BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027252
MSLNALVRLPLSSSRTHEDVLVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQF
QRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIYK
DTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVENGNLRAALSTSDVIELP
TPDKLKTVLDKVKDFFGDAKESFGKITALNSTSSEESEENSKEKAK

High Scoring Gene Products

Symbol, full name Information P value
AT1G67700 protein from Arabidopsis thaliana 1.3e-75

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027252
        (226 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2008615 - symbol:AT1G67700 "AT1G67700" species...   762  1.3e-75   1


>TAIR|locus:2008615 [details] [associations]
            symbol:AT1G67700 "AT1G67700" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009941 "chloroplast
            envelope" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
            [GO:0009534 "chloroplast thylakoid" evidence=IDA] [GO:0006364 "rRNA
            processing" evidence=RCA] [GO:0009902 "chloroplast relocation"
            evidence=RCA] [GO:0010027 "thylakoid membrane organization"
            evidence=RCA] [GO:0010207 "photosystem II assembly" evidence=RCA]
            [GO:0015979 "photosynthesis" evidence=RCA] [GO:0015995 "chlorophyll
            biosynthetic process" evidence=RCA] [GO:0016117 "carotenoid
            biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
            diphosphate biosynthetic process, mevalonate-independent pathway"
            evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
            evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
            [GO:0042793 "transcription from plastid promoter" evidence=RCA]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009941 GO:GO:0009534
            EMBL:AY085943 EMBL:AK316962 IPI:IPI00524952 RefSeq:NP_564903.3
            UniGene:At.23345 STRING:Q8LDL0 PaxDb:Q8LDL0 PRIDE:Q8LDL0
            EnsemblPlants:AT1G67700.2 GeneID:843095 KEGG:ath:AT1G67700
            TAIR:At1g67700 eggNOG:NOG272927 HOGENOM:HOG000029183
            InParanoid:Q8LDL0 OMA:TATEFRY PhylomeDB:Q8LDL0
            ProtClustDB:CLSN2680587 Genevestigator:Q8LDL0 Uniprot:Q8LDL0
        Length = 231

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 152/210 (72%), Positives = 174/210 (82%)

Query:     1 MSLNALVRLPLSSSRTHEDV-LVKHSPFSSRTTQKPNGRERQRRVLVVQAKGKRGLQARQ 59
             MSLNAL RLPL ++   E+V L +HS FSSRT  +    +++R V VV+AKGK+G+ ARQ
Sbjct:     5 MSLNALTRLPLKNTGRFEEVGLARHSLFSSRTACRETAVQQRRMVFVVEAKGKKGMAARQ 64

Query:    60 FQRPPPPSLPKIEDDGNPRFVIFIRMANVYLWYPLSIITGGTTAKIMVAAKDNFLGKYIY 119
             +QR PPP +PKIEDDGNPRFVIFIRMANVYLWYPLSII GGTTAKIMVAAKDN LGKYIY
Sbjct:    65 YQRTPPP-MPKIEDDGNPRFVIFIRMANVYLWYPLSIIAGGTTAKIMVAAKDNLLGKYIY 123

Query:   120 KDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGYKLVENGNLRAALSTSDVIEL 179
             KDT+ARN+AAVIYRDEKEIQKTA KQ RVL++ATEFRYGYKLVENGN+RAALSTSDVIEL
Sbjct:   124 KDTIARNIAAVIYRDEKEIQKTAIKQHRVLRTATEFRYGYKLVENGNMRAALSTSDVIEL 183

Query:   180 PTPXXXXXXXXXXXXFFGDAKESFGKITAL 209
             PT             +FGDAKESFGK+++L
Sbjct:   184 PTQDQLKTVFDKVKDYFGDAKESFGKLSSL 213


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.135   0.386    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      226       199   0.00085  111 3  11 22  0.46    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  137 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.59u 0.10s 18.69t   Elapsed:  00:00:01
  Total cpu time:  18.59u 0.10s 18.69t   Elapsed:  00:00:01
  Start:  Fri May 10 06:57:27 2013   End:  Fri May 10 06:57:28 2013

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