BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027252
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
           Aminotransferase
          Length = 449

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 104 KIMVAAKDNFL----GKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEFRYGY 159
           +++VAA+ ++L    G+ +Y D+L+           KEIQ+   KQ   L  +  F+YG+
Sbjct: 34  RLIVAAEGSWLVDDKGRKVY-DSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYGH 92

Query: 160 KL 161
            L
Sbjct: 93  PL 94


>pdb|2RGO|A Chain A, Structure Of Alpha-Glycerophosphate Oxidase From
           Streptococcus Sp.: A Template For The Mitochondrial
           Alpha- Glycerophosphate Dehydrogenase
 pdb|2RGO|B Chain B, Structure Of Alpha-Glycerophosphate Oxidase From
           Streptococcus Sp.: A Template For The Mitochondrial
           Alpha- Glycerophosphate Dehydrogenase
          Length = 607

 Score = 26.9 bits (58), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 28  SSRTTQKPNGRERQRRV----LVVQAKGKRGLQ---ARQFQRPPPPSLPKIEDDGNPRFV 80
           SSR+T+  +G  R  +     +V    G+R +    A    +P P  LP  ED+G   F 
Sbjct: 57  SSRSTKLVHGGIRYLKTFDVEVVADTVGERAVVQGIAPHIPKPDPMLLPIYEDEGATTFN 116

Query: 81  IFIRMANVYLWYPLSIITG 99
           +F     + L+  L+ +TG
Sbjct: 117 MFSVKVAMDLYDKLANVTG 135


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.135    0.386 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,445,036
Number of Sequences: 62578
Number of extensions: 196285
Number of successful extensions: 341
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 2
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)