Similarity=0.058 Sum_probs=70.3
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccCc
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQE 86 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~~ 86 (226)
..+++..+|++|.|.........+.+. ..+...+++|.|....|-.-..+ ..-.+++|++.+.-.+=+|.
T Consensus 338 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 408 (566)
T PLN02713 338 VGQNFVAVNITFRNTAGPAKHQAVALRSGADLSTFYSCSFEAYQDTLYTHS--LRQFYRECDIYGTVDFIFGN------- 408 (566)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeeccCCcceEECC--CCEEEEeeEEecccceeccc-------
Confidence 458889999999985322233344433 46888999999998888776665 24588888887665666655
Q ss_pred CCEEEEEEEeeEEEccC----ceEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 87 AGVQNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 87 ~~v~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
-.+.|+||.+.... ..-.|-.........-..+.|.|+++...
T Consensus 409 ---a~avfq~C~i~~~~~~~~~~~~iTAq~r~~~~~~~G~vf~~c~i~~~ 455 (566)
T PLN02713 409 ---AAVVFQNCNLYPRLPMQGQFNTITAQGRTDPNQNTGTSIQNCTIKAA 455 (566)
T ss_pred ---ceEEEeccEEEEecCCCCCcceeeecCCCCCCCCCEEEEEcCEEecC
Confidence 34578888886531 11122221110122334678888888754
No 49
>PLN02682 pectinesterase family protein
Probab=92.92 E-value=5.2 Score=36.04 Aligned_cols=114 Identities=6% Similarity=-0.006 Sum_probs=72.0
Q ss_pred EceecEEEEeEEEEcCCCC-----CCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 7 NGCNDVKVQGVKVSAAGES-----PNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~-----~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
...+++..+||+|.|.... .....+.+. ..+.+.+++|.+....|-+-... ..-.++||++.+.-.+-+|.
T Consensus 160 v~a~~F~a~nlTf~Nt~~~~~~g~~g~QAVAL~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG~- 236 (369)
T PLN02682 160 VNSPYFIAKNITFKNTAPVPPPGALGKQAVALRISADTAAFYGCKFLGAQDTLYDHL--GRHYFKDCYIEGSVDFIFGN- 236 (369)
T ss_pred EECCCeEEEeeEEEcccccCCCCCCcccEEEEEecCCcEEEEcceEeccccceEECC--CCEEEEeeEEcccccEEecC-
Confidence 3567899999999985311 112233332 46999999999999888776654 35788999998766677765
Q ss_pred ccccCcCCEEEEEEEeeEEEccCc-eEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQN-GVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~-gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
-...|++|.+..... .-.|-.........-....|.|+++...
T Consensus 237 ---------g~a~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 280 (369)
T PLN02682 237 ---------GLSLYEGCHLHAIARNFGALTAQKRQSVLEDTGFSFVNCKVTGS 280 (369)
T ss_pred ---------ceEEEEccEEEEecCCCeEEecCCCCCCCCCceEEEEeeEecCC
Confidence 245788888875322 1223222110112234678888888764
No 50
>PLN02432 putative pectinesterase
Probab=92.71 E-value=5.6 Score=34.70 Aligned_cols=112 Identities=9% Similarity=0.045 Sum_probs=70.5
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|... .....+.+. ..+.+.+.+|.|....|-+-... ..-.++||++.+.-.+-+|+
T Consensus 91 v~a~~f~a~nlt~~Nt~g-~~~QAvAl~v~gDr~~f~~c~~~G~QDTLy~~~--gr~yf~~c~I~G~VDFIFG~------ 161 (293)
T PLN02432 91 VLASDFVGRFLTIQNTFG-SSGKAVALRVAGDRAAFYGCRILSYQDTLLDDT--GRHYYRNCYIEGATDFICGN------ 161 (293)
T ss_pred EECCCeEEEeeEEEeCCC-CCCceEEEEEcCCcEEEEcceEecccceeEECC--CCEEEEeCEEEecccEEecC------
Confidence 355788899999998531 122334333 45889999999998888776654 35688899988666677765
Q ss_pred cCCEEEEEEEeeEEEccCc-eEEEEEeCCCCCceEEeEEEEeEEEeC
Q 027251 86 EAGVQNVTVTSVTFTGTQN-GVRIKSWGRTSGGFARNILFQHALMNN 131 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~-gi~iks~~g~~~g~v~nI~f~ni~~~~ 131 (226)
-...|++|.+..... .-.|-.........-....|.|+++..
T Consensus 162 ----g~a~Fe~c~i~s~~~~~g~itA~~r~~~~~~~Gfvf~~c~itg 204 (293)
T PLN02432 162 ----AASLFEKCHLHSLSPNNGAITAQQRTSASENTGFTFLGCKLTG 204 (293)
T ss_pred ----ceEEEEeeEEEEecCCCCeEEecCCCCCCCCceEEEEeeEEcc
Confidence 235788888865321 123322211011222357888888875
No 51
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=92.43 E-value=9.8 Score=35.98 Aligned_cols=114 Identities=6% Similarity=0.072 Sum_probs=73.1
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+.+.+++|.|....|-+-..++ .-.+++|++.+.-.+-+|.
T Consensus 302 v~a~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~~--Rqyy~~C~IeGtVDFIFG~------ 373 (530)
T PLN02933 302 VKGKGFIAKDISFVNYAGPAKHQAVALRSGSDHSAFYRCEFDGYQDTLYVHSA--KQFYRECDIYGTIDFIFGN------ 373 (530)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEEeEEEecccccccCCC--ceEEEeeEEecccceeccC------
Confidence 3567888999999985322223344443 468999999999988887666653 4588999998766777765
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|-.........-..+.|.|+++...
T Consensus 374 ----a~avFq~C~i~~~~~~~~~~~~iTAq~r~~~~~~tGfvf~~C~it~~ 420 (530)
T PLN02933 374 ----AAVVFQNCSLYARKPNPNHKIAFTAQSRNQSDQPTGISIISSRILAA 420 (530)
T ss_pred ----ceEEEeccEEEEeccCCCCceEEEecCCCCCCCCceEEEEeeEEecC
Confidence 23578888886532 11223222111122334688999999764
No 52
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=92.43 E-value=4 Score=38.75 Aligned_cols=113 Identities=8% Similarity=0.040 Sum_probs=71.7
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|+++.|.........+.+. ..+...+++|.|....|-.-..+ ..-.+++|++.+.-.+=+|.
T Consensus 320 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 391 (548)
T PLN02301 320 AVGDGFIAQDIWFQNTAGPEKHQAVALRVSADQAVINRCRIDAYQDTLYAHS--LRQFYRDSYITGTVDFIFGN------ 391 (548)
T ss_pred EECCceEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeeeeccccceecC--CcEEEEeeEEEeccceeccc------
Confidence 3457888999999985322222334433 46889999999998888776665 24588889888666666655
Q ss_pred cCCEEEEEEEeeEEEccCc----eEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQN----GVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+..... .-.|- ..++ ....-..+.|.|+++...
T Consensus 392 ----a~avfq~c~i~~~~~~~~~~~~iT-Aqgr~~~~~~tG~vf~~c~i~~~ 438 (548)
T PLN02301 392 ----AAVVFQNCKIVARKPMAGQKNMVT-AQGRTDPNQNTGISIQKCDIIAS 438 (548)
T ss_pred ----ceeEEeccEEEEecCCCCCCceEE-ecCCCCCCCCCEEEEEeeEEecC
Confidence 345788888865321 11222 2221 122345688999988764
No 53
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=92.41 E-value=0.55 Score=40.75 Aligned_cols=10 Identities=40% Similarity=0.644 Sum_probs=4.5
Q ss_pred EEEEEEEeeE
Q 027251 89 VQNVTVTSVT 98 (226)
Q Consensus 89 v~nI~~~n~~ 98 (226)
++|..+.|++
T Consensus 245 vknfvvanit 254 (464)
T PRK10123 245 VKNFVVANIT 254 (464)
T ss_pred hhhEEEEecc
Confidence 4444444443
No 54
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=92.35 E-value=4.8 Score=36.87 Aligned_cols=116 Identities=13% Similarity=0.117 Sum_probs=75.1
Q ss_pred EceecEEEEeEEEEcCCC----CCCCCeEEec-CCccEEEEeeEEecCCCeeEecCC----------ceeEEEEeeEEcC
Q 027251 7 NGCNDVKVQGVKVSAAGE----SPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPG----------ATNLWIENVACGP 71 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~----~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksg----------s~nV~I~n~~~~~ 71 (226)
...+++..+||+|.|... ..+...+.+. ..+.+.+++|.|....|-+-..+. ...-.+++|++.+
T Consensus 203 v~ad~F~a~NLTf~Ntag~~~~~~~~QAVALrv~GDra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG 282 (422)
T PRK10531 203 SQNNGLQLQNLTIENTLGDSVDAGNHPAVALRTDGDKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEG 282 (422)
T ss_pred EECCCEEEEeeEEEeCCCCCCCCCcceeEEEEEcCCcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEee
Confidence 456889999999999532 1122333332 468999999999998887766321 1258899999997
Q ss_pred CceeEEeeeccccCcCCEEEEEEEeeEEEccCc----eEEEEEeCCCCCceEEeEEEEeEEEeCCC
Q 027251 72 GHGISIGSLGKEQQEAGVQNVTVTSVTFTGTQN----GVRIKSWGRTSGGFARNILFQHALMNNVD 133 (226)
Q Consensus 72 ~~gi~iGS~g~~~~~~~v~nI~~~n~~~~~~~~----gi~iks~~g~~~g~v~nI~f~ni~~~~~~ 133 (226)
.-.+-+|. -...|+||++..... .-.|-.. ......-....|.|+++....
T Consensus 283 ~VDFIFG~----------g~AvFenC~I~s~~~~~~~~g~ITA~-~t~~~~~~GfvF~nCrit~~g 337 (422)
T PRK10531 283 DVDFVFGR----------GAVVFDNTEFRVVNSRTQQEAYVFAP-ATLPNIYYGFLAINSRFNASG 337 (422)
T ss_pred cccEEccC----------ceEEEEcCEEEEecCCCCCceEEEec-CCCCCCCCEEEEECCEEecCC
Confidence 66777766 245788998876321 1222211 111233346789999998743
No 55
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=92.32 E-value=3.8 Score=38.80 Aligned_cols=112 Identities=9% Similarity=0.094 Sum_probs=71.4
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccCc
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQE 86 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~~ 86 (226)
..+++..+||+|.|.........+.+. ..+.+.+++|.|....|-+-..+ ..-.+++|++.+.-.+=+|.
T Consensus 315 ~~~~F~a~nitf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 385 (541)
T PLN02416 315 SGEGFLARDITIENTAGPEKHQAVALRVNADLVALYRCTINGYQDTLYVHS--FRQFYRECDIYGTIDYIFGN------- 385 (541)
T ss_pred ECCCeEEEeeEEEECCCCCCCceEEEEEcCccEEEEcceEecccchhccCC--CceEEEeeEEeeccceeecc-------
Confidence 468888999999985432222334432 46889999999998888766554 35588899988766666765
Q ss_pred CCEEEEEEEeeEEEccCc--e--EEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 87 AGVQNVTVTSVTFTGTQN--G--VRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 87 ~~v~nI~~~n~~~~~~~~--g--i~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+..... | -.| +.+++ ....-....|.|+++...
T Consensus 386 ---a~avfq~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~ 432 (541)
T PLN02416 386 ---AAVVFQACNIVSKMPMPGQFTVI-TAQSRDTPDEDTGISIQNCSILAT 432 (541)
T ss_pred ---ceEEEeccEEEEecCCCCCceEE-ECCCCCCCCCCCEEEEEeeEEecC
Confidence 345788888865321 1 122 22221 112234688999988754
No 56
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=92.26 E-value=6.6 Score=37.05 Aligned_cols=113 Identities=4% Similarity=0.024 Sum_probs=71.7
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 290 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 361 (520)
T PLN02201 290 VSGRGFIARDITFQNTAGPEKHQAVALRSDSDLSVFYRCAMRGYQDTLYTHT--MRQFYRECRITGTVDFIFGD------ 361 (520)
T ss_pred EECCCeEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeeeeccCCeeEeCC--CCEEEEeeEEeecccEEecC------
Confidence 3567888999999985322223344433 46889999999998888776665 24577888888666677765
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|-.. ++ ....-....|.|+++...
T Consensus 362 ----a~avf~~C~i~~~~~~~~~~~~iTAq-~r~~~~~~~Gfvf~~C~it~~ 408 (520)
T PLN02201 362 ----ATAVFQNCQILAKKGLPNQKNTITAQ-GRKDPNQPTGFSIQFSNISAD 408 (520)
T ss_pred ----ceEEEEccEEEEecCCCCCCceEEec-CCCCCCCCcEEEEEeeEEecC
Confidence 23588888887521 11223222 21 122334678888888764
No 57
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=92.14 E-value=3.8 Score=38.78 Aligned_cols=113 Identities=8% Similarity=0.019 Sum_probs=70.8
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+...+++|.|....|-.-..+ ..-.+++|++.+.-.+-+|.
T Consensus 309 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 380 (539)
T PLN02995 309 IEGLHFIAKGITFRNTAGPAKGQAVALRSSSDLSIFYKCSIEGYQDTLMVHS--QRQFYRECYIYGTVDFIFGN------ 380 (539)
T ss_pred EECCCeEEEeeEEEeCCCCCCCceEEEEEcCCceeEEcceEecccchhccCC--CceEEEeeEEeeccceEecc------
Confidence 3567888899999985322233444443 46889999999998877766554 24588888888665666654
Q ss_pred cCCEEEEEEEeeEEEccCc----eEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQN----GVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+..... .-.|-. .++ ....-..+.|.|+++...
T Consensus 381 ----a~avf~~C~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 427 (539)
T PLN02995 381 ----AAAVFQNCIILPRRPLKGQANVITA-QGRADPFQNTGISIHNSRILPA 427 (539)
T ss_pred ----cceEEeccEEEEecCCCCCcceEec-CCCCCCCCCceEEEEeeEEecC
Confidence 234788888765311 122322 221 122335678888888774
No 58
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=92.13 E-value=3.4 Score=40.06 Aligned_cols=68 Identities=4% Similarity=0.054 Sum_probs=43.0
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEE
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISI 77 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~i 77 (226)
..+++..+||+|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.+++|++.+.-.+-+
T Consensus 335 ~g~~F~a~nitf~Ntag~~~~QAVAlrv~~Dra~fy~C~f~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIF 403 (670)
T PLN02217 335 VGDHFIAKNIGFENTAGAIKHQAVAIRVLSDESIFYNCKFDGYQDTLYAHS--HRQFYRDCTISGTIDFLF 403 (670)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEcceeeeccchhccCC--CcEEEEeCEEEEeccEEe
Confidence 467888999999985432233344443 46889999999998777655554 234556665554333434
No 59
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=92.04 E-value=8 Score=36.30 Aligned_cols=113 Identities=8% Similarity=-0.005 Sum_probs=74.2
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccCc
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQE 86 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~~ 86 (226)
..+++..+|++|.|.........+.+. ..+...+++|.|....|-.-..+ ..-.+++|++.+.-.+-+|.
T Consensus 282 ~g~gF~A~nitf~Ntag~~~~QAVALrv~~Dra~Fy~C~f~GyQDTLy~~~--~RqyyrdC~I~GtVDFIFG~------- 352 (509)
T PLN02488 282 NGDGFIGIDMCFRNTAGPAKGPAVALRVSGDMSVIYRCRIEGYQDALYPHR--DRQFYRECFITGTVDFICGN------- 352 (509)
T ss_pred EcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEcceeeccCcceeeCC--CCEEEEeeEEeeccceEecc-------
Confidence 457888899999985322233445443 46899999999998888776554 35688999988766677765
Q ss_pred CCEEEEEEEeeEEEccCc----eEEEEEeCCC-CCceEEeEEEEeEEEeCCC
Q 027251 87 AGVQNVTVTSVTFTGTQN----GVRIKSWGRT-SGGFARNILFQHALMNNVD 133 (226)
Q Consensus 87 ~~v~nI~~~n~~~~~~~~----gi~iks~~g~-~~g~v~nI~f~ni~~~~~~ 133 (226)
-...|+||.+..... .-.|- .+++ ....-..+.|.|+++....
T Consensus 353 ---a~avFq~C~I~sr~~~~~~~~~IT-Aq~R~~~~~~tGfvf~~C~it~~~ 400 (509)
T PLN02488 353 ---AAAVFQFCQIVARQPMMGQSNVIT-AQSRESKDDNSGFSIQKCNITASS 400 (509)
T ss_pred ---eEEEEEccEEEEecCCCCCCEEEE-eCCCCCCCCCcEEEEEeeEEecCC
Confidence 356888888875321 12333 2221 1223346889999988754
No 60
>PLN02634 probable pectinesterase
Probab=91.90 E-value=5.7 Score=35.63 Aligned_cols=113 Identities=4% Similarity=-0.002 Sum_probs=70.2
Q ss_pred ceecEEEEeEEEEcCCC-----CCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeec
Q 027251 8 GCNDVKVQGVKVSAAGE-----SPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLG 81 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~-----~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g 81 (226)
..+++..+||+|.|... ......+.+. ..+.+.+++|.+....|-+-... ..-.++||++.+.-.+-+|.
T Consensus 147 ~a~~F~a~niTf~Nta~~~~~g~~~~QAVAl~v~gDra~f~~C~f~G~QDTL~~~~--gR~yf~~CyIeG~VDFIFG~-- 222 (359)
T PLN02634 147 YANYFTARNISFKNTAPAPMPGMQGWQAVAFRISGDKAFFFGCGFYGAQDTLCDDA--GRHYFKECYIEGSIDFIFGN-- 222 (359)
T ss_pred ECCCeEEEeCeEEeCCccCCCCCCCCceEEEEecCCcEEEEEeEEecccceeeeCC--CCEEEEeeEEcccccEEcCC--
Confidence 45788899999998531 1122333332 46889999999998888776554 36788888888665666665
Q ss_pred cccCcCCEEEEEEEeeEEEccCceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 82 KEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 82 ~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.........-+..++ ....-....|.|+++...
T Consensus 223 --------g~a~Fe~C~I~s~~~~~g~ITA~~R~~~~~~~GfvF~~C~vtg~ 266 (359)
T PLN02634 223 --------GRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFAFVGCRVTGT 266 (359)
T ss_pred --------ceEEEeccEEEEecCCCcEEEeCCCCCCCCCcEEEEEcCEEcCC
Confidence 2337888888754221111222221 112234578888888763
No 61
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=91.89 E-value=6.4 Score=37.77 Aligned_cols=113 Identities=5% Similarity=0.021 Sum_probs=72.5
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.+++|++.+.-.+=+|.
T Consensus 369 v~~~~F~a~nitf~Ntag~~~~QAVAl~v~~Dr~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 440 (596)
T PLN02745 369 ALGEGFMAKSMGFRNTAGPEKHQAVAIRVQSDRSIFLNCRFEGYQDTLYAQT--HRQFYRSCVITGTIDFIFGD------ 440 (596)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeecccccccCC--CcEEEEeeEEEeeccEEecc------
Confidence 3567888999999985322122334433 46899999999998888766554 35688999988765666765
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|- ..++ ....-..+.|.||++...
T Consensus 441 ----a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~Gfvf~~c~i~~~ 487 (596)
T PLN02745 441 ----AAAIFQNCLIFVRKPLPNQQNTVT-AQGRVDKFETTGIVLQNCRIAPD 487 (596)
T ss_pred ----eeEEEEecEEEEecCCCCCCceEE-ecCCCCCCCCceEEEEeeEEecC
Confidence 34588888886531 112232 2221 122345688999998864
No 62
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=91.88 E-value=5.5 Score=37.74 Aligned_cols=113 Identities=5% Similarity=0.019 Sum_probs=70.4
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.++||++.+.-.+=+|.
T Consensus 310 v~~~~F~a~~it~~Ntag~~~~QAvAlrv~~D~~~f~~C~~~gyQDTLy~~~--~rq~y~~c~I~GtVDFIFG~------ 381 (538)
T PLN03043 310 VSGERFVAVDVTFRNTAGPEKHQAVALRNNADLSTFYRCSFEGYQDTLYVHS--LRQFYRECDIYGTVDFIFGN------ 381 (538)
T ss_pred EECCCEEEEeeEEEECCCCCCCceEEEEEcCCcEEEEeeEEeccCcccccCC--CcEEEEeeEEeeccceEeec------
Confidence 3557888999999985322223344443 46888999999998888766554 34688888888666666665
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|-.. ++ ....-..+.|.|+++...
T Consensus 382 ----a~avfq~c~i~~r~~~~~~~~~iTA~-~r~~~~~~tG~~~~~c~i~~~ 428 (538)
T PLN03043 382 ----AAAIFQNCNLYARKPMANQKNAFTAQ-GRTDPNQNTGISIINCTIEAA 428 (538)
T ss_pred ----ceeeeeccEEEEecCCCCCCceEEec-CCCCCCCCceEEEEecEEecC
Confidence 34578888886531 11122222 21 112234678888888764
No 63
>PLN02304 probable pectinesterase
Probab=91.66 E-value=8.3 Score=34.86 Aligned_cols=113 Identities=7% Similarity=0.090 Sum_probs=72.3
Q ss_pred ceecEEEEeEEEEcCCCC-----CCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeec
Q 027251 8 GCNDVKVQGVKVSAAGES-----PNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLG 81 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~-----~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g 81 (226)
..+++..+||+|.|.... .....+.+. ..+.+.+++|.|....|-+-... ..-.++||++.+.-.+-+|.
T Consensus 160 ~a~~F~a~nITf~Nta~~~~~g~~~~QAVAL~v~gDra~fy~C~f~G~QDTLy~~~--gR~Yf~~CyIeG~VDFIFG~-- 235 (379)
T PLN02304 160 FASNFIAKNISFMNVAPIPKPGDVGAQAVAIRIAGDQAAFWGCGFFGAQDTLHDDR--GRHYFKDCYIQGSIDFIFGD-- 235 (379)
T ss_pred ECCCeEEEeeEEEecCCCCCCCCCCccEEEEEecCCcEEEEeceEecccceeEeCC--CCEEEEeeEEcccccEEecc--
Confidence 467889999999985311 122334433 46999999999999888876554 35789999999766777766
Q ss_pred cccCcCCEEEEEEEeeEEEccCce---------EEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 82 KEQQEAGVQNVTVTSVTFTGTQNG---------VRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 82 ~~~~~~~v~nI~~~n~~~~~~~~g---------i~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
-...|++|.+...... -.|-.........-....|.|+++...
T Consensus 236 --------g~A~Fe~C~I~s~~~~~~~g~~~~~G~ITA~~Rt~~~~~~GfvF~~C~itg~ 287 (379)
T PLN02304 236 --------ARSLYENCRLISMANPVPPGSKSINGAVTAHGRTSKDENTGFSFVNCTIGGT 287 (379)
T ss_pred --------ceEEEEccEEEEecCCcccccccCceEEEecCCCCCCCCceEEEECCEEccC
Confidence 2348888888753211 133222110112234567899988763
No 64
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=91.59 E-value=4.9 Score=38.32 Aligned_cols=113 Identities=6% Similarity=0.016 Sum_probs=72.3
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.++||++.+.-.+-+|.
T Consensus 342 v~~~~f~a~~itf~Ntag~~~~QAVAl~v~~D~~~fy~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 413 (565)
T PLN02468 342 VFGKGFMARDMGFRNTAGPIKHQAVALMSSADLSVFYRCTMDAFQDTLYAHA--QRQFYRECNIYGTVDFIFGN------ 413 (565)
T ss_pred EECCCeEEEEEEEEeCCCCCCCceEEEEEcCCcEEEEEeEEEeccchhccCC--CceEEEeeEEecccceeecc------
Confidence 3567899999999985322222334433 56899999999999888766654 34578899888766677765
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|-. +++ ....-..+.|.|+++...
T Consensus 414 ----a~avfq~c~i~~~~~~~~~~~~iTA-~~r~~~~~~~G~vf~~c~i~~~ 460 (565)
T PLN02468 414 ----SAVVFQNCNILPRRPMKGQQNTITA-QGRTDPNQNTGISIQNCTILPL 460 (565)
T ss_pred ----ceEEEeccEEEEecCCCCCCceEEe-cCCCCCCCCceEEEEccEEecC
Confidence 34578888886431 1122322 221 123345688888888864
No 65
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=91.50 E-value=6.1 Score=37.88 Aligned_cols=113 Identities=6% Similarity=0.075 Sum_probs=72.0
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccCc
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQE 86 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~~ 86 (226)
..+++..+||+|.|.........+.+. ..+...+.+|.|....|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 360 ~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~g~QDTLy~~~--~rq~y~~c~I~GtvDFIFG~------- 430 (587)
T PLN02313 360 VGERFLARDITFQNTAGPSKHQAVALRVGSDFSAFYQCDMFAYQDTLYVHS--NRQFFVKCHITGTVDFIFGN------- 430 (587)
T ss_pred ECCCeEEEeeEEEeCCCCCCCceEEEEecCCcEEEEeeeEecccchhccCC--CcEEEEeeEEeeccceeccc-------
Confidence 457888899999985322222334433 46888999999998888766665 24488889888766666654
Q ss_pred CCEEEEEEEeeEEEccCc--e--EEEEEeCCC-CCceEEeEEEEeEEEeCCC
Q 027251 87 AGVQNVTVTSVTFTGTQN--G--VRIKSWGRT-SGGFARNILFQHALMNNVD 133 (226)
Q Consensus 87 ~~v~nI~~~n~~~~~~~~--g--i~iks~~g~-~~g~v~nI~f~ni~~~~~~ 133 (226)
-...|+||.++.... | -.|- ..++ ....-..+.|.||++....
T Consensus 431 ---a~avfq~c~i~~r~~~~~~~~~iT-Aqgr~~~~~~tG~v~~~c~i~~~~ 478 (587)
T PLN02313 431 ---AAAVLQDCDINARRPNSGQKNMVT-AQGRSDPNQNTGIVIQNCRIGGTS 478 (587)
T ss_pred ---eeEEEEccEEEEecCCCCCcceEE-ecCCCCCCCCceEEEEecEEecCC
Confidence 346888888875311 1 1232 2221 1223456889999987643
No 66
>PLN02197 pectinesterase
Probab=91.31 E-value=6.5 Score=37.66 Aligned_cols=113 Identities=8% Similarity=0.129 Sum_probs=72.5
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+...+++|.|....|-+-..++ .-.+++|++.+.-.+-+|..
T Consensus 361 v~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~fy~C~f~GyQDTLy~~~~--Rqyy~~C~I~GtVDFIFG~a----- 433 (588)
T PLN02197 361 VESEGFMAKWIGFKNTAGPMGHQAVAIRVNGDRAVIFNCRFDGYQDTLYVNNG--RQFYRNIVVSGTVDFIFGKS----- 433 (588)
T ss_pred EECCcEEEEEeEEEeCCCCCCCceEEEEecCCcEEEEEeEEEecCcceEecCC--CEEEEeeEEEecccccccce-----
Confidence 3567889999999985322223344443 468999999999998887776652 45888898886656666552
Q ss_pred cCCEEEEEEEeeEEEccC--ce--EEEEEeCCCC--CceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ--NG--VRIKSWGRTS--GGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~--~g--i~iks~~g~~--~g~v~nI~f~ni~~~~~ 132 (226)
...|+||.+.... .| -.| +..+.. ...-..+.|.|+++...
T Consensus 434 -----~avfq~C~i~~r~~~~~~~~~i-TAqgr~~~~~~~tG~vf~~C~it~~ 480 (588)
T PLN02197 434 -----ATVIQNSLIVVRKGSKGQYNTV-TADGNEKGLAMKIGIVLQNCRIVPD 480 (588)
T ss_pred -----eeeeecCEEEEecCCCCCceeE-ECCCCCCCCCCCcEEEEEccEEecC
Confidence 2588888876421 11 122 233311 12335688888888764
No 67
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=91.01 E-value=0.38 Score=29.18 Aligned_cols=39 Identities=21% Similarity=0.219 Sum_probs=18.7
Q ss_pred eEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEE
Q 027251 30 GIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVAC 69 (226)
Q Consensus 30 Gidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~ 69 (226)
||.+..+.+.+|++..+....|+|.+.. +++-+|++.++
T Consensus 1 GI~l~~s~~~~i~~N~i~~~~~GI~~~~-s~~n~i~~N~~ 39 (44)
T TIGR03804 1 GIYLESSSNNTLENNTASNNSYGIYLTD-SSNNTLSNNTA 39 (44)
T ss_pred CEEEEecCCCEEECcEEeCCCCEEEEEe-CCCCEeECCEE
Confidence 3445445555555555555444555554 33444444333
No 68
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=90.88 E-value=7 Score=37.46 Aligned_cols=113 Identities=6% Similarity=0.056 Sum_probs=70.7
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+||+|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.+++|++.+.-.+=+|.
T Consensus 357 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~fy~C~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------ 428 (587)
T PLN02484 357 ATGAGFIARDMTFENWAGPAKHQAVALRVGADHAVVYRCNIIGYQDTLYVHS--NRQFFRECDIYGTVDFIFGN------ 428 (587)
T ss_pred EEcCCEEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeeEeccCcccccCC--CcEEEEecEEEeccceeccc------
Confidence 3567888899999985322222344433 46889999999998888766554 34578888888665666655
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||.+.... ..-.|-. .++ ....-..+.|.||++...
T Consensus 429 ----a~avfq~C~i~~~~~~~~~~~~ITA-q~r~~~~~~~G~vf~~c~i~~~ 475 (587)
T PLN02484 429 ----AAVVLQNCSIYARKPMAQQKNTITA-QNRKDPNQNTGISIHACRILAA 475 (587)
T ss_pred ----ceeEEeccEEEEecCCCCCceEEEe-cCCCCCCCCcEEEEEeeEEecC
Confidence 34578888886521 1123322 221 122345688888888764
No 69
>PLN02176 putative pectinesterase
Probab=90.63 E-value=11 Score=33.68 Aligned_cols=112 Identities=13% Similarity=0.143 Sum_probs=69.2
Q ss_pred ceecEEEEeEEEEcCCCC------CCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 8 GCNDVKVQGVKVSAAGES------PNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~------~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
..+++..+||+|.|.... .....+.+. ..+.+.+++|.+....|-+-... ..-.+++|++.+.-.+-+|.
T Consensus 120 ~a~~F~a~nlT~~Nt~~~~~~~~~~~~QAVAl~v~gDr~~f~~C~f~G~QDTLy~~~--gRqyf~~CyIeG~VDFIFG~- 196 (340)
T PLN02176 120 YASNIIITGITFKNTYNIASNSSRPTKPAVAARMLGDKYAIIDSSFDGFQDTLFDGK--GRHYYKRCVISGGIDFIFGY- 196 (340)
T ss_pred ECCCEEEEeeEEEeCCCccCCCCCCccceEEEEecCccEEEEccEEecccceeEeCC--cCEEEEecEEEecccEEecC-
Confidence 578899999999985321 112333332 45899999999998888776554 36788888888665666655
Q ss_pred ccccCcCCEEEEEEEeeEEEccCc-------eEEEEEeCCC-CCceEEeEEEEeEEEeCC
Q 027251 81 GKEQQEAGVQNVTVTSVTFTGTQN-------GVRIKSWGRT-SGGFARNILFQHALMNNV 132 (226)
Q Consensus 81 g~~~~~~~v~nI~~~n~~~~~~~~-------gi~iks~~g~-~~g~v~nI~f~ni~~~~~ 132 (226)
-...|+||++..... .-.|- ..++ ....-....|.|+++...
T Consensus 197 ---------a~a~Fe~C~I~s~~~~~~~~~~~g~IT-A~~r~~~~~~~GfvF~~C~itg~ 246 (340)
T PLN02176 197 ---------AQSIFEGCTLKLTLGIYPPNEPYGTIT-AQGRPSPSDKGGFVFKDCTVTGV 246 (340)
T ss_pred ---------ceEEEeccEEEEecccCCCCCCcEEEE-eCCCCCCCCCcEEEEECCEEccC
Confidence 235788888864310 11222 2121 112234577888888763
No 70
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=90.58 E-value=16 Score=34.88 Aligned_cols=113 Identities=7% Similarity=0.121 Sum_probs=72.5
Q ss_pred ceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccCc
Q 027251 8 GCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQE 86 (226)
Q Consensus 8 ~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~~ 86 (226)
..+++..+|++|.|.........+.+. ..+...+++|.|....|-+-..+ ..-.+++|++.+.-.+-+|.
T Consensus 345 ~~~~F~a~nitf~Ntag~~~~QAVAlrv~~D~~~f~~c~~~G~QDTLy~~~--~Rqyy~~C~I~GtVDFIFG~------- 415 (572)
T PLN02990 345 NGDHFTAKNIGFENTAGPEGHQAVALRVSADYAVFYNCQIDGYQDTLYVHS--HRQFFRDCTVSGTVDFIFGD------- 415 (572)
T ss_pred EcCCEEEEeeEEEeCCCCCCCceEEEEEcCCcEEEEeeeEecccchhccCC--CcEEEEeeEEecccceEccC-------
Confidence 457888999999985322223344443 46889999999998878766554 35678899988766677765
Q ss_pred CCEEEEEEEeeEEEccC--c--eEEEEEeCCC-CCceEEeEEEEeEEEeCCC
Q 027251 87 AGVQNVTVTSVTFTGTQ--N--GVRIKSWGRT-SGGFARNILFQHALMNNVD 133 (226)
Q Consensus 87 ~~v~nI~~~n~~~~~~~--~--gi~iks~~g~-~~g~v~nI~f~ni~~~~~~ 133 (226)
-...|+||.+.... . .-.|- .+++ ....-..+.|.||++....
T Consensus 416 ---a~avf~~C~i~~~~~~~~~~~~iT-Aq~r~~~~~~~G~vf~~C~it~~~ 463 (572)
T PLN02990 416 ---AKVVLQNCNIVVRKPMKGQSCMIT-AQGRSDVRESTGLVLQNCHITGEP 463 (572)
T ss_pred ---ceEEEEccEEEEecCCCCCceEEE-eCCCCCCCCCceEEEEeeEEecCc
Confidence 23588888887521 1 12332 2221 1122346889999998753
No 71
>PLN02314 pectinesterase
Probab=90.54 E-value=7.5 Score=37.27 Aligned_cols=114 Identities=7% Similarity=0.049 Sum_probs=71.3
Q ss_pred EceecEEEEeEEEEcCCCCCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeeccccC
Q 027251 7 NGCNDVKVQGVKVSAAGESPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLGKEQQ 85 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g~~~~ 85 (226)
...+++..+|++|.|.........+.+. ..+...+++|.|....|-.-..+ ..-.++||++.+.-.+-+|.
T Consensus 362 v~~~~F~a~~itf~Ntag~~~~QAvAlrv~~D~~~f~~c~~~G~QDTLy~~~--~rq~y~~C~I~GtvDFIFG~------ 433 (586)
T PLN02314 362 AAGKGFIAKDMGFINTAGAAKHQAVAFRSGSDMSVFYQCSFDAFQDTLYAHS--NRQFYRDCDITGTIDFIFGN------ 433 (586)
T ss_pred EEcCCeEEEeeEEEECCCCCCCceEEEEecCCcEEEEeeEEEeccchheeCC--CCEEEEeeEEEeccceeccC------
Confidence 3567888999999985322222334433 46888999999998888766655 24588888888665666654
Q ss_pred cCCEEEEEEEeeEEEccC----ceEEEEEeCCC-CCceEEeEEEEeEEEeCCC
Q 027251 86 EAGVQNVTVTSVTFTGTQ----NGVRIKSWGRT-SGGFARNILFQHALMNNVD 133 (226)
Q Consensus 86 ~~~v~nI~~~n~~~~~~~----~gi~iks~~g~-~~g~v~nI~f~ni~~~~~~ 133 (226)
-...|+||.+.... ..-.| +.+++ ....-..+.|.||++....
T Consensus 434 ----a~avf~~c~i~~~~~~~~~~~~i-TA~~r~~~~~~~G~vf~~c~i~~~~ 481 (586)
T PLN02314 434 ----AAVVFQNCNIQPRQPLPNQFNTI-TAQGKKDPNQNTGISIQRCTISAFG 481 (586)
T ss_pred ----ceeeeeccEEEEecCCCCCCceE-ecCCCCCCCCCCEEEEEeeEEecCC
Confidence 34578888886431 11122 22221 1233456788888887753
No 72
>PLN02497 probable pectinesterase
Probab=90.48 E-value=10 Score=33.75 Aligned_cols=114 Identities=11% Similarity=0.107 Sum_probs=71.1
Q ss_pred EceecEEEEeEEEEcCCCC-------CCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEe
Q 027251 7 NGCNDVKVQGVKVSAAGES-------PNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIG 78 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~~-------~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iG 78 (226)
...+++..+||+|.|.... .....+.+. ..+...+++|.+....|-+-... ..-.++||++.+.-.+-+|
T Consensus 112 v~a~~f~a~nlT~~Nt~~~~~~~~~~~~~QAVAl~v~gDr~~fy~C~f~G~QDTLy~~~--gRqyf~~C~IeG~VDFIFG 189 (331)
T PLN02497 112 TLADNTVVKSITFANSYNFPSKGNKNPRVPAVAAMIGGDKSAFYSCGFAGVQDTLWDSD--GRHYFKRCTIQGAVDFIFG 189 (331)
T ss_pred EecCCeEEEccEEEeCCCCccccCCCCCcceEEEEecCCcEEEEeeEEeccccceeeCC--CcEEEEeCEEEecccEEcc
Confidence 3567899999999985321 111233332 46899999999999888775554 3568889988866666666
Q ss_pred eeccccCcCCEEEEEEEeeEEEccCc------eEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 79 SLGKEQQEAGVQNVTVTSVTFTGTQN------GVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 79 S~g~~~~~~~v~nI~~~n~~~~~~~~------gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
. -...|+||.+..... .-.|-.........-....|.|+++...
T Consensus 190 ~----------g~a~Fe~C~I~s~~~~~~~~~~g~ITA~~r~~~~~~~GfvF~~C~itg~ 239 (331)
T PLN02497 190 S----------GQSIYESCVIQVLGGQLEPGLAGFITAQGRTNPYDANGFVFKNCLVYGT 239 (331)
T ss_pred C----------ceEEEEccEEEEecCcCCCCCceEEEecCCCCCCCCceEEEEccEEccC
Confidence 5 235788888875321 1233222110112334568888888763
No 73
>PLN02671 pectinesterase
Probab=90.16 E-value=14 Score=33.28 Aligned_cols=114 Identities=10% Similarity=0.098 Sum_probs=70.7
Q ss_pred EceecEEEEeEEEEcCCC----CCCCCeEEec-CCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCceeEEeeec
Q 027251 7 NGCNDVKVQGVKVSAAGE----SPNTDGIHVQ-SSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGHGISIGSLG 81 (226)
Q Consensus 7 ~~~~nV~I~~i~i~~~~~----~~ntDGidi~-~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~gi~iGS~g 81 (226)
...+++..+||+|.|... ........+. ..+.+.+++|.+....|-+-...| .-.++||++.+.-.+=+|.
T Consensus 151 v~a~~F~a~nitfeNt~~~~~g~~~~QAVALrv~gDra~f~~c~f~G~QDTLy~~~g--R~yf~~CyIeG~VDFIFG~-- 226 (359)
T PLN02671 151 IESDYFCATGITFENTVVAEPGGQGMQAVALRISGDKAFFYKVRVLGAQDTLLDETG--SHYFYQCYIQGSVDFIFGN-- 226 (359)
T ss_pred EECCceEEEeeEEEcCCCCCCCCCCccEEEEEEcCccEEEEcceEeccccccEeCCC--cEEEEecEEEEeccEEecc--
Confidence 355788888999998521 1122333332 468999999999988887765542 4688999988665666665
Q ss_pred cccCcCCEEEEEEEeeEEEccCc-eEEEEEeCCCCCceEEeEEEEeEEEeCC
Q 027251 82 KEQQEAGVQNVTVTSVTFTGTQN-GVRIKSWGRTSGGFARNILFQHALMNNV 132 (226)
Q Consensus 82 ~~~~~~~v~nI~~~n~~~~~~~~-gi~iks~~g~~~g~v~nI~f~ni~~~~~ 132 (226)
-...|++|.+..... .-.|-.........-....|.|+++...
T Consensus 227 --------g~A~Fe~C~I~s~~~~~G~ITA~~r~~~~~~~GfvF~~C~itg~ 270 (359)
T PLN02671 227 --------AKSLYQDCVIQSTAKRSGAIAAHHRDSPTEDTGFSFVNCVINGT 270 (359)
T ss_pred --------eeEEEeccEEEEecCCCeEEEeeccCCCCCCccEEEEccEEccC
Confidence 235888888875321 1233222110112234578999988763
No 74
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The TSP C-terminal domain adopts a structure that consists of a single-stranded right-handed beta-helix, which in turn is made of parallel beta-strands and short turns. They are required for recognition of the 0-antigenic repeating units of the cell surface, and for subsequent infection of the bacterial cell by the phage []. ; PDB: 1QA3_A 1QRB_A 2XC1_C 1QA2_A 1TYX_A 2VFQ_A 2VFO_A 1TYU_A 2VFN_A 1QA1_A ....
Probab=90.02 E-value=11 Score=34.62 Aligned_cols=68 Identities=21% Similarity=0.221 Sum_probs=29.4
Q ss_pred eeEEEEeeEEcCC--ceeEEeeecc--cc-------------CcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeE
Q 027251 60 TNLWIENVACGPG--HGISIGSLGK--EQ-------------QEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNI 122 (226)
Q Consensus 60 ~nV~I~n~~~~~~--~gi~iGS~g~--~~-------------~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI 122 (226)
-|+.++++..-.. +|+.+|+... .+ ...-=.|=.++|+..+++ .|+.+... | .+++|+||
T Consensus 264 YnLqF~d~~~i~~~~DG~Dl~aDtg~~~~~dR~~D~~laqYp~~qLPtnHiidNi~~~~~-lGVG~~~D-G-~~~yvsni 340 (549)
T PF09251_consen 264 YNLQFRDSVTISPVWDGFDLGADTGMGPETDRPGDYPLAQYPWHQLPTNHIIDNILVRGS-LGVGIGMD-G-KGGYVSNI 340 (549)
T ss_dssp BS-EEEEEEEES-SSESEEE-SS-SSSTTS--TTS--TTTS-TT------EEEEEEEES--SSESCEEE-C-CS-EEEEE
T ss_pred eeEEEeccceEEEeecceeccCCCCCCCCccCCCCcchhhCchhhCchhhhhhhhheecc-ceeeeeec-C-CCceEeeE
Confidence 3666777665443 4666665421 00 001123445666666654 24444333 3 56777777
Q ss_pred EEEeEEEe
Q 027251 123 LFQHALMN 130 (226)
Q Consensus 123 ~f~ni~~~ 130 (226)
+.+++.-+
T Consensus 341 ~~~d~~g~ 348 (549)
T PF09251_consen 341 TVQDCAGA 348 (549)
T ss_dssp EEES-SSE
T ss_pred EeecccCC
Confidence 77666544
No 75
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=89.67 E-value=11 Score=34.15 Aligned_cols=44 Identities=23% Similarity=0.226 Sum_probs=26.1
Q ss_pred CccEEEEeeEEecCC--CeeEecCCceeEEEEeeEEcCCceeEEeee
Q 027251 36 SSGVTILDSKIGTGD--DCVSVGPGATNLWIENVACGPGHGISIGSL 80 (226)
Q Consensus 36 ~~nV~I~n~~i~~~D--D~i~iksgs~nV~I~n~~~~~~~gi~iGS~ 80 (226)
=.+|++.|+.+...| -++.+-+ .+++++.+|.|.+-+|.++-+.
T Consensus 120 M~~VtF~ni~F~~~~~~~g~~f~~-~t~~~~hgC~F~gf~g~cl~~~ 165 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRDTFSGVVFHA-NTNTLFHGCSFFGFHGTCLESW 165 (386)
T ss_pred eeeeEEEEEEEecCCccceeEEEe-cceEEEEeeEEecCcceeEEEc
Confidence 356777777776554 2333333 5677777777776666666443
No 76
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=88.97 E-value=6 Score=33.64 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=77.7
Q ss_pred EEecCCccEEEEeeEEecCCC----eeEecCCceeEEEEeeEEcC--CceeEE-eeeccccCcCCEEEEEEEeeEEEccC
Q 027251 31 IHVQSSSGVTILDSKIGTGDD----CVSVGPGATNLWIENVACGP--GHGISI-GSLGKEQQEAGVQNVTVTSVTFTGTQ 103 (226)
Q Consensus 31 idi~~~~nV~I~n~~i~~~DD----~i~iksgs~nV~I~n~~~~~--~~gi~i-GS~g~~~~~~~v~nI~~~n~~~~~~~ 103 (226)
+-+....+.+|+...|.+.+. ++.+.+ + +.+|+||+|.. .+|+.+ |+. ....+.++.|++-.+....
T Consensus 91 ~tI~~~~~~~i~GvtItN~n~~~g~Gi~Ies-s-~~tI~Nntf~~~~~~GI~v~g~~----~~~~i~~~vI~GN~~~~~~ 164 (246)
T PF07602_consen 91 VTIILANNATISGVTITNPNIARGTGIWIES-S-SPTIANNTFTNNGREGIFVTGTS----ANPGINGNVISGNSIYFNK 164 (246)
T ss_pred EEEEecCCCEEEEEEEEcCCCCcceEEEEec-C-CcEEEeeEEECCccccEEEEeee----cCCcccceEeecceEEecC
Confidence 455566788888888888753 566665 3 89999999976 358777 331 1346888889999999888
Q ss_pred ceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCC-CCCCCCceEEEeEEEEeEEE
Q 027251 104 NGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGN-CPGQASGVKISDVIYQDIHG 168 (226)
Q Consensus 104 ~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~-~~~~~~~~~i~nI~~~ni~~ 168 (226)
.|+.+..... + +.+ .++|-.+++-..+|.+...- ++-+. ....+..-.|++=..-||..
T Consensus 165 ~Gi~i~~~~~---~-~~n-~I~NN~I~~N~~Gi~~~~~~-pDlG~~s~~~~g~N~~~~N~~~Dl~~ 224 (246)
T PF07602_consen 165 TGISISDNAA---P-VEN-KIENNIIENNNIGIVAIGDA-PDLGTGSEGSPGNNIFRNNGRYDLNN 224 (246)
T ss_pred cCeEEEcccC---C-ccc-eeeccEEEeCCcCeEeeccC-CccccCCCCCCCCcEEecCcceeeEe
Confidence 8999875532 3 333 33555666555577665432 21111 11112334555555555555
No 77
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=88.54 E-value=18 Score=32.36 Aligned_cols=68 Identities=19% Similarity=0.382 Sum_probs=54.0
Q ss_pred cEEEEEceecEEEEeEEEEcCCC---CCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEc
Q 027251 2 FHIVINGCNDVKVQGVKVSAAGE---SPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACG 70 (226)
Q Consensus 2 w~i~~~~~~nV~I~~i~i~~~~~---~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~ 70 (226)
+-+.+..+.++.|++.+|....+ ..-..||.++.+..++|..-.|.-+.|||-.+. |++-.|++..+.
T Consensus 121 ~Gi~l~~s~d~~i~~n~i~G~~~~r~~~rGnGI~vyNa~~a~V~~ndisy~rDgIy~~~-S~~~~~~gnr~~ 191 (408)
T COG3420 121 FGIYLHGSADVRIEGNTIQGLADLRVAERGNGIYVYNAPGALVVGNDISYGRDGIYSDT-SQHNVFKGNRFR 191 (408)
T ss_pred eEEEEeccCceEEEeeEEeeccccchhhccCceEEEcCCCcEEEcCccccccceEEEcc-cccceecccchh
Confidence 45778889999999999987432 345679999999999999999999999999887 555555555443
No 78
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies). This model represents a tandem pair of an approximately 22-amino acid (each) repeat homologous to the beta-strand repeats that stack in a right-handed parallel beta-helix in the periplasmic C-5 mannuronan epimerase, AlgA, of Pseudomonas aeruginosa. A homology domain consisting of a longer tandem array of these repeats is described in the SMART database as CASH (SM00722), and is found in many carbohydrate-binding proteins and sugar hydrolases. A single repeat is represented by SM00710. This TIGRFAMs model represents a flavor of the parallel beta-helix-forming repeat based on prokaryotic sequences only in its seed alignment, although it also finds many eukaryotic sequences.
Probab=88.51 E-value=1.1 Score=27.01 Aligned_cols=40 Identities=20% Similarity=0.295 Sum_probs=33.5
Q ss_pred EEEEceecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEec
Q 027251 4 IVINGCNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGT 48 (226)
Q Consensus 4 i~~~~~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~ 48 (226)
|.+..+.+.+|++-++.. +.|||.+..+.+-+|++..+..
T Consensus 2 I~l~~s~~~~i~~N~i~~-----~~~GI~~~~s~~n~i~~N~~~~ 41 (44)
T TIGR03804 2 IYLESSSNNTLENNTASN-----NSYGIYLTDSSNNTLSNNTASS 41 (44)
T ss_pred EEEEecCCCEEECcEEeC-----CCCEEEEEeCCCCEeECCEEEc
Confidence 577888888899999886 4579999999888888888764
No 79
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional
Probab=86.88 E-value=3.2 Score=36.17 Aligned_cols=18 Identities=11% Similarity=0.283 Sum_probs=10.5
Q ss_pred EEEEceecEEEEeEEEEc
Q 027251 4 IVINGCNDVKVQGVKVSA 21 (226)
Q Consensus 4 i~~~~~~nV~I~~i~i~~ 21 (226)
+|+++.++..|+|++-.+
T Consensus 262 vhvengkhfvirnvkakn 279 (464)
T PRK10123 262 IHVENGKHFVIRNIKAKN 279 (464)
T ss_pred EEecCCcEEEEEeeeccc
Confidence 455555666666666554
No 80
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen. E1B 55 kDa binds p53 the tumor suppressor protein converting it from a transcriptional activator which responds to damaged DNA in to an unregulated repressor of genes with a p53 binding site []. This protects the virus against p53 induced host antiviral responses and prevents apoptosis as induced by the adenovirus E1A protein []. The E1B region of adenovirus encodes two proteins E1B 55 kDa, the large t-antigen as found in this family and E1B 19 kDa IPR002924 from INTERPRO, the small t-antigen. Both of these proteins inhibit E1A induced apoptosis.
Probab=85.88 E-value=4.6 Score=36.50 Aligned_cols=84 Identities=10% Similarity=0.096 Sum_probs=56.7
Q ss_pred eecEEEEeEEEEcCCCCCCCCeEEecCCccEEEEeeEEecCCCeeEecCCceeEEEEeeEEcCCc-eeEEeeeccccCcC
Q 027251 9 CNDVKVQGVKVSAAGESPNTDGIHVQSSSGVTILDSKIGTGDDCVSVGPGATNLWIENVACGPGH-GISIGSLGKEQQEA 87 (226)
Q Consensus 9 ~~nV~I~~i~i~~~~~~~ntDGidi~~~~nV~I~n~~i~~~DD~i~iksgs~nV~I~n~~~~~~~-gi~iGS~g~~~~~~ 87 (226)
=.+|++.|+.+...+ . .-|+-+.+..++++++|.+.+-. +.+++. .....|+.|+|.+.. |+.- .
T Consensus 120 M~~VtF~ni~F~~~~-~--~~g~~f~~~t~~~~hgC~F~gf~-g~cl~~-~~~~~VrGC~F~~C~~gi~~---------~ 185 (386)
T PF01696_consen 120 MEGVTFVNIRFEGRD-T--FSGVVFHANTNTLFHGCSFFGFH-GTCLES-WAGGEVRGCTFYGCWKGIVS---------R 185 (386)
T ss_pred eeeeEEEEEEEecCC-c--cceeEEEecceEEEEeeEEecCc-ceeEEE-cCCcEEeeeEEEEEEEEeec---------C
Confidence 357788888887743 1 23677788899999999998753 444554 347889999998654 5532 2
Q ss_pred CEEEEEEEeeEEEccCceE
Q 027251 88 GVQNVTVTSVTFTGTQNGV 106 (226)
Q Consensus 88 ~v~nI~~~n~~~~~~~~gi 106 (226)
+...+.|++|.|....-|+
T Consensus 186 ~~~~lsVk~C~FekC~igi 204 (386)
T PF01696_consen 186 GKSKLSVKKCVFEKCVIGI 204 (386)
T ss_pred CcceEEeeheeeeheEEEE
Confidence 3567777888876654344
No 81
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).
Probab=84.96 E-value=23 Score=30.12 Aligned_cols=68 Identities=21% Similarity=0.197 Sum_probs=40.0
Q ss_pred eEEEEeeEEcCCceeEEeeeccccCcCCEEEEEEEeeEEEcc-CceEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEE
Q 027251 61 NLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTGT-QNGVRIKSWGRTSGGFARNILFQHALMNNVDNPIIID 139 (226)
Q Consensus 61 nV~I~n~~~~~~~gi~iGS~g~~~~~~~v~nI~~~n~~~~~~-~~gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~ 139 (226)
-++|+|--...+.||-|.|. +.+|+|++|.+. ..|+.+.... ....+.+++++.-.+.+...+|.+.
T Consensus 103 GvtItN~n~~~g~Gi~Iess----------~~tI~Nntf~~~~~~GI~v~g~~--~~~~i~~~vI~GN~~~~~~~Gi~i~ 170 (246)
T PF07602_consen 103 GVTITNPNIARGTGIWIESS----------SPTIANNTFTNNGREGIFVTGTS--ANPGINGNVISGNSIYFNKTGISIS 170 (246)
T ss_pred EEEEEcCCCCcceEEEEecC----------CcEEEeeEEECCccccEEEEeee--cCCcccceEeecceEEecCcCeEEE
Confidence 34444442222336777552 445556666552 4577774331 1356777888888888777788776
Q ss_pred e
Q 027251 140 Q 140 (226)
Q Consensus 140 ~ 140 (226)
.
T Consensus 171 ~ 171 (246)
T PF07602_consen 171 D 171 (246)
T ss_pred c
Confidence 5
No 82
>PLN02201 probable pectinesterase/pectinesterase inhibitor
Probab=74.22 E-value=65 Score=30.51 Aligned_cols=37 Identities=5% Similarity=-0.160 Sum_probs=18.7
Q ss_pred eEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 160 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 160 nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
.+.|.|.++++... ...+ .|.|=.+-..+.|-+-.+.
T Consensus 397 Gfvf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvv~~~t~l~ 440 (520)
T PLN02201 397 GFSIQFSNISADTDLLPYLNTTATY-LGRPWKLYSRTVFMQNYMS 440 (520)
T ss_pred EEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEecCcC
Confidence 45666666554311 1233 3545455556666666653
No 83
>PRK10531 acyl-CoA thioesterase; Provisional
Probab=73.79 E-value=73 Score=29.33 Aligned_cols=43 Identities=12% Similarity=0.198 Sum_probs=24.5
Q ss_pred EEEEEEeeEEEccCceEEEEEeCCCCC---ceEEeEEEEeEEEeCC
Q 027251 90 QNVTVTSVTFTGTQNGVRIKSWGRTSG---GFARNILFQHALMNNV 132 (226)
Q Consensus 90 ~nI~~~n~~~~~~~~gi~iks~~g~~~---g~v~nI~f~ni~~~~~ 132 (226)
..+.|.||.|.+.+.-|.....+...+ .....-+|+|+.|++.
T Consensus 238 Dra~fy~C~flG~QDTLy~~~~~~~~~~~~~~~gRqYf~~CyIeG~ 283 (422)
T PRK10531 238 DKVQIENVNILGRQDTFFVTNSGVQNRLETDRQPRTYVKNSYIEGD 283 (422)
T ss_pred CcEEEEeeEEecccceeeeccccccccccccccccEEEEeCEEeec
Confidence 466788888887766666543221000 1233467777777764
No 84
>PLN02432 putative pectinesterase
Probab=72.88 E-value=58 Score=28.43 Aligned_cols=35 Identities=9% Similarity=-0.035 Sum_probs=20.2
Q ss_pred eEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEE
Q 027251 160 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 160 nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
...|.|-++++.+ ..+ .|.|=.|-..+.|.|-.+.
T Consensus 194 Gfvf~~c~itg~g--~~y-LGRpW~~~srvvf~~t~l~ 228 (293)
T PLN02432 194 GFTFLGCKLTGAG--TTY-LGRPWGPYSRVVFALSYMS 228 (293)
T ss_pred eEEEEeeEEcccc--hhh-ccCCCCCccEEEEEecccC
Confidence 4667777766532 222 3555555666777776654
No 85
>PLN02480 Probable pectinesterase
Probab=72.07 E-value=66 Score=28.76 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=21.0
Q ss_pred eEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEE
Q 027251 160 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 160 nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
...|.|.++++.+ ..+| |.|=.+-..+.|.+-.+.
T Consensus 241 GfvF~~C~i~g~g--~~yL-GRPW~~ya~vVf~~t~l~ 275 (343)
T PLN02480 241 GFVFIKGKVYGIG--EVYL-GRAKGAYSRVIFAKTYLS 275 (343)
T ss_pred EEEEECCEEcccC--ceee-ecCCCCcceEEEEecccC
Confidence 4567777766542 3333 555556666777777663
No 86
>PLN02698 Probable pectinesterase/pectinesterase inhibitor
Probab=71.30 E-value=49 Score=31.15 Aligned_cols=38 Identities=3% Similarity=-0.106 Sum_probs=20.0
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.+.++++... ...+ .|.|=.+-..+.|-+-.+.
T Consensus 373 ~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~vf~~s~l~ 417 (497)
T PLN02698 373 TGFSLQSCRIRTSSDFSPVKHSYSSY-LGRPWKKYSRAIVMESYID 417 (497)
T ss_pred ceEEEEeeEEecCCccccccccccee-ccCCCCCCceEEEEecccC
Confidence 356677776665421 0122 3545445556667666653
No 87
>PLN02916 pectinesterase family protein
Probab=70.68 E-value=70 Score=30.18 Aligned_cols=38 Identities=8% Similarity=-0.077 Sum_probs=20.5
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|.++++... .+.+ .|.|=.|-..+.|-+-.+.
T Consensus 380 tGfvf~~C~it~~~~~~~~~g~~~~y-LGRPW~~ysrvVf~~t~~~ 424 (502)
T PLN02916 380 TGISIQHSRVRASPEFEAVKGRFKSF-LGRPWKKYSRTVFLKTDLD 424 (502)
T ss_pred cEEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEecccC
Confidence 356677766665321 1233 3555455556667666654
No 88
>PLN02301 pectinesterase/pectinesterase inhibitor
Probab=70.62 E-value=56 Score=31.18 Aligned_cols=36 Identities=3% Similarity=-0.078 Sum_probs=18.1
Q ss_pred eEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEE
Q 027251 160 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 160 nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
.+.|.|-++++... .+.+ .|.|=.+-..+.|-+-.+
T Consensus 427 G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~V~~~s~l 469 (548)
T PLN02301 427 GISIQKCDIIASSDLEPVKGSFKTY-LGRPWKEYSRTVVMQSYI 469 (548)
T ss_pred EEEEEeeEEecCcccccccccccee-eecCCCCCceEEEEeccc
Confidence 56666666655321 1223 344444455566666554
No 89
>PLN02713 Probable pectinesterase/pectinesterase inhibitor
Probab=69.81 E-value=59 Score=31.15 Aligned_cols=38 Identities=8% Similarity=-0.079 Sum_probs=18.6
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|.++++... .+.+ .|.|=.+-..+.|-+-.+.
T Consensus 443 ~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysr~V~~~s~~~ 487 (566)
T PLN02713 443 TGTSIQNCTIKAADDLASSNYTVKTY-LGRPWKEYSRTVVMQSYID 487 (566)
T ss_pred CEEEEEcCEEecCCccccccccccee-eecCCCCcceEEEEecccC
Confidence 356666666654321 1223 3444444455666665553
No 90
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=66.54 E-value=51 Score=32.20 Aligned_cols=38 Identities=5% Similarity=-0.045 Sum_probs=21.1
Q ss_pred EeEEEEeEEEeccC-------ceeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSAT-------EVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~-------~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|.++++.. ....+| |.|=.+-..+.|-+-.+.
T Consensus 440 tGfvf~~C~i~~~~~~~~~~~~~~~yL-GRPW~~ysrvVf~~t~l~ 484 (670)
T PLN02217 440 TGFVLQGCTIVGEPDYLAVKETSKAYL-GRPWKEYSRTIIMNTFIP 484 (670)
T ss_pred ceEEEEeeEEecCccccccccccceee-ccCCCCCceEEEEecccC
Confidence 35677777766542 112343 555455566677666653
No 91
>PLN02708 Probable pectinesterase/pectinesterase inhibitor
Probab=66.21 E-value=76 Score=30.31 Aligned_cols=18 Identities=6% Similarity=-0.091 Sum_probs=9.3
Q ss_pred ccCCCCeecEEEEeEEEE
Q 027251 180 CSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 180 ~~~~~~~~ni~f~nv~i~ 197 (226)
|.|=.+-..+.|-+-.+.
T Consensus 468 GRPW~~ysr~V~~~s~l~ 485 (553)
T PLN02708 468 GRPWKEYSRTVFIGCNLE 485 (553)
T ss_pred ecCCCCcceEEEEecccC
Confidence 444444555566555553
No 92
>PLN02484 probable pectinesterase/pectinesterase inhibitor
Probab=65.46 E-value=68 Score=30.89 Aligned_cols=38 Identities=3% Similarity=-0.184 Sum_probs=19.3
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|.++++... .+.+ .|.|=.+-..+.|-+-.+.
T Consensus 463 ~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysrvV~~~s~i~ 507 (587)
T PLN02484 463 TGISIHACRILAASDLAASKGSFPTY-LGRPWKLYSRTVYMMSYMG 507 (587)
T ss_pred cEEEEEeeEEecCCccccccCcccee-ccCCCCCCceEEEEecccC
Confidence 356677766654321 1223 3544444555666666553
No 93
>PLN02170 probable pectinesterase/pectinesterase inhibitor
Probab=65.19 E-value=1.1e+02 Score=29.09 Aligned_cols=35 Identities=3% Similarity=-0.105 Sum_probs=18.9
Q ss_pred EeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEE
Q 027251 159 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
..+.|.|.++++.. ..+ .|.|=.|-..+.|-+-.+
T Consensus 415 ~Gfvf~~C~it~~~--~~y-LGRPW~~ysrvVf~~t~l 449 (529)
T PLN02170 415 TGISIHNCRITAES--MTY-LGRPWKEYSRTVVMQSFI 449 (529)
T ss_pred ceEEEEeeEEecCC--cee-eeCCCCCCceEEEEeccc
Confidence 35677777776643 233 354444445566665554
No 94
>PLN02313 Pectinesterase/pectinesterase inhibitor
Probab=64.65 E-value=70 Score=30.77 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=7.0
Q ss_pred eEEEEeEEEecc
Q 027251 160 DVIYQDIHGTSA 171 (226)
Q Consensus 160 nI~~~ni~~~~~ 171 (226)
.+.|.|.++++.
T Consensus 466 G~v~~~c~i~~~ 477 (587)
T PLN02313 466 GIVIQNCRIGGT 477 (587)
T ss_pred eEEEEecEEecC
Confidence 566666665543
No 95
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3.1.1.11 from EC (pectin methylesterase) catalyses the de-esterification of pectin into pectate and methanol. Pectin is one of the main components of the plant cell wall. In plants, pectinesterase plays an important role in cell wall metabolism during fruit ripening. In plant bacterial pathogens such as Erwinia carotovora and in fungal pathogens such as Aspergillus niger, pectinesterase is involved in maceration and soft-rotting of plant tissue. Plant pectinesterases are regulated by pectinesterase inhibitors, which are ineffective against microbial enzymes []. Prokaryotic and eukaryotic pectinesterases share a few regions of sequence similarity. The crystal structure of pectinesterase from Erwinia chrysanthemi revealed a beta-helix structure similar to that found in pectinolytic enzymes, though it is different from most structures of esterases []. The putative catalytic residues are in a similar location to those of the active site and substrate-binding cleft of pectate lyase.; GO: 0030599 pectinesterase activity, 0042545 cell wall modification, 0005618 cell wall; PDB: 1QJV_B 1XG2_A 1GQ8_A 2NTQ_A 2NTP_A 2NT9_A 2NT6_B 2NSP_B 2NTB_A 2NST_A ....
Probab=64.47 E-value=46 Score=29.03 Aligned_cols=17 Identities=18% Similarity=0.278 Sum_probs=8.4
Q ss_pred EEEEEeeEEEccCceEE
Q 027251 91 NVTVTSVTFTGTQNGVR 107 (226)
Q Consensus 91 nI~~~n~~~~~~~~gi~ 107 (226)
...|.||.|.+.+.-|.
T Consensus 116 ~~~f~~c~~~g~QDTL~ 132 (298)
T PF01095_consen 116 RAAFYNCRFLGYQDTLY 132 (298)
T ss_dssp SEEEEEEEEE-STT-EE
T ss_pred cEEEEEeEEccccceee
Confidence 34666666666554444
No 96
>PLN02468 putative pectinesterase/pectinesterase inhibitor
Probab=64.04 E-value=81 Score=30.22 Aligned_cols=37 Identities=5% Similarity=-0.085 Sum_probs=19.1
Q ss_pred EeEEEEeEEEeccCc---eeEEEeccCCCCeecEEEEeEEE
Q 027251 159 SDVIYQDIHGTSATE---VGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~---~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
..+.|.|-+++.... ...+ .|.|=.+-....|-+-.+
T Consensus 448 ~G~vf~~c~i~~~~~~~~~~~y-LGRPW~~~sr~v~~~s~~ 487 (565)
T PLN02468 448 TGISIQNCTILPLGDLTSVKTF-LGRPWKNYSTTVIMHSMM 487 (565)
T ss_pred ceEEEEccEEecCCCcccccee-eecCCCCCceEEEEeccc
Confidence 356777777665421 1222 354444455566666554
No 97
>PLN02416 probable pectinesterase/pectinesterase inhibitor
Probab=63.90 E-value=71 Score=30.41 Aligned_cols=11 Identities=9% Similarity=-0.009 Sum_probs=6.4
Q ss_pred eEEEEeEEEec
Q 027251 160 DVIYQDIHGTS 170 (226)
Q Consensus 160 nI~~~ni~~~~ 170 (226)
.+.|.|-++++
T Consensus 421 G~vf~~c~i~~ 431 (541)
T PLN02416 421 GISIQNCSILA 431 (541)
T ss_pred EEEEEeeEEec
Confidence 55666666554
No 98
>PLN02197 pectinesterase
Probab=63.55 E-value=74 Score=30.63 Aligned_cols=38 Identities=5% Similarity=-0.036 Sum_probs=19.8
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|-++++... .+.+ .|.|=.+-..+.|-+-.+.
T Consensus 468 tG~vf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvV~~~s~~~ 512 (588)
T PLN02197 468 IGIVLQNCRIVPDKKLTAERLTVASY-LGRPWKKFSTTVIISTEIG 512 (588)
T ss_pred cEEEEEccEEecCCcccccccccccc-cCCCCCCCceEEEEecccC
Confidence 356677766665321 1223 3545455556666666553
No 99
>PLN02745 Putative pectinesterase/pectinesterase inhibitor
Probab=63.33 E-value=1e+02 Score=29.70 Aligned_cols=38 Identities=5% Similarity=0.004 Sum_probs=18.8
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|.++++... ...+ .|.|=.+-..+.|-+-.+.
T Consensus 475 ~Gfvf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysrvv~~~s~l~ 519 (596)
T PLN02745 475 TGIVLQNCRIAPDEDLKPVKTEVKSY-LGRPWKEFSRTIVMESTIE 519 (596)
T ss_pred ceEEEEeeEEecCcccccccccccee-ccCCCCCCccEEEEecccC
Confidence 356666666655321 0122 3544445555666665553
No 100
>PLN02933 Probable pectinesterase/pectinesterase inhibitor
Probab=63.25 E-value=1.3e+02 Score=28.70 Aligned_cols=37 Identities=3% Similarity=-0.180 Sum_probs=20.2
Q ss_pred eEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 160 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 160 nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
.+.|.|.++++... .+.+ .|.|=.+-..+.|.+-.+.
T Consensus 409 Gfvf~~C~it~~~~~~~~~~~~~~y-LGRPW~~ysrvVf~~s~l~ 452 (530)
T PLN02933 409 GISIISSRILAAPDLIPVKENFKAY-LGRPWRKYSRTVIIKSFID 452 (530)
T ss_pred eEEEEeeEEecCCcccccccccceE-eccCCCCCceEEEEecccC
Confidence 56677766665321 1233 3555455556777766654
No 101
>PLN02488 probable pectinesterase/pectinesterase inhibitor
Probab=62.04 E-value=1.3e+02 Score=28.55 Aligned_cols=36 Identities=8% Similarity=-0.011 Sum_probs=18.1
Q ss_pred eEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEE
Q 027251 160 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 160 nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
.+.|.|.++++... .+.+ .|.|=.+-..+.|-+-.+
T Consensus 388 Gfvf~~C~it~~~~~~~~~~~~~~Y-LGRPW~~ySrvVf~~s~i 430 (509)
T PLN02488 388 GFSIQKCNITASSDLDPVKATVKTY-LGRPWRKYSTVAVLQSFI 430 (509)
T ss_pred EEEEEeeEEecCCccccccccccee-ecCCCCCCccEEEEeccC
Confidence 46677666665421 1223 354444455555655554
No 102
>PLN02314 pectinesterase
Probab=61.95 E-value=95 Score=29.90 Aligned_cols=38 Identities=3% Similarity=-0.164 Sum_probs=19.1
Q ss_pred EeEEEEeEEEeccCc--eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE--VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~--~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|.++++... .+.+ .|.|=.+-..+.|-+-.+.
T Consensus 468 ~G~vf~~c~i~~~~~~~~~~y-LGRpW~~ysr~v~~~s~i~ 507 (586)
T PLN02314 468 TGISIQRCTISAFGNLTAPTY-LGRPWKDFSTTVIMQSYIG 507 (586)
T ss_pred CEEEEEeeEEecCCccccccc-ccCCCCCCceEEEEecccC
Confidence 356777777665431 1233 3444334444556655543
No 103
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional
Probab=61.78 E-value=1e+02 Score=29.41 Aligned_cols=11 Identities=0% Similarity=-0.115 Sum_probs=6.4
Q ss_pred eEEEEeEEEec
Q 027251 160 DVIYQDIHGTS 170 (226)
Q Consensus 160 nI~~~ni~~~~ 170 (226)
.+.|.|-++++
T Consensus 417 G~~~~~c~i~~ 427 (538)
T PLN03043 417 GISIINCTIEA 427 (538)
T ss_pred eEEEEecEEec
Confidence 45666666554
No 104
>PLN02990 Probable pectinesterase/pectinesterase inhibitor
Probab=60.70 E-value=1.1e+02 Score=29.36 Aligned_cols=36 Identities=8% Similarity=0.004 Sum_probs=18.5
Q ss_pred eEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEE
Q 027251 160 DVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 160 nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
.+.|.|.++++... .+.+ .|.|=.+-..+.|-+-.+
T Consensus 451 G~vf~~C~it~~~~~~~~~~~~~~y-LGRpW~~ysrvV~~~s~i 493 (572)
T PLN02990 451 GLVLQNCHITGEPAYIPVKSINKAY-LGRPWKEFSRTIIMGTTI 493 (572)
T ss_pred eEEEEeeEEecCccccccccccceE-eecCCCCCceEEEEeccc
Confidence 46677666665421 1233 344444455566666555
No 105
>PLN02995 Probable pectinesterase/pectinesterase inhibitor
Probab=60.04 E-value=94 Score=29.60 Aligned_cols=38 Identities=8% Similarity=-0.090 Sum_probs=20.8
Q ss_pred EeEEEEeEEEeccCc-------eeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATE-------VGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~-------~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|-++++... ...+ .|.|=.+-..+.|-+-.+.
T Consensus 415 ~G~vf~~c~i~~~~~~~~~~~~~~~y-LGRPW~~ysrvv~~~t~~~ 459 (539)
T PLN02995 415 TGISIHNSRILPAPDLKPVVRTVKTY-MGRPWMKFSRTVVLQTYLD 459 (539)
T ss_pred ceEEEEeeEEecCCccccccccccee-ccCCCCCCcceEEEecccc
Confidence 467777777665421 1122 3555455556666666663
No 106
>smart00710 PbH1 Parallel beta-helix repeats. The tertiary structures of pectate lyases and rhamnogalacturonase A show a stack of parallel beta strands that are coiled into a large helix. Each coil of the helix represents a structural repeat that, in some homologues, can be recognised from sequence information alone. Conservation of asparagines might be connected with asparagine-ladders that contribute to the stability of the fold. Proteins containing these repeats most often are enzymes with polysaccharide substrates.
Probab=59.88 E-value=14 Score=18.41 Aligned_cols=10 Identities=40% Similarity=0.461 Sum_probs=4.1
Q ss_pred EEEEeeEEec
Q 027251 39 VTILDSKIGT 48 (226)
Q Consensus 39 V~I~n~~i~~ 48 (226)
++|+++.|..
T Consensus 4 ~~i~~n~i~~ 13 (26)
T smart00710 4 VTIENNTIRN 13 (26)
T ss_pred EEEECCEEEe
Confidence 3444444443
No 107
>PLN02682 pectinesterase family protein
Probab=59.46 E-value=1.2e+02 Score=27.36 Aligned_cols=36 Identities=3% Similarity=-0.045 Sum_probs=21.6
Q ss_pred EeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
....|.|-++++.+ ..+ .|.|=.|-..+.|.|-.+.
T Consensus 268 ~GfvF~~C~itg~g--~~y-LGRpW~~yarvVf~~t~m~ 303 (369)
T PLN02682 268 TGFSFVNCKVTGSG--ALY-LGRAWGTFSRVVFAYTYMD 303 (369)
T ss_pred ceEEEEeeEecCCC--ceE-eecCCCCcceEEEEeccCC
Confidence 35667777776642 233 3555556666777777664
No 108
>PLN02634 probable pectinesterase
Probab=58.31 E-value=1.4e+02 Score=26.98 Aligned_cols=34 Identities=6% Similarity=-0.049 Sum_probs=19.3
Q ss_pred eEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEE
Q 027251 160 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 160 nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
...|.|.++++.+ .++ .|.|=.+-..+.|.+-.+
T Consensus 255 GfvF~~C~vtg~g--~~y-LGRPW~~yarvVf~~t~l 288 (359)
T PLN02634 255 GFAFVGCRVTGTG--PLY-VGRAMGQYSRIVYAYTYF 288 (359)
T ss_pred EEEEEcCEEcCCc--ceE-ecCCCCCcceEEEEeccc
Confidence 5577777776542 333 354444555566666654
No 109
>PLN02773 pectinesterase
Probab=58.20 E-value=1.3e+02 Score=26.52 Aligned_cols=12 Identities=17% Similarity=0.340 Sum_probs=8.9
Q ss_pred EEEEeEEEeCCC
Q 027251 122 ILFQHALMNNVD 133 (226)
Q Consensus 122 I~f~ni~~~~~~ 133 (226)
..|++|++....
T Consensus 173 a~Fe~c~i~s~~ 184 (317)
T PLN02773 173 ALLEHCHIHCKS 184 (317)
T ss_pred EEEEeeEEEEcc
Confidence 588888887654
No 110
>PLN02506 putative pectinesterase/pectinesterase inhibitor
Probab=57.63 E-value=1.1e+02 Score=29.09 Aligned_cols=36 Identities=8% Similarity=-0.045 Sum_probs=19.5
Q ss_pred EeEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEE
Q 027251 159 SDVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 159 ~nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
..+.|.|-++++.. +.+| |.|=.+-..+.|-+-.+.
T Consensus 422 ~G~vf~~c~i~~~~--~~yL-GRPW~~~sr~v~~~t~l~ 457 (537)
T PLN02506 422 TGFSIQDSYVLATQ--PTYL-GRPWKQYSRTVFMNTYMS 457 (537)
T ss_pred cEEEEEcCEEccCC--ceEE-ecCCCCCceEEEEecCCC
Confidence 35667777766542 3443 544444455666665543
No 111
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=48.57 E-value=1.8e+02 Score=26.79 Aligned_cols=64 Identities=13% Similarity=0.142 Sum_probs=27.6
Q ss_pred eEEEEEeCCCCCceEEeEEEEeEEEeCCCccEEEEeeeCCCCCCCCCCCCceEEEeEEEEeEEEeccCceeEEE
Q 027251 105 GVRIKSWGRTSGGFARNILFQHALMNNVDNPIIIDQNYCPDNGNCPGQASGVKISDVIYQDIHGTSATEVGVKL 178 (226)
Q Consensus 105 gi~iks~~g~~~g~v~nI~f~ni~~~~~~~~i~i~~~y~~~~~~~~~~~~~~~i~nI~~~ni~~~~~~~~~~~i 178 (226)
||||- + .+-.|.|=+|++++-...+.++.+..-+... | ...-.+++|+++.+=+.-... .++.+
T Consensus 265 GIRIi---~-~~H~I~nNY~~gl~g~~~~~~~~v~ng~p~s----~-ln~y~qv~nv~I~~NT~In~~-~~i~~ 328 (425)
T PF14592_consen 265 GIRII---G-EGHTIYNNYFEGLTGTRFRGALAVMNGVPNS----P-LNRYDQVKNVLIANNTFINCK-SPIHF 328 (425)
T ss_dssp -EEE----S-BS-EEES-EEEESSB-TTTTSEE-EEE--BS----T-TSTT---BSEEEES-EEES-S-EEEES
T ss_pred ceEEe---c-CCcEEEcceeeccccceeecceeeccCCCCC----C-cccccccceeEEecceEEccC-CceEE
Confidence 56652 2 3457778888888777766777643322211 1 112345666666655544332 24444
No 112
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A.
Probab=40.71 E-value=1.2e+02 Score=28.05 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=16.6
Q ss_pred CCceEEeEEEEeEEEeCCCccEEEEe
Q 027251 115 SGGFARNILFQHALMNNVDNPIIIDQ 140 (226)
Q Consensus 115 ~~g~v~nI~f~ni~~~~~~~~i~i~~ 140 (226)
+...|.|+++.+-++-+...+|.+..
T Consensus 305 ~y~qv~nv~I~~NT~In~~~~i~~g~ 330 (425)
T PF14592_consen 305 RYDQVKNVLIANNTFINCKSPIHFGA 330 (425)
T ss_dssp TT---BSEEEES-EEES-SEEEESST
T ss_pred cccccceeEEecceEEccCCceEEcc
Confidence 45689999999999999887776543
No 113
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism]
Probab=40.49 E-value=1.1e+02 Score=27.41 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=34.0
Q ss_pred CCccEEEEeeEEecCCCeeEecCC-c---------eeEEEEeeEEcCCceeEEeeeccccCcCCEEEEEEEeeEEEc
Q 027251 35 SSSGVTILDSKIGTGDDCVSVGPG-A---------TNLWIENVACGPGHGISIGSLGKEQQEAGVQNVTVTSVTFTG 101 (226)
Q Consensus 35 ~~~nV~I~n~~i~~~DD~i~iksg-s---------~nV~I~n~~~~~~~gi~iGS~g~~~~~~~v~nI~~~n~~~~~ 101 (226)
..+.+.++||.+....|-+-.+.. . -.-+++||++.+.-.+-+||. -..|.+|.+.-
T Consensus 219 dgDka~frnv~llg~QdTlFv~~~~~~~~~~tn~~~R~yftNsyI~GdvDfIfGsg----------taVFd~c~i~~ 285 (405)
T COG4677 219 DGDKAIFRNVNLLGNQDTLFVGNSGVQNRLETNRQPRTYFTNSYIEGDVDFIFGSG----------TAVFDNCEIQV 285 (405)
T ss_pred cCCceeeeeeeEeeccceEEecCCCCccccccCcchhhheecceecccceEEeccc----------eEEeccceEEE
Confidence 346777777777776666666542 1 133567777764446666663 13566666654
No 114
>PLN02304 probable pectinesterase
Probab=37.34 E-value=3.2e+02 Score=24.84 Aligned_cols=34 Identities=6% Similarity=0.073 Sum_probs=17.9
Q ss_pred eEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEE
Q 027251 160 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKL 196 (226)
Q Consensus 160 nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i 196 (226)
...|.|.++++.+ .++| |.|=.|-..+.|.+-.+
T Consensus 276 GfvF~~C~itg~g--~vyL-GRPW~pysrvVf~~t~m 309 (379)
T PLN02304 276 GFSFVNCTIGGTG--RIWL-GRAWRPYSRVVFAYTSM 309 (379)
T ss_pred eEEEECCEEccCc--ceee-cCCCCCcceEEEEeccc
Confidence 4556666665532 2333 44444555566666554
No 115
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=35.75 E-value=2.4e+02 Score=23.01 Aligned_cols=14 Identities=21% Similarity=0.387 Sum_probs=7.1
Q ss_pred EEEEEEEeeEEEcc
Q 027251 89 VQNVTVTSVTFTGT 102 (226)
Q Consensus 89 v~nI~~~n~~~~~~ 102 (226)
..|-++||-+|.+.
T Consensus 63 F~ntlIENNVfDG~ 76 (198)
T PF08480_consen 63 FYNTLIENNVFDGV 76 (198)
T ss_pred ccccEEEeeeeccc
Confidence 44555555555443
No 116
>PLN02497 probable pectinesterase
Probab=34.87 E-value=3.3e+02 Score=24.25 Aligned_cols=35 Identities=3% Similarity=-0.023 Sum_probs=20.3
Q ss_pred eEEEEeEEEeccCceeEEEeccCCCCeecEEEEeEEEE
Q 027251 160 DVIYQDIHGTSATEVGVKLDCSSKNPCTGISLEDVKLI 197 (226)
Q Consensus 160 nI~~~ni~~~~~~~~~~~i~~~~~~~~~ni~f~nv~i~ 197 (226)
...|.|-++++.+ ..+ .|.|=.|-..+.|.+-.+.
T Consensus 228 GfvF~~C~itg~g--~~y-LGRPW~~ysrvvf~~t~m~ 262 (331)
T PLN02497 228 GFVFKNCLVYGTG--SAY-LGRPWRGYSRVLFYNSNLT 262 (331)
T ss_pred eEEEEccEEccCC--CEE-EeCCCCCCceEEEEecccC
Confidence 4566676666542 333 3555455566777776653
No 117
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism]
Probab=32.00 E-value=2.8e+02 Score=25.00 Aligned_cols=12 Identities=8% Similarity=0.144 Sum_probs=6.0
Q ss_pred ceeEEEEeeEEc
Q 027251 59 ATNLWIENVACG 70 (226)
Q Consensus 59 s~nV~I~n~~~~ 70 (226)
++.++|+|..-+
T Consensus 224 s~~l~V~~nrS~ 235 (408)
T COG3420 224 SDRLKVSDNRSS 235 (408)
T ss_pred eccEEEEcCccc
Confidence 455555555444
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=22.56 E-value=1.9e+02 Score=24.61 Aligned_cols=49 Identities=18% Similarity=0.289 Sum_probs=30.5
Q ss_pred eEEcCCce--eEEeeeccccCcCCEEEEEEEeeEEEccCceEEEEEeCCCCCceEEeEEE
Q 027251 67 VACGPGHG--ISIGSLGKEQQEAGVQNVTVTSVTFTGTQNGVRIKSWGRTSGGFARNILF 124 (226)
Q Consensus 67 ~~~~~~~g--i~iGS~g~~~~~~~v~nI~~~n~~~~~~~~gi~iks~~g~~~g~v~nI~f 124 (226)
|++|+-.| |+-||. ...++-+.|.+=++.-++.-+.+.... |.||+.-|
T Consensus 94 c~~ws~~geliatgsn-----dk~ik~l~fn~dt~~~~g~dle~nmhd----gtirdl~f 144 (350)
T KOG0641|consen 94 CTAWSPCGELIATGSN-----DKTIKVLPFNADTCNATGHDLEFNMHD----GTIRDLAF 144 (350)
T ss_pred EEEecCccCeEEecCC-----CceEEEEecccccccccCcceeeeecC----CceeeeEE
Confidence 67777666 777775 345777777776666666666665442 44555544
No 119
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina. Disaggregatases cause aggregates to separate into single cells [] and contain parallel beta-helix repeats. Also see IPR010671 from INTERPRO.
Probab=21.13 E-value=4.7e+02 Score=21.43 Aligned_cols=12 Identities=33% Similarity=0.194 Sum_probs=5.9
Q ss_pred eeEEEEeeEEcC
Q 027251 60 TNLWIENVACGP 71 (226)
Q Consensus 60 ~nV~I~n~~~~~ 71 (226)
.|.+|+|.+|.+
T Consensus 64 ~ntlIENNVfDG 75 (198)
T PF08480_consen 64 YNTLIENNVFDG 75 (198)
T ss_pred cccEEEeeeecc
Confidence 444555555544
No 120
>PF05342 Peptidase_M26_N: M26 IgA1-specific Metallo-endopeptidase N-terminal region; InterPro: IPR008006 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases corresponds to MEROPS peptidase family M26 (clan MA(E)). The active site residues for members of this family and family M4 occur in the motif HEXXH. The type example is IgA1-specific metalloendopeptidase from Streptococcus sanguis (Q59986 from SWISSPROT).; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0016021 integral to membrane
Probab=21.07 E-value=63 Score=27.53 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=12.2
Q ss_pred CceEEEeEEEEeEEEecc
Q 027251 154 SGVKISDVIYQDIHGTSA 171 (226)
Q Consensus 154 ~~~~i~nI~~~ni~~~~~ 171 (226)
.++.|+||.|+|+.+...
T Consensus 210 ~gatI~nL~l~nv~I~~~ 227 (250)
T PF05342_consen 210 NGATIKNLNLKNVNINGP 227 (250)
T ss_pred cCCEEEcceeEEeeeecc
Confidence 456777777777776654
Done!