BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027252
         (226 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P34712|PGP1_CAEEL Multidrug resistance protein pgp-1 OS=Caenorhabditis elegans
           GN=pgp-1 PE=1 SV=2
          Length = 1321

 Score = 37.0 bits (84), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 161 LVENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFGKI 206
           ++ NG+LR +L T D   L   D LKT +  V+D+ GD  +S G+I
Sbjct: 1   MLRNGSLRQSLRTLDSFSLAPEDVLKTAIKTVEDYEGDNIDSNGEI 46


>sp|Q9Z6S7|RMUC_CHLPN DNA recombination protein RmuC homolog OS=Chlamydia pneumoniae
           GN=rmuC PE=3 SV=1
          Length = 411

 Score = 32.0 bits (71), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 57/109 (52%), Gaps = 14/109 (12%)

Query: 101 TTAKIMVAAKDNFLGKYIYKDTLARNLAAVIYRDEKEIQKTAFKQFRVLQSATEF-RYGY 159
           + A ++++    FLG ++     AR   A +    ++IQK   +  ++LQ++    R+  
Sbjct: 6   SLACLLLSGCVFFLGVFVSSSLYARKKRAFL----EKIQKLEHEN-QLLQTSLNLSRHQE 60

Query: 160 KLVENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFGKITA 208
           +L+E+ + R ALS+  +I        K + ++ +++FGD  +SF  I +
Sbjct: 61  QLIEDFSNRLALSSHKLI--------KDMKEEAQNYFGDTSKSFQSILS 101


>sp|A7I1V8|SECA_CAMHC Protein translocase subunit SecA OS=Campylobacter hominis (strain
           ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=secA
           PE=3 SV=1
          Length = 884

 Score = 30.8 bits (68), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 155 FRYGYKLVENGNLRAALSTSDVIELPTPDKLKTVLDKVKDFFGDAKESFG--KITA-LNS 211
           +RY  +L+E     A     D I     D +  VLD+++ F GD+KE+F   KIT+ + S
Sbjct: 628 YRYRNELLE-----ADFDLHDKIISNREDYIANVLDRLEIFDGDSKENFDIQKITSIIKS 682

Query: 212 TSSEESEENSKEKAK 226
            ++E  +EN   KA+
Sbjct: 683 ETTEILDENKLSKAE 697


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.132    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,086,595
Number of Sequences: 539616
Number of extensions: 3214449
Number of successful extensions: 10806
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 10794
Number of HSP's gapped (non-prelim): 20
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)