Query 027253
Match_columns 226
No_of_seqs 144 out of 917
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:11:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3339 Predicted glycosyltran 100.0 5.1E-48 1.1E-52 316.4 13.1 199 17-226 13-211 (211)
2 PF08660 Alg14: Oligosaccharid 100.0 2.2E-47 4.8E-52 315.0 16.1 170 47-225 1-170 (170)
3 PRK12446 undecaprenyldiphospho 100.0 6.4E-30 1.4E-34 232.3 14.7 154 46-225 3-162 (352)
4 COG0707 MurG UDP-N-acetylgluco 100.0 6.7E-29 1.5E-33 226.2 14.1 155 45-224 1-161 (357)
5 TIGR00215 lpxB lipid-A-disacch 99.8 1.4E-19 3.1E-24 166.2 8.5 151 45-224 6-165 (385)
6 PRK00025 lpxB lipid-A-disaccha 99.6 4.6E-16 1E-20 140.7 9.3 155 44-224 1-161 (380)
7 TIGR03492 conserved hypothetic 99.6 1.2E-15 2.6E-20 141.0 8.7 146 53-226 4-189 (396)
8 cd03785 GT1_MurG MurG is an N- 99.6 2.2E-14 4.8E-19 127.7 15.8 154 46-225 1-160 (350)
9 TIGR01133 murG undecaprenyldip 99.6 1.1E-13 2.4E-18 123.1 14.8 153 45-224 1-157 (348)
10 PRK00726 murG undecaprenyldiph 99.5 1.6E-13 3.5E-18 123.3 14.4 154 45-224 2-161 (357)
11 PF03033 Glyco_transf_28: Glyc 99.2 8.5E-13 1.8E-17 103.4 -0.9 131 47-205 1-137 (139)
12 TIGR00661 MJ1255 conserved hyp 99.2 2.9E-11 6.3E-16 108.2 6.9 113 46-184 1-124 (321)
13 PRK13609 diacylglycerol glucos 99.0 1.6E-09 3.4E-14 98.4 9.2 153 43-216 3-162 (380)
14 PRK13608 diacylglycerol glucos 98.5 9E-07 2E-11 81.4 10.5 148 43-216 4-162 (391)
15 TIGR03568 NeuC_NnaA UDP-N-acet 98.1 2.5E-05 5.5E-10 71.5 11.1 158 45-225 1-175 (365)
16 PF04007 DUF354: Protein of un 98.0 0.00013 2.7E-09 66.6 13.3 133 45-209 1-133 (335)
17 PF13477 Glyco_trans_4_2: Glyc 98.0 0.00028 6E-09 54.7 13.4 108 46-185 1-110 (139)
18 cd03786 GT1_UDP-GlcNAc_2-Epime 98.0 0.0002 4.4E-09 64.0 13.6 79 131-216 74-156 (363)
19 cd03784 GT1_Gtf_like This fami 97.8 0.00017 3.7E-09 65.7 10.6 33 45-78 1-34 (401)
20 PRK05749 3-deoxy-D-manno-octul 97.7 0.0032 6.9E-08 58.1 16.9 133 47-216 53-193 (425)
21 TIGR00236 wecB UDP-N-acetylglu 97.6 0.00071 1.5E-08 61.1 11.6 159 45-225 1-172 (365)
22 cd03819 GT1_WavL_like This fam 97.5 0.0011 2.3E-08 58.3 11.2 135 45-214 1-137 (355)
23 cd03816 GT1_ALG1_like This fam 97.3 0.0081 1.8E-07 55.6 14.8 151 44-215 3-174 (415)
24 PLN02871 UDP-sulfoquinovose:DA 97.2 0.0018 3.9E-08 60.7 9.0 145 42-215 56-219 (465)
25 cd04951 GT1_WbdM_like This fam 97.2 0.0064 1.4E-07 53.3 11.6 105 51-184 9-113 (360)
26 cd03808 GT1_cap1E_like This fa 97.1 0.01 2.2E-07 50.8 12.5 143 46-216 1-153 (359)
27 PF13528 Glyco_trans_1_3: Glyc 97.0 0.011 2.5E-07 51.9 12.0 118 45-187 1-127 (318)
28 PLN02605 monogalactosyldiacylg 97.0 0.005 1.1E-07 56.3 9.8 68 139-215 94-164 (382)
29 TIGR01426 MGT glycosyltransfer 96.9 0.006 1.3E-07 55.7 9.1 23 51-73 3-25 (392)
30 cd03807 GT1_WbnK_like This fam 96.9 0.034 7.3E-07 47.8 13.2 133 51-214 9-149 (365)
31 cd03794 GT1_wbuB_like This fam 96.8 0.017 3.7E-07 50.0 11.4 149 54-216 14-180 (394)
32 cd04962 GT1_like_5 This family 96.7 0.039 8.5E-07 48.8 13.1 143 45-214 1-155 (371)
33 PLN02275 transferase, transfer 96.5 0.093 2E-06 47.7 14.4 152 46-215 6-179 (371)
34 TIGR03088 stp2 sugar transfera 96.4 0.034 7.3E-07 49.8 10.6 131 51-214 11-149 (374)
35 cd03820 GT1_amsD_like This fam 96.1 0.071 1.5E-06 45.4 10.6 131 53-213 12-147 (348)
36 cd03801 GT1_YqgM_like This fam 96.1 0.09 1.9E-06 44.8 11.1 135 54-216 14-159 (374)
37 PF13579 Glyco_trans_4_4: Glyc 96.1 0.0097 2.1E-07 45.7 4.6 133 54-216 1-144 (160)
38 cd03812 GT1_CapH_like This fam 96.0 0.24 5.3E-06 43.3 13.8 139 46-215 1-151 (358)
39 COG1817 Uncharacterized protei 96.0 0.11 2.4E-06 47.0 11.5 133 45-208 1-133 (346)
40 cd03811 GT1_WabH_like This fam 96.0 0.056 1.2E-06 46.0 9.3 141 46-216 1-150 (353)
41 COG1819 Glycosyl transferases, 95.9 0.0082 1.8E-07 56.0 4.0 34 44-78 1-35 (406)
42 PF04413 Glycos_transf_N: 3-De 95.8 0.2 4.4E-06 41.7 11.8 142 46-225 23-180 (186)
43 cd03823 GT1_ExpE7_like This fa 95.8 0.2 4.3E-06 43.2 12.1 72 135-215 86-157 (359)
44 cd03796 GT1_PIG-A_like This fa 95.8 0.098 2.1E-06 47.7 10.7 138 52-212 12-155 (398)
45 cd03800 GT1_Sucrose_synthase T 95.8 0.057 1.2E-06 48.1 8.7 107 53-179 20-129 (398)
46 cd03806 GT1_ALG11_like This fa 95.7 0.12 2.6E-06 48.1 10.7 40 122-161 84-124 (419)
47 PRK15179 Vi polysaccharide bio 95.5 0.33 7.1E-06 48.6 13.7 125 40-181 276-430 (694)
48 PRK10307 putative glycosyl tra 95.5 0.32 6.9E-06 44.5 12.7 66 144-216 105-186 (412)
49 PRK09922 UDP-D-galactose:(gluc 95.5 0.19 4.1E-06 45.2 11.0 142 45-215 1-147 (359)
50 PLN02448 UDP-glycosyltransfera 95.3 0.3 6.5E-06 46.2 12.1 38 40-78 6-46 (459)
51 TIGR03590 PseG pseudaminic aci 95.3 0.35 7.6E-06 42.6 11.8 115 54-211 14-128 (279)
52 cd05844 GT1_like_7 Glycosyltra 95.2 0.15 3.2E-06 45.1 9.5 77 132-216 69-157 (367)
53 cd03802 GT1_AviGT4_like This f 95.2 0.66 1.4E-05 40.2 13.4 109 45-185 1-118 (335)
54 PLN02949 transferase, transfer 95.1 0.79 1.7E-05 43.5 14.6 124 44-179 33-165 (463)
55 COG0381 WecB UDP-N-acetylgluco 95.1 0.46 1E-05 44.1 12.4 162 43-225 2-176 (383)
56 COG1519 KdtA 3-deoxy-D-manno-o 95.1 1.8 4E-05 40.7 16.2 141 48-225 53-206 (419)
57 cd03817 GT1_UGDG_like This fam 94.7 0.4 8.6E-06 41.4 10.4 21 53-73 13-33 (374)
58 cd03814 GT1_like_2 This family 94.6 0.22 4.8E-06 43.1 8.6 133 54-215 14-158 (364)
59 cd03805 GT1_ALG2_like This fam 94.4 0.69 1.5E-05 41.4 11.7 34 45-79 1-37 (392)
60 cd04955 GT1_like_6 This family 94.2 1.2 2.6E-05 39.0 12.4 135 53-216 14-158 (363)
61 PF06925 MGDG_synth: Monogalac 94.0 0.52 1.1E-05 38.2 9.1 69 138-216 82-152 (169)
62 cd03798 GT1_wlbH_like This fam 94.0 0.93 2E-05 38.7 11.2 72 138-216 84-163 (377)
63 cd03822 GT1_ecORF704_like This 93.9 1 2.2E-05 39.0 11.5 75 136-216 67-150 (366)
64 PLN03007 UDP-glucosyltransfera 93.3 2.5 5.4E-05 40.3 13.7 36 44-80 5-41 (482)
65 cd03799 GT1_amsK_like This is 93.0 3.8 8.3E-05 35.5 13.6 81 128-216 62-145 (355)
66 KOG2941 Beta-1,4-mannosyltrans 92.7 3 6.5E-05 38.7 12.6 123 42-183 10-138 (444)
67 PRK10125 putative glycosyl tra 92.7 0.91 2E-05 42.2 9.6 120 45-183 1-135 (405)
68 TIGR02149 glgA_Coryne glycogen 91.8 1.6 3.4E-05 39.0 9.8 63 144-214 82-157 (388)
69 PLN02210 UDP-glucosyl transfer 91.8 2.5 5.4E-05 40.1 11.5 36 43-79 7-45 (456)
70 cd03821 GT1_Bme6_like This fam 91.6 1.8 4E-05 37.1 9.7 26 52-78 12-37 (375)
71 cd01635 Glycosyltransferase_GT 91.5 1.3 2.8E-05 35.4 8.2 40 141-185 47-86 (229)
72 PF13439 Glyco_transf_4: Glyco 91.5 0.99 2.2E-05 34.9 7.3 87 51-163 9-98 (177)
73 PRK01021 lpxB lipid-A-disaccha 91.4 4.5 9.7E-05 39.9 12.9 92 126-224 291-388 (608)
74 TIGR03449 mycothiol_MshA UDP-N 90.7 2.5 5.5E-05 38.2 10.2 28 51-79 17-44 (405)
75 PLN00414 glycosyltransferase f 90.1 5.2 0.00011 37.9 11.9 36 43-79 3-39 (446)
76 PLN02670 transferase, transfer 89.2 6.6 0.00014 37.6 11.9 35 44-79 6-41 (472)
77 PLN02208 glycosyltransferase f 88.8 11 0.00025 35.5 13.2 35 44-79 4-39 (442)
78 cd03825 GT1_wcfI_like This fam 87.5 3 6.4E-05 36.4 7.9 29 45-73 1-32 (365)
79 PRK06849 hypothetical protein; 86.8 5.3 0.00011 36.6 9.5 86 42-156 2-87 (389)
80 PLN02863 UDP-glucoronosyl/UDP- 86.7 17 0.00036 34.8 13.0 37 42-79 7-44 (477)
81 PLN02534 UDP-glycosyltransfera 85.2 21 0.00046 34.3 12.9 36 43-79 7-43 (491)
82 cd03809 GT1_mtfB_like This fam 84.9 4.1 8.9E-05 35.1 7.4 86 53-159 14-99 (365)
83 PRK13011 formyltetrahydrofolat 84.2 7.9 0.00017 34.6 8.9 94 42-161 87-181 (286)
84 PRK13010 purU formyltetrahydro 84.1 6.5 0.00014 35.2 8.4 94 42-161 91-185 (289)
85 PRK10017 colanic acid biosynth 83.6 7.9 0.00017 36.5 9.1 38 45-82 1-42 (426)
86 PF00551 Formyl_trans_N: Formy 83.1 9 0.0002 31.4 8.3 26 136-161 70-95 (181)
87 PRK06027 purU formyltetrahydro 82.9 9.1 0.0002 34.1 8.8 94 42-161 87-181 (286)
88 TIGR00655 PurU formyltetrahydr 82.6 8.6 0.00019 34.2 8.5 94 42-161 82-176 (280)
89 PLN02992 coniferyl-alcohol glu 82.6 23 0.0005 34.0 11.9 36 45-82 6-43 (481)
90 cd08551 Fe-ADH iron-containing 82.3 15 0.00032 33.5 10.3 29 133-161 68-96 (370)
91 PRK09423 gldA glycerol dehydro 80.8 20 0.00044 32.7 10.6 46 134-184 73-118 (366)
92 PLN03015 UDP-glucosyl transfer 80.7 20 0.00044 34.3 10.8 35 45-80 4-40 (470)
93 TIGR00639 PurN phosphoribosylg 80.5 12 0.00027 31.2 8.3 24 138-161 72-95 (190)
94 PLN02562 UDP-glycosyltransfera 80.4 27 0.00059 33.0 11.5 36 45-82 7-43 (448)
95 PRK05647 purN phosphoribosylgl 80.3 16 0.00035 30.8 9.0 23 138-160 73-95 (200)
96 PF06258 Mito_fiss_Elm1: Mitoc 80.2 4.8 0.0001 36.3 6.1 35 143-181 55-89 (311)
97 cd07766 DHQ_Fe-ADH Dehydroquin 80.2 23 0.00049 31.7 10.5 46 133-183 66-113 (332)
98 KOG1387 Glycosyltransferase [C 79.7 54 0.0012 30.7 13.8 60 106-172 108-173 (465)
99 TIGR02472 sucr_P_syn_N sucrose 78.4 24 0.00051 32.8 10.4 124 44-182 16-145 (439)
100 PLN02331 phosphoribosylglycina 78.1 19 0.00042 30.6 8.8 92 46-161 1-94 (207)
101 cd03795 GT1_like_4 This family 77.9 24 0.00051 30.5 9.7 21 53-73 13-33 (357)
102 PF02684 LpxB: Lipid-A-disacch 76.5 13 0.00028 34.5 7.9 93 125-224 62-160 (373)
103 PF02350 Epimerase_2: UDP-N-ac 75.8 7.5 0.00016 35.4 6.1 82 138-225 60-153 (346)
104 PLN02152 indole-3-acetate beta 75.8 37 0.0008 32.3 10.9 34 45-79 4-39 (455)
105 PRK15454 ethanol dehydrogenase 75.7 11 0.00025 34.9 7.4 29 133-161 94-122 (395)
106 PRK08340 glucose-1-dehydrogena 75.7 27 0.00059 29.5 9.3 32 45-81 1-32 (259)
107 PLN02167 UDP-glycosyltransfera 75.7 75 0.0016 30.2 13.4 29 44-72 3-32 (475)
108 PF09314 DUF1972: Domain of un 75.4 47 0.001 27.8 10.9 140 53-216 16-168 (185)
109 cd08190 HOT Hydroxyacid-oxoaci 75.1 15 0.00032 34.4 8.0 29 133-161 68-96 (414)
110 PLN02735 carbamoyl-phosphate s 74.7 21 0.00046 37.8 9.8 30 44-73 23-59 (1102)
111 PF03853 YjeF_N: YjeF-related 74.4 13 0.00028 30.2 6.6 50 42-91 23-72 (169)
112 PF04321 RmlD_sub_bind: RmlD s 74.2 8.9 0.00019 33.7 6.0 43 139-185 45-104 (286)
113 COG1454 EutG Alcohol dehydroge 73.7 36 0.00077 31.8 10.0 31 133-163 74-104 (377)
114 cd08189 Fe-ADH5 Iron-containin 73.3 18 0.00039 33.2 8.0 29 133-161 71-99 (374)
115 cd08175 G1PDH Glycerol-1-phosp 72.8 30 0.00065 31.3 9.3 42 136-183 72-113 (348)
116 TIGR02638 lactal_redase lactal 72.6 16 0.00035 33.6 7.5 29 133-161 74-102 (379)
117 PRK10538 malonic semialdehyde 72.3 35 0.00077 28.6 9.1 32 45-81 1-32 (248)
118 PRK14089 ipid-A-disaccharide s 71.9 15 0.00032 33.7 7.0 72 144-224 75-151 (347)
119 cd08177 MAR Maleylacetate redu 71.8 32 0.00069 31.1 9.2 46 133-183 65-110 (337)
120 PLN03004 UDP-glycosyltransfera 71.8 42 0.00092 31.9 10.3 27 45-71 4-31 (451)
121 cd08192 Fe-ADH7 Iron-containin 71.7 19 0.00041 32.9 7.7 29 133-161 69-97 (370)
122 cd08194 Fe-ADH6 Iron-containin 71.2 21 0.00046 32.7 7.9 30 133-162 68-97 (375)
123 cd08193 HVD 5-hydroxyvalerate 71.1 19 0.00042 33.0 7.7 30 133-162 71-100 (376)
124 PRK09860 putative alcohol dehy 69.8 22 0.00048 32.8 7.8 31 133-163 76-106 (383)
125 cd02067 B12-binding B12 bindin 69.6 43 0.00092 25.1 8.2 34 46-81 1-35 (119)
126 COG4671 Predicted glycosyl tra 69.4 21 0.00045 33.2 7.3 36 45-81 10-50 (400)
127 cd05292 LDH_2 A subgroup of L- 69.1 85 0.0018 28.0 12.6 33 45-81 1-33 (308)
128 PF00465 Fe-ADH: Iron-containi 68.9 31 0.00068 31.3 8.5 31 133-163 66-96 (366)
129 PF00175 NAD_binding_1: Oxidor 68.5 10 0.00022 27.5 4.4 35 48-84 1-36 (109)
130 PRK10624 L-1,2-propanediol oxi 68.0 24 0.00052 32.5 7.6 29 133-161 75-103 (382)
131 cd08176 LPO Lactadehyde:propan 67.7 20 0.00044 32.8 7.1 29 133-161 73-101 (377)
132 TIGR02622 CDP_4_6_dhtase CDP-g 67.6 46 0.001 29.6 9.3 32 44-80 4-35 (349)
133 cd08185 Fe-ADH1 Iron-containin 67.5 31 0.00066 31.7 8.2 30 133-162 71-100 (380)
134 PRK15490 Vi polysaccharide bio 67.2 1.4E+02 0.0029 29.6 14.3 46 130-181 265-310 (578)
135 cd08191 HHD 6-hydroxyhexanoate 67.0 71 0.0015 29.4 10.5 28 136-163 70-97 (386)
136 PRK12744 short chain dehydroge 67.0 76 0.0016 26.6 10.8 26 45-73 9-34 (257)
137 PLN02410 UDP-glucoronosyl/UDP- 66.2 9.7 0.00021 36.1 4.7 37 43-80 6-43 (451)
138 PLN02555 limonoid glucosyltran 66.0 10 0.00022 36.3 4.9 36 44-80 7-43 (480)
139 PRK12825 fabG 3-ketoacyl-(acyl 65.7 70 0.0015 26.1 9.4 26 45-73 7-32 (249)
140 PRK10422 lipopolysaccharide co 65.7 1E+02 0.0022 27.7 11.1 104 43-172 4-109 (352)
141 cd08173 Gro1PDH Sn-glycerol-1- 65.6 15 0.00032 33.2 5.6 46 133-183 66-111 (339)
142 PLN02780 ketoreductase/ oxidor 65.1 44 0.00094 29.8 8.5 33 44-81 53-85 (320)
143 cd08181 PPD-like 1,3-propanedi 65.0 33 0.00071 31.3 7.8 29 133-161 71-99 (357)
144 PLN00142 sucrose synthase 64.7 54 0.0012 33.7 9.8 29 144-178 407-435 (815)
145 cd08170 GlyDH Glycerol dehydro 64.4 15 0.00032 33.3 5.4 46 134-184 66-111 (351)
146 PRK08265 short chain dehydroge 64.1 75 0.0016 26.9 9.5 32 45-81 7-38 (261)
147 TIGR00715 precor6x_red precorr 63.6 12 0.00026 32.9 4.5 25 45-73 1-25 (256)
148 cd08188 Fe-ADH4 Iron-containin 62.5 37 0.00081 31.1 7.8 28 134-161 74-101 (377)
149 COG1646 Predicted phosphate-bi 62.2 1E+02 0.0023 26.9 9.8 42 45-86 42-84 (240)
150 PRK12767 carbamoyl phosphate s 61.7 43 0.00092 29.5 7.8 30 45-79 2-31 (326)
151 PF12500 TRSP: TRSP domain C t 61.5 15 0.00033 29.9 4.4 37 47-85 59-95 (155)
152 cd03792 GT1_Trehalose_phosphor 61.5 71 0.0015 28.5 9.3 32 46-77 1-35 (372)
153 TIGR02470 sucr_synth sucrose s 61.3 1.3E+02 0.0028 30.9 11.8 30 144-179 384-413 (784)
154 COG0062 Uncharacterized conser 60.2 27 0.00058 29.8 5.9 44 44-87 49-92 (203)
155 cd08183 Fe-ADH2 Iron-containin 60.2 51 0.0011 30.2 8.2 29 133-161 63-91 (374)
156 cd08182 HEPD Hydroxyethylphosp 60.1 48 0.001 30.2 8.0 29 133-161 65-93 (367)
157 cd08186 Fe-ADH8 Iron-containin 60.0 44 0.00096 30.7 7.8 29 133-161 72-100 (383)
158 PLN02173 UDP-glucosyl transfer 59.2 16 0.00034 34.8 4.7 38 43-82 4-42 (449)
159 PRK06196 oxidoreductase; Provi 58.5 83 0.0018 27.6 9.1 33 44-81 26-58 (315)
160 PF02302 PTS_IIB: PTS system, 58.4 25 0.00054 24.8 4.8 28 46-73 1-30 (90)
161 cd08172 GlyDH-like1 Glycerol d 58.2 24 0.00052 32.0 5.6 46 133-183 64-109 (347)
162 PRK05557 fabG 3-ketoacyl-(acyl 57.8 1E+02 0.0022 25.1 9.9 33 44-81 5-37 (248)
163 cd08171 GlyDH-like2 Glycerol d 57.7 24 0.00052 32.0 5.5 46 134-184 67-112 (345)
164 cd06200 SiR_like1 Cytochrome p 57.5 30 0.00065 29.6 5.9 33 47-81 113-145 (245)
165 PRK05294 carB carbamoyl phosph 57.2 60 0.0013 34.2 9.0 24 138-161 75-99 (1066)
166 COG3980 spsG Spore coat polysa 57.2 14 0.0003 33.4 3.7 37 45-83 1-42 (318)
167 cd08550 GlyDH-like Glycerol_de 56.9 26 0.00056 31.8 5.6 46 133-183 65-110 (349)
168 PLN02253 xanthoxin dehydrogena 56.9 1.1E+02 0.0025 25.9 9.5 33 44-81 18-50 (280)
169 PRK05866 short chain dehydroge 56.0 1.4E+02 0.003 26.0 10.5 34 44-82 40-73 (293)
170 PF10686 DUF2493: Protein of u 55.7 60 0.0013 22.7 6.2 46 134-183 20-66 (71)
171 PLN00112 malate dehydrogenase 55.7 1.9E+02 0.0042 27.6 13.1 128 42-172 98-242 (444)
172 PF11395 DUF2873: Protein of u 54.9 31 0.00067 21.4 3.9 11 6-16 8-18 (43)
173 PLN02653 GDP-mannose 4,6-dehyd 54.9 71 0.0015 28.2 8.0 32 44-80 6-37 (340)
174 PRK07024 short chain dehydroge 54.8 1E+02 0.0023 25.8 8.8 32 45-81 3-34 (257)
175 PRK07231 fabG 3-ketoacyl-(acyl 54.6 1.2E+02 0.0026 24.9 9.2 34 44-82 5-38 (251)
176 PLN02828 formyltetrahydrofolat 54.4 1.1E+02 0.0024 27.1 9.0 40 42-83 68-108 (268)
177 PRK12815 carB carbamoyl phosph 54.4 99 0.0021 32.7 10.0 24 138-161 75-99 (1068)
178 cd06188 NADH_quinone_reductase 54.3 34 0.00073 29.8 5.8 21 47-69 154-174 (283)
179 PRK00066 ldh L-lactate dehydro 54.2 1.6E+02 0.0036 26.4 14.0 130 42-177 4-143 (315)
180 PRK11104 hemG protoporphyrinog 53.1 84 0.0018 25.6 7.6 28 45-73 1-30 (177)
181 COG4821 Uncharacterized protei 52.6 26 0.00057 30.2 4.5 55 147-207 108-165 (243)
182 TIGR01369 CPSaseII_lrg carbamo 52.4 93 0.002 32.8 9.5 34 44-78 6-46 (1050)
183 PLN02764 glycosyltransferase f 51.5 25 0.00053 33.5 4.7 35 44-79 5-40 (453)
184 PRK10926 ferredoxin-NADP reduc 51.5 39 0.00086 28.9 5.7 38 45-84 107-146 (248)
185 PF02633 Creatininase: Creatin 50.4 32 0.00068 29.4 4.9 37 45-81 101-137 (237)
186 TIGR01759 MalateDH-SF1 malate 50.3 2E+02 0.0042 26.1 13.7 43 134-179 108-153 (323)
187 cd06192 DHOD_e_trans_like FAD/ 50.0 41 0.0009 28.4 5.5 36 45-83 98-134 (243)
188 TIGR03172 probable selenium-de 50.0 25 0.00053 30.5 4.1 30 51-82 5-34 (232)
189 PRK12827 short chain dehydroge 49.8 1.4E+02 0.0031 24.4 10.6 27 44-73 6-32 (249)
190 PRK13894 conjugal transfer ATP 49.5 82 0.0018 28.5 7.6 40 44-83 148-188 (319)
191 PRK00994 F420-dependent methyl 48.8 1.9E+02 0.0042 25.5 10.2 39 140-181 55-94 (277)
192 COG0763 LpxB Lipid A disacchar 48.7 74 0.0016 29.8 7.2 94 124-224 64-163 (381)
193 PRK10084 dTDP-glucose 4,6 dehy 48.4 1.3E+02 0.0027 26.6 8.6 26 45-73 1-26 (352)
194 PRK06181 short chain dehydroge 48.4 1.6E+02 0.0035 24.6 9.8 32 45-81 2-33 (263)
195 COG0052 RpsB Ribosomal protein 48.3 1.2E+02 0.0026 26.8 8.0 34 146-185 157-191 (252)
196 TIGR03325 BphB_TodD cis-2,3-di 48.2 1.7E+02 0.0036 24.6 9.2 32 45-81 6-37 (262)
197 PRK00843 egsA NAD(P)-dependent 47.4 43 0.00094 30.4 5.5 45 134-183 76-120 (350)
198 PF13528 Glyco_trans_1_3: Glyc 47.3 1.6E+02 0.0035 25.4 9.0 42 145-195 250-291 (318)
199 KOG1014 17 beta-hydroxysteroid 47.2 1.5E+02 0.0032 27.1 8.7 33 46-83 50-83 (312)
200 PRK05802 hypothetical protein; 46.9 57 0.0012 29.4 6.2 37 45-84 173-210 (320)
201 PRK02261 methylaspartate mutas 46.8 1.4E+02 0.0031 23.4 8.5 38 43-82 2-40 (137)
202 PRK12311 rpsB 30S ribosomal pr 46.7 1.7E+02 0.0036 26.8 9.0 35 145-185 152-187 (326)
203 PLN02554 UDP-glycosyltransfera 46.6 26 0.00056 33.4 4.0 28 44-71 2-30 (481)
204 cd06219 DHOD_e_trans_like1 FAD 46.2 48 0.001 28.3 5.4 33 47-82 101-133 (248)
205 PRK07831 short chain dehydroge 45.9 1.8E+02 0.0039 24.4 9.7 33 44-80 17-49 (262)
206 PRK07814 short chain dehydroge 45.9 1.8E+02 0.0039 24.4 9.9 33 44-81 10-42 (263)
207 cd08549 G1PDH_related Glycerol 45.8 47 0.001 29.9 5.5 42 136-183 72-113 (332)
208 PRK06222 ferredoxin-NADP(+) re 45.6 47 0.001 29.1 5.3 36 45-83 99-135 (281)
209 cd06211 phenol_2-monooxygenase 45.4 54 0.0012 27.6 5.5 36 47-84 113-149 (238)
210 PF01470 Peptidase_C15: Pyrogl 45.2 51 0.0011 27.7 5.3 25 45-69 1-28 (202)
211 PLN02896 cinnamyl-alcohol dehy 45.1 39 0.00084 30.2 4.8 31 40-73 6-36 (353)
212 cd01425 RPS2 Ribosomal protein 45.0 1.2E+02 0.0026 25.2 7.4 36 144-185 126-162 (193)
213 KOG0534 NADH-cytochrome b-5 re 44.7 61 0.0013 29.1 5.8 24 44-69 156-180 (286)
214 PRK00054 dihydroorotate dehydr 44.2 57 0.0012 27.8 5.5 36 45-83 103-139 (250)
215 PHA03392 egt ecdysteroid UDP-g 44.2 3E+02 0.0065 26.5 12.6 35 45-80 21-57 (507)
216 PRK12429 3-hydroxybutyrate deh 44.1 1.8E+02 0.0039 23.9 9.9 33 45-82 5-37 (258)
217 PRK09072 short chain dehydroge 44.0 1.9E+02 0.0042 24.2 9.7 32 45-81 6-37 (263)
218 PRK07825 short chain dehydroge 43.9 2E+02 0.0043 24.3 8.9 27 44-73 5-31 (273)
219 PRK06138 short chain dehydroge 43.9 1.8E+02 0.004 23.9 9.5 33 44-81 5-37 (252)
220 cd06185 PDR_like Phthalate dio 43.5 72 0.0016 26.0 5.9 34 47-83 102-135 (211)
221 PRK05884 short chain dehydroge 43.4 40 0.00088 28.0 4.4 31 45-80 1-31 (223)
222 CHL00194 ycf39 Ycf39; Provisio 43.2 31 0.00068 30.4 3.8 26 45-73 1-26 (317)
223 PRK12829 short chain dehydroge 42.9 1.9E+02 0.0042 23.9 9.3 34 43-81 10-43 (264)
224 TIGR03590 PseG pseudaminic aci 42.3 1.9E+02 0.0042 25.1 8.7 29 145-183 241-269 (279)
225 cd00322 FNR_like Ferredoxin re 42.3 64 0.0014 26.3 5.4 37 45-83 98-136 (223)
226 COG1087 GalE UDP-glucose 4-epi 42.1 1.5E+02 0.0031 27.2 7.8 23 139-161 61-83 (329)
227 COG1899 DYS1 Deoxyhypusine syn 42.1 75 0.0016 28.9 6.0 19 53-71 36-54 (318)
228 TIGR00460 fmt methionyl-tRNA f 41.9 1.5E+02 0.0033 26.5 8.1 23 139-161 72-94 (313)
229 PRK13932 stationary phase surv 41.7 1.4E+02 0.003 26.4 7.6 121 42-181 3-132 (257)
230 COG0458 CarB Carbamoylphosphat 41.4 1.3E+02 0.0028 28.4 7.6 27 137-163 62-89 (400)
231 PRK08063 enoyl-(acyl carrier p 41.2 2E+02 0.0044 23.6 9.2 26 45-73 5-30 (250)
232 TIGR01757 Malate-DH_plant mala 41.0 3.1E+02 0.0067 25.7 11.8 29 40-68 40-71 (387)
233 COG3660 Predicted nucleoside-d 40.9 1.1E+02 0.0024 27.6 6.7 25 45-69 1-26 (329)
234 PF02504 FA_synthesis: Fatty a 40.7 1.6E+02 0.0035 26.8 8.1 104 45-158 1-107 (323)
235 PRK05713 hypothetical protein; 40.7 69 0.0015 28.4 5.7 23 47-71 196-218 (312)
236 PLN02735 carbamoyl-phosphate s 40.6 62 0.0013 34.4 6.1 22 138-159 642-664 (1102)
237 cd06189 flavin_oxioreductase N 40.6 67 0.0015 26.7 5.3 35 47-83 102-137 (224)
238 cd06218 DHOD_e_trans FAD/NAD b 40.4 73 0.0016 27.1 5.6 34 46-82 101-134 (246)
239 COG0707 MurG UDP-N-acetylgluco 40.4 3E+02 0.0064 25.3 9.9 55 146-210 253-308 (357)
240 COG1018 Hmp Flavodoxin reducta 40.1 60 0.0013 28.6 5.1 36 46-83 113-148 (266)
241 TIGR03736 PRTRC_ThiF PRTRC sys 39.9 20 0.00043 31.3 2.0 23 43-65 10-34 (244)
242 cd06220 DHOD_e_trans_like2 FAD 39.9 64 0.0014 27.2 5.1 32 47-82 92-123 (233)
243 PRK10916 ADP-heptose:LPS hepto 39.8 2.7E+02 0.0059 24.7 10.8 100 45-172 1-102 (348)
244 PRK09548 PTS system ascorbate- 39.7 1.4E+02 0.003 29.7 7.8 32 42-73 504-537 (602)
245 PRK13289 bifunctional nitric o 39.6 56 0.0012 29.8 5.0 36 45-82 262-299 (399)
246 PLN03116 ferredoxin--NADP+ red 39.4 73 0.0016 28.3 5.6 20 47-68 160-179 (307)
247 PLN02166 dTDP-glucose 4,6-dehy 39.4 50 0.0011 31.0 4.7 30 41-73 117-146 (436)
248 TIGR02782 TrbB_P P-type conjug 38.6 1.4E+02 0.0029 26.7 7.2 36 45-80 133-169 (299)
249 cd06183 cyt_b5_reduct_like Cyt 38.6 68 0.0015 26.5 5.0 24 45-70 105-129 (234)
250 COG1029 FwdB Formylmethanofura 38.6 61 0.0013 30.3 4.9 51 135-196 324-376 (429)
251 cd00636 TroA-like Helical back 38.6 48 0.001 24.3 3.8 36 141-183 57-92 (148)
252 cd08178 AAD_C C-terminal alcoh 38.4 34 0.00074 31.7 3.4 28 134-161 67-94 (398)
253 cd08179 NADPH_BDH NADPH-depend 38.4 35 0.00076 31.3 3.5 29 133-161 69-97 (375)
254 PRK10565 putative carbohydrate 38.4 85 0.0018 30.3 6.2 42 45-86 61-102 (508)
255 PRK07774 short chain dehydroge 37.9 2.3E+02 0.005 23.3 10.0 34 44-82 6-39 (250)
256 KOG1192 UDP-glucuronosyl and U 37.6 59 0.0013 30.3 5.0 37 44-81 6-42 (496)
257 cd08180 PDD 1,3-propanediol de 37.5 35 0.00076 30.7 3.3 29 133-161 66-94 (332)
258 COG2805 PilT Tfp pilus assembl 37.4 83 0.0018 28.9 5.5 20 132-151 185-204 (353)
259 PTZ00274 cytochrome b5 reducta 37.3 77 0.0017 28.7 5.4 23 45-69 160-183 (325)
260 cd06197 FNR_like_2 FAD/NAD(P) 37.3 93 0.002 26.0 5.7 22 46-69 127-149 (220)
261 PF13314 DUF4083: Domain of un 37.2 83 0.0018 21.4 4.2 31 1-31 1-31 (58)
262 cd05291 HicDH_like L-2-hydroxy 37.2 2.9E+02 0.0064 24.4 13.1 59 115-176 78-137 (306)
263 PLN00164 glucosyltransferase; 37.1 48 0.001 31.7 4.2 27 45-71 4-31 (480)
264 PRK10684 HCP oxidoreductase, N 36.8 73 0.0016 28.5 5.2 36 47-84 115-151 (332)
265 cd06196 FNR_like_1 Ferredoxin 36.6 72 0.0016 26.2 4.9 35 47-83 103-138 (218)
266 TIGR01179 galE UDP-glucose-4-e 36.6 2.2E+02 0.0049 24.2 8.2 25 46-73 1-25 (328)
267 PF00437 T2SE: Type II/IV secr 36.5 2.5E+02 0.0055 23.9 8.4 39 45-85 128-167 (270)
268 cd06214 PA_degradation_oxidore 36.2 94 0.002 25.9 5.6 25 44-70 108-133 (241)
269 PRK08345 cytochrome-c3 hydroge 36.2 88 0.0019 27.5 5.6 37 46-84 110-149 (289)
270 cd06187 O2ase_reductase_like T 36.1 91 0.002 25.6 5.4 25 45-71 99-124 (224)
271 KOG1201 Hydroxysteroid 17-beta 36.0 2.4E+02 0.0052 25.5 8.2 26 44-72 38-63 (300)
272 PRK08177 short chain dehydroge 35.4 2.5E+02 0.0053 22.9 8.9 32 46-82 3-34 (225)
273 PF00056 Ldh_1_N: lactate/mala 35.4 2.2E+02 0.0047 22.3 12.6 128 45-177 1-139 (141)
274 PRK06988 putative formyltransf 35.4 1.8E+02 0.004 26.0 7.6 24 138-161 70-93 (312)
275 TIGR02911 sulfite_red_B sulfit 35.1 88 0.0019 27.0 5.3 24 45-70 100-124 (261)
276 PF00201 UDPGT: UDP-glucoronos 35.1 29 0.00062 32.6 2.4 33 46-79 2-34 (500)
277 PRK06756 flavodoxin; Provision 35.0 67 0.0015 25.0 4.2 29 45-73 2-32 (148)
278 cd01141 TroA_d Periplasmic bin 34.7 65 0.0014 25.8 4.2 39 138-182 62-100 (186)
279 PRK07478 short chain dehydroge 34.6 2.7E+02 0.0058 23.1 9.9 32 45-81 7-38 (254)
280 PRK09186 flagellin modificatio 34.5 54 0.0012 27.3 3.8 27 44-73 4-30 (256)
281 cd00755 YgdL_like Family of ac 34.4 2.1E+02 0.0045 24.6 7.4 21 44-64 11-33 (231)
282 TIGR01744 XPRTase xanthine pho 34.4 1.3E+02 0.0029 25.0 6.1 37 142-184 47-83 (191)
283 cd06221 sulfite_reductase_like 34.4 92 0.002 26.7 5.3 24 45-70 99-123 (253)
284 cd06191 FNR_iron_sulfur_bindin 34.3 1.1E+02 0.0023 25.5 5.6 38 45-84 103-142 (231)
285 PRK08267 short chain dehydroge 34.2 2.7E+02 0.0059 23.1 9.3 30 46-80 3-32 (260)
286 PRK00654 glgA glycogen synthas 34.2 3.9E+02 0.0085 24.9 12.3 38 45-83 1-45 (466)
287 cd01965 Nitrogenase_MoFe_beta_ 34.1 3.9E+02 0.0084 24.8 10.9 32 136-178 362-393 (428)
288 cd06213 oxygenase_e_transfer_s 33.9 82 0.0018 26.2 4.8 23 47-71 104-126 (227)
289 cd08187 BDH Butanol dehydrogen 33.9 41 0.00088 30.9 3.1 29 133-161 74-102 (382)
290 cd06190 T4MO_e_transfer_like T 33.9 1.1E+02 0.0024 25.3 5.6 24 45-70 98-122 (232)
291 COG5153 CVT17 Putative lipase 33.6 77 0.0017 28.9 4.7 45 135-184 263-308 (425)
292 KOG4540 Putative lipase essent 33.6 77 0.0017 28.9 4.7 45 135-184 263-308 (425)
293 cd06209 BenDO_FAD_NAD Benzoate 33.5 1.1E+02 0.0023 25.5 5.4 22 47-70 106-127 (228)
294 PRK06395 phosphoribosylamine-- 33.3 3.8E+02 0.0082 25.2 9.6 18 138-156 58-75 (435)
295 cd06210 MMO_FAD_NAD_binding Me 33.3 97 0.0021 25.8 5.2 22 47-70 112-133 (236)
296 PF02441 Flavoprotein: Flavopr 33.3 49 0.0011 25.4 3.1 35 45-81 1-35 (129)
297 cd01147 HemV-2 Metal binding p 33.1 76 0.0016 26.7 4.5 41 138-183 67-107 (262)
298 PRK09271 flavodoxin; Provision 33.1 79 0.0017 25.2 4.4 29 45-73 1-31 (160)
299 KOG0224 Aquaporin (major intri 33.1 21 0.00045 32.3 1.0 22 48-69 82-104 (316)
300 PRK06197 short chain dehydroge 32.8 3.2E+02 0.007 23.5 8.9 33 44-81 16-48 (306)
301 PRK05854 short chain dehydroge 32.8 3.4E+02 0.0073 23.8 10.4 35 43-82 13-47 (313)
302 cd08197 DOIS 2-deoxy-scyllo-in 32.8 3.9E+02 0.0084 24.4 10.8 46 134-182 70-118 (355)
303 TIGR01754 flav_RNR ribonucleot 32.8 56 0.0012 25.3 3.4 29 45-73 1-31 (140)
304 COG2236 Predicted phosphoribos 32.7 1.1E+02 0.0023 25.9 5.2 46 136-184 19-65 (192)
305 PF04478 Mid2: Mid2 like cell 32.7 19 0.00042 29.3 0.7 50 147-196 49-99 (154)
306 PRK05299 rpsB 30S ribosomal pr 32.6 3.4E+02 0.0075 23.8 9.0 35 145-185 157-192 (258)
307 smart00822 PKS_KR This enzymat 32.5 91 0.002 23.5 4.6 32 46-81 2-33 (180)
308 cd06216 FNR_iron_sulfur_bindin 32.5 1.3E+02 0.0028 25.2 5.9 24 45-70 123-147 (243)
309 cd06194 FNR_N-term_Iron_sulfur 32.4 87 0.0019 25.8 4.7 24 45-70 98-122 (222)
310 PRK00005 fmt methionyl-tRNA fo 32.3 2.6E+02 0.0056 24.9 8.0 23 139-161 72-94 (309)
311 PRK05650 short chain dehydroge 32.3 3.1E+02 0.0066 23.1 9.5 31 45-80 1-31 (270)
312 PLN02657 3,8-divinyl protochlo 32.2 71 0.0015 29.4 4.5 29 42-73 58-86 (390)
313 cd06212 monooxygenase_like The 32.1 87 0.0019 26.1 4.7 35 45-81 104-140 (232)
314 PRK09219 xanthine phosphoribos 32.0 1.4E+02 0.0031 24.8 5.9 37 142-184 47-83 (189)
315 PLN02427 UDP-apiose/xylose syn 31.9 28 0.00061 31.6 1.7 28 40-70 10-37 (386)
316 PRK13833 conjugal transfer pro 31.9 2.5E+02 0.0054 25.5 7.8 37 45-81 145-182 (323)
317 PLN00198 anthocyanidin reducta 31.7 97 0.0021 27.3 5.1 28 43-73 8-35 (338)
318 PRK15138 aldehyde reductase; P 31.6 47 0.001 30.7 3.2 29 133-161 73-101 (387)
319 PRK08221 anaerobic sulfite red 31.4 1.2E+02 0.0025 26.3 5.5 23 46-70 103-126 (263)
320 PRK05086 malate dehydrogenase; 31.4 3.8E+02 0.0083 23.9 11.9 25 133-157 97-121 (312)
321 PRK06568 F0F1 ATP synthase sub 31.3 49 0.0011 26.9 2.8 19 1-19 1-19 (154)
322 PLN02695 GDP-D-mannose-3',5'-e 31.3 84 0.0018 28.5 4.7 31 40-73 17-47 (370)
323 PRK07890 short chain dehydroge 31.2 3E+02 0.0065 22.7 9.5 33 44-81 5-37 (258)
324 KOG2585 Uncharacterized conser 31.2 1.5E+02 0.0032 28.4 6.3 56 23-78 245-300 (453)
325 KOG2679 Purple (tartrate-resis 31.2 97 0.0021 28.0 4.8 17 40-56 39-55 (336)
326 COG0371 GldA Glycerol dehydrog 31.2 88 0.0019 29.0 4.8 39 141-184 80-118 (360)
327 cd06184 flavohem_like_fad_nad_ 31.1 1.1E+02 0.0025 25.6 5.3 23 45-69 114-137 (247)
328 TIGR02619 putative CRISPR-asso 30.9 2.8E+02 0.0062 22.3 13.4 41 142-186 100-143 (149)
329 PLN03183 acetylglucosaminyltra 30.9 4.7E+02 0.01 24.8 13.7 110 42-161 75-188 (421)
330 PRK12775 putative trifunctiona 30.8 5.9E+02 0.013 26.9 11.3 34 45-81 100-134 (1006)
331 COG1058 CinA Predicted nucleot 30.7 47 0.001 29.3 2.8 44 135-184 51-97 (255)
332 KOG3857 Alcohol dehydrogenase, 30.5 3.4E+02 0.0074 25.5 8.3 87 62-164 60-146 (465)
333 PF02719 Polysacc_synt_2: Poly 30.5 2.8E+02 0.006 25.0 7.7 23 139-161 71-93 (293)
334 PRK07609 CDP-6-deoxy-delta-3,4 30.4 73 0.0016 28.5 4.1 34 47-82 208-242 (339)
335 PRK08251 short chain dehydroge 30.3 3.1E+02 0.0067 22.5 9.5 32 45-81 3-34 (248)
336 COG0543 UbiB 2-polyprenylpheno 30.2 1.1E+02 0.0023 26.5 5.0 33 47-81 110-144 (252)
337 PRK07326 short chain dehydroge 30.2 3E+02 0.0065 22.3 9.2 32 45-81 7-38 (237)
338 PF01497 Peripla_BP_2: Peripla 30.2 1.3E+02 0.0027 24.7 5.3 40 139-184 54-93 (238)
339 PRK05717 oxidoreductase; Valid 30.1 3.2E+02 0.007 22.7 9.6 31 45-80 11-41 (255)
340 PRK12815 carB carbamoyl phosph 30.0 1.9E+02 0.0042 30.6 7.7 19 137-155 622-641 (1068)
341 cd00650 LDH_MDH_like NAD-depen 30.0 3.6E+02 0.0077 23.1 12.9 59 117-178 82-141 (263)
342 PRK10675 UDP-galactose-4-epime 30.0 72 0.0016 27.9 4.0 26 45-73 1-26 (338)
343 PRK07453 protochlorophyllide o 29.9 3.8E+02 0.0082 23.4 9.5 33 44-81 6-38 (322)
344 PLN02207 UDP-glycosyltransfera 29.8 82 0.0018 30.1 4.5 36 45-81 4-42 (468)
345 PRK10586 putative oxidoreducta 29.7 4.4E+02 0.0096 24.1 10.2 36 144-184 85-120 (362)
346 cd00860 ThrRS_anticodon ThrRS 29.7 96 0.0021 21.4 3.9 30 44-73 1-30 (91)
347 PLN02206 UDP-glucuronate decar 29.6 84 0.0018 29.6 4.6 29 42-73 117-145 (442)
348 TIGR01768 GGGP-family geranylg 29.6 3.7E+02 0.008 23.2 8.9 40 45-85 28-68 (223)
349 PRK09267 flavodoxin FldA; Vali 29.5 60 0.0013 25.9 3.1 25 45-69 2-28 (169)
350 cd06182 CYPOR_like NADPH cytoc 29.3 1.5E+02 0.0033 25.7 5.8 21 47-69 119-139 (267)
351 PTZ00319 NADH-cytochrome B5 re 29.2 1E+02 0.0022 27.3 4.8 23 46-70 168-191 (300)
352 cd01149 HutB Hemin binding pro 29.2 95 0.0021 25.8 4.4 38 139-182 52-89 (235)
353 cd06198 FNR_like_3 NAD(P) bind 29.1 1.4E+02 0.003 24.5 5.4 25 45-71 96-121 (216)
354 COG0496 SurE Predicted acid ph 29.0 97 0.0021 27.3 4.5 118 45-184 1-127 (252)
355 PRK15204 undecaprenyl-phosphat 28.9 2.7E+02 0.0059 26.5 7.9 51 9-65 116-166 (476)
356 PLN00141 Tic62-NAD(P)-related 28.9 94 0.002 26.2 4.4 28 43-73 16-43 (251)
357 TIGR01011 rpsB_bact ribosomal 28.8 3.7E+02 0.0081 23.0 9.5 35 145-185 155-190 (225)
358 PRK06153 hypothetical protein; 28.7 37 0.00081 31.8 2.0 22 43-64 175-198 (393)
359 PRK05565 fabG 3-ketoacyl-(acyl 28.6 3.2E+02 0.007 22.2 9.5 30 45-79 6-35 (247)
360 PRK06194 hypothetical protein; 28.5 3.6E+02 0.0079 22.8 10.3 32 45-81 7-38 (287)
361 PRK10964 ADP-heptose:LPS hepto 28.5 2.8E+02 0.006 24.4 7.5 37 45-81 1-38 (322)
362 cd06208 CYPOR_like_FNR These f 28.4 1.6E+02 0.0034 25.7 5.8 21 47-69 139-159 (286)
363 TIGR01472 gmd GDP-mannose 4,6- 28.3 4.1E+02 0.0089 23.3 8.6 17 141-157 74-90 (343)
364 PRK09814 beta-1,6-galactofuran 28.1 1.8E+02 0.0038 25.9 6.2 72 140-216 58-138 (333)
365 PRK08589 short chain dehydroge 28.1 3.7E+02 0.008 22.7 9.6 33 45-82 7-39 (272)
366 PF15202 Adipogenin: Adipogeni 28.0 97 0.0021 21.9 3.4 22 7-28 19-40 (81)
367 PF09651 Cas_APE2256: CRISPR-a 28.0 2.9E+02 0.0064 21.6 12.2 33 148-184 95-128 (136)
368 PRK12743 oxidoreductase; Provi 28.0 3.5E+02 0.0077 22.5 10.3 31 46-81 4-34 (256)
369 PF02844 GARS_N: Phosphoribosy 28.0 1.5E+02 0.0032 22.3 4.8 37 45-85 1-37 (100)
370 cd08196 DHQS-like1 Dehydroquin 28.0 1.6E+02 0.0034 27.0 5.9 45 133-180 61-108 (346)
371 PF00230 MIP: Major intrinsic 27.9 23 0.00051 29.8 0.5 18 52-69 68-85 (227)
372 cd01972 Nitrogenase_VnfE_like 27.9 1.1E+02 0.0024 28.5 5.0 51 135-194 363-413 (426)
373 TIGR03466 HpnA hopanoid-associ 27.7 84 0.0018 27.1 4.0 26 45-73 1-26 (328)
374 PF05568 ASFV_J13L: African sw 27.6 81 0.0018 25.7 3.4 16 147-162 126-141 (189)
375 PRK13394 3-hydroxybutyrate deh 27.6 1.6E+02 0.0034 24.5 5.5 32 45-81 8-39 (262)
376 PRK13512 coenzyme A disulfide 27.5 76 0.0016 29.5 3.8 14 45-58 2-16 (438)
377 CHL00067 rps2 ribosomal protei 27.4 4E+02 0.0086 22.9 9.7 35 145-185 161-196 (230)
378 PF04493 Endonuclease_5: Endon 27.4 87 0.0019 26.6 3.8 46 131-180 76-123 (206)
379 PRK07677 short chain dehydroge 27.3 1.2E+02 0.0026 25.3 4.7 32 45-81 2-33 (252)
380 COG1350 Predicted alternative 27.2 1.1E+02 0.0024 28.5 4.6 55 143-205 252-312 (432)
381 PRK08264 short chain dehydroge 27.2 1.1E+02 0.0025 25.0 4.5 34 44-81 6-39 (238)
382 TIGR01832 kduD 2-deoxy-D-gluco 27.1 95 0.0021 25.7 4.1 33 44-81 5-37 (248)
383 PRK11872 antC anthranilate dio 26.9 1.2E+02 0.0025 27.4 4.8 36 45-82 210-247 (340)
384 PRK06523 short chain dehydroge 26.9 1E+02 0.0022 25.8 4.2 27 44-73 9-35 (260)
385 PRK05993 short chain dehydroge 26.9 3.9E+02 0.0085 22.6 8.5 31 46-81 6-36 (277)
386 TIGR01755 flav_wrbA NAD(P)H:qu 26.8 1E+02 0.0023 25.5 4.2 35 45-79 1-38 (197)
387 PF01380 SIS: SIS domain SIS d 26.8 1.2E+02 0.0025 22.5 4.1 35 44-79 53-87 (131)
388 PRK08309 short chain dehydroge 26.7 1E+02 0.0023 25.2 4.1 31 45-81 1-31 (177)
389 PLN02989 cinnamyl-alcohol dehy 26.7 1.3E+02 0.0027 26.3 5.0 29 42-73 3-31 (325)
390 PRK12828 short chain dehydroge 26.7 1.5E+02 0.0032 24.1 5.1 32 45-81 8-39 (239)
391 TIGR02095 glgA glycogen/starch 26.6 5.2E+02 0.011 24.0 11.9 36 143-184 126-164 (473)
392 cd08199 EEVS 2-epi-5-epi-valio 26.6 1.6E+02 0.0034 27.0 5.7 45 135-182 74-122 (354)
393 PRK14106 murD UDP-N-acetylmura 26.4 5.1E+02 0.011 23.8 9.9 26 44-73 5-30 (450)
394 PF00676 E1_dh: Dehydrogenase 26.4 4.6E+02 0.01 23.3 8.7 35 44-82 124-161 (300)
395 PRK01077 cobyrinic acid a,c-di 26.4 4.6E+02 0.0099 24.7 8.9 41 45-86 3-46 (451)
396 COG1091 RfbD dTDP-4-dehydrorha 26.2 57 0.0012 29.2 2.6 45 138-185 43-103 (281)
397 PF04989 CmcI: Cephalosporin h 26.1 1.2E+02 0.0027 25.8 4.5 44 139-183 26-69 (206)
398 PRK08277 D-mannonate oxidoredu 26.1 1.4E+02 0.0031 25.3 5.0 33 44-81 10-42 (278)
399 cd02070 corrinoid_protein_B12- 26.1 3.8E+02 0.0082 22.1 8.9 36 44-81 82-118 (201)
400 cd05013 SIS_RpiR RpiR-like pro 26.0 1.1E+02 0.0025 22.5 4.0 35 45-81 61-95 (139)
401 cd06215 FNR_iron_sulfur_bindin 25.9 1E+02 0.0022 25.5 4.0 23 47-71 107-129 (231)
402 TIGR01369 CPSaseII_lrg carbamo 25.8 3.5E+02 0.0077 28.6 8.7 31 43-73 553-590 (1050)
403 PRK12937 short chain dehydroge 25.8 3.7E+02 0.0079 21.9 9.1 27 44-73 5-31 (245)
404 PRK06114 short chain dehydroge 25.7 1.6E+02 0.0034 24.6 5.2 32 45-81 9-40 (254)
405 PF08030 NAD_binding_6: Ferric 25.6 74 0.0016 24.6 2.9 19 47-67 5-23 (156)
406 TIGR01357 aroB 3-dehydroquinat 25.6 1.6E+02 0.0035 26.4 5.6 44 136-182 69-115 (344)
407 PF01784 NIF3: NIF3 (NGG1p int 25.5 78 0.0017 27.2 3.3 31 45-83 171-201 (241)
408 PRK06182 short chain dehydroge 25.5 1.2E+02 0.0025 25.7 4.4 31 45-80 4-34 (273)
409 cd06217 FNR_iron_sulfur_bindin 25.5 1.5E+02 0.0032 24.6 4.9 25 45-71 108-133 (235)
410 cd03818 GT1_ExpC_like This fam 25.4 4.9E+02 0.011 23.3 10.4 24 133-156 73-98 (396)
411 KOG1431 GDP-L-fucose synthetas 25.4 1.4E+02 0.003 26.5 4.7 47 45-94 2-48 (315)
412 PRK10799 metal-binding protein 25.3 1.2E+02 0.0026 26.2 4.4 34 44-85 165-198 (247)
413 PF04392 ABC_sub_bind: ABC tra 25.3 57 0.0012 28.5 2.4 36 139-182 53-89 (294)
414 cd06186 NOX_Duox_like_FAD_NADP 25.1 1E+02 0.0023 25.0 3.9 24 45-70 107-131 (210)
415 TIGR03224 benzo_boxA benzoyl-C 25.1 1.6E+02 0.0035 27.4 5.6 38 45-84 268-310 (411)
416 PLN02285 methionyl-tRNA formyl 25.0 4.4E+02 0.0096 23.9 8.3 22 140-161 88-109 (334)
417 cd06361 PBP1_GPC6A_like Ligand 25.0 5.4E+02 0.012 23.6 12.8 111 57-184 157-270 (403)
418 TIGR02201 heptsyl_trn_III lipo 25.0 4.8E+02 0.01 23.0 10.4 102 46-172 1-104 (344)
419 KOG0223 Aquaporin (major intri 25.0 36 0.00078 29.7 1.1 18 52-69 65-82 (238)
420 PRK06179 short chain dehydroge 24.9 1.2E+02 0.0026 25.5 4.4 26 45-73 5-30 (270)
421 PRK05653 fabG 3-ketoacyl-(acyl 24.9 1.7E+02 0.0037 23.7 5.2 32 45-81 6-37 (246)
422 PLN03049 pyridoxine (pyridoxam 24.8 1.3E+02 0.0029 28.7 5.0 39 45-83 60-98 (462)
423 PRK00346 surE 5'(3')-nucleotid 24.6 1E+02 0.0023 27.0 3.9 116 45-182 1-124 (250)
424 PRK07023 short chain dehydroge 24.5 1.2E+02 0.0026 25.0 4.3 26 45-73 2-27 (243)
425 TIGR02160 PA_CoA_Oxy5 phenylac 24.5 1.8E+02 0.0039 26.1 5.6 22 47-70 113-134 (352)
426 PF00574 CLP_protease: Clp pro 24.2 1.5E+02 0.0032 23.9 4.6 41 44-85 48-88 (182)
427 PRK07806 short chain dehydroge 24.2 1.3E+02 0.0029 24.7 4.5 33 44-81 6-38 (248)
428 PRK13900 type IV secretion sys 24.2 2.8E+02 0.0061 25.1 6.8 35 44-81 160-195 (332)
429 TIGR01420 pilT_fam pilus retra 24.1 2.3E+02 0.005 25.6 6.2 25 45-69 123-148 (343)
430 PRK14021 bifunctional shikimat 24.1 1.4E+02 0.003 29.0 5.1 35 145-182 269-303 (542)
431 PF06024 DUF912: Nucleopolyhed 24.1 55 0.0012 24.5 1.8 22 3-24 60-81 (101)
432 TIGR02525 plasmid_TraJ plasmid 24.0 3.1E+02 0.0067 25.4 7.1 24 46-69 151-175 (372)
433 PF01975 SurE: Survival protei 23.9 3.7E+02 0.008 22.5 7.0 50 132-184 77-135 (196)
434 PRK06703 flavodoxin; Provision 23.9 1.5E+02 0.0032 23.1 4.4 29 45-73 2-32 (151)
435 PRK10319 N-acetylmuramoyl-l-al 23.8 5.2E+02 0.011 23.0 8.7 38 45-84 56-110 (287)
436 PF08288 PIGA: PIGA (GPI ancho 23.7 3.1E+02 0.0068 20.4 6.4 44 134-182 39-83 (90)
437 PRK07067 sorbitol dehydrogenas 23.5 4.3E+02 0.0092 21.9 9.3 31 45-80 7-37 (257)
438 KOG1210 Predicted 3-ketosphing 23.5 4.7E+02 0.01 24.0 7.9 33 45-82 34-66 (331)
439 TIGR03405 Phn_Fe-ADH phosphona 23.4 88 0.0019 28.4 3.4 28 134-161 67-96 (355)
440 PF02571 CbiJ: Precorrin-6x re 23.4 1.2E+02 0.0026 26.5 4.0 24 45-72 1-24 (249)
441 PRK08213 gluconate 5-dehydroge 23.3 4.3E+02 0.0094 21.9 8.8 32 45-81 13-44 (259)
442 PF08659 KR: KR domain; Inter 23.2 2.1E+02 0.0046 23.0 5.3 19 138-156 120-138 (181)
443 TIGR02706 P_butyryltrans phosp 23.1 5.3E+02 0.012 22.8 8.6 102 44-174 13-114 (294)
444 PRK08945 putative oxoacyl-(acy 23.0 2E+02 0.0042 23.8 5.2 34 43-81 11-44 (247)
445 PRK06973 nicotinic acid mononu 23.0 2.4E+02 0.0052 24.5 5.8 37 42-82 19-60 (243)
446 PRK03767 NAD(P)H:quinone oxido 22.9 1.1E+02 0.0024 25.2 3.7 35 45-79 2-39 (200)
447 PLN02260 probable rhamnose bio 22.9 1.7E+02 0.0036 28.8 5.5 36 42-80 4-39 (668)
448 cd08174 G1PDH-like Glycerol-1- 22.9 1.4E+02 0.0031 26.7 4.6 34 145-183 75-108 (331)
449 cd02065 B12-binding_like B12 b 22.8 3.1E+02 0.0067 20.0 8.8 27 47-73 3-29 (125)
450 TIGR02529 EutJ ethanolamine ut 22.8 1.1E+02 0.0024 26.2 3.8 38 140-181 189-226 (239)
451 PF02782 FGGY_C: FGGY family o 22.8 2.7E+02 0.0059 22.2 5.9 47 133-183 134-183 (198)
452 cd06201 SiR_like2 Cytochrome p 22.8 2.2E+02 0.0048 25.0 5.7 32 47-82 159-190 (289)
453 COG2268 Uncharacterized protei 22.7 1.1E+02 0.0023 30.1 3.9 61 7-67 11-81 (548)
454 COG2804 PulE Type II secretory 22.7 2.5E+02 0.0055 27.3 6.3 17 134-150 316-332 (500)
455 PRK05420 aquaporin Z; Provisio 22.7 40 0.00087 29.0 0.9 18 52-69 57-74 (231)
456 PF01993 MTD: methylene-5,6,7, 22.6 1.6E+02 0.0036 26.0 4.6 41 139-182 53-94 (276)
457 PRK07856 short chain dehydroge 22.6 1.3E+02 0.0028 25.1 4.0 26 44-72 6-31 (252)
458 cd08195 DHQS Dehydroquinate sy 22.6 2E+02 0.0043 26.0 5.5 47 134-183 71-120 (345)
459 TIGR02015 BchY chlorophyllide 22.6 1.4E+02 0.003 28.1 4.6 46 139-195 349-395 (422)
460 PLN02214 cinnamoyl-CoA reducta 22.5 1.8E+02 0.004 25.8 5.2 28 43-73 9-36 (342)
461 PRK03379 vitamin B12-transport 22.3 1.6E+02 0.0034 25.3 4.6 38 139-182 66-103 (260)
462 cd03791 GT1_Glycogen_synthase_ 22.2 6.2E+02 0.013 23.3 9.9 36 143-184 127-168 (476)
463 PRK12826 3-ketoacyl-(acyl-carr 22.2 2E+02 0.0043 23.5 5.1 34 44-82 6-39 (251)
464 PRK08643 acetoin reductase; Va 22.1 1.9E+02 0.0041 24.0 5.0 31 46-81 4-34 (256)
465 PF07520 SrfB: Virulence facto 22.1 2.1E+02 0.0046 30.2 6.0 67 127-207 751-817 (1002)
466 cd01131 PilT Pilus retraction 22.1 3.1E+02 0.0067 22.5 6.2 24 47-70 4-28 (198)
467 PLN02662 cinnamyl-alcohol dehy 22.0 1.4E+02 0.0029 25.9 4.2 28 43-73 3-30 (322)
468 cd05008 SIS_GlmS_GlmD_1 SIS (S 22.0 1.8E+02 0.0039 21.5 4.4 37 44-81 46-82 (126)
469 PRK08057 cobalt-precorrin-6x r 22.0 1.6E+02 0.0036 25.6 4.6 34 44-83 2-35 (248)
470 PRK06125 short chain dehydroge 22.0 1.9E+02 0.0042 24.1 5.0 33 44-81 7-39 (259)
471 PRK08219 short chain dehydroge 22.0 1.5E+02 0.0033 23.8 4.3 31 45-81 4-34 (227)
472 PRK12745 3-ketoacyl-(acyl-carr 21.8 4.5E+02 0.0098 21.5 10.4 32 46-82 4-35 (256)
473 COG0300 DltE Short-chain dehyd 21.8 5.6E+02 0.012 22.6 9.5 35 43-82 5-39 (265)
474 cd08184 Fe-ADH3 Iron-containin 21.7 96 0.0021 28.3 3.3 28 134-161 67-97 (347)
475 PRK08226 short chain dehydroge 21.7 4.7E+02 0.01 21.7 9.6 34 44-82 6-39 (263)
476 PRK07060 short chain dehydroge 21.7 1.7E+02 0.0037 24.0 4.6 33 44-81 9-41 (245)
477 PRK05447 1-deoxy-D-xylulose 5- 21.7 5E+02 0.011 24.4 8.0 28 45-73 2-29 (385)
478 PRK12746 short chain dehydroge 21.7 4.6E+02 0.0099 21.5 9.2 27 44-73 6-32 (254)
479 PHA03164 hypothetical protein; 21.6 89 0.0019 22.6 2.3 25 5-29 56-80 (88)
480 PLN02846 digalactosyldiacylgly 21.5 4E+02 0.0086 25.5 7.4 25 135-159 106-130 (462)
481 PRK06484 short chain dehydroge 21.4 6.8E+02 0.015 23.4 9.9 32 45-81 6-37 (520)
482 PF01370 Epimerase: NAD depend 21.3 4.4E+02 0.0095 21.2 8.3 17 141-157 61-77 (236)
483 PLN02834 3-dehydroquinate synt 21.3 2.2E+02 0.0047 27.0 5.6 46 134-182 149-197 (433)
484 PLN00184 aquaporin NIP1; Provi 21.2 49 0.0011 29.8 1.2 17 53-69 109-125 (296)
485 PF06415 iPGM_N: BPG-independe 21.1 1.8E+02 0.004 25.1 4.7 38 42-80 27-67 (223)
486 PRK00002 aroB 3-dehydroquinate 21.1 2.1E+02 0.0045 26.0 5.4 46 135-183 79-127 (358)
487 PRK06200 2,3-dihydroxy-2,3-dih 21.1 4.9E+02 0.011 21.6 9.0 32 45-81 7-38 (263)
488 COG0740 ClpP Protease subunit 21.1 1.3E+02 0.0028 25.6 3.7 38 48-85 62-99 (200)
489 cd04743 NPD_PKS 2-Nitropropane 21.0 3.7E+02 0.008 24.5 6.8 62 136-212 73-134 (320)
490 KOG4417 Predicted endonuclease 21.0 71 0.0015 27.7 2.1 38 143-183 113-152 (261)
491 PRK12778 putative bifunctional 21.0 1.7E+02 0.0036 29.5 5.0 36 45-83 99-135 (752)
492 cd01078 NAD_bind_H4MPT_DH NADP 20.9 1.8E+02 0.004 23.5 4.6 34 43-81 27-60 (194)
493 PRK05875 short chain dehydroge 20.9 2E+02 0.0043 24.2 4.9 33 44-81 7-39 (276)
494 PTZ00016 aquaglyceroporin; Pro 20.8 49 0.0011 29.6 1.1 18 52-69 104-121 (294)
495 PLN02650 dihydroflavonol-4-red 20.8 1.8E+02 0.004 25.7 4.9 28 43-73 4-31 (351)
496 PRK06198 short chain dehydroge 20.7 2.2E+02 0.0048 23.6 5.1 34 44-81 6-39 (260)
497 PLN02778 3,5-epimerase/4-reduc 20.7 74 0.0016 27.9 2.2 28 43-73 8-35 (298)
498 PLN02240 UDP-glucose 4-epimera 20.5 1.4E+02 0.003 26.3 4.0 27 44-73 5-31 (352)
499 TIGR03022 WbaP_sugtrans Undeca 20.4 3.8E+02 0.0082 25.0 7.1 18 48-65 128-145 (456)
500 PRK10217 dTDP-glucose 4,6-dehy 20.4 1.7E+02 0.0036 25.9 4.5 31 45-79 2-32 (355)
No 1
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=100.00 E-value=5.1e-48 Score=316.36 Aligned_cols=199 Identities=50% Similarity=0.809 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCCCCCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhh
Q 027253 17 TSVAIFLIRLLHVLYLTGKSRRLKSPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDS 96 (226)
Q Consensus 17 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~ 96 (226)
..+.++++|++++..+.-++. .++++.+++++.||||||.||+++.+.+++ .|+++.|+.+++|+||++++..+|.+
T Consensus 13 ~~~~li~~~v~~~~~~~~k~~--Pk~~s~~~lVvlGSGGHT~EMlrLl~~l~~-~y~~r~yI~a~tD~mS~~k~~~F~~~ 89 (211)
T KOG3339|consen 13 YVIVLIALLVFRHTQRSTKKD--PKDKSLSTLVVLGSGGHTGEMLRLLEALQD-LYSPRSYIAADTDEMSEQKARSFELS 89 (211)
T ss_pred HHHHHHHHHHHHHHHhccCCC--CcCCcceEEEEEcCCCcHHHHHHHHHHHHh-hcCceEEEEecCchhhHHHHHhhhcc
Confidence 456666677766655443333 223679999999999999999999999965 68889999999999999999999877
Q ss_pred hhhhcccCCcceEEEEeecCccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccce
Q 027253 97 LLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSS 176 (226)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~ 176 (226)
+.+. +...+.+||+|+++|+|+++++++++++++|+.++.|.|||+|++|||++|+|+|+++++.+++|..+..
T Consensus 90 ~a~~------~a~~~~ipRsReVgQS~ltSv~Tti~all~s~~lv~RirPdlil~NGPGTCv~i~~~a~l~~iL~~~~~~ 163 (211)
T KOG3339|consen 90 LAHC------KAKNYEIPRSREVGQSWLTSVFTTIWALLQSFVLVWRIRPDLILCNGPGTCVPICLSAYLMEILGLKSSH 163 (211)
T ss_pred cccc------chhheecchhhhhhhhhhhhHHHHHHHHHHHheEEEecCCCEEEECCCCcEeHHHHHHHHHHHhCcCceE
Confidence 6542 2345569999999999999999999999999999999999999999999999999999999999988889
Q ss_pred EEEEccCCccCCcchhhhhhcccCCccEEEeechhhhhhCCCceEEeccC
Q 027253 177 IFYVESIARVKRLSLSGLLLYKLCIADQFFVQWPQLQRKYPRAHYVGCLM 226 (226)
Q Consensus 177 iv~~Esnarv~~~sltgKll~~~~~ad~~~vq~e~~~~~~p~a~y~G~l~ 226 (226)
++|+||.|||++||+|||+| .+++|.|+||||+++++|++++|.|.++
T Consensus 164 IvyvES~cRV~tlSlsGkiL--~~~~d~Fivqw~~L~~ky~~~~~~g~iv 211 (211)
T KOG3339|consen 164 IVYVESICRVKTLSLSGKIL--YPVVDLFIVQWPALATKYLRVKYFGIIV 211 (211)
T ss_pred EEEEeeeeEeeccccCceee--hhHHHHHHHhhHHHHHhcccceeeeecC
Confidence 99999999999999999999 7899999999999999999999999874
No 2
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=100.00 E-value=2.2e-47 Score=315.04 Aligned_cols=170 Identities=52% Similarity=0.871 Sum_probs=156.3
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHH
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTS 126 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~ 126 (226)
||+++|+|||+.||+++++.++.+.++++.|+++.+|..|..++.++|++... ...+..+||.|.++|++.++
T Consensus 1 Il~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~-------~~~~~~~~r~r~v~q~~~~~ 73 (170)
T PF08660_consen 1 ILVVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSK-------RHKILEIPRAREVGQSYLTS 73 (170)
T ss_pred CEEEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccc-------cceeeccceEEEechhhHhh
Confidence 58899999999999999999966666778999999999999999888876432 12678899999999999999
Q ss_pred HHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccEEE
Q 027253 127 VWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQFF 206 (226)
Q Consensus 127 ~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~ 206 (226)
++++++++++|+++++++|||+||+|||++|+|+|+++.+.+++++.++|+||+||+||+++||+|||++ +++||+|+
T Consensus 74 ~~~~l~~~~~~~~il~r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~aRv~~lSlTGkll--y~~aD~f~ 151 (170)
T PF08660_consen 74 IFTTLRAFLQSLRILRRERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESFARVKTLSLTGKLL--YPFADRFI 151 (170)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEeeeecCCCchHHHHH--HHhCCEEE
Confidence 9999999999999999999999999999999999999877777777778999999999999999999999 77999999
Q ss_pred eechhhhhhCCCceEEecc
Q 027253 207 VQWPQLQRKYPRAHYVGCL 225 (226)
Q Consensus 207 vq~e~~~~~~p~a~y~G~l 225 (226)
|||||+++.|||++|.|.|
T Consensus 152 VQW~~l~~~yp~a~y~G~l 170 (170)
T PF08660_consen 152 VQWEELAEKYPRAIYVGRL 170 (170)
T ss_pred EcCHHHHhHCCCCEEEeeC
Confidence 9999999999999999986
No 3
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.97 E-value=6.4e-30 Score=232.33 Aligned_cols=154 Identities=16% Similarity=0.284 Sum_probs=128.9
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEee---cCccccc
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIY---RSREVGQ 121 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~---r~r~~~~ 121 (226)
|++++ ||||||++|+++++++|+++++ +++++++.+++|.+.+ +++ ++++..++ ..|....
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~--~v~~vg~~~~~e~~l~--------~~~-----g~~~~~~~~~~l~~~~~~ 67 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNW--DISYIGSHQGIEKTII--------EKE-----NIPYYSISSGKLRRYFDL 67 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCC--EEEEEECCCccccccC--------ccc-----CCcEEEEeccCcCCCchH
Confidence 67888 9999999999999999998664 5888899988865444 332 24555553 2233335
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCC
Q 027253 122 SYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCI 201 (226)
Q Consensus 122 ~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ 201 (226)
.++.+++++++++++++++++++|||+|+|+|||+|+|+++| |+++|+ |+++||||+ .||++||++ +++
T Consensus 68 ~~~~~~~~~~~~~~~~~~i~~~~kPdvvi~~Ggy~s~p~~~a---a~~~~~---p~~i~e~n~---~~g~~nr~~--~~~ 136 (352)
T PRK12446 68 KNIKDPFLVMKGVMDAYVRIRKLKPDVIFSKGGFVSVPVVIG---GWLNRV---PVLLHESDM---TPGLANKIA--LRF 136 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCchhhHHHHHH---HHHcCC---CEEEECCCC---CccHHHHHH--HHh
Confidence 678899999999999999999999999999999999999977 688998 999999998 599999999 889
Q ss_pred ccEEEeechhhhhhCC--CceEEecc
Q 027253 202 ADQFFVQWPQLQRKYP--RAHYVGCL 225 (226)
Q Consensus 202 ad~~~vq~e~~~~~~p--~a~y~G~l 225 (226)
||+++++||+..+.+| +..++|+-
T Consensus 137 a~~v~~~f~~~~~~~~~~k~~~tG~P 162 (352)
T PRK12446 137 ASKIFVTFEEAAKHLPKEKVIYTGSP 162 (352)
T ss_pred hCEEEEEccchhhhCCCCCeEEECCc
Confidence 9999999999888886 46788974
No 4
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.96 E-value=6.7e-29 Score=226.22 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=130.1
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEee---cCcccc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIY---RSREVG 120 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~---r~r~~~ 120 (226)
++++++ ||||||++|+++++++|.+++++ .+.++++.+++|....++. .+.++.++ ..|...
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~-~v~~~~~~~~~e~~l~~~~-------------~~~~~~I~~~~~~~~~~ 66 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWE-QVIVLGTGDGLEAFLVKQY-------------GIEFELIPSGGLRRKGS 66 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCcc-EEEEecccccceeeecccc-------------CceEEEEecccccccCc
Confidence 356666 99999999999999999999987 7888899999966554332 24455553 233334
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccC
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLC 200 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~ 200 (226)
..+++.+++++++.+++.++++++|||+|+|||||+|+|+++| ++++|+ |+++||||++ ||++||++ ++
T Consensus 67 ~~~~~~~~~~~~~~~~a~~il~~~kPd~vig~Ggyvs~P~~~A---a~~~~i---Pv~ihEqn~~---~G~ank~~--~~ 135 (357)
T COG0707 67 LKLLKAPFKLLKGVLQARKILKKLKPDVVIGTGGYVSGPVGIA---AKLLGI---PVIIHEQNAV---PGLANKIL--SK 135 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecCCccccHHHHH---HHhCCC---CEEEEecCCC---cchhHHHh--HH
Confidence 5578899999999999999999999999999999999999987 688999 9999999995 99999999 88
Q ss_pred CccEEEeechhhhhhCC--CceEEec
Q 027253 201 IADQFFVQWPQLQRKYP--RAHYVGC 224 (226)
Q Consensus 201 ~ad~~~vq~e~~~~~~p--~a~y~G~ 224 (226)
+|+.++++|+++...++ +..++|+
T Consensus 136 ~a~~V~~~f~~~~~~~~~~~~~~tG~ 161 (357)
T COG0707 136 FAKKVASAFPKLEAGVKPENVVVTGI 161 (357)
T ss_pred hhceeeeccccccccCCCCceEEecC
Confidence 99999999998666655 4788886
No 5
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.79 E-value=1.4e-19 Score=166.23 Aligned_cols=151 Identities=14% Similarity=0.089 Sum_probs=114.6
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC-CcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT-DNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~-d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
.||+++ ||||||++|+ +++++|++++.+ +.++|.+ +.++..-+ | ..+++..++-..- ..
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~--~~~~g~gg~~m~~~g~---~-----------~~~~~~~l~v~G~--~~ 66 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPN--ARFIGVAGPRMAAEGC---E-----------VLYSMEELSVMGL--RE 66 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCC--cEEEEEccHHHHhCcC---c-----------cccChHHhhhccH--HH
Confidence 478887 9999999999 999999976654 5555655 34422211 0 0133333332210 12
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEE---ccCCccCCcchhhhhhccc
Q 027253 123 YVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYV---ESIARVKRLSLSGLLLYKL 199 (226)
Q Consensus 123 ~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~---Esnarv~~~sltgKll~~~ 199 (226)
.+..++++++.+.++.++++++|||+||++| |+|+|+.++ ..++.+|+ |+++| |+|+. .+.+||.+ +
T Consensus 67 ~l~~~~~~~~~~~~~~~~l~~~kPd~vi~~g-~~~~~~~~a-~aa~~~gi---p~v~~i~P~~waw---~~~~~r~l--~ 136 (385)
T TIGR00215 67 VLGRLGRLLKIRKEVVQLAKQAKPDLLVGID-APDFNLTKE-LKKKDPGI---KIIYYISPQVWAW---RKWRAKKI--E 136 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCEEEEeC-CCCccHHHH-HHHhhCCC---CEEEEeCCcHhhc---CcchHHHH--H
Confidence 5667888889999999999999999999999 699998874 35788999 99999 99995 78899999 8
Q ss_pred CCccEEEeechhhhhhCC----CceEEec
Q 027253 200 CIADQFFVQWPQLQRKYP----RAHYVGC 224 (226)
Q Consensus 200 ~~ad~~~vq~e~~~~~~p----~a~y~G~ 224 (226)
+++|.+++.||+..+.|+ ++.++|+
T Consensus 137 ~~~d~v~~~~~~e~~~~~~~g~~~~~vGn 165 (385)
T TIGR00215 137 KATDFLLAILPFEKAFYQKKNVPCRFVGH 165 (385)
T ss_pred HHHhHhhccCCCcHHHHHhcCCCEEEECC
Confidence 899999999998877663 4678885
No 6
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.65 E-value=4.6e-16 Score=140.71 Aligned_cols=155 Identities=14% Similarity=0.059 Sum_probs=108.8
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
+|||+++ ||||||++|++ ++++|++.+++..++.++. ..++.+.++. .++++.++-..- ..
T Consensus 1 ~~ki~i~~Ggt~G~i~~a~-l~~~L~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~~l~~~g~--~~ 62 (380)
T PRK00025 1 PLRIAIVAGEVSGDLLGAG-LIRALKARAPNLEFVGVGG-PRMQAAGCES--------------LFDMEELAVMGL--VE 62 (380)
T ss_pred CceEEEEecCcCHHHHHHH-HHHHHHhcCCCcEEEEEcc-HHHHhCCCcc--------------ccCHHHhhhccH--HH
Confidence 4799999 99999999999 9999997655544444333 3453322210 122222322111 23
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCcc-CCcchhhhhhcccCC
Q 027253 123 YVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARV-KRLSLSGLLLYKLCI 201 (226)
Q Consensus 123 ~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv-~~~sltgKll~~~~~ 201 (226)
.+..+++++.++.+..+++++++||+|+++| +.+++..++ ..++..|+ |+++||++... ..+++++++ .+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~l~~~kPdivi~~~-~~~~~~~~a-~~a~~~~i---p~i~~~~~~~~~~~~~~~~~~---~~~ 134 (380)
T PRK00025 63 VLPRLPRLLKIRRRLKRRLLAEPPDVFIGID-APDFNLRLE-KKLRKAGI---PTIHYVSPSVWAWRQGRAFKI---AKA 134 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEeC-CCCCCHHHH-HHHHHCCC---CEEEEeCCchhhcCchHHHHH---HHH
Confidence 5667788889999999999999999999998 777777655 34577798 99999997510 137777775 468
Q ss_pred ccEEEeechhhhhhCC----CceEEec
Q 027253 202 ADQFFVQWPQLQRKYP----RAHYVGC 224 (226)
Q Consensus 202 ad~~~vq~e~~~~~~p----~a~y~G~ 224 (226)
+|.+++++++..+++. +..++|+
T Consensus 135 ~d~i~~~~~~~~~~~~~~g~~~~~~G~ 161 (380)
T PRK00025 135 TDHVLALFPFEAAFYDKLGVPVTFVGH 161 (380)
T ss_pred HhhheeCCccCHHHHHhcCCCeEEECc
Confidence 9999999998777653 2567775
No 7
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.61 E-value=1.2e-15 Score=140.96 Aligned_cols=146 Identities=13% Similarity=0.005 Sum_probs=113.8
Q ss_pred ChhhH--HHHHHHHHHhhhcCCCCeEE---EEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEee---cCccccchhH
Q 027253 53 SGGHT--AEMMNLLSVLQMDRFTPRFY---IAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIY---RSREVGQSYV 124 (226)
Q Consensus 53 tGGH~--~p~lal~~~l~~~~~~~~~~---~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~---r~r~~~~~~~ 124 (226)
|.||= .-+++|+++|+++..+..+. ++|+++++|.+.++. .| ++..+| ..|.....++
T Consensus 4 snghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~--------~g------~~~~~~sgg~~~~~~~~~~ 69 (396)
T TIGR03492 4 SNGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPI--------IG------PTKELPSGGFSYQSLRGLL 69 (396)
T ss_pred CCCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCce--------eC------CCCCCCCCCccCCCHHHHH
Confidence 34564 34688999998743334688 889998885554432 21 344444 2233346788
Q ss_pred HHHHH-HHHHHHHHHHhhHhc--CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE---EccCCccCC----------
Q 027253 125 TSVWT-TLLATTHALWLMVKI--RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY---VESIARVKR---------- 188 (226)
Q Consensus 125 ~~~~~-~l~~~~~a~~il~k~--kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~---~Esnarv~~---------- 188 (226)
+.+++ ++++++++++++++. |||+|+++|+|+ +++| |++.|+ |+++ ||||+ +
T Consensus 70 ~~~~~gl~~~~~~~~~~~~~~~~~p~~v~~~Gg~v---~~~a---A~~~~~---p~~~~~~~esn~---~~~~~~~~~~~ 137 (396)
T TIGR03492 70 RDLRAGLVGLTLGQWRALRKWAKKGDLIVAVGDIV---PLLF---AWLSGK---PYAFVGTAKSDY---YWESGPRRSPS 137 (396)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcCCEEEEECcHH---HHHH---HHHcCC---CceEEEeeccce---eecCCCCCccc
Confidence 89999 999999999999999 999999999998 4444 588898 9999 99998 7
Q ss_pred ------cchh------hhhhcccCCccEEEeechhhhhhCC----CceEEeccC
Q 027253 189 ------LSLS------GLLLYKLCIADQFFVQWPQLQRKYP----RAHYVGCLM 226 (226)
Q Consensus 189 ------~slt------gKll~~~~~ad~~~vq~e~~~~~~p----~a~y~G~l~ 226 (226)
+|++ ||++ +++||++++.+++..+.|+ ++.|+|+-|
T Consensus 138 ~~~~~~~G~~~~p~e~n~l~--~~~a~~v~~~~~~t~~~l~~~g~k~~~vGnPv 189 (396)
T TIGR03492 138 DEYHRLEGSLYLPWERWLMR--SRRCLAVFVRDRLTARDLRRQGVRASYLGNPM 189 (396)
T ss_pred hhhhccCCCccCHHHHHHhh--chhhCEEeCCCHHHHHHHHHCCCeEEEeCcCH
Confidence 9999 9999 8899999999999888774 578999743
No 8
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.61 E-value=2.2e-14 Score=127.65 Aligned_cols=154 Identities=21% Similarity=0.277 Sum_probs=112.5
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecC---ccccc
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS---REVGQ 121 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~---r~~~~ 121 (226)
||+++ ||+|||...++.+++.|.+++++ +.+++..++.+.... +. .+++++.++.. +....
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~e--v~v~~~~~~~~~~~~--------~~-----~~~~~~~~~~~~~~~~~~~ 65 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAE--VLFLGTKRGLEARLV--------PK-----AGIPLHTIPVGGLRRKGSL 65 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCE--EEEEECCCcchhhcc--------cc-----cCCceEEEEecCcCCCChH
Confidence 57888 99999999999999999988876 445554444322111 10 12444444422 22224
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCC
Q 027253 122 SYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCI 201 (226)
Q Consensus 122 ~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ 201 (226)
..+.+++..++++.+..+++++++||+|+++++.++++..++ ++..++ |++++|++.. ++..++++ +++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~---a~~~~~---p~v~~~~~~~---~~~~~~~~--~~~ 134 (350)
T cd03785 66 KKLKAPFKLLKGVLQARKILKKFKPDVVVGFGGYVSGPVGLA---AKLLGI---PLVIHEQNAV---PGLANRLL--ARF 134 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCcchHHHHH---HHHhCC---CEEEEcCCCC---ccHHHHHH--HHh
Confidence 456667777888888889999999999999999888776644 678888 9999999875 78999999 679
Q ss_pred ccEEEeechhhhhhCC--CceEEecc
Q 027253 202 ADQFFVQWPQLQRKYP--RAHYVGCL 225 (226)
Q Consensus 202 ad~~~vq~e~~~~~~p--~a~y~G~l 225 (226)
+|.+++.+++..+.++ +..+.|+-
T Consensus 135 ~~~vi~~s~~~~~~~~~~~~~~i~n~ 160 (350)
T cd03785 135 ADRVALSFPETAKYFPKDKAVVTGNP 160 (350)
T ss_pred hCEEEEcchhhhhcCCCCcEEEECCC
Confidence 9999999999877543 45666763
No 9
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.55 E-value=1.1e-13 Score=123.11 Aligned_cols=153 Identities=20% Similarity=0.267 Sum_probs=108.2
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCc---ccc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSR---EVG 120 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r---~~~ 120 (226)
||++++ ||+|||+..+..++++|.+++++ +.+++..++.+.. +..+ .+++++.++..+ ...
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~e--V~vv~~~~~~~~~--------~~~~-----~g~~~~~i~~~~~~~~~~ 65 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVE--VLWLGTKRGLEKR--------LVPK-----AGIEFYFIPVGGLRRKGS 65 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCE--EEEEeCCCcchhc--------cccc-----CCCceEEEeccCcCCCCh
Confidence 588888 99999999888999999988865 4444443332111 1011 134555554322 111
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccC
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLC 200 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~ 200 (226)
...+...++.+.++.+..+++++++||+|+++++..+++..++ +++.++ |++++|++.. ++..+|++ ++
T Consensus 66 ~~~l~~~~~~~~~~~~l~~~i~~~~pDvVi~~~~~~~~~~~~~---~~~~~~---p~v~~~~~~~---~~~~~~~~--~~ 134 (348)
T TIGR01133 66 FRLIKTPLKLLKAVFQARRILKKFKPDAVIGFGGYVSGPAGLA---AKLLGI---PLFHHEQNAV---PGLTNKLL--SR 134 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHHH---HHHcCC---CEEEECCCCC---ccHHHHHH--HH
Confidence 2234445566777888888999999999999999888776644 677887 9999998764 78889999 67
Q ss_pred CccEEEeechhhhhhCCCceEEec
Q 027253 201 IADQFFVQWPQLQRKYPRAHYVGC 224 (226)
Q Consensus 201 ~ad~~~vq~e~~~~~~p~a~y~G~ 224 (226)
.+|.+++++++.++++ +..+.|+
T Consensus 135 ~~d~ii~~~~~~~~~~-~~~~i~n 157 (348)
T TIGR01133 135 FAKKVLISFPGAKDHF-EAVLVGN 157 (348)
T ss_pred HhCeeEECchhHhhcC-CceEEcC
Confidence 9999999999988766 3456554
No 10
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.53 E-value=1.6e-13 Score=123.27 Aligned_cols=154 Identities=20% Similarity=0.269 Sum_probs=110.3
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecC---cccc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS---REVG 120 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~---r~~~ 120 (226)
|||+++ +|+|||...++.+++.|++++++ +.+++.+++.+.... + + .+++++.++.. +...
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~e--v~vv~~~~~~~~~~~---~-----~-----~g~~~~~~~~~~~~~~~~ 66 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWE--VLYLGTARGMEARLV---P-----K-----AGIEFHFIPSGGLRRKGS 66 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCE--EEEEECCCchhhhcc---c-----c-----CCCcEEEEeccCcCCCCh
Confidence 789999 78999999999999999988765 455555543321111 1 1 13445555422 2222
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccC
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLC 200 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~ 200 (226)
.+.+..+++.+.++.+..+++++++||+|++.+++.+++.+++ ++..++ |++++|.... ++..+|++ ++
T Consensus 67 ~~~l~~~~~~~~~~~~~~~~ik~~~pDvv~~~~~~~~~~~~~~---~~~~~~---p~v~~~~~~~---~~~~~r~~--~~ 135 (357)
T PRK00726 67 LANLKAPFKLLKGVLQARKILKRFKPDVVVGFGGYVSGPGGLA---ARLLGI---PLVIHEQNAV---PGLANKLL--AR 135 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcchhHHHHH---HHHcCC---CEEEEcCCCC---ccHHHHHH--HH
Confidence 3445556677888888889999999999999999988876644 577787 9999998764 78999999 67
Q ss_pred CccEEEeechhhhhhC--CCceEEec
Q 027253 201 IADQFFVQWPQLQRKY--PRAHYVGC 224 (226)
Q Consensus 201 ~ad~~~vq~e~~~~~~--p~a~y~G~ 224 (226)
.+|.+++++++..... .+..+.|+
T Consensus 136 ~~d~ii~~~~~~~~~~~~~~i~vi~n 161 (357)
T PRK00726 136 FAKKVATAFPGAFPEFFKPKAVVTGN 161 (357)
T ss_pred HhchheECchhhhhccCCCCEEEECC
Confidence 9999999998654222 24556665
No 11
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.24 E-value=8.5e-13 Score=103.40 Aligned_cols=131 Identities=15% Similarity=0.227 Sum_probs=94.3
Q ss_pred EEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecC-c--c--cc
Q 027253 47 TLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS-R--E--VG 120 (226)
Q Consensus 47 iliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~-r--~--~~ 120 (226)
|+++ +||+||++|+++|+++|++++++ +.+ .+....+.. . .+ .++++..++.. + . ..
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~--V~~-~~~~~~~~~--------v-~~-----~Gl~~~~~~~~~~~~~~~~~ 63 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHE--VRL-ATPPDFRER--------V-EA-----AGLEFVPIPGDSRLPRSLEP 63 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-E--EEE-EETGGGHHH--------H-HH-----TT-EEEESSSCGGGGHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCe--EEE-eecccceec--------c-cc-----cCceEEEecCCcCcCcccch
Confidence 4555 99999999999999999999876 333 344344222 1 11 35778887644 1 1 12
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccC
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLC 200 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~ 200 (226)
...+..+.+....+.++.+.+.+.+||.++..|++.+.+++++. ..... +.+.+|++.. |+.++++. .+
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~---~~~~~---~~~vaE~~~i---P~~~~~~~--p~ 132 (139)
T PF03033_consen 64 LANLRRLARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAA---PLAFA---AALVAEQLGI---PGVANRLF--PW 132 (139)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHH---HHHTH---HHHHHHHHTS----EEEEESS--GG
T ss_pred hhhhhhHHHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhh---hhcCc---cceeEhhhCc---hHHHHhhC--Cc
Confidence 34555666666778889999999999999999999999988764 44555 8899999985 99999999 77
Q ss_pred CccEE
Q 027253 201 IADQF 205 (226)
Q Consensus 201 ~ad~~ 205 (226)
+++..
T Consensus 133 ~~~~~ 137 (139)
T PF03033_consen 133 FATRV 137 (139)
T ss_dssp GSTCS
T ss_pred CcCcc
Confidence 77764
No 12
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.20 E-value=2.9e-11 Score=108.15 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=72.4
Q ss_pred EEEEE-ecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEE---Eee-cCccc
Q 027253 46 STLIV-LGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFM---QIY-RSREV 119 (226)
Q Consensus 46 kiliv-~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~---~i~-r~r~~ 119 (226)
||+++ +||| ||++++++++++|++ +++ +.++++++ +...++. .+.+ .+... .+. ..++
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~e--v~~~~~~~--~~~~~~~--------~~~~--~~~~~p~~~~~~~~~~- 64 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYE--VSYIASGR--SKNYISK--------YGFK--VFETFPGIKLKGEDGK- 64 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCe--EEEEEcCC--HHHhhhh--------hcCc--ceeccCCceEeecCCc-
Confidence 57877 9999 999999999999987 765 44445443 3333322 1110 01110 111 1111
Q ss_pred cchhHHHHH---HH-HHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEE-EEccCC
Q 027253 120 GQSYVTSVW---TT-LLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIF-YVESIA 184 (226)
Q Consensus 120 ~~~~~~~~~---~~-l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv-~~Esna 184 (226)
.....+.. .+ ..++.+..+++++++||+||+.|++.+ .+ +|+.+|+ |++ ++||++
T Consensus 65 -~~~~~~l~~~~~~~~~~~~~~~~~l~~~~pDlVi~d~~~~~---~~---aA~~~~i---P~i~i~~q~~ 124 (321)
T TIGR00661 65 -VNIVKTLRNKEYSPKKAIRREINIIREYNPDLIISDFEYST---VV---AAKLLKI---PVICISNQNY 124 (321)
T ss_pred -CcHHHHHHhhccccHHHHHHHHHHHHhcCCCEEEECCchHH---HH---HHHhcCC---CEEEEecchh
Confidence 12333333 22 346778889999999999999999987 33 3799999 998 788885
No 13
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.00 E-value=1.6e-09 Score=98.41 Aligned_cols=153 Identities=14% Similarity=0.193 Sum_probs=90.0
Q ss_pred CCeEEEEE-ecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchh--hH-H-HHhhhhhhh-hcccCCcceEEEEeec
Q 027253 43 QPLSTLIV-LGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSL--QK-A-RVFEDSLLH-KKVIKGSSAQFMQIYR 115 (226)
Q Consensus 43 ~~~kiliv-~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~--~~-~-~~~e~~~~~-~~~~~~~~~~~~~i~r 115 (226)
+.|||+|. +|+| ||...+.+++++|++++++ ++.++..-+..+. .. . ..++..+.. +..+ +..+.....
T Consensus 3 ~~~rili~t~~~G~GH~~~a~al~~~l~~~g~~-~~~~~d~~~~~~~~~~~~~~~~y~~~~~~~~~~~---~~~~~~~~~ 78 (380)
T PRK13609 3 KNPKVLILTAHYGNGHVQVAKTLEQTFRQKGIK-DVIVCDLFGESHPVITEITKYLYLKSYTIGKELY---RLFYYGVEK 78 (380)
T ss_pred CCCeEEEEEcCCCchHHHHHHHHHHHHHhcCCC-cEEEEEhHHhcchHHHHHHHHHHHHHHHHhHHHH---HHHHhccCc
Confidence 45799988 8999 9999999999999987765 4444332221111 01 0 011211110 0000 000100011
Q ss_pred CccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhh
Q 027253 116 SREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLL 195 (226)
Q Consensus 116 ~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKl 195 (226)
.+. ... ..+....+..+..+++++++||+|++++|+.++|.+.+ ++.+++ |++.+-+. .+..+++
T Consensus 79 ~~~--~~~--~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~~~~~~~---~~~~~i---p~~~~~td-----~~~~~~~ 143 (380)
T PRK13609 79 IYD--KKI--FSWYANFGRKRLKLLLQAEKPDIVINTFPIIAVPELKK---QTGISI---PTYNVLTD-----FCLHKIW 143 (380)
T ss_pred ccc--hHH--HHHHHHHHHHHHHHHHHHhCcCEEEEcChHHHHHHHHH---hcCCCC---CeEEEeCC-----CCCCccc
Confidence 110 011 11222334567788999999999999999988876533 344566 87743322 4567889
Q ss_pred hcccCCccEEEeechhhhhhC
Q 027253 196 LYKLCIADQFFVQWPQLQRKY 216 (226)
Q Consensus 196 l~~~~~ad~~~vq~e~~~~~~ 216 (226)
+ ++.+|.+++..++.++.+
T Consensus 144 ~--~~~ad~i~~~s~~~~~~l 162 (380)
T PRK13609 144 V--HREVDRYFVATDHVKKVL 162 (380)
T ss_pred c--cCCCCEEEECCHHHHHHH
Confidence 9 679999999999887653
No 14
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.49 E-value=9e-07 Score=81.39 Aligned_cols=148 Identities=14% Similarity=0.141 Sum_probs=85.4
Q ss_pred CCeEEEEE-ecCh-hhHHHHHHHHHHhhhcCCC-CeEEEEEcCCcch-------hhHHHHhhhhhhhhcccCCcceEEEE
Q 027253 43 QPLSTLIV-LGSG-GHTAEMMNLLSVLQMDRFT-PRFYIAAATDNMS-------LQKARVFEDSLLHKKVIKGSSAQFMQ 112 (226)
Q Consensus 43 ~~~kiliv-~GtG-GH~~p~lal~~~l~~~~~~-~~~~~~~~~d~~s-------~~~~~~~e~~~~~~~~~~~~~~~~~~ 112 (226)
+.|||||. +++| ||..-|-+|.+++++.+.+ ..+.++ |.++ ......|...+..-... +..++
T Consensus 4 ~~~~vlil~~~~G~GH~~aA~al~~~~~~~~~~~~~~~~~---D~~~~~~~~~~~~~~~~Y~~~~~~~p~~-y~~~y--- 76 (391)
T PRK13608 4 QNKKILIITGSFGNGHMQVTQSIVNQLNDMNLDHLSVIEH---DLFMEAHPILTSICKKWYINSFKYFRNM-YKGFY--- 76 (391)
T ss_pred CCceEEEEECCCCchHHHHHHHHHHHHHhhCCCCceEEEe---ehHHhcCchHHHHHHHHHHHHHHHhHHH-HHHHH---
Confidence 34789988 8887 9999999999999865432 233332 2221 11111111111000000 00000
Q ss_pred eecCccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHH-HHHcCCccceEEEEccCCccCCcch
Q 027253 113 IYRSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFL-FKVIGIRWSSIFYVESIARVKRLSL 191 (226)
Q Consensus 113 i~r~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~l-akllgi~~~~iv~~Esnarv~~~sl 191 (226)
+.. ......++....++....+++++++||+|++++|.. . ++... .+.+++ |++.++++. +.
T Consensus 77 --~~~---~~~~~~~~~~~~~~~~l~~~l~~~kPDvVi~~~p~~---~-~~~l~~~~~~~i---P~~~v~td~-----~~ 139 (391)
T PRK13608 77 --YSR---PDKLDKCFYKYYGLNKLINLLIKEKPDLILLTFPTP---V-MSVLTEQFNINI---PVATVMTDY-----RL 139 (391)
T ss_pred --HcC---chhhHHHHHHHHHHHHHHHHHHHhCcCEEEECCcHH---H-HHHHHHhcCCCC---CEEEEeCCC-----Cc
Confidence 000 011222333334556788899999999999997753 2 22111 223465 999999885 34
Q ss_pred hhhhhcccCCccEEEeechhhhhhC
Q 027253 192 SGLLLYKLCIADQFFVQWPQLQRKY 216 (226)
Q Consensus 192 tgKll~~~~~ad~~~vq~e~~~~~~ 216 (226)
.++++ ++.+|.+++.+|++++.+
T Consensus 140 ~~~w~--~~~~d~~~v~s~~~~~~l 162 (391)
T PRK13608 140 HKNWI--TPYSTRYYVATKETKQDF 162 (391)
T ss_pred ccccc--cCCCCEEEECCHHHHHHH
Confidence 56788 789999999999987654
No 15
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.12 E-value=2.5e-05 Score=71.54 Aligned_cols=158 Identities=13% Similarity=0.139 Sum_probs=95.6
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhc-CCCCeEEEEEcCCcchhhH---HHHhhhhhhhhcccCC-cceEEEEeecCccc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMD-RFTPRFYIAAATDNMSLQK---ARVFEDSLLHKKVIKG-SSAQFMQIYRSREV 119 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~-~~~~~~~~~~~~d~~s~~~---~~~~e~~~~~~~~~~~-~~~~~~~i~r~r~~ 119 (226)
|||+++.||=--..=|-.+..+|+++ +++..+.. ++...+.+. ..+.+. .+++. ..+++ .+....
T Consensus 1 ~ki~~v~GtRpe~iklapv~~~l~~~~~~~~~lv~--tGqH~~~~~g~~~~~~~~-----~~~~~~~~~~~-~~~~~~-- 70 (365)
T TIGR03568 1 KKICVVTGTRADYGLLRPLLKALQDDPDLELQLIV--TGMHLSPEYGNTVNEIEK-----DGFDIDEKIEI-LLDSDS-- 70 (365)
T ss_pred CeEEEEEecChhHHHHHHHHHHHhcCCCCcEEEEE--eCCCCChhhccHHHHHHH-----cCCCCCCcccc-ccCCCC--
Confidence 58999988877666666677777654 45534444 333332210 111121 11100 00111 111111
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecC-CCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcch----hhh
Q 027253 120 GQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNG-PGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSL----SGL 194 (226)
Q Consensus 120 ~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tG-g~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sl----tgK 194 (226)
+++.-. .+.+.+.+..+++.+++||+|+..| .+++++.++| |..++| |++.+|..-| +.+. ..+
T Consensus 71 ~~~~~~---~~~~~~~~~~~~~~~~~Pd~vlv~GD~~~~la~ala---A~~~~I---Pv~HveaG~r--s~~~~eE~~r~ 139 (365)
T TIGR03568 71 NAGMAK---SMGLTIIGFSDAFERLKPDLVVVLGDRFEMLAAAIA---AALLNI---PIAHIHGGEV--TEGAIDESIRH 139 (365)
T ss_pred CCCHHH---HHHHHHHHHHHHHHHhCCCEEEEeCCchHHHHHHHH---HHHhCC---cEEEEECCcc--CCCCchHHHHH
Confidence 122222 3345566777889999999999999 9999998877 688899 9998877765 4442 467
Q ss_pred hhcccCCccEEEeechhhhhhC------C-CceEEecc
Q 027253 195 LLYKLCIADQFFVQWPQLQRKY------P-RAHYVGCL 225 (226)
Q Consensus 195 ll~~~~~ad~~~vq~e~~~~~~------p-~a~y~G~l 225 (226)
++ .++||..|+.-++.+++. + +..++|+.
T Consensus 140 ~i--~~la~l~f~~t~~~~~~L~~eg~~~~~i~~tG~~ 175 (365)
T TIGR03568 140 AI--TKLSHLHFVATEEYRQRVIQMGEDPDRVFNVGSP 175 (365)
T ss_pred HH--HHHHhhccCCCHHHHHHHHHcCCCCCcEEEECCc
Confidence 77 779999999888877654 2 34457764
No 16
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.02 E-value=0.00013 Score=66.59 Aligned_cols=133 Identities=14% Similarity=0.150 Sum_probs=91.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
|||.|-.++=-|..---.+.++|+++|++ +++++...+...+.+. . .++++..+-+.+.. ..
T Consensus 1 MkIwiDi~~p~hvhfFk~~I~eL~~~Ghe--V~it~R~~~~~~~LL~--------~-----yg~~y~~iG~~g~~---~~ 62 (335)
T PF04007_consen 1 MKIWIDITHPAHVHFFKNIIRELEKRGHE--VLITARDKDETEELLD--------L-----YGIDYIVIGKHGDS---LY 62 (335)
T ss_pred CeEEEECCCchHHHHHHHHHHHHHhCCCE--EEEEEeccchHHHHHH--------H-----cCCCeEEEcCCCCC---HH
Confidence 78888888888999999999999988865 7777765444333332 2 23566666543321 22
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccE
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQ 204 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~ 204 (226)
.-+...+.-..+-.+++++++||+++|.|+.-+ . ..|..+|+ |.|..-.+- .....||+. .|+||+
T Consensus 63 ~Kl~~~~~R~~~l~~~~~~~~pDv~is~~s~~a---~---~va~~lgi---P~I~f~D~e---~a~~~~~Lt--~Pla~~ 128 (335)
T PF04007_consen 63 GKLLESIERQYKLLKLIKKFKPDVAISFGSPEA---A---RVAFGLGI---PSIVFNDTE---HAIAQNRLT--LPLADV 128 (335)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEEecCcHHH---H---HHHHHhCC---CeEEEecCc---hhhccceee--hhcCCe
Confidence 222333344556677888999999998776422 2 33688898 888887774 356679999 899999
Q ss_pred EEeec
Q 027253 205 FFVQW 209 (226)
Q Consensus 205 ~~vq~ 209 (226)
+++-+
T Consensus 129 i~~P~ 133 (335)
T PF04007_consen 129 IITPE 133 (335)
T ss_pred eECCc
Confidence 99876
No 17
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=98.00 E-value=0.00028 Score=54.68 Aligned_cols=108 Identities=13% Similarity=0.177 Sum_probs=64.4
Q ss_pred EEEEEec-ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 46 STLIVLG-SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 46 kiliv~G-tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
|||+++. ..+| ...+++.|++++++ +.+++..++.+.. +. . .++.+..++..++.
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~--V~ii~~~~~~~~~-----~~----~-----~~i~~~~~~~~~k~----- 56 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYD--VHIITPRNDYEKY-----EI----I-----EGIKVIRLPSPRKS----- 56 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCE--EEEEEcCCCchhh-----hH----h-----CCeEEEEecCCCCc-----
Confidence 5777754 4455 45678889888876 4444443332111 10 0 24667777533321
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcC-CccceEEEEccCCc
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIG-IRWSSIFYVESIAR 185 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllg-i~~~~iv~~Esnar 185 (226)
++..+. +.+-.+++++++||+|.+.++... ..++.+++++.+ + |+++......
T Consensus 57 --~~~~~~-~~~l~k~ik~~~~DvIh~h~~~~~--~~~~~l~~~~~~~~---~~i~~~hg~~ 110 (139)
T PF13477_consen 57 --PLNYIK-YFRLRKIIKKEKPDVIHCHTPSPY--GLFAMLAKKLLKNK---KVIYTVHGSD 110 (139)
T ss_pred --cHHHHH-HHHHHHHhccCCCCEEEEecCChH--HHHHHHHHHHcCCC---CEEEEecCCe
Confidence 223333 346678999999999999998753 122223467788 6 8888777553
No 18
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=97.96 E-value=0.0002 Score=64.00 Aligned_cols=79 Identities=15% Similarity=0.090 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhHhcCCcEEEecCCC-cchhHHHHHHHHHHcCCccceEEEEccCCcc---CCcchhhhhhcccCCccEEE
Q 027253 131 LLATTHALWLMVKIRPQVVLCNGPG-TCIPLCVIAFLFKVIGIRWSSIFYVESIARV---KRLSLSGLLLYKLCIADQFF 206 (226)
Q Consensus 131 l~~~~~a~~il~k~kPdvVi~tGg~-vsvP~~lAa~lakllgi~~~~iv~~Esnarv---~~~sltgKll~~~~~ad~~~ 206 (226)
.....+..+.+++++||+|++.|.. .+++.+ .+++..|+ |++++|...+. ..+...+|... .+++|.++
T Consensus 74 ~~~~~~l~~~l~~~~pDvV~~~g~~~~~~~~~---~aa~~~~i---Pvv~~~~g~~s~~~~~~~~~~r~~~-~~~ad~~~ 146 (363)
T cd03786 74 AGLLIGLEAVLLEEKPDLVLVLGDTNETLAAA---LAAFKLGI---PVAHVEAGLRSFDRGMPDEENRHAI-DKLSDLHF 146 (363)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCchHHHHHH---HHHHHcCC---CEEEEecccccCCCCCCchHHHHHH-HHHhhhcc
Confidence 3445666778888999999999853 334444 44788898 99999976542 23555566532 57899999
Q ss_pred eechhhhhhC
Q 027253 207 VQWPQLQRKY 216 (226)
Q Consensus 207 vq~e~~~~~~ 216 (226)
+..|+.++++
T Consensus 147 ~~s~~~~~~l 156 (363)
T cd03786 147 APTEEARRNL 156 (363)
T ss_pred CCCHHHHHHH
Confidence 9999887764
No 19
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.81 E-value=0.00017 Score=65.73 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=28.3
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEE
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYI 78 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~ 78 (226)
|||+++ .|+-||++|+++++++|.+++++ ..++
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~-V~~~ 34 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHE-VRVA 34 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCe-EEEe
Confidence 789988 89999999999999999998865 4444
No 20
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=97.68 E-value=0.0032 Score=58.13 Aligned_cols=133 Identities=16% Similarity=0.126 Sum_probs=79.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHH
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTS 126 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~ 126 (226)
|-+=+.|.|++..+..+++.|+++.++..+.++..+..- .+.+ ++.. + ........|....
T Consensus 53 iW~Ha~s~Ge~~~~~~l~~~l~~~~~~~~i~~t~~t~~~-~~~~---~~~~-~------~~~~~~~~P~d~~-------- 113 (425)
T PRK05749 53 IWFHAVSVGETRAAIPLIRALRKRYPDLPILVTTMTPTG-SERA---QALF-G------DDVEHRYLPYDLP-------- 113 (425)
T ss_pred EEEEeCCHHHHHHHHHHHHHHHHhCCCCcEEEeCCCccH-HHHH---HHhc-C------CCceEEEecCCcH--------
Confidence 555599999999999999999877655455555433222 1111 1110 0 0123333443211
Q ss_pred HHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcch--------hhhhhcc
Q 027253 127 VWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSL--------SGLLLYK 198 (226)
Q Consensus 127 ~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sl--------tgKll~~ 198 (226)
+...+++++++||+|+...... -|-.+++ ++..|+ |++++. +|...-|. --|.+
T Consensus 114 --------~~~~~~l~~~~Pd~v~~~~~~~-~~~~l~~--~~~~~i---p~vl~~--~~~~~~s~~~~~~~~~~~r~~-- 175 (425)
T PRK05749 114 --------GAVRRFLRFWRPKLVIIMETEL-WPNLIAE--LKRRGI---PLVLAN--ARLSERSFKRYQKFKRFYRLL-- 175 (425)
T ss_pred --------HHHHHHHHhhCCCEEEEEecch-hHHHHHH--HHHCCC---CEEEEe--ccCChhhHHHHHHHHHHHHHH--
Confidence 2334567889999999887654 3655443 677888 998873 33222221 22344
Q ss_pred cCCccEEEeechhhhhhC
Q 027253 199 LCIADQFFVQWPQLQRKY 216 (226)
Q Consensus 199 ~~~ad~~~vq~e~~~~~~ 216 (226)
.+.+|.++++-++.++.+
T Consensus 176 ~~~~d~ii~~S~~~~~~l 193 (425)
T PRK05749 176 FKNIDLVLAQSEEDAERF 193 (425)
T ss_pred HHhCCEEEECCHHHHHHH
Confidence 346899999999887654
No 21
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=97.63 E-value=0.00071 Score=61.11 Aligned_cols=159 Identities=21% Similarity=0.157 Sum_probs=93.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhc-CCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchh
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMD-RFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~-~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~ 123 (226)
|||+++.||=-|..-+-.+.++|+++ +++..+.++|....+ ..+.++.+ +.+ ..+++ .+... +.+.
T Consensus 1 ~~i~~~~gtr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~----~~~~~~~~----~i~-~~~~~-~~~~~---~~~~ 67 (365)
T TIGR00236 1 LKVSIVLGTRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREM----LDQVLDLF----HLP-PDYDL-NIMSP---GQTL 67 (365)
T ss_pred CeEEEEEecCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHH----HHHHHHhc----CCC-CCeee-ecCCC---CCCH
Confidence 68999999999999999999999865 455455554443222 22223221 100 01111 11111 1222
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCcc-----CCcchhhhhhcc
Q 027253 124 VTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARV-----KRLSLSGLLLYK 198 (226)
Q Consensus 124 ~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv-----~~~sltgKll~~ 198 (226)
.. ++...+.+-.+++++++||+|++-|.-.+.. .++.+++.+|+ |++.+|---|. ..|-..+|.+.
T Consensus 68 ~~---~~~~~~~~l~~~l~~~~pDiv~~~gd~~~~l--a~a~aa~~~~i---pv~h~~~g~~s~~~~~~~~~~~~r~~~- 138 (365)
T TIGR00236 68 GE---ITSNMLEGLEELLLEEKPDIVLVQGDTTTTL--AGALAAFYLQI---PVGHVEAGLRTGDRYSPMPEEINRQLT- 138 (365)
T ss_pred HH---HHHHHHHHHHHHHHHcCCCEEEEeCCchHHH--HHHHHHHHhCC---CEEEEeCCCCcCCCCCCCccHHHHHHH-
Confidence 22 3334455556788999999999999643322 22344788999 99988643221 02334466542
Q ss_pred cCCccEEEeechhhhhhC-----C--CceEEecc
Q 027253 199 LCIADQFFVQWPQLQRKY-----P--RAHYVGCL 225 (226)
Q Consensus 199 ~~~ad~~~vq~e~~~~~~-----p--~a~y~G~l 225 (226)
.++||.++++-++.++.+ + +..++|+.
T Consensus 139 ~~~ad~~~~~s~~~~~~l~~~G~~~~~I~vign~ 172 (365)
T TIGR00236 139 GHIADLHFAPTEQAKDNLLRENVKADSIFVTGNT 172 (365)
T ss_pred HHHHHhccCCCHHHHHHHHHcCCCcccEEEeCCh
Confidence 568999999999877643 2 34567764
No 22
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.54 E-value=0.0011 Score=58.35 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=81.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
|+++-..+.||--.....++++|.+.+++ +.+++....... ..+. .++.++.++....
T Consensus 1 ~~~~~~~~~gG~e~~~~~l~~~L~~~g~~--v~v~~~~~~~~~----~~~~----------~~~~~~~~~~~~~------ 58 (355)
T cd03819 1 LQVLPALESGGVERGTLELARALVERGHR--SLVASAGGRLVA----ELEA----------EGSRHIKLPFISK------ 58 (355)
T ss_pred CccchhhccCcHHHHHHHHHHHHHHcCCE--EEEEcCCCchHH----HHHh----------cCCeEEEcccccc------
Confidence 34555577799999999999999988865 444444322211 1111 1234444432221
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEE--EEccCCccCCcchhhhhhcccCCc
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIF--YVESIARVKRLSLSGLLLYKLCIA 202 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv--~~Esnarv~~~sltgKll~~~~~a 202 (226)
.++..+..+....+.+++.+||+|++++.....+..+ +++..++ |++ +|+.+.. .+.-.+++ ..+
T Consensus 59 -~~~~~~~~~~~l~~~~~~~~~dii~~~~~~~~~~~~~---~~~~~~~---~~i~~~h~~~~~---~~~~~~~~---~~~ 125 (355)
T cd03819 59 -NPLRILLNVARLRRLIREEKVDIVHARSRAPAWSAYL---AARRTRP---PFVTTVHGFYSV---NFRYNAIM---ARG 125 (355)
T ss_pred -chhhhHHHHHHHHHHHHHcCCCEEEECCCchhHHHHH---HHHhcCC---CEEEEeCCchhh---HHHHHHHH---Hhc
Confidence 1122333445556778889999999999876655443 3567777 887 5666542 22344444 468
Q ss_pred cEEEeechhhhh
Q 027253 203 DQFFVQWPQLQR 214 (226)
Q Consensus 203 d~~~vq~e~~~~ 214 (226)
|.+++.-+.+.+
T Consensus 126 ~~vi~~s~~~~~ 137 (355)
T cd03819 126 DRVIAVSNFIAD 137 (355)
T ss_pred CEEEEeCHHHHH
Confidence 888887776554
No 23
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.33 E-value=0.0081 Score=55.62 Aligned_cols=151 Identities=13% Similarity=0.070 Sum_probs=80.4
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCc---cc
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSR---EV 119 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r---~~ 119 (226)
..|+++. ..-+|+-.-+..+++.|.+++++ ...+.........+. .+ ..++.++.++..+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~-V~ii~~~~~~~~~~~---~~----------~~~v~~~~~~~~~~~~~~ 68 (415)
T cd03816 3 RKRVCVLVLGDIGRSPRMQYHALSLAKHGWK-VDLVGYLETPPHDEI---LS----------NPNITIHPLPPPPQRLNK 68 (415)
T ss_pred ccEEEEEEecccCCCHHHHHHHHHHHhcCce-EEEEEecCCCCCHHH---hc----------CCCEEEEECCCCcccccc
Confidence 4577766 78888888889999999988876 444433322211000 00 0246666664332 11
Q ss_pred cchhHHHHHHHHHHHHHHHH-hhHhcCCcEEEec-CCCcchhHHHHHHH-HHHcCCccceEEE--EccCCccC-----Cc
Q 027253 120 GQSYVTSVWTTLLATTHALW-LMVKIRPQVVLCN-GPGTCIPLCVIAFL-FKVIGIRWSSIFY--VESIARVK-----RL 189 (226)
Q Consensus 120 ~~~~~~~~~~~l~~~~~a~~-il~k~kPdvVi~t-Gg~vsvP~~lAa~l-akllgi~~~~iv~--~Esnarv~-----~~ 189 (226)
....+..+...+..++..++ ++++.+||+|+++ .+ ++|..+++++ +++.+. |+|+ |+.+-.+. ..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~Dvi~~~~~~--~~~~~~~a~~~~~~~~~---~~V~~~h~~~~~~~~~~~~~~ 143 (415)
T cd03816 69 LPFLLFAPLKVLWQFFSLLWLLYKLRPADYILIQNPP--SIPTLLIAWLYCLLRRT---KLIIDWHNYGYTILALKLGEN 143 (415)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCC--CchHHHHHHHHHHHhCC---eEEEEcCCchHHHHhcccCCC
Confidence 11222222233333444444 3455789999974 33 2333333333 555676 8887 44321000 00
Q ss_pred -------chhhhhhcccCCccEEEeechhhhhh
Q 027253 190 -------SLSGLLLYKLCIADQFFVQWPQLQRK 215 (226)
Q Consensus 190 -------sltgKll~~~~~ad~~~vq~e~~~~~ 215 (226)
..-.+.+ ++.||.+++.-+.+++.
T Consensus 144 ~~~~~~~~~~e~~~--~~~ad~ii~vS~~~~~~ 174 (415)
T cd03816 144 HPLVRLAKWYEKLF--GRLADYNLCVTKAMKED 174 (415)
T ss_pred CHHHHHHHHHHHHH--hhcCCEeeecCHHHHHH
Confidence 1123456 56899999999887653
No 24
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=97.20 E-value=0.0018 Score=60.72 Aligned_cols=145 Identities=12% Similarity=0.165 Sum_probs=75.3
Q ss_pred CCCeEEEEEec------ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeec
Q 027253 42 PQPLSTLIVLG------SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYR 115 (226)
Q Consensus 42 ~~~~kiliv~G------tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r 115 (226)
.+||||+++.- .||=-.-...+++.|.+.+++ +.+++..++... +. .++.......
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~e--V~vlt~~~~~~~------~~----------~g~~v~~~~~ 117 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDE--VLVVTTDEGVPQ------EF----------HGAKVIGSWS 117 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCe--EEEEecCCCCCc------cc----------cCceeeccCC
Confidence 56899998832 255446778889999888765 444444333210 00 0122211110
Q ss_pred CccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE--EccCCccCCcch--
Q 027253 116 SREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY--VESIARVKRLSL-- 191 (226)
Q Consensus 116 ~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~--~Esnarv~~~sl-- 191 (226)
.... .+...++... ...+..+++++.+||+|.++.++......+ .+++..++ |+++ |..... ..++.
T Consensus 118 ~~~~--~~~~~~~~~~-~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~--~~ak~~~i---p~V~~~h~~~~~-~~~~~~~ 188 (465)
T PLN02871 118 FPCP--FYQKVPLSLA-LSPRIISEVARFKPDLIHASSPGIMVFGAL--FYAKLLCV---PLVMSYHTHVPV-YIPRYTF 188 (465)
T ss_pred cCCc--cCCCceeecc-CCHHHHHHHHhCCCCEEEECCCchhHHHHH--HHHHHhCC---CEEEEEecCchh-hhhcccc
Confidence 0000 0000000100 111455678889999999887764432222 34688887 8876 322110 01111
Q ss_pred ---------hhhhhcccCCccEEEeechhhhhh
Q 027253 192 ---------SGLLLYKLCIADQFFVQWPQLQRK 215 (226)
Q Consensus 192 ---------tgKll~~~~~ad~~~vq~e~~~~~ 215 (226)
..|.+ ++.+|.+++..+...+.
T Consensus 189 ~~~~~~~~~~~r~~--~~~ad~ii~~S~~~~~~ 219 (465)
T PLN02871 189 SWLVKPMWDIIRFL--HRAADLTLVTSPALGKE 219 (465)
T ss_pred hhhHHHHHHHHHHH--HhhCCEEEECCHHHHHH
Confidence 13556 56899999998876554
No 25
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=97.16 E-value=0.0064 Score=53.26 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=57.0
Q ss_pred ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHH
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTT 130 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~ 130 (226)
.|.|||-..+..+++.|.+++++ ..++...++.. .+.. . . ......++..+. ....
T Consensus 9 ~~~gG~~~~~~~l~~~L~~~g~~-v~v~~~~~~~~-~~~~---~-----~------~~~~~~~~~~~~--------~~~~ 64 (360)
T cd04951 9 LGLGGAEKQVVDLADQFVAKGHQ-VAIISLTGESE-VKPP---I-----D------ATIILNLNMSKN--------PLSF 64 (360)
T ss_pred CCCCCHHHHHHHHHHhcccCCce-EEEEEEeCCCC-ccch---h-----h------ccceEEeccccc--------chhh
Confidence 47899999999999999887765 33333222221 1100 0 0 011112222221 1223
Q ss_pred HHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 131 LLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 131 l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
+.+++...+++++.+||+|.++....+... .+.+.. ....|+++...+.
T Consensus 65 ~~~~~~~~~~~~~~~pdiv~~~~~~~~~~~----~l~~~~-~~~~~~v~~~h~~ 113 (360)
T cd04951 65 LLALWKLRKILRQFKPDVVHAHMFHANIFA----RLLRLF-LPSPPLICTAHSK 113 (360)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcccchHHHH----HHHHhh-CCCCcEEEEeecc
Confidence 445566677888999999999887644222 222322 1123677655543
No 26
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=97.14 E-value=0.01 Score=50.80 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=78.0
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
||+++ ...||+......+++.|.+.+++ ..++ ...+.... .. + + .++....++..+.. .
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~-v~~~-~~~~~~~~-~~---~-----~-----~~~~~~~~~~~~~~-~--- 60 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYE-VHVV-APPGDELE-EL---E-----A-----LGVKVIPIPLDRRG-I--- 60 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCe-eEEE-ecCCCccc-cc---c-----c-----CCceEEeccccccc-c---
Confidence 56777 45699999999999999877776 3344 33322211 00 1 0 23455555433311 1
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCC--c-------chhhhh
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKR--L-------SLSGLL 195 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~--~-------sltgKl 195 (226)
..+..+..+.+..+++++.+||+|++.......... +.++..+. .++++.-....... . ....|.
T Consensus 61 -~~~~~~~~~~~~~~~~~~~~~dvv~~~~~~~~~~~~---~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (359)
T cd03808 61 -NPFKDLKALLRLYRLLRKERPDIVHTHTPKPGILGR---LAARLAGV--PKVIYTVHGLGFVFTSGGLKRRLYLLLERL 134 (359)
T ss_pred -ChHhHHHHHHHHHHHHHhcCCCEEEEccccchhHHH---HHHHHcCC--CCEEEEecCcchhhccchhHHHHHHHHHHH
Confidence 122334455666778889999999999665443322 33443443 24444322211000 1 112244
Q ss_pred hcccCCccEEEeechhhhhhC
Q 027253 196 LYKLCIADQFFVQWPQLQRKY 216 (226)
Q Consensus 196 l~~~~~ad~~~vq~e~~~~~~ 216 (226)
+ .+.+|.+++.-+...+.+
T Consensus 135 ~--~~~~d~ii~~s~~~~~~~ 153 (359)
T cd03808 135 A--LRFTDKVIFQNEDDRDLA 153 (359)
T ss_pred H--HhhccEEEEcCHHHHHHH
Confidence 4 457899998887776544
No 27
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.03 E-value=0.011 Score=51.93 Aligned_cols=118 Identities=13% Similarity=0.118 Sum_probs=62.7
Q ss_pred eEEEEE--ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 45 LSTLIV--LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 45 ~kiliv--~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
|||++. |..-||+..+++|+++|+ +++ ..++++ ++.. +.. +... +.... ..+.+ ...... ..
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~Lr--g~~-v~~~~~-~~~~--~~~---~~~~-~~~~~--~~~~~--~~~~~~--~~ 64 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARALR--GHE-VTFITS-GPAP--EFL---KPRF-PVREI--PGLGP--IQENGR--LD 64 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHHc--cCc-eEEEEc-CCcH--HHh---cccc-CEEEc--cCceE--eccCCc--cc
Confidence 789887 445599999999999993 554 444433 3222 111 1111 00000 00111 111111 11
Q ss_pred hHHHHH-------HHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccC
Q 027253 123 YVTSVW-------TTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVK 187 (226)
Q Consensus 123 ~~~~~~-------~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~ 187 (226)
...+.. .....+.+-.+.+.+++||+||+-....+ +.+++..|+ |.+.+.+.....
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~~~~~------~~aa~~~gi---P~i~i~~~~~~~ 127 (318)
T PF13528_consen 65 RWKTVRNNIRWLARLARRIRREIRWLREFRPDLVISDFYPLA------ALAARRAGI---PVIVISNQYWFL 127 (318)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcChHHH------HHHHHhcCC---CEEEEEehHHcc
Confidence 111222 22233344456778899999999965542 244788998 888776665443
No 28
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=97.00 E-value=0.005 Score=56.25 Aligned_cols=68 Identities=12% Similarity=-0.015 Sum_probs=43.8
Q ss_pred HhhHhcCCcEEEecCCCcch-hHHHHHHHHHHc--CCccceEEEEccCCccCCcchhhhhhcccCCccEEEeechhhhhh
Q 027253 139 WLMVKIRPQVVLCNGPGTCI-PLCVIAFLFKVI--GIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQFFVQWPQLQRK 215 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsv-P~~lAa~lakll--gi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~vq~e~~~~~ 215 (226)
+++++++||+|++|-|..+. |..++ .++. +..+.|++.+=++- -....+++ .+.+|.+++..+++++.
T Consensus 94 ~~i~~~~pDvIi~thp~~~~~~~~~l---~~~~~~~~~~~p~~~~~tD~----~~~~~~w~--~~~~d~~~~~s~~~~~~ 164 (382)
T PLN02605 94 KGLMKYKPDIIVSVHPLMQHVPLRVL---RWQGKELGKKIPFTTVVTDL----GTCHPTWF--HKGVTRCFCPSEEVAKR 164 (382)
T ss_pred HHHHhcCcCEEEEeCcCcccCHHHHH---HHHhhccCCCCCEEEEECCC----CCcCcccc--cCCCCEEEECCHHHHHH
Confidence 57788999999999876543 54433 3332 11123776554442 12345777 78999999999987654
No 29
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=96.87 E-value=0.006 Score=55.70 Aligned_cols=23 Identities=13% Similarity=0.254 Sum_probs=20.8
Q ss_pred ecChhhHHHHHHHHHHhhhcCCC
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.|+-||++|++.||++|+++|++
T Consensus 3 ~p~~Ghv~P~l~lA~~L~~~Gh~ 25 (392)
T TIGR01426 3 IPAHGHVNPTLGVVEELVARGHR 25 (392)
T ss_pred CCccccccccHHHHHHHHhCCCe
Confidence 47889999999999999998865
No 30
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=96.85 E-value=0.034 Score=47.83 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=72.7
Q ss_pred ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHH
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTT 130 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~ 130 (226)
.++||+-..+..+++.|.+.+++.. ++....+.. . ...+.. .++.+..++.... . ..
T Consensus 9 ~~~gG~~~~~~~l~~~l~~~~~~v~-~~~~~~~~~---~----~~~~~~------~~i~v~~~~~~~~--~-------~~ 65 (365)
T cd03807 9 LDVGGAERMLVRLLKGLDRDRFEHV-VISLTDRGE---L----GEELEE------AGVPVYCLGKRPG--R-------PD 65 (365)
T ss_pred ccCccHHHHHHHHHHHhhhccceEE-EEecCcchh---h----hHHHHh------cCCeEEEEecccc--c-------cc
Confidence 6889999999999999977776633 332222111 1 111111 1344544443321 0 11
Q ss_pred HHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHH-cCCccceEEEEccCCccCC-------cchhhhhhcccCCc
Q 027253 131 LLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKV-IGIRWSSIFYVESIARVKR-------LSLSGLLLYKLCIA 202 (226)
Q Consensus 131 l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakl-lgi~~~~iv~~Esnarv~~-------~sltgKll~~~~~a 202 (226)
+....+..+++++.+||+|++..........++ .+. .+. |+++...+..... .....+.+ .+.+
T Consensus 66 ~~~~~~~~~~~~~~~~div~~~~~~~~~~~~~~---~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 137 (365)
T cd03807 66 PGALLRLYKLIRRLRPDVVHTWMYHADLYGGLA---ARLAGVP---PVIWGIRHSDLDLGKKSTRLVARLRRLL--SSFI 137 (365)
T ss_pred HHHHHHHHHHHHhhCCCEEEeccccccHHHHHH---HHhcCCC---cEEEEecCCcccccchhHhHHHHHHHHh--cccc
Confidence 123445566778899999999877755444433 344 344 7777555543221 12234555 5677
Q ss_pred cEEEeechhhhh
Q 027253 203 DQFFVQWPQLQR 214 (226)
Q Consensus 203 d~~~vq~e~~~~ 214 (226)
|.+++.-+...+
T Consensus 138 ~~~i~~s~~~~~ 149 (365)
T cd03807 138 PLIVANSAAAAE 149 (365)
T ss_pred CeEEeccHHHHH
Confidence 886666555443
No 31
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=96.85 E-value=0.017 Score=50.00 Aligned_cols=149 Identities=15% Similarity=0.132 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHHH
Q 027253 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (226)
Q Consensus 54 GGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~~ 133 (226)
|||-..+..+++.|.+.+++ ..+++................. ...++.+..++.........+..+.....-
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~-v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (394)
T cd03794 14 GGGAFRTTELAEELVKRGHE-VTVITGSPNYPSGKIYKGYKRE-------EVDGVRVHRVPLPPYKKNGLLKRLLNYLSF 85 (394)
T ss_pred CCcceeHHHHHHHHHhCCce-EEEEecCCCcccccccccceEE-------ecCCeEEEEEecCCCCccchHHHHHhhhHH
Confidence 79999999999999987776 4444332222211000000000 002345555543322222222333333333
Q ss_pred HHHHHHhhH--hcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCcc---------CCc-------chhhhh
Q 027253 134 TTHALWLMV--KIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARV---------KRL-------SLSGLL 195 (226)
Q Consensus 134 ~~~a~~il~--k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv---------~~~-------sltgKl 195 (226)
.+.....+. +.+||+|++..+....... +..+++..++ |++++-.+.-. ... ..-.+.
T Consensus 86 ~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~-~~~~~~~~~~---~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (394)
T cd03794 86 ALSALLALLKRRRRPDVIIATSPPLLIALA-ALLLARLKGA---PFVLEVRDLWPESAVALGLLKNGSLLYRLLRKLERL 161 (394)
T ss_pred HHHHHHHHHhcccCCCEEEEcCChHHHHHH-HHHHHHhcCC---CEEEEehhhcchhHHHccCccccchHHHHHHHHHHH
Confidence 344444444 7889999999843332222 2234555676 88776443100 000 011123
Q ss_pred hcccCCccEEEeechhhhhhC
Q 027253 196 LYKLCIADQFFVQWPQLQRKY 216 (226)
Q Consensus 196 l~~~~~ad~~~vq~e~~~~~~ 216 (226)
+ .+.+|.+++.-++.++.+
T Consensus 162 ~--~~~~d~vi~~s~~~~~~~ 180 (394)
T cd03794 162 I--YRRADAIVVISPGMREYL 180 (394)
T ss_pred H--HhcCCEEEEECHHHHHHH
Confidence 3 356899999888876654
No 32
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=96.75 E-value=0.039 Score=48.84 Aligned_cols=143 Identities=10% Similarity=0.037 Sum_probs=72.6
Q ss_pred eEEEEE--ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 45 LSTLIV--LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 45 ~kiliv--~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
|||+++ -..||....+..+++.|.+.+++ ..+++...+ .+.. + . . ....+..++..+.....
T Consensus 1 mki~~~~~p~~gG~~~~~~~la~~L~~~G~~-v~v~~~~~~-~~~~-----~-~---~-----~~~~~~~~~~~~~~~~~ 64 (371)
T cd04962 1 MKIGIVCYPTYGGSGVVATELGKALARRGHE-VHFITSSRP-FRLD-----E-Y---S-----PNIFFHEVEVPQYPLFQ 64 (371)
T ss_pred CceeEEEEeCCCCccchHHHHHHHHHhcCCc-eEEEecCCC-cchh-----h-h---c-----cCeEEEEecccccchhh
Confidence 567766 36789999999999999988876 444433322 1100 0 0 0 12233333221110001
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHH-HHc---CCccceEEEEccCCccCCc------chh
Q 027253 123 YVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLF-KVI---GIRWSSIFYVESIARVKRL------SLS 192 (226)
Q Consensus 123 ~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~la-kll---gi~~~~iv~~Esnarv~~~------slt 192 (226)
.............+.+++.+||+|.++.+....... .++ ++. ++ |+++.--....... ...
T Consensus 65 ---~~~~~~~~~~~l~~~i~~~~~divh~~~~~~~~~~~---~~~~~~~~~~~~---~~i~~~h~~~~~~~~~~~~~~~~ 135 (371)
T cd04962 65 ---YPPYDLALASKIAEVAKRYKLDLLHVHYAVPHAVAA---YLAREILGKKDL---PVVTTLHGTDITLVGQDPSFQPA 135 (371)
T ss_pred ---cchhHHHHHHHHHHHHhcCCccEEeecccCCccHHH---HHHHHhcCcCCC---cEEEEEcCCccccccccccchHH
Confidence 111111223344466778899999998765332222 222 333 55 77754322111111 112
Q ss_pred hhhhcccCCccEEEeechhhhh
Q 027253 193 GLLLYKLCIADQFFVQWPQLQR 214 (226)
Q Consensus 193 gKll~~~~~ad~~~vq~e~~~~ 214 (226)
-+.. .+.+|.+++..++..+
T Consensus 136 ~~~~--~~~~d~ii~~s~~~~~ 155 (371)
T cd04962 136 TRFS--IEKSDGVTAVSESLRQ 155 (371)
T ss_pred HHHH--HhhCCEEEEcCHHHHH
Confidence 2444 4579999999887654
No 33
>PLN02275 transferase, transferring glycosyl groups
Probab=96.55 E-value=0.093 Score=47.74 Aligned_cols=152 Identities=14% Similarity=0.081 Sum_probs=76.5
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccc-cc-h
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREV-GQ-S 122 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~-~~-~ 122 (226)
|+.|. .|-+|.-..|...+..+-+++......+....++. .. |.. . ..+++.+..+.++.. .. .
T Consensus 6 ~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~-~~-----~~~--~-----~~~v~v~r~~~~~~~~~~~~ 72 (371)
T PLN02275 6 RAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEP-IP-----ALL--N-----HPSIHIHLMVQPRLLQRLPR 72 (371)
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCC-CH-----HHh--c-----CCcEEEEECCCccccccccc
Confidence 44444 68888888887777777666533233333322211 00 100 0 024666666421110 01 1
Q ss_pred hHH---HHHHHHHHHHHHHHh--hHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE--EccCCccCC-------
Q 027253 123 YVT---SVWTTLLATTHALWL--MVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY--VESIARVKR------- 188 (226)
Q Consensus 123 ~~~---~~~~~l~~~~~a~~i--l~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~--~Esnarv~~------- 188 (226)
.+. -+....+.+....+. .++++||+|.++.+....+...+.+++++.+. |+++ |+.+.....
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~~~~---p~v~~~h~~~~~~~~~~~~~~~ 149 (371)
T PLN02275 73 VLYALALLLKVAIQFLMLLWFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWLRRA---KFVIDWHNFGYTLLALSLGRSH 149 (371)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHHhCC---CEEEEcCCccHHHHhcccCCCC
Confidence 111 111233344444454 35689999999765543333333344666776 8877 433211100
Q ss_pred -----cchhhhhhcccCCccEEEeechhhhhh
Q 027253 189 -----LSLSGLLLYKLCIADQFFVQWPQLQRK 215 (226)
Q Consensus 189 -----~sltgKll~~~~~ad~~~vq~e~~~~~ 215 (226)
...-.|.+ ++.||.+++.-+..++.
T Consensus 150 ~~~~~~~~~e~~~--~~~ad~ii~~S~~~~~~ 179 (371)
T PLN02275 150 PLVRLYRWYERHY--GKMADGHLCVTKAMQHE 179 (371)
T ss_pred HHHHHHHHHHHHH--HhhCCEEEECCHHHHHH
Confidence 11224566 56899999988876543
No 34
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=96.42 E-value=0.034 Score=49.85 Aligned_cols=131 Identities=15% Similarity=0.196 Sum_probs=70.3
Q ss_pred ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHH
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTT 130 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~ 130 (226)
.+.||...-++.+++.|++++++ .. ++..++.-+ ...+.+. .++.++.++.... ..
T Consensus 11 ~~~GG~e~~~~~l~~~l~~~~~~-~~-v~~~~~~~~--~~~~~~~----------~~i~~~~~~~~~~---~~------- 66 (374)
T TIGR03088 11 FDVGGLENGLVNLINHLPADRYR-HA-VVALTEVSA--FRKRIQR----------PDVAFYALHKQPG---KD------- 66 (374)
T ss_pred CCCCcHHHHHHHHHhhccccccc-eE-EEEcCCCCh--hHHHHHh----------cCceEEEeCCCCC---CC-------
Confidence 67899999999999999887775 22 333222111 1111110 2355666654321 11
Q ss_pred HHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEE-ccCCccCC-c--c----hhhhhhcccCCc
Q 027253 131 LLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYV-ESIARVKR-L--S----LSGLLLYKLCIA 202 (226)
Q Consensus 131 l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~-Esnarv~~-~--s----ltgKll~~~~~a 202 (226)
+..+++-.+++++++||+|-+.+... .. +.+++++.++ |..+| +....... . . ..-|+. .+.+
T Consensus 67 ~~~~~~l~~~l~~~~~Divh~~~~~~-~~---~~~~~~~~~~---~~~i~~~h~~~~~~~~~~~~~~~~~~~~~--~~~~ 137 (374)
T TIGR03088 67 VAVYPQLYRLLRQLRPDIVHTRNLAA-LE---AQLPAALAGV---PARIHGEHGRDVFDLDGSNWKYRWLRRLY--RPLI 137 (374)
T ss_pred hHHHHHHHHHHHHhCCCEEEEcchhH-HH---HHHHHHhcCC---CeEEEeecCcccccchhhHHHHHHHHHHH--HhcC
Confidence 12334556778889999999987532 22 2234566776 55444 21100000 1 1 122344 4678
Q ss_pred cEEEeechhhhh
Q 027253 203 DQFFVQWPQLQR 214 (226)
Q Consensus 203 d~~~vq~e~~~~ 214 (226)
|.+++.-++.++
T Consensus 138 ~~~i~vs~~~~~ 149 (374)
T TIGR03088 138 HHYVAVSRDLED 149 (374)
T ss_pred CeEEEeCHHHHH
Confidence 888877776544
No 35
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=96.12 E-value=0.071 Score=45.37 Aligned_cols=131 Identities=15% Similarity=0.115 Sum_probs=70.2
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHH
Q 027253 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~ 132 (226)
.||...-+..+++.|.+.+++ +.+++..+.-+. . .+ . . .++....++..... .....+.
T Consensus 12 ~gG~~~~~~~l~~~L~~~g~~--v~v~~~~~~~~~-~---~~--~--~-----~~~~~~~~~~~~~~------~~~~~~~ 70 (348)
T cd03820 12 AGGAERVLSNLANALAEKGHE--VTIISLDKGEPP-F---YE--L--D-----PKIKVIDLGDKRDS------KLLARFK 70 (348)
T ss_pred CCChHHHHHHHHHHHHhCCCe--EEEEecCCCCCC-c---cc--c--C-----Cccceeeccccccc------chhcccc
Confidence 789989999999999877765 333333222100 0 00 0 0 12233333221110 1111223
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchh-----hhhhcccCCccEEEe
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLS-----GLLLYKLCIADQFFV 207 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~slt-----gKll~~~~~ad~~~v 207 (226)
...+..+++++.+||+|+++++. .+..++. ...+. .|+++.+.+......... -+.. .+.+|.+++
T Consensus 71 ~~~~~~~~l~~~~~d~i~~~~~~--~~~~~~~---~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~d~ii~ 141 (348)
T cd03820 71 KLRRLRKLLKNNKPDVVISFLTS--LLTFLAS---LGLKI--VKLIVSEHNSPDAYKKRLRRLLLRRLL--YRRADAVVV 141 (348)
T ss_pred chHHHHHhhcccCCCEEEEcCch--HHHHHHH---Hhhcc--ccEEEecCCCccchhhhhHHHHHHHHH--HhcCCEEEE
Confidence 34455667788999999999988 3333331 11221 277777776532222111 3444 457999999
Q ss_pred echhhh
Q 027253 208 QWPQLQ 213 (226)
Q Consensus 208 q~e~~~ 213 (226)
.-+..+
T Consensus 142 ~s~~~~ 147 (348)
T cd03820 142 LTEEDR 147 (348)
T ss_pred eCHHHH
Confidence 888773
No 36
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=96.09 E-value=0.09 Score=44.77 Aligned_cols=135 Identities=14% Similarity=0.073 Sum_probs=74.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHHH
Q 027253 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (226)
Q Consensus 54 GGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~~ 133 (226)
||+...+..+++.|.+.+++ . .+++..+....... .. ........... ............
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~-v-~i~~~~~~~~~~~~---~~----------~~~~~~~~~~~-----~~~~~~~~~~~~ 73 (374)
T cd03801 14 GGAERHVLELARALAARGHE-V-TVLTPGDGGLPDEE---EV----------GGIVVVRPPPL-----LRVRRLLLLLLL 73 (374)
T ss_pred CcHhHHHHHHHHHHHhcCce-E-EEEecCCCCCCcee---ee----------cCcceecCCcc-----cccchhHHHHHH
Confidence 99999999999999877765 3 33333222211100 00 00000000000 011111222334
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCC-----------cchhhhhhcccCCc
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKR-----------LSLSGLLLYKLCIA 202 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~-----------~sltgKll~~~~~a 202 (226)
.....+.+.+.+||+|+..++....... .+++..++ |+++.-....... .....+.+ .+.+
T Consensus 74 ~~~~~~~~~~~~~Dii~~~~~~~~~~~~---~~~~~~~~---~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 145 (374)
T cd03801 74 ALRLRRLLRRERFDVVHAHDWLALLAAA---LAARLLGI---PLVLTVHGLEFGRPGNELGLLLKLARALERRA--LRRA 145 (374)
T ss_pred HHHHHHHhhhcCCcEEEEechhHHHHHH---HHHHhcCC---cEEEEeccchhhccccchhHHHHHHHHHHHHH--HHhC
Confidence 4555667788899999999999776655 23566676 7766544432111 11334555 5678
Q ss_pred cEEEeechhhhhhC
Q 027253 203 DQFFVQWPQLQRKY 216 (226)
Q Consensus 203 d~~~vq~e~~~~~~ 216 (226)
|.+++.-+...+.+
T Consensus 146 d~~i~~s~~~~~~~ 159 (374)
T cd03801 146 DRIIAVSEATREEL 159 (374)
T ss_pred CEEEEecHHHHHHH
Confidence 99998887765544
No 37
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=96.09 E-value=0.0097 Score=45.69 Aligned_cols=133 Identities=18% Similarity=0.121 Sum_probs=63.2
Q ss_pred hhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc-chhHHHHHHHHH
Q 027253 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG-QSYVTSVWTTLL 132 (226)
Q Consensus 54 GGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~-~~~~~~~~~~l~ 132 (226)
||--.-+..+++.|.+++++ ...++...+....+ .+ ..+..+..++..+... ...+.
T Consensus 1 GG~~~~~~~l~~~L~~~G~~-V~v~~~~~~~~~~~----~~----------~~~~~~~~~~~~~~~~~~~~~~------- 58 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHE-VTVVTPQPDPEDDE----EE----------EDGVRVHRLPLPRRPWPLRLLR------- 58 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-E-EEEEEE---GGG-S----EE----------ETTEEEEEE--S-SSSGGGHCC-------
T ss_pred CCHHHHHHHHHHHHHHCCCE-EEEEecCCCCcccc----cc----------cCCceEEeccCCccchhhhhHH-------
Confidence 66667778899999988876 44444333222110 00 0246666665433211 11111
Q ss_pred HHHHHHHhh--HhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCc-chh-------hhhhcccCCc
Q 027253 133 ATTHALWLM--VKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRL-SLS-------GLLLYKLCIA 202 (226)
Q Consensus 133 ~~~~a~~il--~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~-slt-------gKll~~~~~a 202 (226)
.++.-..++ ++++||+|.++++. +.+ ++.++.+..++ |+++.......... +.. .+.+ .+.|
T Consensus 59 ~~~~~~~~l~~~~~~~Dvv~~~~~~-~~~--~~~~~~~~~~~---p~v~~~h~~~~~~~~~~~~~~~~~~~~~~--~~~a 130 (160)
T PF13579_consen 59 FLRRLRRLLAARRERPDVVHAHSPT-AGL--VAALARRRRGI---PLVVTVHGTLFRRGSRWKRRLYRWLERRL--LRRA 130 (160)
T ss_dssp HHHHHHHHCHHCT---SEEEEEHHH-HHH--HHHHHHHHHT-----EEEE-SS-T------HHHHHHHHHHHHH--HHH-
T ss_pred HHHHHHHHHhhhccCCeEEEecccc-hhH--HHHHHHHccCC---cEEEEECCCchhhccchhhHHHHHHHHHH--HhcC
Confidence 222223444 78899999999954 222 22233337787 99998887532221 121 2344 4579
Q ss_pred cEEEeechhhhhhC
Q 027253 203 DQFFVQWPQLQRKY 216 (226)
Q Consensus 203 d~~~vq~e~~~~~~ 216 (226)
|.+++--+..++.+
T Consensus 131 d~vi~~S~~~~~~l 144 (160)
T PF13579_consen 131 DRVIVVSEAMRRYL 144 (160)
T ss_dssp SEEEESSHHHHHHH
T ss_pred CEEEECCHHHHHHH
Confidence 99999988876654
No 38
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=96.04 E-value=0.24 Score=43.35 Aligned_cols=139 Identities=12% Similarity=0.111 Sum_probs=70.5
Q ss_pred EEEEEe---cChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 46 STLIVL---GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 46 kiliv~---GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
||+++. +.||.-.-+..+++.|.+++++ ..+++..... + ......+. .+..+..++.....
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~-v~~i~~~~~~-~-~~~~~~~~----------~~~~~~~~~~~~~~--- 64 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQ-FDFLVTSKEE-G-DYDDEIEK----------LGGKIYYIPARKKN--- 64 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceE-EEEEEeCCCC-c-chHHHHHH----------cCCeEEEecCCCcc---
Confidence 455552 6799999999999999877765 4444433222 1 11111110 12344434332211
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCCccCCc--c------hhh
Q 027253 123 YVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIARVKRL--S------LSG 193 (226)
Q Consensus 123 ~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esnarv~~~--s------ltg 193 (226)
. ++.++ ...+++++++||+|.+.++..+.... ++++.++. |. +++..+...... . ..-
T Consensus 65 ~----~~~~~---~~~~~~~~~~~Dvv~~~~~~~~~~~~---~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~ 131 (358)
T cd03812 65 P----LKYFK---KLYKLIKKNKYDIVHVHGSSASGFIL---LAAKKAGV---KVRIAHSHNTSDSHDKKKKILKYKVLR 131 (358)
T ss_pred H----HHHHH---HHHHHHhcCCCCEEEEeCcchhHHHH---HHHhhCCC---CeEEEEeccccccccccchhhHHHHHH
Confidence 1 11112 22346778999999999888433322 44566665 44 332222111111 1 112
Q ss_pred hhhcccCCccEEEeechhhhhh
Q 027253 194 LLLYKLCIADQFFVQWPQLQRK 215 (226)
Q Consensus 194 Kll~~~~~ad~~~vq~e~~~~~ 215 (226)
+.+ .+.+|.+++.-+...+.
T Consensus 132 ~~~--~~~~~~~i~~s~~~~~~ 151 (358)
T cd03812 132 KLI--NRLATDYLACSEEAGKW 151 (358)
T ss_pred HHH--HhcCCEEEEcCHHHHHH
Confidence 344 45678777766655443
No 39
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.02 E-value=0.11 Score=46.97 Aligned_cols=133 Identities=14% Similarity=0.084 Sum_probs=86.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
|||.|=.|+--|..-.-.+..+|+++|++ ++++....+...+.... -++++.++...+.+... =
T Consensus 1 mkVwiDI~n~~hvhfFk~lI~elekkG~e--v~iT~rd~~~v~~LLd~-------------ygf~~~~Igk~g~~tl~-~ 64 (346)
T COG1817 1 MKVWIDIGNPPHVHFFKNLIWELEKKGHE--VLITCRDFGVVTELLDL-------------YGFPYKSIGKHGGVTLK-E 64 (346)
T ss_pred CeEEEEcCCcchhhHHHHHHHHHHhCCeE--EEEEEeecCcHHHHHHH-------------hCCCeEeecccCCccHH-H
Confidence 57777788888888888999999988865 67766655544443322 24666666554432111 0
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccE
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQ 204 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~ 204 (226)
+......+...- -+++.+++||+.++-+ |.+.- ..+..+|+ |.++.-.|- +.=-.||+. .|+||.
T Consensus 65 Kl~~~~eR~~~L-~ki~~~~kpdv~i~~~---s~~l~---rvafgLg~---psIi~~D~e---hA~~qnkl~--~Pla~~ 129 (346)
T COG1817 65 KLLESAERVYKL-SKIIAEFKPDVAIGKH---SPELP---RVAFGLGI---PSIIFVDNE---HAEAQNKLT--LPLADV 129 (346)
T ss_pred HHHHHHHHHHHH-HHHHhhcCCceEeecC---Ccchh---hHHhhcCC---ceEEecCCh---hHHHHhhcc--hhhhhh
Confidence 111222222222 3677899999999855 44433 55777888 888887774 455669999 899999
Q ss_pred EEee
Q 027253 205 FFVQ 208 (226)
Q Consensus 205 ~~vq 208 (226)
+++-
T Consensus 130 ii~P 133 (346)
T COG1817 130 IITP 133 (346)
T ss_pred eecc
Confidence 8764
No 40
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=95.99 E-value=0.056 Score=45.97 Aligned_cols=141 Identities=18% Similarity=0.171 Sum_probs=71.7
Q ss_pred EEEEE---ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 46 STLIV---LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 46 kiliv---~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
||+++ .+.||+...+..+++.|...+++ +.+++.....+..... +. .. .............
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~--v~v~~~~~~~~~~~~~--~~------~~--~~~~~~~~~~~~~---- 64 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYD--VTLVVLRDEGDYLELL--PS------NV--KLIPVRVLKLKSL---- 64 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCce--EEEEEcCCCCcccccc--cc------ch--hhhceeeeecccc----
Confidence 35555 23799999999999999777766 3333332222110000 00 00 0001111111111
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcch------hhhhh
Q 027253 123 YVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSL------SGLLL 196 (226)
Q Consensus 123 ~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sl------tgKll 196 (226)
..........+.+++.+||+|++++. ..+..++ .+.+.+++ |+++............ -.+.+
T Consensus 65 ------~~~~~~~~~~~~~~~~~~dii~~~~~--~~~~~~~-~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~ 132 (353)
T cd03811 65 ------RDLLAILRLRRLLRKEKPDVVISHLT--TTPNVLA-LLAARLGT---KLIVWEHNSLSLELKRKLRLLLLIRKL 132 (353)
T ss_pred ------cchhHHHHHHHHHHhcCCCEEEEcCc--cchhHHH-HHHhhcCC---ceEEEEcCcchhhhccchhHHHHHHhh
Confidence 11122334456677789999999998 1122222 23333355 7776666553222221 12344
Q ss_pred cccCCccEEEeechhhhhhC
Q 027253 197 YKLCIADQFFVQWPQLQRKY 216 (226)
Q Consensus 197 ~~~~~ad~~~vq~e~~~~~~ 216 (226)
.+.+|.+++..+..++.+
T Consensus 133 --~~~~d~ii~~s~~~~~~~ 150 (353)
T cd03811 133 --YRRADKIVAVSEGVKEDL 150 (353)
T ss_pred --ccccceEEEeccchhhhH
Confidence 467999999888766543
No 41
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=95.90 E-value=0.0082 Score=56.01 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=28.9
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEE
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYI 78 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~ 78 (226)
.||++++ .|+=||+.|.++|+++|++++++ ..|.
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~ghe-V~~~ 35 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHE-VVFA 35 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCe-EEEE
Confidence 3899988 88999999999999999998876 4443
No 42
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=95.84 E-value=0.2 Score=41.75 Aligned_cols=142 Identities=21% Similarity=0.197 Sum_probs=67.5
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHH
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVT 125 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~ 125 (226)
.|.+=+.|-|=+..+..|+++|+++..+..++++.+++.-. +.+ ++.+.+ .+.....|-.-.
T Consensus 23 ~iWiHa~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~-~~~---~~~~~~-------~v~~~~~P~D~~------- 84 (186)
T PF04413_consen 23 LIWIHAASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGR-EMA---RKLLPD-------RVDVQYLPLDFP------- 84 (186)
T ss_dssp -EEEE-SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHH-HHH---HGG-GG-------G-SEEE---SSH-------
T ss_pred cEEEEECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchH-HHH---HHhCCC-------CeEEEEeCccCH-------
Confidence 34444999999999999999998865555677766544331 111 111111 111222332211
Q ss_pred HHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcc---------hhhhhh
Q 027253 126 SVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLS---------LSGLLL 196 (226)
Q Consensus 126 ~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~s---------ltgKll 196 (226)
+.+.+.+...+||++|..++-.= |-.+.+ ++-.|+ |++.+. +|.+..| +...++
T Consensus 85 ---------~~~~rfl~~~~P~~~i~~EtElW-Pnll~~--a~~~~i---p~~LvN--arls~~s~~~~~~~~~~~r~~l 147 (186)
T PF04413_consen 85 ---------WAVRRFLDHWRPDLLIWVETELW-PNLLRE--AKRRGI---PVVLVN--ARLSERSFRRYRRFPFLFRPLL 147 (186)
T ss_dssp ---------HHHHHHHHHH--SEEEEES-----HHHHHH-------S----EEEEE--E--------------HHHHHHG
T ss_pred ---------HHHHHHHHHhCCCEEEEEccccC-HHHHHH--HhhcCC---CEEEEe--eeeccccchhhhhhHHHHHHHH
Confidence 12345666778999999998754 555433 677788 999984 4444333 334444
Q ss_pred cccCCccEEEeechhhhhhC-----C--CceEEecc
Q 027253 197 YKLCIADQFFVQWPQLQRKY-----P--RAHYVGCL 225 (226)
Q Consensus 197 ~~~~~ad~~~vq~e~~~~~~-----p--~a~y~G~l 225 (226)
. .-|.+++|-|+.++.| + +.+.+|++
T Consensus 148 --~-~f~~i~aqs~~da~r~~~lG~~~~~v~v~Gnl 180 (186)
T PF04413_consen 148 --S-RFDRILAQSEADAERFRKLGAPPERVHVTGNL 180 (186)
T ss_dssp --G-G-SEEEESSHHHHHHHHTTT-S--SEEE---G
T ss_pred --H-hCCEEEECCHHHHHHHHHcCCCcceEEEeCcc
Confidence 2 3499999999988766 2 46788875
No 43
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=95.82 E-value=0.2 Score=43.21 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=39.4
Q ss_pred HHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccEEEeechhhhh
Q 027253 135 THALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQFFVQWPQLQR 214 (226)
Q Consensus 135 ~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~vq~e~~~~ 214 (226)
....+++.+.+||+|+++.+. ..+..+. ..++..++ |+++...+... ........ ....|.+++.-+...+
T Consensus 86 ~~~~~~~~~~~~dii~~~~~~-~~~~~~~-~~~~~~~~---~~i~~~hd~~~--~~~~~~~~--~~~~d~ii~~s~~~~~ 156 (359)
T cd03823 86 AEFARLLEDFRPDVVHFHHLQ-GLGVSIL-RAARDRGI---PIVLTLHDYWL--ICPRQGLF--KKGGDAVIAPSRFLLD 156 (359)
T ss_pred HHHHHHHHHcCCCEEEECCcc-chHHHHH-HHHHhcCC---CEEEEEeeeee--ecchhhhh--ccCCCEEEEeCHHHHH
Confidence 344567778899999998873 3332222 23566676 87765443211 11122333 2334777776665544
Q ss_pred h
Q 027253 215 K 215 (226)
Q Consensus 215 ~ 215 (226)
.
T Consensus 157 ~ 157 (359)
T cd03823 157 R 157 (359)
T ss_pred H
Confidence 3
No 44
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=95.81 E-value=0.098 Score=47.74 Aligned_cols=138 Identities=11% Similarity=0.008 Sum_probs=71.8
Q ss_pred cChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHH
Q 027253 52 GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTL 131 (226)
Q Consensus 52 GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l 131 (226)
..||-......+++.|.+.+++ ...++...+..... +.+. .++..+.+|..+......+. +..
T Consensus 12 ~~GG~e~~~~~la~~L~~~G~~-V~v~~~~~~~~~~~---~~~~----------~~i~v~~~p~~~~~~~~~~~---~~~ 74 (398)
T cd03796 12 NLGGVETHIYQLSQCLIKRGHK-VVVITHAYGNRVGI---RYLT----------NGLKVYYLPFVVFYNQSTLP---TFF 74 (398)
T ss_pred ccccHHHHHHHHHHHHHHcCCe-eEEEeccCCcCCCc---cccc----------CceeEEEecceeccCCcccc---chh
Confidence 4688888999999999988876 33433321111000 0000 13455555532211111111 112
Q ss_pred HHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCc--cCC----cchhhhhhcccCCccEE
Q 027253 132 LATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIAR--VKR----LSLSGLLLYKLCIADQF 205 (226)
Q Consensus 132 ~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnar--v~~----~sltgKll~~~~~ad~~ 205 (226)
..+....+++.+++||+|-+.++...... .+.++++..++ |+++...... ... ....-+.. .+.+|.+
T Consensus 75 ~~~~~l~~~~~~~~~DiIh~~~~~~~~~~-~~~~~~~~~~~---~~v~t~h~~~~~~~~~~~~~~~~~~~~--~~~~d~i 148 (398)
T cd03796 75 GTFPLLRNILIRERITIVHGHQAFSALAH-EALLHARTMGL---KTVFTDHSLFGFADASSIHTNKLLRFS--LADVDHV 148 (398)
T ss_pred hhHHHHHHHHHhcCCCEEEECCCCchHHH-HHHHHhhhcCC---cEEEEecccccccchhhHHhhHHHHHh--hccCCEE
Confidence 23333445667889999999987655332 22244788887 8887654310 000 01112333 3568887
Q ss_pred Eeechhh
Q 027253 206 FVQWPQL 212 (226)
Q Consensus 206 ~vq~e~~ 212 (226)
++.-+..
T Consensus 149 i~~s~~~ 155 (398)
T cd03796 149 ICVSHTS 155 (398)
T ss_pred EEecHhH
Confidence 7766554
No 45
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=95.76 E-value=0.057 Score=48.13 Aligned_cols=107 Identities=13% Similarity=0.158 Sum_probs=56.0
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHH
Q 027253 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~ 132 (226)
+||+...+..+++.|.+.+++ ..+++...+.-..... + .. .++.+..++.......+. ...+....
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~-V~v~~~~~~~~~~~~~---~----~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~ 85 (398)
T cd03800 20 TGGQNVYVLELARALARLGHE-VDIFTRRIDDALPPIV---E----LA-----PGVRVVRVPAGPAEYLPK-EELWPYLD 85 (398)
T ss_pred CCceeehHHHHHHHHhccCce-EEEEEecCCcccCCcc---c----cc-----cceEEEecccccccCCCh-hhcchhHH
Confidence 689999999999999888776 4444332221110000 0 00 234555444211000000 00111111
Q ss_pred -HHHHHHHhhHhc--CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE
Q 027253 133 -ATTHALWLMVKI--RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY 179 (226)
Q Consensus 133 -~~~~a~~il~k~--kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~ 179 (226)
......+.+++. +||+|++.+...+.+.. .+++..++ |+++
T Consensus 86 ~~~~~~~~~~~~~~~~~Div~~~~~~~~~~~~---~~~~~~~~---~~i~ 129 (398)
T cd03800 86 EFADDLLRFLRREGGRPDLIHAHYWDSGLVAL---LLARRLGI---PLVH 129 (398)
T ss_pred HHHHHHHHHHHhcCCCccEEEEecCccchHHH---HHHhhcCC---ceEE
Confidence 122334455666 99999999887776555 34677887 7654
No 46
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=95.66 E-value=0.12 Score=48.05 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCC-CcchhHH
Q 027253 122 SYVTSVWTTLLATTHALWLMVKIRPQVVLCNGP-GTCIPLC 161 (226)
Q Consensus 122 ~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg-~vsvP~~ 161 (226)
..++.....+.+++.+++.+.+.+||++|.+-| ..++|+.
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~~ 124 (419)
T cd03806 84 PRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPLV 124 (419)
T ss_pred CceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHHH
Confidence 345566677778888888777789999998854 4445543
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=95.51 E-value=0.33 Score=48.56 Aligned_cols=125 Identities=15% Similarity=0.119 Sum_probs=71.2
Q ss_pred CCCCCe-EEEEE---ecChhhHHHHHHHHHHhhhcCC------------CCeEEEEEc--CCcchhhHHHHhhhhhhhhc
Q 027253 40 KSPQPL-STLIV---LGSGGHTAEMMNLLSVLQMDRF------------TPRFYIAAA--TDNMSLQKARVFEDSLLHKK 101 (226)
Q Consensus 40 ~~~~~~-kiliv---~GtGGH~~p~lal~~~l~~~~~------------~~~~~~~~~--~d~~s~~~~~~~e~~~~~~~ 101 (226)
.|-++. ||+++ ++.||=-...+.++..+...++ ...+++... .++.+ ....++++
T Consensus 276 ~~~~~~~rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~-~~~~~L~~------ 348 (694)
T PRK15179 276 GPESFVGPVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGAD-FFAATLAD------ 348 (694)
T ss_pred CCCCCcceEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcc-hHHHHHHh------
Confidence 334566 78766 6789999999999999987644 123454422 12110 01111111
Q ss_pred ccCCcceEEEEeecCccccc-------hhHH-----HHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHH
Q 027253 102 VIKGSSAQFMQIYRSREVGQ-------SYVT-----SVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKV 169 (226)
Q Consensus 102 ~~~~~~~~~~~i~r~r~~~~-------~~~~-----~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakl 169 (226)
.++....+++.+..+. ..+. .+......+++-.+++++++||+|.+......+-..+ ++++
T Consensus 349 ----~Gv~v~~l~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~~lg~l---Aa~~ 421 (694)
T PRK15179 349 ----AGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSIFACAL---AALL 421 (694)
T ss_pred ----CCCeEEEeccCCccCcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHHHHHHH---HHHH
Confidence 2355555543321110 0111 1112445667777889999999999998886544443 3677
Q ss_pred cCCccceEEEEc
Q 027253 170 IGIRWSSIFYVE 181 (226)
Q Consensus 170 lgi~~~~iv~~E 181 (226)
.++ |++++.
T Consensus 422 ~gv---PvIv~t 430 (694)
T PRK15179 422 AGV---PRIVLS 430 (694)
T ss_pred cCC---CEEEEE
Confidence 787 877644
No 48
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.46 E-value=0.32 Score=44.46 Aligned_cols=66 Identities=20% Similarity=0.147 Sum_probs=38.8
Q ss_pred cCCcEEEecCCCc-chhHHHHHHHHHHcCCccceEEEEccCCccC--------Ccchhh-------hhhcccCCccEEEe
Q 027253 144 IRPQVVLCNGPGT-CIPLCVIAFLFKVIGIRWSSIFYVESIARVK--------RLSLSG-------LLLYKLCIADQFFV 207 (226)
Q Consensus 144 ~kPdvVi~tGg~v-svP~~lAa~lakllgi~~~~iv~~Esnarv~--------~~sltg-------Kll~~~~~ad~~~v 207 (226)
++||+|+++.|.. +.|.+ .+++++.++ |++++-.+...+ ..+... +.+ .+.||.+++
T Consensus 105 ~~~Div~~~~p~~~~~~~~--~~~~~~~~~---~~v~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ad~ii~ 177 (412)
T PRK10307 105 WRPDRVIGVVPTLFCAPGA--RLLARLSGA---RTWLHIQDYEVDAAFGLGLLKGGKVARLATAFERSL--LRRFDNVST 177 (412)
T ss_pred CCCCEEEEeCCcHHHHHHH--HHHHHhhCC---CEEEEeccCCHHHHHHhCCccCcHHHHHHHHHHHHH--HhhCCEEEe
Confidence 7899999987643 33333 245788887 888653321100 011111 223 346999999
Q ss_pred echhhhhhC
Q 027253 208 QWPQLQRKY 216 (226)
Q Consensus 208 q~e~~~~~~ 216 (226)
.-+..++.+
T Consensus 178 ~S~~~~~~~ 186 (412)
T PRK10307 178 ISRSMMNKA 186 (412)
T ss_pred cCHHHHHHH
Confidence 988776543
No 49
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=95.45 E-value=0.19 Score=45.21 Aligned_cols=142 Identities=13% Similarity=0.164 Sum_probs=69.5
Q ss_pred eEEEEEe----cChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEE-EeecCccc
Q 027253 45 LSTLIVL----GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFM-QIYRSREV 119 (226)
Q Consensus 45 ~kiliv~----GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~-~i~r~r~~ 119 (226)
|||+++. +.||=-.-++.++++|.++++...++++..++........+ ..+. .++..+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~~~~~---------------~~~~~~~~~~~-- 63 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKAWLKE---------------IKYAQSFSNIK-- 63 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChHHHHh---------------cchhcccccch--
Confidence 6787772 34887777899999998874344566555554432111110 1110 011110
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhccc
Q 027253 120 GQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKL 199 (226)
Q Consensus 120 ~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~ 199 (226)
...+. ......+-.+++++++||+|+++.+..+ .++..+++..+.+ .+++.+..... .........+.
T Consensus 64 -~~~~~----~~~~~~~l~~~l~~~~~Dii~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~h~~~---~~~~~~~~~~~ 131 (359)
T PRK09922 64 -LSFLR----RAKHVYNFSKWLKETQPDIVICIDVISC---LYANKARKKSGKQ-FKIFSWPHFSL---DHKKHAECKKI 131 (359)
T ss_pred -hhhhc----ccHHHHHHHHHHHhcCCCEEEEcCHHHH---HHHHHHHHHhCCC-CeEEEEecCcc---cccchhhhhhh
Confidence 00000 0112233346788899999999876432 3333445666751 13333222211 11111111012
Q ss_pred CCccEEEeechhhhhh
Q 027253 200 CIADQFFVQWPQLQRK 215 (226)
Q Consensus 200 ~~ad~~~vq~e~~~~~ 215 (226)
..+|.+++.-+.+++.
T Consensus 132 ~~~d~~i~~S~~~~~~ 147 (359)
T PRK09922 132 TCADYHLAISSGIKEQ 147 (359)
T ss_pred hcCCEEEEcCHHHHHH
Confidence 4788888877666543
No 50
>PLN02448 UDP-glycosyltransferase family protein
Probab=95.27 E-value=0.3 Score=46.23 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=30.5
Q ss_pred CCCCCeEEEEE-ecChhhHHHHHHHHHHhhhc--CCCCeEEE
Q 027253 40 KSPQPLSTLIV-LGSGGHTAEMMNLLSVLQMD--RFTPRFYI 78 (226)
Q Consensus 40 ~~~~~~kiliv-~GtGGH~~p~lal~~~l~~~--~~~~~~~~ 78 (226)
.+..+.||+++ -++=||+.|++++++.|..+ ++. .+++
T Consensus 6 ~~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~-VT~~ 46 (459)
T PLN02448 6 SPTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDIL-ITFV 46 (459)
T ss_pred CCCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcE-EEEE
Confidence 34556899999 89999999999999999876 654 4444
No 51
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=95.27 E-value=0.35 Score=42.61 Aligned_cols=115 Identities=15% Similarity=0.091 Sum_probs=70.3
Q ss_pred hhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHHH
Q 027253 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (226)
Q Consensus 54 GGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~~ 133 (226)
.||+.-+++||++|++++++ +.|+.+.+.... . +.+ .+ .+++...++....+ ...
T Consensus 14 ~GHv~Rcl~LA~~l~~~g~~--v~f~~~~~~~~~--~----~~i-~~-----~g~~v~~~~~~~~~-----------~~d 68 (279)
T TIGR03590 14 LGHVMRCLTLARALHAQGAE--VAFACKPLPGDL--I----DLL-LS-----AGFPVYELPDESSR-----------YDD 68 (279)
T ss_pred ccHHHHHHHHHHHHHHCCCE--EEEEeCCCCHHH--H----HHH-HH-----cCCeEEEecCCCch-----------hhh
Confidence 59999999999999876654 555555443321 1 111 11 24566666543321 012
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccEEEeechh
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQFFVQWPQ 211 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~vq~e~ 211 (226)
.-+...++.+.+||+||..+-.+.-...- ..|-.+. +++++|..+. + ...||.++.+-+.
T Consensus 69 ~~~~~~~l~~~~~d~vV~D~y~~~~~~~~---~~k~~~~---~l~~iDD~~~--------~----~~~~D~vin~~~~ 128 (279)
T TIGR03590 69 ALELINLLEEEKFDILIVDHYGLDADWEK---LIKEFGR---KILVIDDLAD--------R----PHDCDLLLDQNLG 128 (279)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCHHHHH---HHHHhCC---eEEEEecCCC--------C----CcCCCEEEeCCCC
Confidence 33456677888999999999766544331 1344565 9999999862 1 1257888888544
No 52
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=95.25 E-value=0.15 Score=45.07 Aligned_cols=77 Identities=16% Similarity=0.048 Sum_probs=48.9
Q ss_pred HHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE--EccCCccCC-cch---------hhhhhccc
Q 027253 132 LATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY--VESIARVKR-LSL---------SGLLLYKL 199 (226)
Q Consensus 132 ~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~--~Esnarv~~-~sl---------tgKll~~~ 199 (226)
....+...++++.+||+|.++++..+.+.+ .+++.+|+ |+++ |+++..... ... .-+.+ .
T Consensus 69 ~~~~~~~~~~~~~~~dvvh~~~~~~~~~~~---~~~~~~~~---p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 140 (367)
T cd05844 69 GSAPQLRRLLRRHRPDLVHAHFGFDGVYAL---PLARRLGV---PLVVTFHGFDATTSLALLLRSRWALYARRRRRL--A 140 (367)
T ss_pred ccccHHHHHHHhhCCCEEEeccCchHHHHH---HHHHHcCC---CEEEEEeCccccccchhhcccchhHHHHHHHHH--H
Confidence 334455557888999999999887666655 34688898 8887 765432111 111 11233 3
Q ss_pred CCccEEEeechhhhhhC
Q 027253 200 CIADQFFVQWPQLQRKY 216 (226)
Q Consensus 200 ~~ad~~~vq~e~~~~~~ 216 (226)
+.+|.+++.-+..++.+
T Consensus 141 ~~~d~ii~~s~~~~~~~ 157 (367)
T cd05844 141 RRAALFIAVSQFIRDRL 157 (367)
T ss_pred HhcCEEEECCHHHHHHH
Confidence 56899998887766543
No 53
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=95.24 E-value=0.66 Score=40.18 Aligned_cols=109 Identities=10% Similarity=-0.002 Sum_probs=61.2
Q ss_pred eEEEEEe---------cChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeec
Q 027253 45 LSTLIVL---------GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYR 115 (226)
Q Consensus 45 ~kiliv~---------GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r 115 (226)
|||++++ ..||--.-...+++.|.+.+++ +.+++..+....... .... +.
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~--V~v~~~~~~~~~~~~-----------------~~~~--~~ 59 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHE--VTLFASGDSKTAAPL-----------------VPVV--PE 59 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCce--EEEEecCCCCcccce-----------------eecc--CC
Confidence 6888773 5688888889999999887765 445444433211000 0000 00
Q ss_pred CccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCc
Q 027253 116 SREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIAR 185 (226)
Q Consensus 116 ~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnar 185 (226)
... ..................+++++.+||+|.+++...... +++..++ |+++.-....
T Consensus 60 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Divh~~~~~~~~~------~~~~~~~---~~v~~~h~~~ 118 (335)
T cd03802 60 PLR--LDAPGRDRAEAEALALAERALAAGDFDIVHNHSLHLPLP------FARPLPV---PVVTTLHGPP 118 (335)
T ss_pred Ccc--cccchhhHhhHHHHHHHHHHHhcCCCCEEEecCcccchh------hhcccCC---CEEEEecCCC
Confidence 000 000011122233344555677889999999999886644 2466676 8877655543
No 54
>PLN02949 transferase, transferring glycosyl groups
Probab=95.15 E-value=0.79 Score=43.52 Aligned_cols=124 Identities=14% Similarity=0.109 Sum_probs=63.4
Q ss_pred CeEEEEE---ecCh-hhHHHHHHHHHHhhhcCCCC-eEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCc-
Q 027253 44 PLSTLIV---LGSG-GHTAEMMNLLSVLQMDRFTP-RFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSR- 117 (226)
Q Consensus 44 ~~kiliv---~GtG-GH~~p~lal~~~l~~~~~~~-~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r- 117 (226)
+++|.++ +|.| |=--=....+..+++.+.+. .+.+++..|.-..+......+.+. -..+ ....|+.+.+..
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~--i~~~-~~~~~v~l~~~~~ 109 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFG--VELL-SPPKVVHLRKRKW 109 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcc--eecC-CCceEEEeccccc
Confidence 4789888 6666 55445566666676655432 344444433322221111111110 0000 112333331110
Q ss_pred --cccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEec-CCCcchhHHHHHHHHHHcCCccceEEE
Q 027253 118 --EVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCN-GPGTCIPLCVIAFLFKVIGIRWSSIFY 179 (226)
Q Consensus 118 --~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~t-Gg~vsvP~~lAa~lakllgi~~~~iv~ 179 (226)
......++.+...+++++.++..+.+..||+.+=| |-..++|++ ++++. |++.
T Consensus 110 ~~~~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~pl~------~~~~~---~v~~ 165 (463)
T PLN02949 110 IEEETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYPLA------RLFGC---KVVC 165 (463)
T ss_pred cccccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHHHH------HhcCC---cEEE
Confidence 00123455667788888888888888899988854 444555643 56665 6543
No 55
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=95.11 E-value=0.46 Score=44.13 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=92.8
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcC-CCCeEEEEEcCC--cchhhHHHHhhhhhhhhcccCCcceEEEEeecCccc
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAATD--NMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREV 119 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~-~~~~~~~~~~~d--~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~ 119 (226)
+++|||++-||==-+.=|-.+..++++++ ++..+..+|... .|.......++ ...-.++ ..+-..+
T Consensus 2 ~~~Kv~~I~GTRPE~iKmapli~~~~~~~~~~~~vi~TGQH~d~em~~~~le~~~--------i~~pdy~-L~i~~~~-- 70 (383)
T COG0381 2 KMLKVLTIFGTRPEAIKMAPLVKALEKDPDFELIVIHTGQHRDYEMLDQVLELFG--------IRKPDYD-LNIMKPG-- 70 (383)
T ss_pred CceEEEEEEecCHHHHHHhHHHHHHHhCCCCceEEEEecccccHHHHHHHHHHhC--------CCCCCcc-hhccccC--
Confidence 46899999999887777777777887664 553344434332 23222222211 0000111 1222222
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccC---Ccchhhhhh
Q 027253 120 GQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVK---RLSLSGLLL 196 (226)
Q Consensus 120 ~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~---~~sltgKll 196 (226)
++.-.. +.+.+...-+++.+++||+|+-=|--++--.+ |.+|...+| |+..+|-=-|.. -|.-.||.+
T Consensus 71 -~tl~~~---t~~~i~~~~~vl~~~kPD~VlVhGDT~t~lA~--alaa~~~~I---pV~HvEAGlRt~~~~~PEE~NR~l 141 (383)
T COG0381 71 -QTLGEI---TGNIIEGLSKVLEEEKPDLVLVHGDTNTTLAG--ALAAFYLKI---PVGHVEAGLRTGDLYFPEEINRRL 141 (383)
T ss_pred -CCHHHH---HHHHHHHHHHHHHhhCCCEEEEeCCcchHHHH--HHHHHHhCC---ceEEEecccccCCCCCcHHHHHHH
Confidence 222221 22333344467779999999999976653211 345778888 999999755421 366668777
Q ss_pred cccCCccEEEeechhhhhhC-----C--CceEEecc
Q 027253 197 YKLCIADQFFVQWPQLQRKY-----P--RAHYVGCL 225 (226)
Q Consensus 197 ~~~~~ad~~~vq~e~~~~~~-----p--~a~y~G~l 225 (226)
- +..||.-|+.-|..+++. | +.-++|+-
T Consensus 142 ~-~~~S~~hfapte~ar~nLl~EG~~~~~IfvtGnt 176 (383)
T COG0381 142 T-SHLSDLHFAPTEIARKNLLREGVPEKRIFVTGNT 176 (383)
T ss_pred H-HHhhhhhcCChHHHHHHHHHcCCCccceEEeCCh
Confidence 4 567888777777665542 3 24467763
No 56
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=95.06 E-value=1.8 Score=40.67 Aligned_cols=141 Identities=20% Similarity=0.198 Sum_probs=86.0
Q ss_pred EEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHH
Q 027253 48 LIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSV 127 (226)
Q Consensus 48 liv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~ 127 (226)
-+=+-|=|-+.-+..|.++|+++-.+.++.++.-+..-++.....+++ ......+|-.-.
T Consensus 53 WiHaaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~-----------~v~h~YlP~D~~--------- 112 (419)
T COG1519 53 WIHAASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGD-----------SVIHQYLPLDLP--------- 112 (419)
T ss_pred EEEecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCC-----------CeEEEecCcCch---------
Confidence 333899999999999999998875555666655333322222212221 122222332211
Q ss_pred HHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCC--------cchhhhhhccc
Q 027253 128 WTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKR--------LSLSGLLLYKL 199 (226)
Q Consensus 128 ~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~--------~sltgKll~~~ 199 (226)
....+.+++.+||++|-+=+-. =|..+- -++..|+ |++.+. +|.+. .+.-.|.+ .
T Consensus 113 -------~~v~rFl~~~~P~l~Ii~EtEl-WPnli~--e~~~~~~---p~~LvN--aRLS~rS~~~y~k~~~~~~~~--~ 175 (419)
T COG1519 113 -------IAVRRFLRKWRPKLLIIMETEL-WPNLIN--ELKRRGI---PLVLVN--ARLSDRSFARYAKLKFLARLL--F 175 (419)
T ss_pred -------HHHHHHHHhcCCCEEEEEeccc-cHHHHH--HHHHcCC---CEEEEe--eeechhhhHHHHHHHHHHHHH--H
Confidence 1224567788999998776553 255432 2677787 999984 44333 44445555 3
Q ss_pred CCccEEEeechhhhhhC-----CCceEEecc
Q 027253 200 CIADQFFVQWPQLQRKY-----PRAHYVGCL 225 (226)
Q Consensus 200 ~~ad~~~vq~e~~~~~~-----p~a~y~G~l 225 (226)
.-.|.++.|-|+-+++| ++.+.+|||
T Consensus 176 ~~i~li~aQse~D~~Rf~~LGa~~v~v~GNl 206 (419)
T COG1519 176 KNIDLILAQSEEDAQRFRSLGAKPVVVTGNL 206 (419)
T ss_pred HhcceeeecCHHHHHHHHhcCCcceEEecce
Confidence 45788999999988877 356788886
No 57
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=94.66 E-value=0.4 Score=41.36 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHHHhhhcCCC
Q 027253 53 SGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~ 73 (226)
+||+......+++.|.+.+++
T Consensus 13 ~~G~~~~~~~l~~~L~~~g~~ 33 (374)
T cd03817 13 VNGVATSIRRLAEELEKRGHE 33 (374)
T ss_pred CCCeehHHHHHHHHHHHcCCe
Confidence 589999999999999887765
No 58
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.59 E-value=0.22 Score=43.06 Aligned_cols=133 Identities=16% Similarity=0.105 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHHH
Q 027253 54 GGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLA 133 (226)
Q Consensus 54 GGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~~ 133 (226)
||+...+..++++|.+++++ +.+++.....+.... + . . ..+.....+..+.. .+. ...
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~--v~~~~~~~~~~~~~~---~----~--~---~~~~~~~~~~~~~~--~~~------~~~ 71 (364)
T cd03814 14 NGVVRTLQRLVEHLRARGHE--VLVIAPGPFRESEGP---A----R--V---VPVPSVPLPGYPEI--RLA------LPP 71 (364)
T ss_pred cceehHHHHHHHHHHHCCCE--EEEEeCCchhhccCC---C----C--c---eeecccccCcccce--Eec------ccc
Confidence 99999999999999988765 444443322211000 0 0 0 00111111111111 000 011
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCc------------chhhhhhcccCC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRL------------SLSGLLLYKLCI 201 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~------------sltgKll~~~~~ 201 (226)
...-.+.+++.+||+|+..-+..... .+..+++..++ |+++...+.--... ..-.+.+ .+.
T Consensus 72 ~~~~~~~~~~~~pdii~~~~~~~~~~--~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 144 (364)
T cd03814 72 RRRVRRLLDAFAPDVVHIATPGPLGL--AALRAARRLGI---PVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWF--HNR 144 (364)
T ss_pred hhhHHHHHHhcCCCEEEEeccchhhH--HHHHHHHHcCC---CEEEEEecChHHHhhhcccchHhHhhHHHHHHH--HHh
Confidence 22233445788999998774443221 12244677777 77654432200000 1223344 456
Q ss_pred ccEEEeechhhhhh
Q 027253 202 ADQFFVQWPQLQRK 215 (226)
Q Consensus 202 ad~~~vq~e~~~~~ 215 (226)
+|.+++..+...+.
T Consensus 145 ~d~i~~~s~~~~~~ 158 (364)
T cd03814 145 ADRVLVPSPSLADE 158 (364)
T ss_pred CCEEEeCCHHHHHH
Confidence 89999998887664
No 59
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=94.41 E-value=0.69 Score=41.41 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=25.7
Q ss_pred eEEEEE---ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 45 LSTLIV---LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv---~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
|||+++ .+.||=-.-+..+++.|.+++++ ...++
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~-V~v~~ 37 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHE-VTIYT 37 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCe-EEEEc
Confidence 688887 36788777888899999888876 44444
No 60
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=94.16 E-value=1.2 Score=38.96 Aligned_cols=135 Identities=19% Similarity=0.184 Sum_probs=68.2
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHH
Q 027253 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~ 132 (226)
+||=-.-+..+++.|.+.+++ ...+ ...+..... ..+ ..++.+..++..+.. .......-+.
T Consensus 14 ~gG~~~~~~~la~~L~~~g~~-v~v~-~~~~~~~~~---~~~----------~~~i~~~~~~~~~~~---~~~~~~~~~~ 75 (363)
T cd04955 14 YGGFETFVEELAPRLVARGHE-VTVY-CRSPYPKQK---ETE----------YNGVRLIHIPAPEIG---GLGTIIYDIL 75 (363)
T ss_pred cCcHHHHHHHHHHHHHhcCCC-EEEE-EccCCCCCc---ccc----------cCCceEEEcCCCCcc---chhhhHHHHH
Confidence 466666678899999988876 3333 333222110 000 124566666543311 1111111222
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCC----------cchhhhhhcccCCc
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKR----------LSLSGLLLYKLCIA 202 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~----------~sltgKll~~~~~a 202 (226)
.++++.+ .+.+||++.+.++.. .+.+ .+++..+. |+++.=....... .-...+.. .+.|
T Consensus 76 ~~~~~~~--~~~~~~~i~~~~~~~-~~~~---~~~~~~~~---~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~--~~~a 144 (363)
T cd04955 76 AILHALF--VKRDIDHVHALGPAI-APFL---PLLRLKGK---KVVVNMDGLEWKRAKWGRPAKRYLKFGEKLA--VKFA 144 (363)
T ss_pred HHHHHHh--ccCCeEEEEecCccH-HHHH---HHHHhcCC---CEEEEccCcceeecccccchhHHHHHHHHHH--Hhhc
Confidence 3333333 467889999888876 3333 33455565 7776432211111 11122344 4578
Q ss_pred cEEEeechhhhhhC
Q 027253 203 DQFFVQWPQLQRKY 216 (226)
Q Consensus 203 d~~~vq~e~~~~~~ 216 (226)
|.+++.-+.+++.+
T Consensus 145 d~ii~~s~~~~~~~ 158 (363)
T cd04955 145 DRLIADSPGIKEYL 158 (363)
T ss_pred cEEEeCCHHHHHHH
Confidence 99999887765443
No 61
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=94.00 E-value=0.52 Score=38.22 Aligned_cols=69 Identities=16% Similarity=0.211 Sum_probs=45.1
Q ss_pred HHhhHhcCCcEEEecCCCcchh-HHHHHHHHHHcCC-ccceEEEEccCCccCCcchhhhhhcccCCccEEEeechhhhhh
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIP-LCVIAFLFKVIGI-RWSSIFYVESIARVKRLSLSGLLLYKLCIADQFFVQWPQLQRK 215 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP-~~lAa~lakllgi-~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~vq~e~~~~~ 215 (226)
.+.|.+++||+||||=|..+-. +. .+ |..+. ++.|++.+=++-.. .-.-++ .+-+|..+|.-|++++.
T Consensus 82 ~~~l~~~~PD~IIsThp~~~~~~l~---~l-k~~~~~~~~p~~tvvTD~~~----~H~~W~--~~~~D~y~Vase~~~~~ 151 (169)
T PF06925_consen 82 IRLLREFQPDLIISTHPFPAQVPLS---RL-KRRGRLPNIPVVTVVTDFDT----VHPFWI--HPGVDRYFVASEEVKEE 151 (169)
T ss_pred HHHHhhcCCCEEEECCcchhhhHHH---HH-HHhhcccCCcEEEEEcCCCC----CCcCee--cCCCCEEEECCHHHHHH
Confidence 3567789999999999975443 33 22 22222 13487766665211 133456 67899999999998765
Q ss_pred C
Q 027253 216 Y 216 (226)
Q Consensus 216 ~ 216 (226)
.
T Consensus 152 l 152 (169)
T PF06925_consen 152 L 152 (169)
T ss_pred H
Confidence 4
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=93.98 E-value=0.93 Score=38.70 Aligned_cols=72 Identities=19% Similarity=0.089 Sum_probs=42.3
Q ss_pred HHhhH--hcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcch------hhhhhcccCCccEEEeec
Q 027253 138 LWLMV--KIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSL------SGLLLYKLCIADQFFVQW 209 (226)
Q Consensus 138 ~~il~--k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sl------tgKll~~~~~ad~~~vq~ 209 (226)
.+.++ +.+||+|+.+.+...... +..+++..++ |+++............ ..+.. .+.+|.+++.-
T Consensus 84 ~~~l~~~~~~~dii~~~~~~~~~~~--~~~~~~~~~~---~~i~~~h~~~~~~~~~~~~~~~~~~~~--~~~~d~ii~~s 156 (377)
T cd03798 84 LKLLKLKRFRPDLIHAHFAYPDGFA--AALLKRKLGI---PLVVTLHGSDVNLLPRKRLLRALLRRA--LRRADAVIAVS 156 (377)
T ss_pred HHHHhcccCCCCEEEEeccchHHHH--HHHHHHhcCC---CEEEEeecchhcccCchhhHHHHHHHH--HhcCCeEEeCC
Confidence 34555 789999999965543322 2244666776 7766544433222222 12334 45689988888
Q ss_pred hhhhhhC
Q 027253 210 PQLQRKY 216 (226)
Q Consensus 210 e~~~~~~ 216 (226)
+..++.+
T Consensus 157 ~~~~~~~ 163 (377)
T cd03798 157 EALADEL 163 (377)
T ss_pred HHHHHHH
Confidence 7776543
No 63
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=93.94 E-value=1 Score=39.02 Aligned_cols=75 Identities=19% Similarity=0.080 Sum_probs=41.6
Q ss_pred HHHHhhHhcCCcEEEecCCCcc-hhHHHHHHHH---HHcCCccceEEEEccCCccC----CcchhhhhhcccCCccEEEe
Q 027253 136 HALWLMVKIRPQVVLCNGPGTC-IPLCVIAFLF---KVIGIRWSSIFYVESIARVK----RLSLSGLLLYKLCIADQFFV 207 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vs-vP~~lAa~la---kllgi~~~~iv~~Esnarv~----~~sltgKll~~~~~ad~~~v 207 (226)
+..+.+++.+||+|+++-.+.. .|...+ .+. +..++ |++++..+.... ......+.+ .+.+|.+++
T Consensus 67 ~~~~~~~~~~~dii~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~i~~~h~~~~~~~~~~~~~~~~~~--~~~~d~ii~ 140 (366)
T cd03822 67 RAARAIRLSGPDVVVIQHEYGIFGGEAGL-YLLLLLRGLGI---PVVVTLHTVLLHEPRPGDRALLRLL--LRRADAVIV 140 (366)
T ss_pred HHHHHHhhcCCCEEEEeeccccccchhhH-HHHHHHhhcCC---CEEEEEecCCccccchhhhHHHHHH--HhcCCEEEE
Confidence 4456678889999998653221 122222 222 23565 887665553101 112233445 467999999
Q ss_pred e-chhhhhhC
Q 027253 208 Q-WPQLQRKY 216 (226)
Q Consensus 208 q-~e~~~~~~ 216 (226)
. .+...+.+
T Consensus 141 ~s~~~~~~~~ 150 (366)
T cd03822 141 MSSELLRALL 150 (366)
T ss_pred eeHHHHHHHH
Confidence 8 66666554
No 64
>PLN03007 UDP-glucosyltransferase family protein
Probab=93.31 E-value=2.5 Score=40.28 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=29.2
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
+.||+++ .-.-||+.|++.+++.|..+++. .+++++
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~-VT~vtt 41 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSRGAK-STILTT 41 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhCCCE-EEEEEC
Confidence 4699999 66779999999999999988865 555544
No 65
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=92.98 E-value=3.8 Score=35.52 Aligned_cols=81 Identities=9% Similarity=-0.068 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE--EccCCccCCcc-hhhhhhcccCCccE
Q 027253 128 WTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY--VESIARVKRLS-LSGLLLYKLCIADQ 204 (226)
Q Consensus 128 ~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~--~Esnarv~~~s-ltgKll~~~~~ad~ 204 (226)
+..+.......+.+++.+||+|.++.++.+..... ...++.++ |.++ |+.... .... ..-+.. .+.+|.
T Consensus 62 ~~~~~~~~~~~~~~~~~~~Dii~~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~ 133 (355)
T cd03799 62 LALLAQALVLARELRRLGIDHIHAHFGTTPATVAM--LASRLGGI---PYSFTAHGKDIF-RSPDAIDLDEK--LARADF 133 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEECCCCchHHHHH--HHHHhcCC---CEEEEEeccccc-ccCchHHHHHH--HhhCCE
Confidence 33334444455556778999999988864433322 23455565 6654 322211 1122 122333 356899
Q ss_pred EEeechhhhhhC
Q 027253 205 FFVQWPQLQRKY 216 (226)
Q Consensus 205 ~~vq~e~~~~~~ 216 (226)
+++.-+..++.+
T Consensus 134 vi~~s~~~~~~l 145 (355)
T cd03799 134 VVAISEYNRQQL 145 (355)
T ss_pred EEECCHHHHHHH
Confidence 999888776544
No 66
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.73 E-value=3 Score=38.67 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=69.7
Q ss_pred CCCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc
Q 027253 42 PQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (226)
Q Consensus 42 ~~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~ 120 (226)
+++.|++++ +|-=||.=-|.-=|..|.+.+|+ +=.+|-.++...+..-+ + .+++++.++..+..
T Consensus 10 ~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~--VdliGy~~s~p~e~l~~------h------prI~ih~m~~l~~~- 74 (444)
T KOG2941|consen 10 SKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQ--VDLIGYVESIPLEELLN------H------PRIRIHGMPNLPFL- 74 (444)
T ss_pred cccceEEEEEecccCCChHHHHHHHHHHHcCCe--EEEEEecCCCChHHHhc------C------CceEEEeCCCCccc-
Confidence 445667666 99999987776666666667876 44456666654433222 1 25788888643311
Q ss_pred chhHHHHHHHHHHHHHHHHhhH----hcCCcEEEecCCCcchhHHHHHHHH-HHcCCccceEEEEccC
Q 027253 121 QSYVTSVWTTLLATTHALWLMV----KIRPQVVLCNGPGTCIPLCVIAFLF-KVIGIRWSSIFYVESI 183 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~----k~kPdvVi~tGg~vsvP~~lAa~la-kllgi~~~~iv~~Esn 183 (226)
+..-+..+-.++.++|.+.++. ...||.++.--| .|+|..++|++. .+.|- |.++==-|
T Consensus 75 ~~~p~~~~l~lKvf~Qfl~Ll~aL~~~~~~~~ilvQNP-P~iPtliv~~~~~~l~~~---KfiIDWHN 138 (444)
T KOG2941|consen 75 QGGPRVLFLPLKVFWQFLSLLWALFVLRPPDIILVQNP-PSIPTLIVCVLYSILTGA---KFIIDWHN 138 (444)
T ss_pred CCCchhhhhHHHHHHHHHHHHHHHHhccCCcEEEEeCC-CCCchHHHHHHHHHHhcc---eEEEEehh
Confidence 2222222233344444443332 356777665544 578998887775 45553 66654334
No 67
>PRK10125 putative glycosyl transferase; Provisional
Probab=92.70 E-value=0.91 Score=42.15 Aligned_cols=120 Identities=9% Similarity=0.013 Sum_probs=63.9
Q ss_pred eEEEEE---ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcce-EEEEe-ecCccc
Q 027253 45 LSTLIV---LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSA-QFMQI-YRSREV 119 (226)
Q Consensus 45 ~kiliv---~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~-~~~~i-~r~r~~ 119 (226)
||||.+ +|.||----++.|++.+.+++++ ..++.++.++-+.... + +.+ ....+ ++....
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~-~~i~~~~~~~~~~~~~--------~------~~~~~~~~~~~~~~~~ 65 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLA-SHFVYGYGKGGKESVS--------H------QNYPQVIKHTPRMTAM 65 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCe-EEEEEecCCCcccccc--------c------CCcceEEEecccHHHH
Confidence 566643 89999999999999999988877 4455555544422110 0 011 11111 111110
Q ss_pred cchhH---HHHHHHHHHHHHHHHhh-HhcCCcEEEe---cCCCcchhHHHHH-HH--HHHcCCccceEEEEccC
Q 027253 120 GQSYV---TSVWTTLLATTHALWLM-VKIRPQVVLC---NGPGTCIPLCVIA-FL--FKVIGIRWSSIFYVESI 183 (226)
Q Consensus 120 ~~~~~---~~~~~~l~~~~~a~~il-~k~kPdvVi~---tGg~vsvP~~lAa-~l--akllgi~~~~iv~~Esn 183 (226)
.... .+....+.+.....+++ ++++||+|=. .|++.+++..+.. -+ ++..++ |+|+=.-+
T Consensus 66 -~~~~~~~~~~~~~~~~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~---piV~TlHd 135 (405)
T PRK10125 66 -ANIALFRLFNRDLFGNFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDV---TLVWTLHD 135 (405)
T ss_pred -HHHHHHHhcchhhcchHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCC---CEEEeccc
Confidence 0000 11112234555666656 5789999976 5677788765421 01 122344 88874443
No 68
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=91.84 E-value=1.6 Score=39.05 Aligned_cols=63 Identities=11% Similarity=-0.033 Sum_probs=39.5
Q ss_pred cCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccC-------------CcchhhhhhcccCCccEEEeech
Q 027253 144 IRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVK-------------RLSLSGLLLYKLCIADQFFVQWP 210 (226)
Q Consensus 144 ~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~-------------~~sltgKll~~~~~ad~~~vq~e 210 (226)
.+||+|-+++.+.++...+ ++++.++ |+++...+.... ......+.. .+.||.+++..+
T Consensus 82 ~~~divh~~~~~~~~~~~~---~~~~~~~---p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ad~vi~~S~ 153 (388)
T TIGR02149 82 VDADVVHSHTWYTFLAGHL---AKKLYDK---PLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTA--IEAADRVIAVSG 153 (388)
T ss_pred CCCCeEeecchhhhhHHHH---HHHhcCC---CEEEEeecccccccccccccccchhHHHHHHHHH--HhhCCEEEEccH
Confidence 4799999999776654443 3567787 888766553210 012223455 457899888887
Q ss_pred hhhh
Q 027253 211 QLQR 214 (226)
Q Consensus 211 ~~~~ 214 (226)
.+++
T Consensus 154 ~~~~ 157 (388)
T TIGR02149 154 GMRE 157 (388)
T ss_pred HHHH
Confidence 6543
No 69
>PLN02210 UDP-glucosyl transferase
Probab=91.81 E-value=2.5 Score=40.10 Aligned_cols=36 Identities=25% Similarity=0.289 Sum_probs=27.6
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHH--hhhcCCCCeEEEE
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSV--LQMDRFTPRFYIA 79 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~--l~~~~~~~~~~~~ 79 (226)
.+.||+++ --.-||+.|++.+++. |..++.. .+|++
T Consensus 7 ~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~-VT~v~ 45 (456)
T PLN02210 7 QETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLH-FTLAT 45 (456)
T ss_pred CCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcE-EEEEe
Confidence 34799999 7778999999999999 4466754 45544
No 70
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=91.58 E-value=1.8 Score=37.08 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=21.0
Q ss_pred cChhhHHHHHHHHHHhhhcCCCCeEEE
Q 027253 52 GSGGHTAEMMNLLSVLQMDRFTPRFYI 78 (226)
Q Consensus 52 GtGGH~~p~lal~~~l~~~~~~~~~~~ 78 (226)
..||+...+..+++.|.+.+++ ..++
T Consensus 12 ~~gG~~~~~~~l~~~L~~~g~~-v~v~ 37 (375)
T cd03821 12 KYGGPVRVVLNLSKALAKLGHE-VTVA 37 (375)
T ss_pred ccCCeehHHHHHHHHHHhcCCc-EEEE
Confidence 5799999999999999887876 3343
No 71
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.51 E-value=1.3 Score=35.42 Aligned_cols=40 Identities=15% Similarity=0.221 Sum_probs=28.1
Q ss_pred hHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCc
Q 027253 141 MVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIAR 185 (226)
Q Consensus 141 l~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnar 185 (226)
+++.+||+|++++++....... ...+..++ |+++...+..
T Consensus 47 ~~~~~~D~i~~~~~~~~~~~~~--~~~~~~~~---~~i~~~h~~~ 86 (229)
T cd01635 47 LRGFKPDVVHAHGYYPAPLALL--LAARLLGI---PLVLTVHGVN 86 (229)
T ss_pred HhhcCCCEEEEcCCCcHHHHHH--HHHhhCCC---CEEEEEcCcc
Confidence 3477999999999998766541 23566676 8887666653
No 72
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=91.50 E-value=0.99 Score=34.88 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=46.3
Q ss_pred ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcc--eEEEEeec-CccccchhHHHH
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSS--AQFMQIYR-SREVGQSYVTSV 127 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~--~~~~~i~r-~r~~~~~~~~~~ 127 (226)
.+.||=-.-+..++++|.+++++ ..+++...++.. + .. ......+. .+. ..
T Consensus 9 ~~~GG~e~~~~~l~~~l~~~G~~-v~v~~~~~~~~~-------~-----------~~~~~~~~~~~~~~~~-------~~ 62 (177)
T PF13439_consen 9 PNIGGAERVVLNLARALAKRGHE-VTVVSPGVKDPI-------E-----------EELVKIFVKIPYPIRK-------RF 62 (177)
T ss_dssp TSSSHHHHHHHHHHHHHHHTT-E-EEEEESS-TTS--------S-----------STEEEE---TT-SSTS-------S-
T ss_pred CCCChHHHHHHHHHHHHHHCCCE-EEEEEcCCCccc-------h-----------hhccceeeeeeccccc-------cc
Confidence 47899999999999999998876 333322211110 0 01 01111111 111 01
Q ss_pred HHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHH
Q 027253 128 WTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVI 163 (226)
Q Consensus 128 ~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lA 163 (226)
...+.......+.+++++||+|-+++........++
T Consensus 63 ~~~~~~~~~~~~~i~~~~~DiVh~~~~~~~~~~~~~ 98 (177)
T PF13439_consen 63 LRSFFFMRRLRRLIKKEKPDIVHIHGPPAFWIALLA 98 (177)
T ss_dssp -HHHHHHHHHHHHHHHHT-SEEECCTTHCCCHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCCeEEecccchhHHHHHh
Confidence 112223456667788899999999987766655543
No 73
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=91.41 E-value=4.5 Score=39.95 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHhhHhcCCcEEEe-cCCCcchhHHHHHHHHHHcCCccceEEEEccCC-ccCCcchhhhhhcccCCcc
Q 027253 126 SVWTTLLATTHALWLMVKIRPQVVLC-NGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA-RVKRLSLSGLLLYKLCIAD 203 (226)
Q Consensus 126 ~~~~~l~~~~~a~~il~k~kPdvVi~-tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna-rv~~~sltgKll~~~~~ad 203 (226)
...++.+..-+..+.+.+++||++|+ ==|+..+.+. ..+|-.|++ .|++|-=+-. =.=.++++.++- +.+|
T Consensus 291 ~l~~l~~~~~~l~~~i~~~kPD~vIlID~PgFNlrLA---K~lkk~Gi~-ipviyYVsPqVWAWR~~Rikki~---k~vD 363 (608)
T PRK01021 291 ALFKLWYRYRKLYKTILKTNPRTVICIDFPDFHFLLI---KKLRKRGYK-GKIVHYVCPSIWAWRPKRKTILE---KYLD 363 (608)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCCHHHH---HHHHhcCCC-CCEEEEECccceeeCcchHHHHH---HHhh
Confidence 44455555666667778899999998 4566666654 335666721 1565544321 001377776664 6899
Q ss_pred EEEeechhhhhhCC----CceEEec
Q 027253 204 QFFVQWPQLQRKYP----RAHYVGC 224 (226)
Q Consensus 204 ~~~vq~e~~~~~~p----~a~y~G~ 224 (226)
.+++=+|--.+.|. +++|+|.
T Consensus 364 ~ll~IfPFE~~~y~~~gv~v~yVGH 388 (608)
T PRK01021 364 LLLLILPFEQNLFKDSPLRTVYLGH 388 (608)
T ss_pred hheecCccCHHHHHhcCCCeEEECC
Confidence 98888876666663 4788884
No 74
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=90.74 E-value=2.5 Score=38.15 Aligned_cols=28 Identities=11% Similarity=0.074 Sum_probs=21.7
Q ss_pred ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
+..||.-.-...+++.|.+.+++ .++++
T Consensus 17 ~~~GG~e~~v~~la~~L~~~G~~-V~v~~ 44 (405)
T TIGR03449 17 GDAGGMNVYILETATELARRGIE-VDIFT 44 (405)
T ss_pred cCCCCceehHHHHHHHHhhCCCE-EEEEe
Confidence 34699999999999999988876 44443
No 75
>PLN00414 glycosyltransferase family protein
Probab=90.09 E-value=5.2 Score=37.88 Aligned_cols=36 Identities=11% Similarity=0.121 Sum_probs=27.7
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
++.|++++ .=.=||+.||+.+++.|..+++. .++++
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~-VT~vt 39 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHR-VTFFL 39 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCE-EEEEe
Confidence 45789988 54559999999999999887765 44443
No 76
>PLN02670 transferase, transferring glycosyl groups
Probab=89.16 E-value=6.6 Score=37.56 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=27.7
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
+.||+++ -=.=||+.||+.+++.|..+++. .++++
T Consensus 6 ~~HVvl~P~paqGHi~P~l~LAk~La~~G~~-vT~v~ 41 (472)
T PLN02670 6 VLHVAMFPWLAMGHLIPFLRLSKLLAQKGHK-ISFIS 41 (472)
T ss_pred CcEEEEeCChhhhHHHHHHHHHHHHHhCCCE-EEEEe
Confidence 4689998 66669999999999999877765 44443
No 77
>PLN02208 glycosyltransferase family protein
Probab=88.83 E-value=11 Score=35.53 Aligned_cols=35 Identities=11% Similarity=0.175 Sum_probs=27.7
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
+.|++++ -=.-||+.|++++|+.|..+++. .++++
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~G~~-VT~vt 39 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEKGHR-VTFLL 39 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhCCCE-EEEEe
Confidence 4688888 55669999999999999887765 45544
No 78
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=87.47 E-value=3 Score=36.36 Aligned_cols=29 Identities=24% Similarity=0.218 Sum_probs=24.6
Q ss_pred eEEEEE---ecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIV---LGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv---~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|||+++ .+.||+-..+..++++|.+.+++
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~ 32 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVD 32 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCc
Confidence 788887 35599999999999999988766
No 79
>PRK06849 hypothetical protein; Provisional
Probab=86.84 E-value=5.3 Score=36.59 Aligned_cols=86 Identities=13% Similarity=0.139 Sum_probs=46.6
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccc
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQ 121 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~ 121 (226)
+.+++|||+||+.+ .++.+++.|.+.++. ++.+.+. ...... .++.. -.++.+|.++....
T Consensus 2 ~~~~~VLI~G~~~~---~~l~iar~l~~~G~~--Vi~~d~~-~~~~~~----~s~~~---------d~~~~~p~p~~d~~ 62 (389)
T PRK06849 2 NTKKTVLITGARAP---AALELARLFHNAGHT--VILADSL-KYPLSR----FSRAV---------DGFYTIPSPRWDPD 62 (389)
T ss_pred CCCCEEEEeCCCcH---HHHHHHHHHHHCCCE--EEEEeCC-chHHHH----HHHhh---------hheEEeCCCCCCHH
Confidence 35689999977766 467777788777654 5554332 221110 11111 12344543332111
Q ss_pred hhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCc
Q 027253 122 SYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGT 156 (226)
Q Consensus 122 ~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~v 156 (226)
.+.. .-..+++++++|+||.+...+
T Consensus 63 ~~~~----------~L~~i~~~~~id~vIP~~e~~ 87 (389)
T PRK06849 63 AYIQ----------ALLSIVQRENIDLLIPTCEEV 87 (389)
T ss_pred HHHH----------HHHHHHHHcCCCEEEECChHH
Confidence 1222 113467889999999988753
No 80
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=86.67 E-value=17 Score=34.81 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=29.6
Q ss_pred CCCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 42 PQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 42 ~~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
.++.|++++ -=.-||+.||+.+++.|..+++. .++++
T Consensus 7 ~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~-VTfv~ 44 (477)
T PLN02863 7 PAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLT-ITVLV 44 (477)
T ss_pred CCCCEEEEecCcccchHHHHHHHHHHHHhCCCE-EEEEe
Confidence 456899999 77889999999999999877764 44443
No 81
>PLN02534 UDP-glycosyltransferase
Probab=85.24 E-value=21 Score=34.28 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=28.0
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
++.|++++ -=.=||+.||+.+++.|..+++. .++++
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~-vT~v~ 43 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVI-VSLVT 43 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCe-EEEEE
Confidence 34799999 55569999999999999877765 45543
No 82
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=84.86 E-value=4.1 Score=35.14 Aligned_cols=86 Identities=10% Similarity=-0.055 Sum_probs=44.3
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHH
Q 027253 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~ 132 (226)
.||--.-+..++++|.+.+.. .++++...+....... . ..........+. .. .......
T Consensus 14 ~gG~~~~~~~l~~~L~~~~~~-v~~~~~~~~~~~~~~~----~-----------~~~~~~~~~~~~--~~---~~~~~~~ 72 (365)
T cd03809 14 PTGIGRYARELLRALLKLDPE-EVLLLLPGAPGLLLLP----L-----------RAALRLLLRLPR--RL---LWGLLFL 72 (365)
T ss_pred CCcHHHHHHHHHHHHHhcCCc-eEEEEecCcccccccc----c-----------hhcccccccccc--cc---ccchhhH
Confidence 477777789999999887765 4444444332211100 0 000100111100 00 1112223
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchh
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIP 159 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP 159 (226)
..+.....+.+.+||+++++.+....+
T Consensus 73 ~~~~~~~~~~~~~~Dii~~~~~~~~~~ 99 (365)
T cd03809 73 LRAGDRLLLLLLGLDLLHSPHNTAPLL 99 (365)
T ss_pred HHHHHHHHhhhcCCCeeeecccccCcc
Confidence 344445556668999999999987665
No 83
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=84.19 E-value=7.9 Score=34.55 Aligned_cols=94 Identities=6% Similarity=-0.010 Sum_probs=49.2
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCC-eEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTP-RFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~-~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~ 120 (226)
.++||+.+.++.+||-.+++.-+. +...... ...++++..+... . +.+ .++++..++......
T Consensus 87 ~~~~ri~vl~Sg~g~nl~al~~~~--~~~~~~~~i~~visn~~~~~~-l--------A~~-----~gIp~~~~~~~~~~~ 150 (286)
T PRK13011 87 AARPKVLIMVSKFDHCLNDLLYRW--RIGELPMDIVGVVSNHPDLEP-L--------AAW-----HGIPFHHFPITPDTK 150 (286)
T ss_pred ccCceEEEEEcCCcccHHHHHHHH--HcCCCCcEEEEEEECCccHHH-H--------HHH-----hCCCEEEeCCCcCch
Confidence 456899988777898888765543 3322222 3444454332211 1 112 235555554321100
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
..+ -.+....+++.+||+++..|=.--+|.-
T Consensus 151 ~~~----------~~~~~~~l~~~~~Dlivlagy~~il~~~ 181 (286)
T PRK13011 151 PQQ----------EAQVLDVVEESGAELVVLARYMQVLSPE 181 (286)
T ss_pred hhh----------HHHHHHHHHHhCcCEEEEeChhhhCCHH
Confidence 000 1123456778899999998766555554
No 84
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=84.11 E-value=6.5 Score=35.21 Aligned_cols=94 Identities=11% Similarity=0.025 Sum_probs=51.3
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCC-eEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTP-RFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~-~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~ 120 (226)
++++|+.+..+..||-.+++--+- +...+.. ...++++..+. .+.+ .+ .++++..++......
T Consensus 91 ~~~~kiavl~Sg~g~nl~al~~~~--~~~~l~~~i~~visn~~~~-~~~A--------~~-----~gIp~~~~~~~~~~~ 154 (289)
T PRK13010 91 GQRPKVVIMVSKFDHCLNDLLYRW--RMGELDMDIVGIISNHPDL-QPLA--------VQ-----HDIPFHHLPVTPDTK 154 (289)
T ss_pred CCCeEEEEEEeCCCccHHHHHHHH--HCCCCCcEEEEEEECChhH-HHHH--------HH-----cCCCEEEeCCCcccc
Confidence 456899888777799888766553 3333322 44444544333 1211 11 245666554321100
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
..+ --+....+++.+||+++..|=.--+|.-
T Consensus 155 ~~~----------~~~~~~~l~~~~~Dlivlagym~il~~~ 185 (289)
T PRK13010 155 AQQ----------EAQILDLIETSGAELVVLARYMQVLSDD 185 (289)
T ss_pred cch----------HHHHHHHHHHhCCCEEEEehhhhhCCHH
Confidence 000 0123456788999999998876666544
No 85
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=83.57 E-value=7.9 Score=36.50 Aligned_cols=38 Identities=13% Similarity=0.100 Sum_probs=27.2
Q ss_pred eEEEEEecChhh----HHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 45 LSTLIVLGSGGH----TAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 45 ~kiliv~GtGGH----~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
|||+|+|.+|.+ -+=+.++.+.|+++..+..+.+.+..
T Consensus 1 ~~i~i~G~~g~~N~GdeAil~~ii~~l~~~~p~~~i~v~S~~ 42 (426)
T PRK10017 1 MKLLILGNHTCGNRGDSAILRGLLDAINILNPHAEVDVMSRY 42 (426)
T ss_pred CeEEEEccccCCCccHHHHHHHHHHHHHhhCCCCeEEEEecC
Confidence 789999877765 44456788888887766666666554
No 86
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=83.12 E-value=9 Score=31.43 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=15.6
Q ss_pred HHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 136 HALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
+....+++.+||++++.|=+-=+|--
T Consensus 70 ~~~~~l~~~~~Dl~v~~~~~~il~~~ 95 (181)
T PF00551_consen 70 ELLELLESLNPDLIVVAGYGRILPKE 95 (181)
T ss_dssp HHHHHHHHTT-SEEEESS-SS---HH
T ss_pred HHHHHHHhhccceeehhhhHHHhhhh
Confidence 34567788999999998855445544
No 87
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=82.92 E-value=9.1 Score=34.14 Aligned_cols=94 Identities=10% Similarity=0.094 Sum_probs=49.4
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCC-eEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTP-RFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~-~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~ 120 (226)
.+++|+.+.++.+||-.+++-= ..+...... ...++++.+.... . +.+ .++++..++......
T Consensus 87 ~~~~ri~vl~Sg~gsnl~al~~--~~~~~~~~~~i~~visn~~~~~~-l--------A~~-----~gIp~~~~~~~~~~~ 150 (286)
T PRK06027 87 AERKRVVILVSKEDHCLGDLLW--RWRSGELPVEIAAVISNHDDLRS-L--------VER-----FGIPFHHVPVTKETK 150 (286)
T ss_pred ccCcEEEEEEcCCCCCHHHHHH--HHHcCCCCcEEEEEEEcChhHHH-H--------HHH-----hCCCEEEeccCcccc
Confidence 4568998887777888877543 333322222 4455555443321 1 112 245565554321100
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
..+ -.+....+++.+||+++..|=.--+|.-
T Consensus 151 ~~~----------~~~~~~~l~~~~~Dlivlagy~~il~~~ 181 (286)
T PRK06027 151 AEA----------EARLLELIDEYQPDLVVLARYMQILSPD 181 (286)
T ss_pred chh----------HHHHHHHHHHhCCCEEEEecchhhcCHH
Confidence 001 0122456778899999998855555543
No 88
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=82.64 E-value=8.6 Score=34.23 Aligned_cols=94 Identities=7% Similarity=0.022 Sum_probs=52.0
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCC-eEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTP-RFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~-~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~ 120 (226)
++++|+.+..+.+||-.+++.- ..+...... ...++++..+... .+ .+ .++++..++......
T Consensus 82 ~~~~ki~vl~Sg~g~nl~~l~~--~~~~g~l~~~i~~visn~~~~~~-~A--------~~-----~gIp~~~~~~~~~~~ 145 (280)
T TIGR00655 82 DKLKRVAILVSKEDHCLGDLLW--RWYSGELDAEIALVISNHEDLRS-LV--------ER-----FGIPFHYIPATKDNR 145 (280)
T ss_pred CCCcEEEEEEcCCChhHHHHHH--HHHcCCCCcEEEEEEEcChhHHH-HH--------HH-----hCCCEEEcCCCCcch
Confidence 4568998888778998887654 443333322 4455555444322 11 12 245666555422100
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
..+ --+....+++.+||+++..|=.--+|.-
T Consensus 146 ~~~----------e~~~~~~l~~~~~Dlivlagym~il~~~ 176 (280)
T TIGR00655 146 VEH----------EKRQLELLKQYQVDLVVLAKYMQILSPD 176 (280)
T ss_pred hhh----------HHHHHHHHHHhCCCEEEEeCchhhCCHH
Confidence 000 1123466788999999998866666554
No 89
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=82.56 E-value=23 Score=33.98 Aligned_cols=36 Identities=14% Similarity=0.119 Sum_probs=27.1
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhh-hcCCCCeEEEEEcC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQ-MDRFTPRFYIAAAT 82 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~-~~~~~~~~~~~~~~ 82 (226)
.||+++ .-.=||+.|++.+++.|. .+++. +.++.+.
T Consensus 6 pHVvl~P~paqGHi~P~l~LAk~La~~~g~~--vT~v~t~ 43 (481)
T PLN02992 6 PHAAMFSSPGMGHVIPVIELGKRLSANHGFH--VTVFVLE 43 (481)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCCCcE--EEEEeCC
Confidence 588888 777899999999999996 55654 4444444
No 90
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=82.34 E-value=15 Score=33.49 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=23.1
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.+....+++.++|+||+-|||..+=.+
T Consensus 68 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~A 96 (370)
T cd08551 68 NVDAAVAAYREEGCDGVIAVGGGSVLDTA 96 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 44456667778899999999999887665
No 91
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=80.83 E-value=20 Score=32.73 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
+-+....++++++|+||+-|||.++=.+=++ +-+.++ |++-+=+-+
T Consensus 73 v~~~~~~~~~~~~d~IIavGGGsv~D~aK~i--A~~~~~---p~i~IPTta 118 (366)
T PRK09423 73 IDRLVAIAEENGCDVVIGIGGGKTLDTAKAV--ADYLGV---PVVIVPTIA 118 (366)
T ss_pred HHHHHHHHHhcCCCEEEEecChHHHHHHHHH--HHHcCC---CEEEeCCcc
Confidence 3456667788899999999999887665432 444576 777776543
No 92
>PLN03015 UDP-glucosyl transferase
Probab=80.68 E-value=20 Score=34.26 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=25.8
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc-CCCCeEEEEE
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD-RFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~-~~~~~~~~~~ 80 (226)
.|++++ .=.-||+.||+.+++.|..+ +.. .++++.
T Consensus 4 pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~-vT~v~t 40 (470)
T PLN03015 4 PHALLVASPGLGHLIPILELGNRLSSVLNIH-VTILAV 40 (470)
T ss_pred cEEEEECCcccccHHHHHHHHHHHHhCCCCe-EEEEEC
Confidence 378888 66669999999999999754 544 444433
No 93
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=80.46 E-value=12 Score=31.20 Aligned_cols=24 Identities=8% Similarity=-0.067 Sum_probs=17.6
Q ss_pred HHhhHhcCCcEEEecCCCcchhHH
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
...+++.+||++++.|=.--+|.-
T Consensus 72 ~~~l~~~~~D~iv~~~~~~il~~~ 95 (190)
T TIGR00639 72 IEELRAHEVDLVVLAGFMRILGPT 95 (190)
T ss_pred HHHHHhcCCCEEEEeCcchhCCHH
Confidence 456778899999998866555543
No 94
>PLN02562 UDP-glycosyltransferase
Probab=80.36 E-value=27 Score=33.00 Aligned_cols=36 Identities=19% Similarity=0.347 Sum_probs=27.2
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
.||+++ -=.=||+.||+.+++.|..+++. .+ ++.+.
T Consensus 7 ~HVVlvPfPaqGHi~PmL~LAk~Las~G~~-VT-~vtt~ 43 (448)
T PLN02562 7 PKIILVPYPAQGHVTPMLKLASAFLSRGFE-PV-VITPE 43 (448)
T ss_pred cEEEEEcCccccCHHHHHHHHHHHHhCCCE-EE-EEeCc
Confidence 489988 55569999999999999877754 44 44443
No 95
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=80.32 E-value=16 Score=30.77 Aligned_cols=23 Identities=13% Similarity=0.107 Sum_probs=16.2
Q ss_pred HHhhHhcCCcEEEecCCCcchhH
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPL 160 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~ 160 (226)
...+++.+||++++.|=.--+|.
T Consensus 73 ~~~l~~~~~D~iv~~~~~~ii~~ 95 (200)
T PRK05647 73 VEALDAYQPDLVVLAGFMRILGP 95 (200)
T ss_pred HHHHHHhCcCEEEhHHhhhhCCH
Confidence 34567789999998775555554
No 96
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=80.23 E-value=4.8 Score=36.33 Aligned_cols=35 Identities=14% Similarity=0.139 Sum_probs=22.8
Q ss_pred hcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEc
Q 027253 143 KIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVE 181 (226)
Q Consensus 143 k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~E 181 (226)
.-.||+||++|..+..+.. .+.+..|= ++++|++=
T Consensus 55 ~~~pdLiIsaGr~t~~~~~---~l~r~~gg-~~~~V~i~ 89 (311)
T PF06258_consen 55 PPWPDLIISAGRRTAPAAL---ALRRASGG-RTKTVQIM 89 (311)
T ss_pred CCCCcEEEECCCchHHHHH---HHHHHcCC-CceEEEEc
Confidence 3569999999999875544 34666651 12555553
No 97
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=80.19 E-value=23 Score=31.68 Aligned_cols=46 Identities=15% Similarity=0.217 Sum_probs=31.5
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHc--CCccceEEEEccC
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVI--GIRWSSIFYVESI 183 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakll--gi~~~~iv~~Esn 183 (226)
.+.+....+++.++|+||+-|||.++=.+=++ +-.. ++ |++.+=+-
T Consensus 66 ~v~~~~~~~~~~~~d~IIaiGGGs~~D~aK~i--a~~~~~~~---p~i~iPTt 113 (332)
T cd07766 66 EVKEAVERARAAEVDAVIAVGGGSTLDTAKAV--AALLNRGL---PIIIVPTT 113 (332)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCchHHHHHHHH--HHHhcCCC---CEEEEeCC
Confidence 34455666777899999999999988666432 3333 66 77766544
No 98
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=79.70 E-value=54 Score=30.70 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=40.7
Q ss_pred cceEEEEee-----cCccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCC-cchhHHHHHHHHHHcCC
Q 027253 106 SSAQFMQIY-----RSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPG-TCIPLCVIAFLFKVIGI 172 (226)
Q Consensus 106 ~~~~~~~i~-----r~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~-vsvP~~lAa~lakllgi 172 (226)
.++.|+.+. .++. ..-++-++..+.+++-++..+.|+-||+-|-|=|| .+.|+. .++-++
T Consensus 108 ~nI~Fi~Lk~R~lVea~~--~~hfTllgQaigsmIl~~Eai~r~~Pdi~IDtMGY~fs~p~~-----r~l~~~ 173 (465)
T KOG1387|consen 108 DNIFFIYLKLRYLVEAST--WKHFTLLGQAIGSMILAFEAIIRFPPDIFIDTMGYPFSYPIF-----RRLRRI 173 (465)
T ss_pred cceEEEEEEeeeeeeccc--ccceehHHHHHHHHHHHHHHHHhCCchheEecCCCcchhHHH-----HHHccC
Confidence 456666553 2333 33456666777888888899999999998877666 455544 456676
No 99
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=78.45 E-value=24 Score=32.77 Aligned_cols=124 Identities=15% Similarity=0.140 Sum_probs=57.6
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCCcc--hhhHHHHhhhhhhhhcccCCcceEEEEeecCcccc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATDNM--SLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVG 120 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d~~--s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~ 120 (226)
++++.--...||=-..+..++++|.++++ ..+..++...+.- ........+. . ..++.++.++..+...
T Consensus 16 ~~~~~~~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~-~-------~~gv~v~r~~~~~~~~ 87 (439)
T TIGR02472 16 DLELGRDADTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIER-I-------APGARIVRLPFGPRRY 87 (439)
T ss_pred ccccCCCCCCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeE-e-------CCCcEEEEecCCCCCC
Confidence 35443223457766777778888887764 2355555321110 0000000000 0 0246666665321110
Q ss_pred chhHHHHHHHHHHH-HHHHHhhHhc--CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 121 QSYVTSVWTTLLAT-THALWLMVKI--RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 121 ~~~~~~~~~~l~~~-~~a~~il~k~--kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
.+ .......+..+ ....+.++++ +||+|-+.+... ..+++++++..++ |+|+...
T Consensus 88 ~~-~~~~~~~~~~~~~~l~~~~~~~~~~~DvIH~h~~~~---~~~~~~~~~~~~~---p~V~t~H 145 (439)
T TIGR02472 88 LR-KELLWPYLDELADNLLQHLRQQGHLPDLIHAHYADA---GYVGARLSRLLGV---PLIFTGH 145 (439)
T ss_pred cC-hhhhhhhHHHHHHHHHHHHHHcCCCCCEEEEcchhH---HHHHHHHHHHhCC---CEEEecc
Confidence 11 11111111122 2233445543 799999987543 3334455788887 8876544
No 100
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=78.10 E-value=19 Score=30.57 Aligned_cols=92 Identities=10% Similarity=0.071 Sum_probs=46.6
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCC-eEEEEEcCCcchh-hHHHHhhhhhhhhcccCCcceEEEEeecCccccchh
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTP-RFYIAAATDNMSL-QKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~-~~~~~~~~d~~s~-~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~ 123 (226)
||++-.+.+|+-.++ |.+.+++..... ..+++++...... +.+ .+ .++++..++..+......
T Consensus 1 ki~vl~Sg~Gsn~~a--l~~~~~~~~l~~~i~~visn~~~~~~~~~A--------~~-----~gIp~~~~~~~~~~~~~~ 65 (207)
T PLN02331 1 KLAVFVSGGGSNFRA--IHDACLDGRVNGDVVVVVTNKPGCGGAEYA--------RE-----NGIPVLVYPKTKGEPDGL 65 (207)
T ss_pred CEEEEEeCCChhHHH--HHHHHHcCCCCeEEEEEEEeCCCChHHHHH--------HH-----hCCCEEEeccccCCCccc
Confidence 456667777887777 445555443332 4555555433321 111 11 235555554332100000
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 124 VTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 124 ~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.. -+....+.+.+||++++.|=.--+|.-
T Consensus 66 ~~---------~~~~~~l~~~~~Dliv~agy~~il~~~ 94 (207)
T PLN02331 66 SP---------DELVDALRGAGVDFVLLAGYLKLIPVE 94 (207)
T ss_pred ch---------HHHHHHHHhcCCCEEEEeCcchhCCHH
Confidence 00 022345778899999998866555554
No 101
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=77.93 E-value=24 Score=30.51 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=18.6
Q ss_pred ChhhHHHHHHHHHHhhhcCCC
Q 027253 53 SGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~ 73 (226)
.||.-.-+..+++.|.+.+++
T Consensus 13 ~gG~~~~~~~l~~~L~~~g~~ 33 (357)
T cd03795 13 RGGIEQVIRDLAEGLAARGIE 33 (357)
T ss_pred CCcHHHHHHHHHHHHHhCCCc
Confidence 689999999999999988876
No 102
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=76.48 E-value=13 Score=34.48 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEec-CCCcchhHHHHHHHHHHcCCccceEEE-EccCCccCCcchhhhhhcccCCc
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLCN-GPGTCIPLCVIAFLFKVIGIRWSSIFY-VESIARVKRLSLSGLLLYKLCIA 202 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~t-Gg~vsvP~~lAa~lakllgi~~~~iv~-~Esnarv~~~sltgKll~~~~~a 202 (226)
..+..+.+...+..+.+.+++||+||.- =|+..+++. ..+|-.|++. |++| +=.-.=.-.++++-++ .+.+
T Consensus 62 ~~l~~~~~~~~~~~~~~~~~~pd~vIlID~pgFNlrla---k~lk~~~~~~-~viyYI~PqvWAWr~~R~~~i---~~~~ 134 (373)
T PF02684_consen 62 KKLPKLKRLFRKLVERIKEEKPDVVILIDYPGFNLRLA---KKLKKRGIPI-KVIYYISPQVWAWRPGRAKKI---KKYV 134 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCccHHHH---HHHHHhCCCc-eEEEEECCceeeeCccHHHHH---HHHH
Confidence 3444555556666677788999998875 455566655 3356677621 2444 3321111247776666 4689
Q ss_pred cEEEeechhhhhhCC----CceEEec
Q 027253 203 DQFFVQWPQLQRKYP----RAHYVGC 224 (226)
Q Consensus 203 d~~~vq~e~~~~~~p----~a~y~G~ 224 (226)
|.+++=+|--.++|. ++.|+|.
T Consensus 135 D~ll~ifPFE~~~y~~~g~~~~~VGH 160 (373)
T PF02684_consen 135 DHLLVIFPFEPEFYKKHGVPVTYVGH 160 (373)
T ss_pred hheeECCcccHHHHhccCCCeEEECC
Confidence 999998887777774 4789985
No 103
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=75.82 E-value=7.5 Score=35.41 Aligned_cols=82 Identities=17% Similarity=0.106 Sum_probs=48.9
Q ss_pred HHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccC-----CcchhhhhhcccCCccEEEeechhh
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVK-----RLSLSGLLLYKLCIADQFFVQWPQL 212 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~-----~~sltgKll~~~~~ad~~~vq~e~~ 212 (226)
-.++.+++||+|+.-|=-.+...+ |..|..++| |++.+|.=-|.. .|--.+|.+= .++||.-|+.=|..
T Consensus 60 ~~~~~~~~Pd~Vlv~GD~~~~la~--alaA~~~~i---pv~HieaGlRs~d~~~g~~de~~R~~i-~~la~lhf~~t~~~ 133 (346)
T PF02350_consen 60 ADVLEREKPDAVLVLGDRNEALAA--ALAAFYLNI---PVAHIEAGLRSGDRTEGMPDEINRHAI-DKLAHLHFAPTEEA 133 (346)
T ss_dssp HHHHHHHT-SEEEEETTSHHHHHH--HHHHHHTT----EEEEES-----S-TTSSTTHHHHHHHH-HHH-SEEEESSHHH
T ss_pred HHHHHhcCCCEEEEEcCCchHHHH--HHHHHHhCC---CEEEecCCCCccccCCCCchhhhhhhh-hhhhhhhccCCHHH
Confidence 356778899999999987665432 344789999 999999873322 3444565543 67899999888876
Q ss_pred hhhC-----C--CceEEecc
Q 027253 213 QRKY-----P--RAHYVGCL 225 (226)
Q Consensus 213 ~~~~-----p--~a~y~G~l 225 (226)
+++. + +..++|+.
T Consensus 134 ~~~L~~~G~~~~rI~~vG~~ 153 (346)
T PF02350_consen 134 RERLLQEGEPPERIFVVGNP 153 (346)
T ss_dssp HHHHHHTT--GGGEEE---H
T ss_pred HHHHHhcCCCCCeEEEEChH
Confidence 5542 1 45577764
No 104
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=75.79 E-value=37 Score=32.33 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=26.2
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhh-cCCCCeEEEE
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQM-DRFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~-~~~~~~~~~~ 79 (226)
.|++++ .=.-||+.||+.+++.|.. ++.. .++++
T Consensus 4 ~hvv~~P~p~qGHi~P~l~La~~La~~~G~~-vT~v~ 39 (455)
T PLN02152 4 PHFLLVTFPAQGHVNPSLRFARRLIKTTGTR-VTFAT 39 (455)
T ss_pred cEEEEecCcccccHHHHHHHHHHHhhCCCcE-EEEEe
Confidence 488888 6778999999999999974 4654 44443
No 105
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=75.75 E-value=11 Score=34.91 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=24.4
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++....+++++|+||+-|||.++=.+
T Consensus 94 ~v~~~~~~~r~~~~D~IiavGGGS~iD~A 122 (395)
T PRK15454 94 DVCAAVAQLRESGCDGVIAFGGGSVLDAA 122 (395)
T ss_pred HHHHHHHHHHhcCcCEEEEeCChHHHHHH
Confidence 35567788899999999999999888666
No 106
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=75.75 E-value=27 Score=29.48 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=22.6
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
|+++|+||+|| -+.++++.|.+++++ +++++.
T Consensus 1 m~vlItGas~g---IG~aia~~l~~~G~~--V~~~~r 32 (259)
T PRK08340 1 MNVLVTASSRG---IGFNVARELLKKGAR--VVISSR 32 (259)
T ss_pred CeEEEEcCCcH---HHHHHHHHHHHcCCE--EEEEeC
Confidence 68899998887 456677788777754 555443
No 107
>PLN02167 UDP-glycosyltransferase family protein
Probab=75.71 E-value=75 Score=30.22 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=23.9
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCC
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRF 72 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~ 72 (226)
+-||+++ .-.=||+.||+.+|+.|..++.
T Consensus 3 ~~hVv~~PfpaqGHi~P~l~LAk~La~~G~ 32 (475)
T PLN02167 3 EAELIFVPFPSTGHILVTIEFAKRLINLDR 32 (475)
T ss_pred ccEEEEeCChhhhhHHHHHHHHHHHHhCCC
Confidence 3588888 6666999999999999987663
No 108
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=75.44 E-value=47 Score=27.78 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=77.4
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHH
Q 027253 53 SGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLL 132 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~ 132 (226)
-||=-.-+-.|++.+.+++++ +.+...++..+.+ +. ...+.+...+|.++.. ...++.--+.
T Consensus 16 YGGfET~ve~L~~~l~~~g~~--v~Vyc~~~~~~~~-----~~--------~y~gv~l~~i~~~~~g---~~~si~yd~~ 77 (185)
T PF09314_consen 16 YGGFETFVEELAPRLVSKGID--VTVYCRSDYYPYK-----EF--------EYNGVRLVYIPAPKNG---SAESIIYDFL 77 (185)
T ss_pred cCcHHHHHHHHHHHHhcCCce--EEEEEccCCCCCC-----Cc--------ccCCeEEEEeCCCCCC---chHHHHHHHH
Confidence 478777788888888877765 3333333333211 10 0135677777765432 2445556667
Q ss_pred HHHHHHHhhHhc--CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEE-c--cCCccCCcch--------hhhhhccc
Q 027253 133 ATTHALWLMVKI--RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYV-E--SIARVKRLSL--------SGLLLYKL 199 (226)
Q Consensus 133 ~~~~a~~il~k~--kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~-E--snarv~~~sl--------tgKll~~~ 199 (226)
++..|++..++. +.|++..-|-.++-.+. .+.++++-.+.|+++- + .|-| ..-|. +=++. .
T Consensus 78 sl~~al~~~~~~~~~~~ii~ilg~~~g~~~~---~~~r~~~~~g~~v~vN~DGlEWkR-~KW~~~~k~~lk~~E~~a--v 151 (185)
T PF09314_consen 78 SLLHALRFIKQDKIKYDIILILGYGIGPFFL---PFLRKLRKKGGKVVVNMDGLEWKR-AKWGRPAKKYLKFSEKLA--V 151 (185)
T ss_pred HHHHHHHHHhhccccCCEEEEEcCCccHHHH---HHHHhhhhcCCcEEECCCcchhhh-hhcCHHHHHHHHHHHHHH--H
Confidence 888888776654 67887777765332111 2334442111145442 1 1222 11222 23455 5
Q ss_pred CCccEEEeechhhhhhC
Q 027253 200 CIADQFFVQWPQLQRKY 216 (226)
Q Consensus 200 ~~ad~~~vq~e~~~~~~ 216 (226)
++||.++.-.++.++++
T Consensus 152 k~ad~lIaDs~~I~~y~ 168 (185)
T PF09314_consen 152 KYADRLIADSKGIQDYI 168 (185)
T ss_pred HhCCEEEEcCHHHHHHH
Confidence 78999999998877654
No 109
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=75.07 E-value=15 Score=34.37 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=23.9
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.++....++.++|+||+-|||..+=.+
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGSviD~A 96 (414)
T cd08190 68 SFKDAIAFAKKGQFDAFVAVGGGSVIDTA 96 (414)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHH
Confidence 45567778889999999999999887554
No 110
>PLN02735 carbamoyl-phosphate synthase
Probab=74.74 E-value=21 Score=37.75 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=20.8
Q ss_pred CeEEEEEecCh---hhHHH----HHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSG---GHTAE----MMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtG---GH~~p----~lal~~~l~~~~~~ 73 (226)
..|||+.||.+ |+-.| +.+++++|++.+++
T Consensus 23 ~kkVLiiGsG~~~igqa~e~d~SG~q~~kaLke~G~~ 59 (1102)
T PLN02735 23 LKKIMILGAGPIVIGQACEFDYSGTQACKALKEEGYE 59 (1102)
T ss_pred CCEEEEECCCccccccceeecchHHHHHHHHHHcCCE
Confidence 46777775544 44433 77889999988876
No 111
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=74.37 E-value=13 Score=30.22 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=37.4
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHH
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKAR 91 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~ 91 (226)
.++.++++.+|+|..=.-++.+|..|..+++...++++...+..+.....
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~ 72 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQ 72 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHH
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEEEEEEeccccCCHHHHH
Confidence 44578999999999999999999999888888666666666666554443
No 112
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=74.23 E-value=8.9 Score=33.72 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=20.7
Q ss_pred HhhHhcCCcEEEecCCCcchhHH-----------------HHHHHHHHcCCccceEEEEccCCc
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLC-----------------VIAFLFKVIGIRWSSIFYVESIAR 185 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~-----------------lAa~lakllgi~~~~iv~~Esnar 185 (226)
.++.+.+||+||=+.+++.+-.| +| -+++-.|+ +++++=|...
T Consensus 45 ~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la-~~~~~~~~---~li~~STd~V 104 (286)
T PF04321_consen 45 KLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLA-EACKERGA---RLIHISTDYV 104 (286)
T ss_dssp HHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHH-HHHHHCT----EEEEEEEGGG
T ss_pred HHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHH-HHHHHcCC---cEEEeeccEE
Confidence 34566789999999988754321 11 22334565 8888888764
No 113
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=73.74 E-value=36 Score=31.75 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=25.8
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVI 163 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lA 163 (226)
.+.++...+++++||.||+.|||.++=.+=+
T Consensus 74 ~v~~~~~~~~~~~~D~iIalGGGS~~D~AK~ 104 (377)
T COG1454 74 TVEAGAEVAREFGPDTIIALGGGSVIDAAKA 104 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHHHH
Confidence 4557788899999999999999988766644
No 114
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=73.26 E-value=18 Score=33.20 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++...+++.++|+||+-|||.++=.+
T Consensus 71 ~v~~~~~~~~~~~~d~IIaiGGGS~~D~a 99 (374)
T cd08189 71 NVEAGLALYRENGCDAILAVGGGSVIDCA 99 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHH
Confidence 34466677888999999999999887665
No 115
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=72.85 E-value=30 Score=31.28 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=29.0
Q ss_pred HHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 136 HALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+....+++ ++|+||+-|||.++=++=++ +-+.++ |++.+=+-
T Consensus 72 ~~~~~~~~-~~d~IIaIGGGs~~D~aK~v--A~~~~~---p~i~IPTT 113 (348)
T cd08175 72 RVLKELER-DTDLIIAVGSGTINDITKYV--SYKTGI---PYISVPTA 113 (348)
T ss_pred HHHHHhhc-cCCEEEEECCcHHHHHHHHH--HHhcCC---CEEEecCc
Confidence 34444555 89999999999887665332 445566 88777654
No 116
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=72.57 E-value=16 Score=33.57 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=23.7
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.++....+++++|+||+-|||..+=.+
T Consensus 74 ~v~~~~~~~~~~~~D~IiaiGGGSviD~a 102 (379)
T TIGR02638 74 VVKAGVAAFKASGADYLIAIGGGSPIDTA 102 (379)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHH
Confidence 44567778888999999999999887555
No 117
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=72.30 E-value=35 Score=28.55 Aligned_cols=32 Identities=6% Similarity=0.032 Sum_probs=22.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
|+++|+|||||- +.++++.|.+++++ +.+++.
T Consensus 1 ~~vlItGasg~i---G~~la~~l~~~G~~--V~~~~r 32 (248)
T PRK10538 1 MIVLVTGATAGF---GECITRRFIQQGHK--VIATGR 32 (248)
T ss_pred CEEEEECCCchH---HHHHHHHHHHCCCE--EEEEEC
Confidence 678888999865 55677777777654 455443
No 118
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=71.94 E-value=15 Score=33.74 Aligned_cols=72 Identities=22% Similarity=0.178 Sum_probs=46.1
Q ss_pred cCCcEEEe-cCCCcchhHHHHHHHHHHc--CCccceEEEEccCCc-cCCcchhhhhhcccCCccEEEeechhhhhhCC-C
Q 027253 144 IRPQVVLC-NGPGTCIPLCVIAFLFKVI--GIRWSSIFYVESIAR-VKRLSLSGLLLYKLCIADQFFVQWPQLQRKYP-R 218 (226)
Q Consensus 144 ~kPdvVi~-tGg~vsvP~~lAa~lakll--gi~~~~iv~~Esnar-v~~~sltgKll~~~~~ad~~~vq~e~~~~~~p-~ 218 (226)
++||++|+ ==|+..+.+. ..+|-. |+ |++|.=+-.. .=.+|++.++ ++++|.+++-||--.+.|+ +
T Consensus 75 ~~pd~~i~iD~p~Fnl~la---k~~k~~~~~i---~viyyi~PqvWAWr~~R~~~i---~k~~d~vl~ifPFE~~~yg~~ 145 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLA---KKIKKAYPKK---EIIYYILPQVWAWKKGRAKIL---EKYCDFLASILPFEVQFYQSK 145 (347)
T ss_pred cCCCEEEEeCCCCCCHHHH---HHHHhcCCCC---CEEEEECccceeeCcchHHHH---HHHHhhhhccCCCCHHHhCCC
Confidence 79999987 3455555544 234555 56 7777654210 0136776666 5799999998874455663 5
Q ss_pred ceEEec
Q 027253 219 AHYVGC 224 (226)
Q Consensus 219 a~y~G~ 224 (226)
++|+|+
T Consensus 146 ~~~VGh 151 (347)
T PRK14089 146 ATYVGH 151 (347)
T ss_pred CEEECC
Confidence 889986
No 119
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=71.85 E-value=32 Score=31.06 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=32.8
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
.+-++...+++.++|+||+-|||..+=.+=++ +-+.++ |++.+=+-
T Consensus 65 ~v~~~~~~~~~~~~d~IIaiGGGs~iD~aK~i--a~~~~~---p~i~IPTt 110 (337)
T cd08177 65 VTEAAVAAAREAGADGIVAIGGGSTIDLAKAI--ALRTGL---PIIAIPTT 110 (337)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHH--HHHhcC---CEEEEcCC
Confidence 45566677788999999999999888666432 333466 87777544
No 120
>PLN03004 UDP-glycosyltransferase
Probab=71.80 E-value=42 Score=31.87 Aligned_cols=27 Identities=15% Similarity=0.163 Sum_probs=21.1
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~ 71 (226)
-|++++ .=.=||+.||+.+++.|..++
T Consensus 4 ~Hvvl~P~p~qGHi~P~l~LA~~La~~g 31 (451)
T PLN03004 4 EAIVLYPAPPIGHLVSMVELGKTILSKN 31 (451)
T ss_pred cEEEEeCCcccchHHHHHHHHHHHHhCC
Confidence 577777 323499999999999998765
No 121
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=71.70 E-value=19 Score=32.91 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=23.9
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.++....++.++|+||+-|||.++=++
T Consensus 69 ~v~~~~~~~~~~~~d~IIaiGGGSviD~a 97 (370)
T cd08192 69 AVEAGLAAYRAGGCDGVIAFGGGSALDLA 97 (370)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 45566777888999999999999888665
No 122
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=71.19 E-value=21 Score=32.73 Aligned_cols=30 Identities=17% Similarity=0.145 Sum_probs=24.1
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCV 162 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~l 162 (226)
.+-++...+++.++|+||+-|||.++=.+=
T Consensus 68 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~AK 97 (375)
T cd08194 68 SVEEGVKLAKEGGCDVIIALGGGSPIDTAK 97 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHH
Confidence 445667778889999999999998876653
No 123
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=71.10 E-value=19 Score=32.97 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=24.1
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCV 162 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~l 162 (226)
.+-++...+++.++|+||+-|||.++=.+=
T Consensus 71 ~v~~~~~~~~~~~~D~IIaiGGGs~iD~aK 100 (376)
T cd08193 71 VVEAAVEAARAAGADGVIGFGGGSSMDVAK 100 (376)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHHH
Confidence 445667778889999999999998886663
No 124
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=69.81 E-value=22 Score=32.81 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=24.8
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVI 163 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lA 163 (226)
.+-++..+.+++++|+||+-|||.++=.+=+
T Consensus 76 ~v~~~~~~~~~~~~D~IiaiGGGS~iD~AK~ 106 (383)
T PRK09860 76 NVAAGLKLLKENNCDSVISLGGGSPHDCAKG 106 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCchHHHHHHH
Confidence 3456677888999999999999988766633
No 125
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.59 E-value=43 Score=25.07 Aligned_cols=34 Identities=18% Similarity=0.228 Sum_probs=25.9
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
|+++. .+.=.|...+..++..|+..+|+ +...+.
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~--V~~lg~ 35 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFE--VIDLGV 35 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCE--EEECCC
Confidence 35555 78889999999999999988886 444453
No 126
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=69.40 E-value=21 Score=33.23 Aligned_cols=36 Identities=22% Similarity=0.257 Sum_probs=25.2
Q ss_pred eEEEEE---ecChhhHHHHHHHHHHhhhc--CCCCeEEEEEc
Q 027253 45 LSTLIV---LGSGGHTAEMMNLLSVLQMD--RFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv---~GtGGH~~p~lal~~~l~~~--~~~~~~~~~~~ 81 (226)
+||++= .-.=||+.-+.+||+.|.++ +++ ..++.|.
T Consensus 10 ~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~-Il~IsG~ 50 (400)
T COG4671 10 PRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD-ILIISGG 50 (400)
T ss_pred ceEEEEehhhccchHHHHHHHHHHHHhhcccCce-EEEEeCC
Confidence 477654 34458999999999999887 554 4444443
No 127
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=69.08 E-value=85 Score=27.99 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=19.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
|||.|+|+ ||....++.+ +...+....+.++..
T Consensus 1 mkI~IIGa--G~VG~~~a~~--l~~~g~~~ev~l~D~ 33 (308)
T cd05292 1 MKVAIVGA--GFVGSTTAYA--LLLRGLASEIVLVDI 33 (308)
T ss_pred CEEEEECC--CHHHHHHHHH--HHHcCCCCEEEEEEC
Confidence 68888875 6777666653 333443235565544
No 128
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=68.91 E-value=31 Score=31.32 Aligned_cols=31 Identities=13% Similarity=0.136 Sum_probs=25.2
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVI 163 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lA 163 (226)
.+..+...++++++|+||+.||+.++=.+=+
T Consensus 66 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~aK~ 96 (366)
T PF00465_consen 66 DVDEAAEQARKFGADCIIAIGGGSVMDAAKA 96 (366)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCcCcHHHH
Confidence 4456677888999999999999988766644
No 129
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=68.46 E-value=10 Score=27.50 Aligned_cols=35 Identities=23% Similarity=0.225 Sum_probs=23.7
Q ss_pred EEEecChhhHHHHHHHHHHhhhcC-CCCeEEEEEcCCc
Q 027253 48 LIVLGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAATDN 84 (226)
Q Consensus 48 liv~GtGGH~~p~lal~~~l~~~~-~~~~~~~~~~~d~ 84 (226)
+|+|||| +.|++++++.+.+++ .....++.+..+.
T Consensus 1 lIagGtG--IaP~~s~l~~~~~~~~~~~v~l~~~~r~~ 36 (109)
T PF00175_consen 1 LIAGGTG--IAPFLSMLRYLLERNDNRKVTLFYGARTP 36 (109)
T ss_dssp EEEEGGG--GHHHHHHHHHHHHHTCTSEEEEEEEESSG
T ss_pred Ceeccee--HHHHHHHHHHHHHhCCCCCEEEEEEEccc
Confidence 5679999 999999999987533 2334455554433
No 130
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=68.04 E-value=24 Score=32.48 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=23.6
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++...+++.++|+||+-|||.++=.+
T Consensus 75 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~a 103 (382)
T PRK10624 75 VVKEGVEVFKASGADYLIAIGGGSPQDTC 103 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEeCChHHHHHH
Confidence 34566677888999999999999887665
No 131
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=67.67 E-value=20 Score=32.83 Aligned_cols=29 Identities=14% Similarity=0.111 Sum_probs=22.9
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++....+++++|+||+-|||.++=.+
T Consensus 73 ~v~~~~~~~~~~~~D~IIavGGGS~iD~a 101 (377)
T cd08176 73 NVKDGLAVFKKEGCDFIISIGGGSPHDCA 101 (377)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHH
Confidence 34456677888999999999999886555
No 132
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=67.64 E-value=46 Score=29.60 Aligned_cols=32 Identities=16% Similarity=-0.115 Sum_probs=21.2
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
.++++|+|||| +-+.++++.|.+++++ +..+.
T Consensus 4 ~k~ilItGatG---~IG~~l~~~L~~~G~~--V~~~~ 35 (349)
T TIGR02622 4 GKKVLVTGHTG---FKGSWLSLWLLELGAE--VYGYS 35 (349)
T ss_pred CCEEEEECCCC---hhHHHHHHHHHHCCCE--EEEEe
Confidence 47888889888 3445666777666654 44444
No 133
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=67.53 E-value=31 Score=31.69 Aligned_cols=30 Identities=13% Similarity=0.063 Sum_probs=24.2
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCV 162 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~l 162 (226)
.+.++....++++||+||+-|||.++=.+=
T Consensus 71 ~v~~~~~~~~~~~~D~IiavGGGS~iD~aK 100 (380)
T cd08185 71 TVMEGAALAREEGCDFVVGLGGGSSMDTAK 100 (380)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHHH
Confidence 445666778889999999999998876663
No 134
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=67.23 E-value=1.4e+02 Score=29.63 Aligned_cols=46 Identities=9% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEc
Q 027253 130 TLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVE 181 (226)
Q Consensus 130 ~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~E 181 (226)
+.-++..-..+++++|||+|-+-..+.++-..+| |++.|+ |+++++
T Consensus 265 ~~~~~~~l~~~ir~~rpDIVHt~~~~a~l~g~la---A~lagv---pviv~~ 310 (578)
T PRK15490 265 CKYGIKHLVPHLCERKLDYLSVWQDGACLMIALA---ALIAGV---PRIQLG 310 (578)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCcccHHHHHHH---HHhcCC---CEEEEe
Confidence 3446667778899999999999998866555544 566787 888775
No 135
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=67.02 E-value=71 Score=29.41 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=21.8
Q ss_pred HHHHhhHhcCCcEEEecCCCcchhHHHH
Q 027253 136 HALWLMVKIRPQVVLCNGPGTCIPLCVI 163 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vsvP~~lA 163 (226)
......++.++|+||+-|||.++=.+=+
T Consensus 70 ~~~~~~~~~~~D~IIaiGGGS~iD~aK~ 97 (386)
T cd08191 70 DAASAAARAGPDVIIGLGGGSCIDLAKI 97 (386)
T ss_pred HHHHHHHhcCCCEEEEeCCchHHHHHHH
Confidence 4456677799999999999988766533
No 136
>PRK12744 short chain dehydrogenase; Provisional
Probab=66.96 E-value=76 Score=26.61 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=19.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.+++|+||+|| -+.++++.|.+++++
T Consensus 9 k~vlItGa~~g---IG~~~a~~l~~~G~~ 34 (257)
T PRK12744 9 KVVLIAGGAKN---LGGLIARDLAAQGAK 34 (257)
T ss_pred cEEEEECCCch---HHHHHHHHHHHCCCc
Confidence 57888899887 567788888777754
No 137
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=66.25 E-value=9.7 Score=36.11 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=28.7
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
+..||+++ .=.=||+.||+.+++.|..+++. .+++++
T Consensus 6 ~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~-VT~v~T 43 (451)
T PLN02410 6 ARRRVVLVPVPAQGHISPMMQLAKTLHLKGFS-ITIAQT 43 (451)
T ss_pred CCCEEEEECCCccccHHHHHHHHHHHHcCCCE-EEEEeC
Confidence 55799999 66669999999999999877765 444433
No 138
>PLN02555 limonoid glucosyltransferase
Probab=66.03 E-value=10 Score=36.32 Aligned_cols=36 Identities=14% Similarity=0.326 Sum_probs=29.3
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
+.||+++ .-.-||+.||+.+++.|..++.. .+++++
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~-vT~v~T 43 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASKGLL-VTFVTT 43 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhCCCe-EEEEec
Confidence 4689999 88899999999999999877765 555543
No 139
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.72 E-value=70 Score=26.11 Aligned_cols=26 Identities=12% Similarity=-0.061 Sum_probs=18.4
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
++++|+||||| =+.++++.|.+++++
T Consensus 7 ~~vlItGasg~---iG~~l~~~l~~~g~~ 32 (249)
T PRK12825 7 RVALVTGAARG---LGRAIALRLARAGAD 32 (249)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHCCCe
Confidence 57888888877 445566677676764
No 140
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=65.70 E-value=1e+02 Score=27.67 Aligned_cols=104 Identities=9% Similarity=0.065 Sum_probs=55.0
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcce-EEEEeecCcccc
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSA-QFMQIYRSREVG 120 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~-~~~~i~r~r~~~ 120 (226)
.++||||+ .+.=|=+--+..+.+.|++.-.+.++.++...... ..+ +. .. .+ .++.+++.+..
T Consensus 4 ~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~--~l~---~~----~P-----~id~vi~~~~~~~~- 68 (352)
T PRK10422 4 PFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI--PIL---SE----NP-----EINALYGIKNKKAG- 68 (352)
T ss_pred CCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH--HHh---cc----CC-----CceEEEEecccccc-
Confidence 46899999 77777666666666667665445566666544322 111 11 00 12 23334443211
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCC
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGI 172 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi 172 (226)
.. +-+...+.-.+.+++.++|++|..-+.. . .++++++.|.
T Consensus 69 --~~----~~~~~~~~l~~~lr~~~yD~vidl~~~~--~---s~ll~~l~~a 109 (352)
T PRK10422 69 --AS----EKIKNFFSLIKVLRANKYDLIVNLTDQW--M---VALLVRLLNA 109 (352)
T ss_pred --HH----HHHHHHHHHHHHHhhCCCCEEEEcccch--H---HHHHHHHhCC
Confidence 00 1122344445678889999999875432 1 2244555564
No 141
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=65.59 E-value=15 Score=33.22 Aligned_cols=46 Identities=20% Similarity=0.210 Sum_probs=32.4
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
.+-+....+++.++|+||+-|||.++=++=++ +.+.++ |++.+=+-
T Consensus 66 ~v~~~~~~~~~~~~d~iIaiGGGs~~D~aK~~--a~~~~~---p~i~iPTT 111 (339)
T cd08173 66 EVEKVESSARDIGADFVIGVGGGRVIDVAKVA--AYKLGI---PFISVPTA 111 (339)
T ss_pred HHHHHHHHhhhcCCCEEEEeCCchHHHHHHHH--HHhcCC---CEEEecCc
Confidence 34455566677899999999999988666432 455677 87777654
No 142
>PLN02780 ketoreductase/ oxidoreductase
Probab=65.06 E-value=44 Score=29.82 Aligned_cols=33 Identities=12% Similarity=0.027 Sum_probs=20.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
...++|+|||||= +.+++++|.+++++ +.+++.
T Consensus 53 g~~~lITGAs~GI---G~alA~~La~~G~~--Vil~~R 85 (320)
T PLN02780 53 GSWALVTGPTDGI---GKGFAFQLARKGLN--LVLVAR 85 (320)
T ss_pred CCEEEEeCCCcHH---HHHHHHHHHHCCCC--EEEEEC
Confidence 4567777888873 45566677666654 444443
No 143
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=64.97 E-value=33 Score=31.27 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++....++.++|+||+-|||.++=.+
T Consensus 71 ~v~~~~~~~~~~~~D~IIavGGGSviD~a 99 (357)
T cd08181 71 TIMEAVEIAKKFNADFVIGIGGGSPLDAA 99 (357)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 45566777888999999999999887665
No 144
>PLN00142 sucrose synthase
Probab=64.69 E-value=54 Score=33.72 Aligned_cols=29 Identities=17% Similarity=0.299 Sum_probs=20.1
Q ss_pred cCCcEEEecCCCcchhHHHHHHHHHHcCCccceEE
Q 027253 144 IRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIF 178 (226)
Q Consensus 144 ~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv 178 (226)
.+||+|.++-.-.. ..|..+++.+|+ |.+
T Consensus 407 ~~PDlIHaHYwdsg---~vA~~La~~lgV---P~v 435 (815)
T PLN00142 407 GKPDLIIGNYSDGN---LVASLLAHKLGV---TQC 435 (815)
T ss_pred CCCCEEEECCccHH---HHHHHHHHHhCC---CEE
Confidence 36999999955543 334456889998 554
No 145
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=64.44 E-value=15 Score=33.30 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=32.9
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
+-+.....++.++|+||+-|||.++=.+=++ +-+.++ |++-+=+-+
T Consensus 66 v~~~~~~~~~~~~D~IIavGGGS~iD~aK~i--a~~~~~---P~iaIPTTa 111 (351)
T cd08170 66 IERLAEIARDNGADVVIGIGGGKTLDTAKAV--ADYLGA---PVVIVPTIA 111 (351)
T ss_pred HHHHHHHHhhcCCCEEEEecCchhhHHHHHH--HHHcCC---CEEEeCCcc
Confidence 4466677788999999999999988766432 334566 777665543
No 146
>PRK08265 short chain dehydrogenase; Provisional
Probab=64.11 E-value=75 Score=26.87 Aligned_cols=32 Identities=13% Similarity=-0.015 Sum_probs=21.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||||| -+.++++.|.++++ .+.+++.
T Consensus 7 k~vlItGas~g---IG~~ia~~l~~~G~--~V~~~~r 38 (261)
T PRK08265 7 KVAIVTGGATL---IGAAVARALVAAGA--RVAIVDI 38 (261)
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCC--EEEEEeC
Confidence 56777788875 55667778877775 3555443
No 147
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=63.55 E-value=12 Score=32.87 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=21.2
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|||++.|||| ++..+++.|.+.+++
T Consensus 1 m~ILvlGGT~----egr~la~~L~~~g~~ 25 (256)
T TIGR00715 1 MTVLLMGGTV----DSRAIAKGLIAQGIE 25 (256)
T ss_pred CeEEEEechH----HHHHHHHHHHhCCCe
Confidence 6899999998 499999999877754
No 148
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=62.50 E-value=37 Score=31.14 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
+.++....++.++|+||+-|||.++=..
T Consensus 74 v~~~~~~~~~~~~d~IIaiGGGsviD~A 101 (377)
T cd08188 74 VMAGAELYLENGCDVIIAVGGGSPIDCA 101 (377)
T ss_pred HHHHHHHHHhcCCCEEEEeCCchHHHHH
Confidence 3455667788999999999999887665
No 149
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=62.25 E-value=1e+02 Score=26.93 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=29.6
Q ss_pred eEEEEEecChhhH-HHHHHHHHHhhhcCCCCeEEEEEcCCcch
Q 027253 45 LSTLIVLGSGGHT-AEMMNLLSVLQMDRFTPRFYIAAATDNMS 86 (226)
Q Consensus 45 ~kiliv~GtGGH~-~p~lal~~~l~~~~~~~~~~~~~~~d~~s 86 (226)
---.++|||=|++ ..+.++.+.++++---+.+++.++...++
T Consensus 42 TDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~~is 84 (240)
T COG1646 42 TDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPSGIS 84 (240)
T ss_pred CCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChhccC
Confidence 3457779999998 56788999988542225777777766654
No 150
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=61.73 E-value=43 Score=29.49 Aligned_cols=30 Identities=17% Similarity=0.186 Sum_probs=18.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
||||++|++++| ++++.|++.+...+++.+
T Consensus 2 ~~vLv~g~~~~~-----~~~~~l~~~~~g~~vi~~ 31 (326)
T PRK12767 2 MNILVTSAGRRV-----QLVKALKKSLLKGRVIGA 31 (326)
T ss_pred ceEEEecCCccH-----HHHHHHHHhccCCEEEEE
Confidence 789999877776 456666655322234443
No 151
>PF12500 TRSP: TRSP domain C terminus to PRTase_2 ; InterPro: IPR022537 This domain is found in bacteria, and is typically between 174 and 217 amino acids in length. There is a conserved TRSP sequence motif.
Probab=61.54 E-value=15 Score=29.91 Aligned_cols=37 Identities=19% Similarity=0.174 Sum_probs=29.5
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
=.+|.|||=+.++.+.||++|.+++. .+.+-+++.+-
T Consensus 59 ~vLVLGTgEfMy~Pl~lA~~Le~~g~--~V~~qSTTRSP 95 (155)
T PF12500_consen 59 RVLVLGTGEFMYLPLLLAEELEQAGA--DVRYQSTTRSP 95 (155)
T ss_pred cEEEEccchHHHHHHHHHHHHHhcCC--ceEEeCCCCCC
Confidence 35778999999999999999988774 46776666543
No 152
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=61.49 E-value=71 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=22.9
Q ss_pred EEEEE---ecChhhHHHHHHHHHHhhhcCCCCeEE
Q 027253 46 STLIV---LGSGGHTAEMMNLLSVLQMDRFTPRFY 77 (226)
Q Consensus 46 kiliv---~GtGGH~~p~lal~~~l~~~~~~~~~~ 77 (226)
||+++ ...||=..-..++++.|++.+++..++
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~ 35 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWE 35 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEE
Confidence 35555 256888888889999999888773333
No 153
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=61.29 E-value=1.3e+02 Score=30.92 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=21.0
Q ss_pred cCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEE
Q 027253 144 IRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFY 179 (226)
Q Consensus 144 ~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~ 179 (226)
.+||+|.++-.-.. ..|..+++.+|+ |.+.
T Consensus 384 ~~pDlIHahy~d~g---lva~lla~~lgV---P~v~ 413 (784)
T TIGR02470 384 GKPDLIIGNYSDGN---LVASLLARKLGV---TQCT 413 (784)
T ss_pred CCCCEEEECCCchH---HHHHHHHHhcCC---CEEE
Confidence 47999999875543 334456889998 7554
No 154
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=60.22 E-value=27 Score=29.76 Aligned_cols=44 Identities=9% Similarity=0.208 Sum_probs=36.3
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchh
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSL 87 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~ 87 (226)
.-|+++++|+|+-=.-++-.|..|...++...++..+.......
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~~~~~~~~~ 92 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYAVTVLLLGDPKKLKT 92 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCceEEEEeCCCCCccH
Confidence 57899999999999999999999998888767777776655433
No 155
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=60.16 E-value=51 Score=30.17 Aligned_cols=29 Identities=21% Similarity=0.122 Sum_probs=24.1
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.++....++.++|+||+-|||.++=.+
T Consensus 63 ~v~~~~~~~~~~~~D~IIaiGGGS~~D~a 91 (374)
T cd08183 63 LVDAAVAEARNAGCDVVIAIGGGSVIDAG 91 (374)
T ss_pred HHHHHHHHHHhcCCCEEEEecCchHHHHH
Confidence 45567778888999999999999887665
No 156
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=60.06 E-value=48 Score=30.21 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=23.5
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++...++++++|+||+-|||.++=.+
T Consensus 65 ~v~~~~~~~~~~~~D~IIavGGGs~~D~a 93 (367)
T cd08182 65 DLAAGIRLLREFGPDAVLAVGGGSVLDTA 93 (367)
T ss_pred HHHHHHHHHHhcCcCEEEEeCCcHHHHHH
Confidence 44466677888999999999999887665
No 157
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=59.98 E-value=44 Score=30.73 Aligned_cols=29 Identities=24% Similarity=0.189 Sum_probs=23.5
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.+....++++++|+||+-|||.++=.+
T Consensus 72 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~a 100 (383)
T cd08186 72 QVDEAAKLGREFGAQAVIAIGGGSPIDSA 100 (383)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccHHHHH
Confidence 44566677888999999999999887655
No 158
>PLN02173 UDP-glucosyl transferase family protein
Probab=59.24 E-value=16 Score=34.78 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=28.3
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
++.|++++ -=.-||+.||+.+|+.|..++.. +.++.+.
T Consensus 4 ~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~--vT~v~t~ 42 (449)
T PLN02173 4 MRGHVLAVPFPSQGHITPIRQFCKRLHSKGFK--TTHTLTT 42 (449)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHHcCCCE--EEEEECC
Confidence 34689888 55569999999999999877754 4444444
No 159
>PRK06196 oxidoreductase; Provisional
Probab=58.55 E-value=83 Score=27.56 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=21.1
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||||| -+.++++.|.++++. +.+++.
T Consensus 26 ~k~vlITGasgg---IG~~~a~~L~~~G~~--Vv~~~R 58 (315)
T PRK06196 26 GKTAIVTGGYSG---LGLETTRALAQAGAH--VIVPAR 58 (315)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCE--EEEEeC
Confidence 356777788876 355666777776653 555444
No 160
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=58.37 E-value=25 Score=24.83 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=21.3
Q ss_pred EEEEEecCh-hhHHHH-HHHHHHhhhcCCC
Q 027253 46 STLIVLGSG-GHTAEM-MNLLSVLQMDRFT 73 (226)
Q Consensus 46 kiliv~GtG-GH~~p~-lal~~~l~~~~~~ 73 (226)
|+++++|+| |+..-+ .++-+.+++++.+
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 689999999 666555 6777778887765
No 161
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=58.19 E-value=24 Score=31.97 Aligned_cols=46 Identities=11% Similarity=0.160 Sum_probs=33.4
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
.+-+.....++.++|+||+-|||.+.=.+=++ +...++ |++.+=+-
T Consensus 64 ~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~i--a~~~~~---p~i~VPTT 109 (347)
T cd08172 64 NIERLAAQAKENGADVIIGIGGGKVLDTAKAV--ADRLGV---PVITVPTL 109 (347)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHH--HHHhCC---CEEEecCc
Confidence 44566677888899999999999887665432 445576 77776654
No 162
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=57.82 E-value=1e+02 Score=25.11 Aligned_cols=33 Identities=18% Similarity=0.029 Sum_probs=21.6
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||||| -+.++++.|.+++++ +++++.
T Consensus 5 ~~~vlItG~sg~---iG~~l~~~l~~~G~~--v~~~~~ 37 (248)
T PRK05557 5 GKVALVTGASRG---IGRAIAERLAAQGAN--VVINYA 37 (248)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCCE--EEEEeC
Confidence 357888888875 456677777766654 444444
No 163
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=57.68 E-value=24 Score=31.97 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=32.3
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
+-+.....++.++|+||+-|||.++=.+=++ +-++++ |++.+=+-+
T Consensus 67 v~~~~~~~~~~~~d~iiavGGGs~~D~aK~i--a~~~~~---p~i~VPTt~ 112 (345)
T cd08171 67 VERLKKNPAVQEADMIFAVGGGKAIDTVKVL--ADKLGK---PVFTFPTIA 112 (345)
T ss_pred HHHHHHHHhhcCCCEEEEeCCcHHHHHHHHH--HHHcCC---CEEEecCcc
Confidence 3455567778899999999999887665332 444576 777776543
No 164
>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD
Probab=57.48 E-value=30 Score=29.61 Aligned_cols=33 Identities=18% Similarity=0.156 Sum_probs=23.1
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
++|+|||| +.|++++++++...+..+..++.|.
T Consensus 113 vlIAgGtG--IaP~~s~l~~~~~~~~~~~~l~~g~ 145 (245)
T cd06200 113 ILIGNGTG--LAGLRSHLRARARAGRHRNWLLFGE 145 (245)
T ss_pred EEEecCcC--hHHHHHHHHHHHhccCCCeEEEEec
Confidence 55559999 9999999998865443334455554
No 165
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=57.18 E-value=60 Score=34.24 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=17.3
Q ss_pred HHhhHhcCCcEEEec-CCCcchhHH
Q 027253 138 LWLMVKIRPQVVLCN-GPGTCIPLC 161 (226)
Q Consensus 138 ~~il~k~kPdvVi~t-Gg~vsvP~~ 161 (226)
..++++++||+|+.+ |+-+.+...
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~~ 99 (1066)
T PRK05294 75 EKIIEKERPDAILPTMGGQTALNLA 99 (1066)
T ss_pred HHHHHHHCcCEEEECCCCchhhhhh
Confidence 345678999999975 776665544
No 166
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=57.18 E-value=14 Score=33.38 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=27.2
Q ss_pred eEEEEE--ec---ChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLIV--LG---SGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv--~G---tGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
|||+|. || .+||+.-++.||++|++.++. .+|+ +++|
T Consensus 1 M~V~i~~Dgg~~iGmGHV~R~l~LA~~l~k~~~~-~~fl-~k~~ 42 (318)
T COG3980 1 MKVLIRCDGGLEIGMGHVMRTLTLARELEKRGFA-CLFL-TKQD 42 (318)
T ss_pred CcEEEEecCCcccCcchhhhHHHHHHHHHhcCce-EEEe-cccc
Confidence 678777 43 479999999999999987743 4444 4444
No 167
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=56.92 E-value=26 Score=31.78 Aligned_cols=46 Identities=17% Similarity=0.178 Sum_probs=33.4
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
.+-+.....++.++|+||+-|||.++=.+=++ +.+.++ |++.+=+-
T Consensus 65 ~v~~~~~~~~~~~~d~IIavGGGs~~D~aK~i--a~~~~~---p~i~VPTt 110 (349)
T cd08550 65 EVVKALCGAEEQEADVIIGVGGGKTLDTAKAV--ADRLDK---PIVIVPTI 110 (349)
T ss_pred HHHHHHHHHHhcCCCEEEEecCcHHHHHHHHH--HHHcCC---CEEEeCCc
Confidence 45566777888899999999999887666432 445576 77776554
No 168
>PLN02253 xanthoxin dehydrogenase
Probab=56.89 E-value=1.1e+02 Score=25.88 Aligned_cols=33 Identities=12% Similarity=0.143 Sum_probs=20.1
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.++++|+||+|| + +.++++.|.++++. +.+++.
T Consensus 18 ~k~~lItGas~g-I--G~~la~~l~~~G~~--v~~~~~ 50 (280)
T PLN02253 18 GKVALVTGGATG-I--GESIVRLFHKHGAK--VCIVDL 50 (280)
T ss_pred CCEEEEECCCch-H--HHHHHHHHHHcCCE--EEEEeC
Confidence 356777788764 3 45566677766653 555443
No 169
>PRK05866 short chain dehydrogenase; Provisional
Probab=56.02 E-value=1.4e+02 Score=26.01 Aligned_cols=34 Identities=12% Similarity=-0.075 Sum_probs=22.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
..+++|+|||||- +.++++.|.++++ .+++++..
T Consensus 40 ~k~vlItGasggI---G~~la~~La~~G~--~Vi~~~R~ 73 (293)
T PRK05866 40 GKRILLTGASSGI---GEAAAEQFARRGA--TVVAVARR 73 (293)
T ss_pred CCEEEEeCCCcHH---HHHHHHHHHHCCC--EEEEEECC
Confidence 3667777888864 5666777766665 45555543
No 170
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=55.75 E-value=60 Score=22.73 Aligned_cols=46 Identities=17% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHhhHhcCCcEEEecCCC-cchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPG-TCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~-vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
++.++..+.+..||.+|-.||. ...- .+|.-.|+-.|+ +++-+..+
T Consensus 20 i~~~Ld~~~~~~~~~~lvhGga~~GaD-~iA~~wA~~~gv---~~~~~~ad 66 (71)
T PF10686_consen 20 IWAALDKVHARHPDMVLVHGGAPKGAD-RIAARWARERGV---PVIRFPAD 66 (71)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHH-HHHHHHHHHCCC---eeEEeCcC
Confidence 4566666777779999999999 5544 455566777787 77766544
No 171
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=55.68 E-value=1.9e+02 Score=27.57 Aligned_cols=128 Identities=12% Similarity=-0.016 Sum_probs=60.3
Q ss_pred CCCeEEEEEe--cC-hhhHHHHHHHHHHhhh-cCCCCeEEEEEcCCcchhhHHHHhhhhhhh---h-----ccc-CCcce
Q 027253 42 PQPLSTLIVL--GS-GGHTAEMMNLLSVLQM-DRFTPRFYIAAATDNMSLQKARVFEDSLLH---K-----KVI-KGSSA 108 (226)
Q Consensus 42 ~~~~kiliv~--Gt-GGH~~p~lal~~~l~~-~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~---~-----~~~-~~~~~ 108 (226)
++++||.|+| |. |.|+..+++..+.+.. ++...+++.+-.....-.-.+.+++....+ + ..+ +..+.
T Consensus 98 ~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kda 177 (444)
T PLN00112 98 KKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDA 177 (444)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcC
Confidence 4579999994 44 7788887776654442 233335555543333222222233322200 0 000 01223
Q ss_pred EEEEe--ecCccccchhHHHHHHHHHHHHHHHHhhHh-cCCcEEEecCCCcchhHHHHH-HHHHHcCC
Q 027253 109 QFMQI--YRSREVGQSYVTSVWTTLLATTHALWLMVK-IRPQVVLCNGPGTCIPLCVIA-FLFKVIGI 172 (226)
Q Consensus 109 ~~~~i--~r~r~~~~~~~~~~~~~l~~~~~a~~il~k-~kPdvVi~tGg~vsvP~~lAa-~lakllgi 172 (226)
++.-+ ..+|+.++.-.--+-.-..-+.+....|.+ ..||.++-.-+. |+=+.+ ++.+..|.
T Consensus 178 DiVVitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsN---PvDv~t~v~~k~sg~ 242 (444)
T PLN00112 178 EWALLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVGN---PCNTNALICLKNAPN 242 (444)
T ss_pred CEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCC---cHHHHHHHHHHHcCC
Confidence 33333 234444444332222223334444556667 589998888777 442222 23555554
No 172
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=54.87 E-value=31 Score=21.44 Aligned_cols=11 Identities=27% Similarity=0.875 Sum_probs=5.3
Q ss_pred hHHHHHHHHHH
Q 027253 6 DFYFYIMTIIA 16 (226)
Q Consensus 6 ~~~~~~~~~~~ 16 (226)
|||+|++.+++
T Consensus 8 dfylc~l~~ll 18 (43)
T PF11395_consen 8 DFYLCFLSFLL 18 (43)
T ss_pred HHHHHHHHHHH
Confidence 45555544443
No 173
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=54.85 E-value=71 Score=28.21 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=20.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
.++++|+||||+= +..+++.|..++++ +..+.
T Consensus 6 ~~~vlVTGatGfi---G~~l~~~L~~~G~~--V~~~~ 37 (340)
T PLN02653 6 RKVALITGITGQD---GSYLTEFLLSKGYE--VHGII 37 (340)
T ss_pred CCEEEEECCCCcc---HHHHHHHHHHCCCE--EEEEe
Confidence 4689999998853 44456666666654 44443
No 174
>PRK07024 short chain dehydrogenase; Provisional
Probab=54.84 E-value=1e+02 Score=25.78 Aligned_cols=32 Identities=19% Similarity=0.073 Sum_probs=21.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
++++|+||||| =+.++++.|.++++ .+.+++.
T Consensus 3 ~~vlItGas~g---IG~~la~~l~~~G~--~v~~~~r 34 (257)
T PRK07024 3 LKVFITGASSG---IGQALAREYARQGA--TLGLVAR 34 (257)
T ss_pred CEEEEEcCCcH---HHHHHHHHHHHCCC--EEEEEeC
Confidence 57888888884 55667777776665 4555554
No 175
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=54.64 E-value=1.2e+02 Score=24.92 Aligned_cols=34 Identities=6% Similarity=0.015 Sum_probs=21.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
..+++|+||||| -+.++++.|.+++++ +..++.+
T Consensus 5 ~~~vlItGasg~---iG~~l~~~l~~~G~~--V~~~~r~ 38 (251)
T PRK07231 5 GKVAIVTGASSG---IGEGIARRFAAEGAR--VVVTDRN 38 (251)
T ss_pred CcEEEEECCCCh---HHHHHHHHHHHCCCE--EEEEeCC
Confidence 357888888774 334566677666654 5555544
No 176
>PLN02828 formyltetrahydrofolate deformylase
Probab=54.40 E-value=1.1e+02 Score=27.13 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=25.0
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCC-eEEEEEcCC
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTP-RFYIAAATD 83 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~-~~~~~~~~d 83 (226)
++++|+.+-.+..||-.+++--+ .+...... ...++++.+
T Consensus 68 ~~~~riavlvSg~g~nl~~ll~~--~~~g~l~~eI~~ViSn~~ 108 (268)
T PLN02828 68 DPKYKIAVLASKQDHCLIDLLHR--WQDGRLPVDITCVISNHE 108 (268)
T ss_pred CCCcEEEEEEcCCChhHHHHHHh--hhcCCCCceEEEEEeCCC
Confidence 45689998888889988776554 43333222 455555553
No 177
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=54.36 E-value=99 Score=32.70 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=17.2
Q ss_pred HHhhHhcCCcEEEec-CCCcchhHH
Q 027253 138 LWLMVKIRPQVVLCN-GPGTCIPLC 161 (226)
Q Consensus 138 ~~il~k~kPdvVi~t-Gg~vsvP~~ 161 (226)
..++++++||+|+.+ ||-+++..+
T Consensus 75 ~~ii~~e~~D~Iip~~gg~~~l~~a 99 (1068)
T PRK12815 75 KRIIAREKPDALLATLGGQTALNLA 99 (1068)
T ss_pred HHHHHHhCcCEEEECCCCchHHHHH
Confidence 346788999999965 666665544
No 178
>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain. (Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.
Probab=54.27 E-value=34 Score=29.85 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhh
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~ 69 (226)
++|+|||| +.|++++++.+..
T Consensus 154 vlIAgGtG--ItP~~s~l~~~~~ 174 (283)
T cd06188 154 VFIGGGAG--MAPLRSHIFHLLK 174 (283)
T ss_pred EEEEeccc--HhHHHHHHHHHHh
Confidence 44559999 9999999998643
No 179
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=54.23 E-value=1.6e+02 Score=26.35 Aligned_cols=130 Identities=11% Similarity=0.039 Sum_probs=58.0
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcc-------c-CCcceEEEEe
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKV-------I-KGSSAQFMQI 113 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~-------~-~~~~~~~~~i 113 (226)
++++||.|+|- ||+...++.. +...+.-.++.++-.....-...+.+++........ + +..+.++.-+
T Consensus 4 ~~~~ki~iiGa--G~vG~~~a~~--l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIi 79 (315)
T PRK00066 4 KQHNKVVLVGD--GAVGSSYAYA--LVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVI 79 (315)
T ss_pred CCCCEEEEECC--CHHHHHHHHH--HHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEE
Confidence 34579988863 7777776663 223333335666544333222222233322100000 0 0122333333
Q ss_pred --ecCccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceE
Q 027253 114 --YRSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI 177 (226)
Q Consensus 114 --~r~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i 177 (226)
-.+|+.+++-.--.-.-..-+.+...-+.+..||.++-+.+..+=-++. .+.+..|+++.++
T Consensus 80 tag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~d~~~~--~~~k~sg~p~~~v 143 (315)
T PRK00066 80 TAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPVDILTY--ATWKLSGFPKERV 143 (315)
T ss_pred ecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcHHHHHH--HHHHHhCCCHHHE
Confidence 2334433332221112222233436667778899888877763322222 2245555543343
No 180
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=53.07 E-value=84 Score=25.64 Aligned_cols=28 Identities=25% Similarity=0.313 Sum_probs=22.5
Q ss_pred eEEEEE-ecChhhHHH-HHHHHHHhhhcCCC
Q 027253 45 LSTLIV-LGSGGHTAE-MMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p-~lal~~~l~~~~~~ 73 (226)
||++|+ ++.-|||.. |-+|++.|.. +.+
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~ 30 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQ 30 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCe
Confidence 688999 888899999 6788888875 543
No 181
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=52.64 E-value=26 Score=30.17 Aligned_cols=55 Identities=24% Similarity=0.231 Sum_probs=42.8
Q ss_pred cEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCcc---CCcchhhhhhcccCCccEEEe
Q 027253 147 QVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARV---KRLSLSGLLLYKLCIADQFFV 207 (226)
Q Consensus 147 dvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv---~~~sltgKll~~~~~ad~~~v 207 (226)
=+||+|-|--.+|+=+| ..+|-.|. ++|-+-|.... .+-..|||.| +-+||+++=
T Consensus 108 liviSnSGrNpvpie~A-~~~rekGa---~vI~vTSl~ySq~~~SRh~SGK~L--y~~aDvVlD 165 (243)
T COG4821 108 LIVISNSGRNPVPIEVA-EYAREKGA---KVIAVTSLDYSQSQASRHKSGKLL--YEFADVVLD 165 (243)
T ss_pred EEEEeCCCCCCcchHHH-HHHHhcCC---eEEEEehhhhhhhchhcccchhHH--hhhcceeee
Confidence 35899999999999887 45677785 99988776543 3456899999 679999753
No 182
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=52.39 E-value=93 Score=32.82 Aligned_cols=34 Identities=9% Similarity=0.098 Sum_probs=21.8
Q ss_pred CeEEEEEecCh---h----hHHHHHHHHHHhhhcCCCCeEEE
Q 027253 44 PLSTLIVLGSG---G----HTAEMMNLLSVLQMDRFTPRFYI 78 (226)
Q Consensus 44 ~~kiliv~GtG---G----H~~p~lal~~~l~~~~~~~~~~~ 78 (226)
..|||+.||.+ | |=+.+.++++.|++.+++ .+.+
T Consensus 6 ~~kvlviG~g~~~igq~~e~d~sg~q~~kalke~G~~-vi~v 46 (1050)
T TIGR01369 6 IKKILVIGSGPIVIGQAAEFDYSGSQACKALKEEGYR-VILV 46 (1050)
T ss_pred CcEEEEECCCcchhcchhcccchHHHHHHHHHHcCCE-EEEE
Confidence 46777776554 3 234467888889888875 4444
No 183
>PLN02764 glycosyltransferase family protein
Probab=51.54 E-value=25 Score=33.55 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=27.1
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
++||+++ -=.-||+.||+.+++.|..++.. .++++
T Consensus 5 ~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~-vT~~t 40 (453)
T PLN02764 5 KFHVLMYPWFATGHMTPFLFLANKLAEKGHT-VTFLL 40 (453)
T ss_pred CcEEEEECCcccccHHHHHHHHHHHHhCCCE-EEEEe
Confidence 4899999 55559999999999999877754 44443
No 184
>PRK10926 ferredoxin-NADP reductase; Provisional
Probab=51.50 E-value=39 Score=28.91 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=24.5
Q ss_pred eEEE-EEecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCCc
Q 027253 45 LSTL-IVLGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATDN 84 (226)
Q Consensus 45 ~kil-iv~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d~ 84 (226)
.+++ |+|||| +.|++++++++...+. ....++.+..+.
T Consensus 107 ~~~vlIagGtG--ItP~~s~l~~~~~~~~~~~v~l~~g~r~~ 146 (248)
T PRK10926 107 ETLWMLATGTA--IGPYLSILQEGKDLERFKNLVLVHAARYA 146 (248)
T ss_pred CeEEEEEeeee--HHHHHHHHHhhHhhCCCCcEEEEEeCCcH
Confidence 3555 559999 9999999998764322 234455555443
No 185
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=50.41 E-value=32 Score=29.42 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=27.8
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.|++++-|.|||...+-.+++++..+..+..++++..
T Consensus 101 ~~ivivngHgGN~~~l~~~~~~l~~~~~~~~v~~~~~ 137 (237)
T PF02633_consen 101 RRIVIVNGHGGNIAALEAAARELRQEYPGVKVFVINW 137 (237)
T ss_dssp -EEEEEESSTTHHHHHHHHHHHHHHHGCC-EEEEEEG
T ss_pred CEEEEEECCHhHHHHHHHHHHHHHhhCCCcEEEEeec
Confidence 5788889999999999999999987633445555543
No 186
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=50.32 E-value=2e+02 Score=26.09 Aligned_cols=43 Identities=14% Similarity=-0.094 Sum_probs=26.3
Q ss_pred HHHHHHhhHhcCC-cEEEecCCCcchhHHHHH-HHHHHc-CCccceEEE
Q 027253 134 TTHALWLMVKIRP-QVVLCNGPGTCIPLCVIA-FLFKVI-GIRWSSIFY 179 (226)
Q Consensus 134 ~~~a~~il~k~kP-dvVi~tGg~vsvP~~lAa-~lakll-gi~~~~iv~ 179 (226)
+.....-+.+..| |.++-+-+. |+=+.+ .+.+.. |+++.+++=
T Consensus 108 ~~~i~~~i~~~~~~~~iiivvsN---PvDv~t~v~~k~s~g~p~~rViG 153 (323)
T TIGR01759 108 FKEQGKALNKVAKKDVKVLVVGN---PANTNALIASKNAPDIPPKNFSA 153 (323)
T ss_pred HHHHHHHHHhhCCCCeEEEEeCC---cHHHHHHHHHHHcCCCCHHHEEE
Confidence 3344456667777 998888776 553332 336777 776555544
No 187
>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi
Probab=50.02 E-value=41 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=23.9
Q ss_pred eEEEE-EecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLI-VLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kili-v~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
-++++ +|||| +.|++++++++.+++ .+..++.+..+
T Consensus 98 ~~~lliagGtG--iap~~~~l~~~~~~~-~~v~l~~~~r~ 134 (243)
T cd06192 98 GTVLLVAGGIG--LAPLLPIAKKLAANG-NKVTVLAGAKK 134 (243)
T ss_pred CEEEEEeCccc--HHHHHHHHHHHHHCC-CeEEEEEecCc
Confidence 45554 48998 899999999987643 23444545443
No 188
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=50.01 E-value=25 Score=30.55 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=23.0
Q ss_pred ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 51 LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 51 ~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
-|.||-|.-+.+|+++++.++. ++.+++++
T Consensus 5 vG~gGKTtl~~~l~~~~~~~g~--~v~~TTTT 34 (232)
T TIGR03172 5 VGAGGKTSTMFWLAAEYRKEGY--RVLVTTTT 34 (232)
T ss_pred EcCCcHHHHHHHHHHHHHHCCC--eEEEECCc
Confidence 3459999999999999988775 45555444
No 189
>PRK12827 short chain dehydrogenase; Provisional
Probab=49.77 E-value=1.4e+02 Score=24.37 Aligned_cols=27 Identities=30% Similarity=0.247 Sum_probs=18.3
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.++++|+||||| + +..+++.|.+++++
T Consensus 6 ~~~ilItGasg~-i--G~~la~~l~~~g~~ 32 (249)
T PRK12827 6 SRRVLITGGSGG-L--GRAIAVRLAADGAD 32 (249)
T ss_pred CCEEEEECCCCh-H--HHHHHHHHHHCCCe
Confidence 467888888865 3 44666777777754
No 190
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=49.50 E-value=82 Score=28.49 Aligned_cols=40 Identities=23% Similarity=0.390 Sum_probs=25.7
Q ss_pred CeEEEEEecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 44 PLSTLIVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 44 ~~kiliv~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
...++|+|+|| |=|.-+.++++.+.....+.++..+.+..
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~ 188 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTG 188 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCC
Confidence 36788889888 77888888887753222223555555443
No 191
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=48.76 E-value=1.9e+02 Score=25.55 Aligned_cols=39 Identities=21% Similarity=0.351 Sum_probs=22.3
Q ss_pred hhHhcCCcEEEecCCCcchhHHHHHH-HHHHcCCccceEEEEc
Q 027253 140 LMVKIRPQVVLCNGPGTCIPLCVIAF-LFKVIGIRWSSIFYVE 181 (226)
Q Consensus 140 il~k~kPdvVi~tGg~vsvP~~lAa~-lakllgi~~~~iv~~E 181 (226)
.+.+++||++|-.+|..+.|.=-.|. +.+-.|+ |.++|-
T Consensus 55 ~~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~i---P~IvI~ 94 (277)
T PRK00994 55 MLEEWKPDFVIVISPNPAAPGPKKAREILKAAGI---PCIVIG 94 (277)
T ss_pred HHHhhCCCEEEEECCCCCCCCchHHHHHHHhcCC---CEEEEc
Confidence 44566777777777777776554331 1122355 666663
No 192
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=48.70 E-value=74 Score=29.78 Aligned_cols=94 Identities=15% Similarity=0.146 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCcEEEecC-CCcchhHHHHHHHHHHcCCccceEEEEccCC-ccCCcchhhhhhcccCC
Q 027253 124 VTSVWTTLLATTHALWLMVKIRPQVVLCNG-PGTCIPLCVIAFLFKVIGIRWSSIFYVESIA-RVKRLSLSGLLLYKLCI 201 (226)
Q Consensus 124 ~~~~~~~l~~~~~a~~il~k~kPdvVi~tG-g~vsvP~~lAa~lakllgi~~~~iv~~Esna-rv~~~sltgKll~~~~~ 201 (226)
+..++++++...+..+.+...+||++|+-= |..-+++.-. .|-.| ++.|+|+.=+-+ =.=.++++-++. ++
T Consensus 64 L~~lp~llk~~~~~~~~i~~~kpD~~i~IDsPdFnl~vak~---lrk~~-p~i~iihYV~PsVWAWr~~Ra~~i~---~~ 136 (381)
T COG0763 64 LGRLPRLLKIRRELVRYILANKPDVLILIDSPDFNLRVAKK---LRKAG-PKIKIIHYVSPSVWAWRPKRAVKIA---KY 136 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCCCCchHHHHH---HHHhC-CCCCeEEEECcceeeechhhHHHHH---HH
Confidence 344556666666777777789999998753 4555555522 34455 112666654421 012588888886 68
Q ss_pred ccEEEeechhhhhhCCC----ceEEec
Q 027253 202 ADQFFVQWPQLQRKYPR----AHYVGC 224 (226)
Q Consensus 202 ad~~~vq~e~~~~~~p~----a~y~G~ 224 (226)
+|.++.=+|--.++|.+ ++|+|.
T Consensus 137 ~D~lLailPFE~~~y~k~g~~~~yVGH 163 (381)
T COG0763 137 VDHLLAILPFEPAFYDKFGLPCTYVGH 163 (381)
T ss_pred hhHeeeecCCCHHHHHhcCCCeEEeCC
Confidence 99988877766666632 688884
No 193
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=48.43 E-value=1.3e+02 Score=26.64 Aligned_cols=26 Identities=12% Similarity=0.112 Sum_probs=18.2
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
||++|+|||| +=+..+++.|.+++.+
T Consensus 1 mkilITGgtG---~iG~~l~~~L~~~g~~ 26 (352)
T PRK10084 1 MKILVTGGAG---FIGSAVVRHIINNTQD 26 (352)
T ss_pred CeEEEECCCc---HHhHHHHHHHHHhCCC
Confidence 6899999998 3455667777665544
No 194
>PRK06181 short chain dehydrogenase; Provisional
Probab=48.42 E-value=1.6e+02 Score=24.56 Aligned_cols=32 Identities=22% Similarity=0.063 Sum_probs=20.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||||| -+.++++.|.+++++ +..+..
T Consensus 2 ~~vlVtGasg~---iG~~la~~l~~~g~~--Vi~~~r 33 (263)
T PRK06181 2 KVVIITGASEG---IGRALAVRLARAGAQ--LVLAAR 33 (263)
T ss_pred CEEEEecCCcH---HHHHHHHHHHHCCCE--EEEEeC
Confidence 36788898886 456666677666653 444443
No 195
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=48.33 E-value=1.2e+02 Score=26.75 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=26.5
Q ss_pred CcEEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCCc
Q 027253 146 PQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIAR 185 (226)
Q Consensus 146 PdvVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esnar 185 (226)
||+++-+-|..---.+ .=|+.+|| |+ .++++||.
T Consensus 157 Pd~l~ViDp~~e~iAv---~EA~klgI---PVvAlvDTn~d 191 (252)
T COG0052 157 PDVLFVIDPRKEKIAV---KEANKLGI---PVVALVDTNCD 191 (252)
T ss_pred CCEEEEeCCcHhHHHH---HHHHHcCC---CEEEEecCCCC
Confidence 9999999998775443 23799999 65 57899985
No 196
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=48.24 E-value=1.7e+02 Score=24.63 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=20.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||||| =+.++++.|.+++++ +.+++.
T Consensus 6 k~vlItGas~g---IG~~ia~~l~~~G~~--V~~~~r 37 (262)
T TIGR03325 6 EVVLVTGGASG---LGRAIVDRFVAEGAR--VAVLDK 37 (262)
T ss_pred cEEEEECCCCh---HHHHHHHHHHHCCCE--EEEEeC
Confidence 56777788887 345666777776654 555543
No 197
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=47.37 E-value=43 Score=30.41 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=30.7
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+-+....+++.++|+||+-|||+..=++=+ +|...|+ |+|.+=+-
T Consensus 76 v~~~~~~~~~~~~d~IIaiGGGsv~D~ak~--vA~~rgi---p~I~IPTT 120 (350)
T PRK00843 76 VEKVEEKAKDVNAGFLIGVGGGKVIDVAKL--AAYRLGI---PFISVPTA 120 (350)
T ss_pred HHHHHHHhhccCCCEEEEeCCchHHHHHHH--HHHhcCC---CEEEeCCC
Confidence 334455566778999999999988765532 2455677 77766554
No 198
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=47.35 E-value=1.6e+02 Score=25.39 Aligned_cols=42 Identities=14% Similarity=0.131 Sum_probs=26.8
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhh
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLL 195 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKl 195 (226)
.-|+|||.|||+++-=+ -.+|. |.+++-.....+..-.+.++
T Consensus 250 ~ad~vIs~~G~~t~~Ea------~~~g~---P~l~ip~~~~~EQ~~~a~~l 291 (318)
T PF13528_consen 250 AADLVISKGGYTTISEA------LALGK---PALVIPRPGQDEQEYNARKL 291 (318)
T ss_pred hCCEEEECCCHHHHHHH------HHcCC---CEEEEeCCCCchHHHHHHHH
Confidence 37999999999876444 23576 88888764322334344333
No 199
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=47.22 E-value=1.5e+02 Score=27.05 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=23.0
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
+..++ |+|.|= +-+.|++|.++|+. +++++.+.
T Consensus 50 ~WAVVTGaTDGI---GKayA~eLAkrG~n--vvLIsRt~ 83 (312)
T KOG1014|consen 50 SWAVVTGATDGI---GKAYARELAKRGFN--VVLISRTQ 83 (312)
T ss_pred CEEEEECCCCcc---hHHHHHHHHHcCCE--EEEEeCCH
Confidence 77777 777773 45567788888876 66667643
No 200
>PRK05802 hypothetical protein; Provisional
Probab=46.86 E-value=57 Score=29.37 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=25.5
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDN 84 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~ 84 (226)
.+++++ ||+| +.|++.+++.+..++.+ ..++.+..+.
T Consensus 173 ~~~llIaGGiG--IaPl~~l~~~l~~~~~~-v~li~g~r~~ 210 (320)
T PRK05802 173 GKSLVIARGIG--QAPGVPVIKKLYSNGNK-IIVIIDKGPF 210 (320)
T ss_pred CeEEEEEeEEe--HHHHHHHHHHHHHcCCc-EEEEEeCCCH
Confidence 455555 8998 99999999998765533 4555555443
No 201
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=46.76 E-value=1.4e+02 Score=23.42 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=29.2
Q ss_pred CCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 43 QPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 43 ~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
++.|+++. .+.=+|.--..-++-.|+..+|+ +.+.|..
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~e--Vi~LG~~ 40 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFE--VINLGVM 40 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCE--EEECCCC
Confidence 45677777 78889999999898889888886 4444553
No 202
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=46.66 E-value=1.7e+02 Score=26.85 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=27.8
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCCc
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIAR 185 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esnar 185 (226)
.||+||..++..--..+.= |+.+|| |+ -++++||.
T Consensus 152 ~Pd~viv~d~~~e~~AI~E---A~kl~I---PvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQE---AQRLGI---PVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHH---HHHcCC---CEEEEeeCCCC
Confidence 6999999999987655533 789999 65 47899985
No 203
>PLN02554 UDP-glycosyltransferase family protein
Probab=46.56 E-value=26 Score=33.44 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=23.8
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcC
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~ 71 (226)
++|++++ .=.=||+.||+.+|+.|-.++
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G 30 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSD 30 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCC
Confidence 4788888 666899999999999998765
No 204
>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,
Probab=46.16 E-value=48 Score=28.29 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=22.3
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
++++|||| +.|++++++++.+.+.+ ..++.+..
T Consensus 101 lliagG~G--iaP~~~~l~~~~~~~~~-v~l~~~~r 133 (248)
T cd06219 101 VFVGGGVG--IAPIYPIAKALKEAGNR-VITIIGAR 133 (248)
T ss_pred EEEeCccc--HHHHHHHHHHHHHcCCe-EEEEEEcC
Confidence 45558998 99999999987654433 34444443
No 205
>PRK07831 short chain dehydrogenase; Provisional
Probab=45.93 E-value=1.8e+02 Score=24.36 Aligned_cols=33 Identities=9% Similarity=-0.011 Sum_probs=21.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
..+++|+||+|.-+. .++++.|.++++. ++++.
T Consensus 17 ~k~vlItG~sg~gIG--~~ia~~l~~~G~~--V~~~~ 49 (262)
T PRK07831 17 GKVVLVTAAAGTGIG--SATARRALEEGAR--VVISD 49 (262)
T ss_pred CCEEEEECCCcccHH--HHHHHHHHHcCCE--EEEEe
Confidence 467888898875554 5566677666654 45444
No 206
>PRK07814 short chain dehydrogenase; Provisional
Probab=45.88 E-value=1.8e+02 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.014 Sum_probs=20.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||||| =+.++++.|.+++++ +.+++.
T Consensus 10 ~~~vlItGasgg---IG~~~a~~l~~~G~~--Vi~~~r 42 (263)
T PRK07814 10 DQVAVVTGAGRG---LGAAIALAFAEAGAD--VLIAAR 42 (263)
T ss_pred CCEEEEECCCCh---HHHHHHHHHHHCCCE--EEEEeC
Confidence 356777788775 345566677666753 444443
No 207
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=45.81 E-value=47 Score=29.94 Aligned_cols=42 Identities=24% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 136 HALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+....+++ ++|+||+-|||+..=++=+ +|-+.++ |++-+=+-
T Consensus 72 ~~~~~~~~-~~d~IIaiGGGsv~D~aK~--iA~~~gi---p~I~VPTT 113 (332)
T cd08549 72 EVLIKLDK-DTEFLLGIGSGTIIDLVKF--VSFKVGK---PFISVPTA 113 (332)
T ss_pred HHHHHhhc-CCCEEEEECCcHHHHHHHH--HHHHcCC---CEEEeCCC
Confidence 34445555 9999999999988765532 2455677 87777654
No 208
>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed
Probab=45.64 E-value=47 Score=29.07 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=24.3
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
-+++++ ||+| +.|++.+++++.+++.+ ..++.+..+
T Consensus 99 ~~~llIaGGiG--iaPl~~l~~~l~~~~~~-v~l~~g~r~ 135 (281)
T PRK06222 99 GTVVCVGGGVG--IAPVYPIAKALKEAGNK-VITIIGARN 135 (281)
T ss_pred CeEEEEeCcCc--HHHHHHHHHHHHHCCCe-EEEEEecCC
Confidence 355555 8887 99999999998765533 444545443
No 209
>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol. This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.
Probab=45.35 E-value=54 Score=27.58 Aligned_cols=36 Identities=19% Similarity=0.072 Sum_probs=23.2
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCC-CeEEEEEcCCc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAATDN 84 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~-~~~~~~~~~d~ 84 (226)
++|+|||| +.|++++++++..++.. ...++.+..+.
T Consensus 113 v~iagG~G--iaP~~~~l~~~~~~~~~~~v~l~~~~r~~ 149 (238)
T cd06211 113 IFIAGGSG--LSSPRSMILDLLERGDTRKITLFFGARTR 149 (238)
T ss_pred EEEeCCcC--HHHHHHHHHHHHhcCCCCcEEEEEecCCh
Confidence 44558998 89999999987654432 24444454333
No 210
>PF01470 Peptidase_C15: Pyroglutamyl peptidase This is family C15 in the peptidase classification. ; InterPro: IPR000816 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C15 (pyroglutamyl peptidase I, clan CF). The type example being pyroglutamyl peptidase I of Bacillus amyloliquefaciens. Pyroglutamyl/pyrrolidone carboxyl peptidase (Pcp or PYRase) is an exopeptidase that hydrolytically removes the pGlu from pGlu-peptides or pGlu-proteins [, ]. PYRase has been found in prokaryotes and eukaryotes where at least two different classes have been characterised: the first containing bacterial and animal type I PYRases, and the second containing animal type II and serum PYRases. Type I and bacterial PYRases are soluble enzymes, while type II PYRases are membrane-bound. The primary application of PYRase has been its utilisation for protein or peptide sequencing, and bacterial diagnosis []. The conserved residues Cys-144 and His-168 have been identified by inhibition and mutagenesis studies [, ].; GO: 0006508 proteolysis; PDB: 1A2Z_A 1IU8_A 3RNZ_A 3RO0_D 1AUG_D 2EBJ_A 3LAC_A 1X12_B 1Z8X_B 1X10_C ....
Probab=45.23 E-value=51 Score=27.70 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=16.0
Q ss_pred eEEEEE--ecChhh-HHHHHHHHHHhhh
Q 027253 45 LSTLIV--LGSGGH-TAEMMNLLSVLQM 69 (226)
Q Consensus 45 ~kiliv--~GtGGH-~~p~lal~~~l~~ 69 (226)
|||+++ +--||| .+|--.+++.|.+
T Consensus 1 m~ILvTGFgpF~~~~~NpS~~~v~~L~~ 28 (202)
T PF01470_consen 1 MRILVTGFGPFGGVPVNPSWELVKRLPG 28 (202)
T ss_dssp EEEEEEEE-S-TT-SS-HHHHHHHHHTT
T ss_pred CEEEEecccCCCCCCCChHHHHHHHcCC
Confidence 788888 566776 5777778888764
No 211
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=45.13 E-value=39 Score=30.18 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=20.9
Q ss_pred CCCCCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 40 KSPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 40 ~~~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
+.++.|+++|+||||. =+..+++.|.+++++
T Consensus 6 ~~~~~~~vLVtG~~Gf---IG~~l~~~L~~~G~~ 36 (353)
T PLN02896 6 RESATGTYCVTGATGY---IGSWLVKLLLQRGYT 36 (353)
T ss_pred cccCCCEEEEECCCcH---HHHHHHHHHHHCCCE
Confidence 3456799999999873 344556666666654
No 212
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=45.02 E-value=1.2e+02 Score=25.19 Aligned_cols=36 Identities=17% Similarity=0.202 Sum_probs=26.5
Q ss_pred cCCcEEEecCCCcchhHHHHHHHHHHcCCccceEE-EEccCCc
Q 027253 144 IRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIF-YVESIAR 185 (226)
Q Consensus 144 ~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv-~~Esnar 185 (226)
..||+||.+.+..---++.= |..++| |++ ++++|+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~E---a~~l~I---P~I~i~Dtn~~ 162 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIRE---ASKLGI---PVIAIVDTNCD 162 (193)
T ss_pred cCCCEEEEeCCccchHHHHH---HHHcCC---CEEEEecCCCC
Confidence 46999999999877544433 688899 664 6778763
No 213
>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]
Probab=44.67 E-value=61 Score=29.09 Aligned_cols=24 Identities=17% Similarity=0.265 Sum_probs=18.8
Q ss_pred CeEEEE-EecChhhHHHHHHHHHHhhh
Q 027253 44 PLSTLI-VLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 44 ~~kili-v~GtGGH~~p~lal~~~l~~ 69 (226)
.-++.+ +|||| ++||++|+++..+
T Consensus 156 ~~~l~miAgGtG--ItPmlqii~~il~ 180 (286)
T KOG0534|consen 156 AKHLGMIAGGTG--ITPMLQLIRAILK 180 (286)
T ss_pred cceEEEEecccc--hhhHHHHHHHHhc
Confidence 356654 49999 9999999998654
No 214
>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed
Probab=44.24 E-value=57 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=23.9
Q ss_pred eEEE-EEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTL-IVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kil-iv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
-+++ |++||| +.|++++++++..++.+ ..++.+..+
T Consensus 103 ~~~vlIagG~G--iaP~~s~l~~~~~~~~~-v~l~~~~r~ 139 (250)
T PRK00054 103 GKVLLVGGGIG--VAPLYELAKELKKKGVE-VTTVLGART 139 (250)
T ss_pred CeEEEEecccc--HHHHHHHHHHHHHcCCc-EEEEEEcCC
Confidence 3544 558998 89999999998654433 444445443
No 215
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=44.21 E-value=3e+02 Score=26.46 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=26.6
Q ss_pred eEEEEE--ecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIV--LGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv--~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
-||+++ .-++=|+.-+-+++++|.++|++ .+++..
T Consensus 21 ~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~-VTvi~p 57 (507)
T PHA03392 21 ARILAVFPTPAYSHHSVFKVYVEALAERGHN-VTVIKP 57 (507)
T ss_pred ccEEEEcCCCCCcHHHHHHHHHHHHHHcCCe-EEEEec
Confidence 347766 24566999999999999999976 666644
No 216
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=44.13 E-value=1.8e+02 Score=23.94 Aligned_cols=33 Identities=15% Similarity=0.125 Sum_probs=22.1
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
.+++|+||||| -+.++++.|.+++++ ++.++..
T Consensus 5 ~~vlItG~sg~---iG~~la~~l~~~g~~--v~~~~r~ 37 (258)
T PRK12429 5 KVALVTGAASG---IGLEIALALAKEGAK--VVIADLN 37 (258)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCe--EEEEeCC
Confidence 57888888874 356777788777654 5555543
No 217
>PRK09072 short chain dehydrogenase; Provisional
Probab=44.04 E-value=1.9e+02 Score=24.18 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=20.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+|||||-- .++++.|.+++++ +.+++.
T Consensus 6 ~~vlItG~s~~iG---~~ia~~l~~~G~~--V~~~~r 37 (263)
T PRK09072 6 KRVLLTGASGGIG---QALAEALAAAGAR--LLLVGR 37 (263)
T ss_pred CEEEEECCCchHH---HHHHHHHHHCCCE--EEEEEC
Confidence 5688888888654 3455566666654 555554
No 218
>PRK07825 short chain dehydrogenase; Provisional
Probab=43.91 E-value=2e+02 Score=24.27 Aligned_cols=27 Identities=15% Similarity=-0.043 Sum_probs=18.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.++++|+||||| =+.++++.|.++++.
T Consensus 5 ~~~ilVtGasgg---iG~~la~~l~~~G~~ 31 (273)
T PRK07825 5 GKVVAITGGARG---IGLATARALAALGAR 31 (273)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCE
Confidence 357888898887 345566666666654
No 219
>PRK06138 short chain dehydrogenase; Provisional
Probab=43.90 E-value=1.8e+02 Score=23.89 Aligned_cols=33 Identities=9% Similarity=0.045 Sum_probs=19.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+.+++|+||+|| -+.++++.|.++++ +++.++.
T Consensus 5 ~k~~lItG~sg~---iG~~la~~l~~~G~--~v~~~~r 37 (252)
T PRK06138 5 GRVAIVTGAGSG---IGRATAKLFAREGA--RVVVADR 37 (252)
T ss_pred CcEEEEeCCCch---HHHHHHHHHHHCCC--eEEEecC
Confidence 357777788765 23445556666664 3555443
No 220
>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster. PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.
Probab=43.54 E-value=72 Score=26.04 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=22.1
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
+++++||| +.|++++++++.+.+.. ..++.+..+
T Consensus 102 v~ia~GtG--iap~~~il~~~~~~~~~-v~l~~~~r~ 135 (211)
T cd06185 102 LLIAGGIG--ITPILSMARALAARGAD-FELHYAGRS 135 (211)
T ss_pred EEEeccch--HhHHHHHHHHHHhCCCC-EEEEEEeCC
Confidence 45558998 89999999998654333 334444433
No 221
>PRK05884 short chain dehydrogenase; Provisional
Probab=43.39 E-value=40 Score=27.99 Aligned_cols=31 Identities=10% Similarity=0.093 Sum_probs=21.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
||++++||+|| -+.++++.|.+++++ +..++
T Consensus 1 m~vlItGas~g---iG~~ia~~l~~~g~~--v~~~~ 31 (223)
T PRK05884 1 VEVLVTGGDTD---LGRTIAEGFRNDGHK--VTLVG 31 (223)
T ss_pred CeEEEEeCCch---HHHHHHHHHHHCCCE--EEEEe
Confidence 57889999987 556677777766653 44443
No 222
>CHL00194 ycf39 Ycf39; Provisional
Probab=43.18 E-value=31 Score=30.36 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=18.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|||+|+|||| +-+-.++++|.+++++
T Consensus 1 MkIlVtGatG---~iG~~lv~~Ll~~g~~ 26 (317)
T CHL00194 1 MSLLVIGATG---TLGRQIVRQALDEGYQ 26 (317)
T ss_pred CEEEEECCCc---HHHHHHHHHHHHCCCe
Confidence 6899999988 3555566677666764
No 223
>PRK12829 short chain dehydrogenase; Provisional
Probab=42.86 E-value=1.9e+02 Score=23.91 Aligned_cols=34 Identities=12% Similarity=0.120 Sum_probs=22.3
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+.++++|+||+||= +..+++.|.+++++ +..++.
T Consensus 10 ~~~~vlItGa~g~i---G~~~a~~L~~~g~~--V~~~~r 43 (264)
T PRK12829 10 DGLRVLVTGGASGI---GRAIAEAFAEAGAR--VHVCDV 43 (264)
T ss_pred CCCEEEEeCCCCcH---HHHHHHHHHHCCCE--EEEEeC
Confidence 44788888888653 45667777777654 555554
No 224
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=42.28 E-value=1.9e+02 Score=25.12 Aligned_cols=29 Identities=7% Similarity=0.076 Sum_probs=19.6
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
.-|++|+.||.|+.=. -.+|+ |++.+...
T Consensus 241 ~aDl~Is~~G~T~~E~-------~a~g~---P~i~i~~~ 269 (279)
T TIGR03590 241 EADLAIGAAGSTSWER-------CCLGL---PSLAICLA 269 (279)
T ss_pred HCCEEEECCchHHHHH-------HHcCC---CEEEEEec
Confidence 3799999988543322 23577 98888554
No 225
>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in
Probab=42.27 E-value=64 Score=26.31 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=22.9
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d 83 (226)
-+++++ +||| +.|++++++.+..... ....++.+..+
T Consensus 98 ~~~v~ia~G~G--iap~~~~l~~~~~~~~~~~v~l~~~~r~ 136 (223)
T cd00322 98 GPVVLIAGGIG--ITPFRSMLRHLAADKPGGEITLLYGART 136 (223)
T ss_pred CcEEEEecCCc--hhHHHHHHHHHHhhCCCCcEEEEEecCC
Confidence 345444 7887 9999999999865421 22344445443
No 226
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=42.12 E-value=1.5e+02 Score=27.23 Aligned_cols=23 Identities=4% Similarity=-0.031 Sum_probs=18.6
Q ss_pred HhhHhcCCcEEEecCCCcchhHH
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.++.+++||.||=+-+..+++=.
T Consensus 61 ~vf~~~~idaViHFAa~~~VgES 83 (329)
T COG1087 61 AVFEENKIDAVVHFAASISVGES 83 (329)
T ss_pred HHHHhcCCCEEEECccccccchh
Confidence 35567899999999999888754
No 227
>COG1899 DYS1 Deoxyhypusine synthase [Posttranslational modification, protein turnover, chaperones]
Probab=42.08 E-value=75 Score=28.94 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=15.2
Q ss_pred ChhhHHHHHHHHHHhhhcC
Q 027253 53 SGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~~~ 71 (226)
.++|+.+|..+.+++.+..
T Consensus 36 ~a~~l~eA~~I~~~m~~~~ 54 (318)
T COG1899 36 QARRLAEAVEILREMLESR 54 (318)
T ss_pred cchhHHHHHHHHHHHHhhc
Confidence 5689999999999876543
No 228
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=41.91 E-value=1.5e+02 Score=26.48 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=16.7
Q ss_pred HhhHhcCCcEEEecCCCcchhHH
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
..+++.+||++|+.+=+--+|--
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~ 94 (313)
T TIGR00460 72 PLVRELKPDVIVVVSFGKILPKE 94 (313)
T ss_pred HHHHhhCCCEEEEccchhhCCHH
Confidence 34667899999998865556654
No 229
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=41.74 E-value=1.4e+02 Score=26.35 Aligned_cols=121 Identities=16% Similarity=0.152 Sum_probs=59.4
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecC-cccc
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRS-REVG 120 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~-r~~~ 120 (226)
+++||||++=--|=|--=..+|++.|++.+ .+++++-....|.. ...+.- .....+..+... +.
T Consensus 3 ~~~M~ILltNDDGi~a~Gi~aL~~~l~~~g---~V~VvAP~~~~Sg~-----g~ait~-----~~pl~~~~~~~~~~~-- 67 (257)
T PRK13932 3 DKKPHILVCNDDGIEGEGIHVLAASMKKIG---RVTVVAPAEPHSGM-----SHAMTL-----GVPLRIKEYQKNNRF-- 67 (257)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHhCC---CEEEEcCCCCCCCC-----cccccC-----CCCeEEEEEccCCCc--
Confidence 456999999666666655667777887643 36666543222211 000000 012333333211 10
Q ss_pred chhHHHHHHHHHHHHHHHHhhHhcCCcEEEe---cCCCcchh-----HHHHHHHHHHcCCccceEEEEc
Q 027253 121 QSYVTSVWTTLLATTHALWLMVKIRPQVVLC---NGPGTCIP-----LCVIAFLFKVIGIRWSSIFYVE 181 (226)
Q Consensus 121 ~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~---tGg~vsvP-----~~lAa~lakllgi~~~~iv~~E 181 (226)
..|.-+ .+-.-++..++..+...+||+||+ .|...+.- .+-||+-|.+.|+ |-+-+=
T Consensus 68 ~~y~v~-GTPaDCV~lal~~~~~~~pDLVvSGIN~G~N~G~dv~ySGTVgAA~Ea~~~Gi---PsIA~S 132 (257)
T PRK13932 68 FGYTVS-GTPVDCIKVALSHILPEKPDLIVSGINYGSNTATNTLYSGTVAAALEGAIQGI---PSLAFS 132 (257)
T ss_pred eEEEEc-CcHHHHHHHHHHhhcCCCCCEEEECCcCCCCCCcCEecchhHHHHHHHHHcCC---CeEEEE
Confidence 001000 111234556666666678999997 23333221 1234455788998 665443
No 230
>COG0458 CarB Carbamoylphosphate synthase large subunit (split gene in MJ) [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=41.37 E-value=1.3e+02 Score=28.39 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=22.8
Q ss_pred HHHhhHhcCCcE-EEecCCCcchhHHHH
Q 027253 137 ALWLMVKIRPQV-VLCNGPGTCIPLCVI 163 (226)
Q Consensus 137 a~~il~k~kPdv-Vi~tGg~vsvP~~lA 163 (226)
..+++.+++||. +-++||-++++++++
T Consensus 62 v~~Ii~~E~~Dailp~~ggqt~Ln~~~~ 89 (400)
T COG0458 62 VEKIIEKERPDAILPTLGGQTALNAALE 89 (400)
T ss_pred HHHHHHhcCcceeecccCCcchhhHHHH
Confidence 357889999999 678899999998865
No 231
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.24 E-value=2e+02 Score=23.63 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=18.1
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.+++|+|||||= +.++++.|.+++++
T Consensus 5 ~~vlItGa~g~i---G~~~a~~l~~~g~~ 30 (250)
T PRK08063 5 KVALVTGSSRGI---GKAIALRLAEEGYD 30 (250)
T ss_pred CEEEEeCCCchH---HHHHHHHHHHCCCE
Confidence 578888888653 55677777777654
No 232
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=40.99 E-value=3.1e+02 Score=25.67 Aligned_cols=29 Identities=14% Similarity=0.088 Sum_probs=19.1
Q ss_pred CCCCCeEEEEEe--cC-hhhHHHHHHHHHHhh
Q 027253 40 KSPQPLSTLIVL--GS-GGHTAEMMNLLSVLQ 68 (226)
Q Consensus 40 ~~~~~~kiliv~--Gt-GGH~~p~lal~~~l~ 68 (226)
+..+|+||.|+| |. |.|+...+...+...
T Consensus 40 ~~~~p~KV~IIGAaG~VG~~~A~~l~~~~l~~ 71 (387)
T TIGR01757 40 SWKKTVNVAVSGAAGMISNHLLFMLASGEVFG 71 (387)
T ss_pred cCCCCeEEEEECCCcHHHHHHHHHHHhccccC
Confidence 445689999994 44 667777666554443
No 233
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=40.90 E-value=1.1e+02 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.6
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhh
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~ 69 (226)
|||..+ =|--|-+.|+++++++|..
T Consensus 1 ~ki~aisD~RtGnt~QaiaLa~~l~r 26 (329)
T COG3660 1 MKIWAISDGRTGNTHQAIALAEQLTR 26 (329)
T ss_pred CceEEeecCCCccHHHHHHHHHHhhc
Confidence 566666 6888999999999999864
No 234
>PF02504 FA_synthesis: Fatty acid synthesis protein; InterPro: IPR003664 The plsX gene is part of the bacterial fab gene cluster which encodes several key fatty acid biosynthetic enzymes []. The plsX gene encodes a poorly understood enzyme of phospholipid metabolism [].; GO: 0003824 catalytic activity, 0006633 fatty acid biosynthetic process; PDB: 1VI1_B 1U7N_B.
Probab=40.70 E-value=1.6e+02 Score=26.80 Aligned_cols=104 Identities=9% Similarity=0.086 Sum_probs=47.3
Q ss_pred eEEEEE--ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccch
Q 027253 45 LSTLIV--LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQS 122 (226)
Q Consensus 45 ~kiliv--~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~ 122 (226)
|||.+= ||-=|--.-.-...+.+++. .+..++++|..+.++..... ++ ......+.++.-+..=....+
T Consensus 1 mrIavDaMGgD~~p~~~v~ga~~a~~~~-~~~~i~lvG~~~~i~~~l~~-~~-------~~~~~~i~iv~a~~~I~m~d~ 71 (323)
T PF02504_consen 1 MRIAVDAMGGDNGPEEVVEGAILALKEN-PDLEIVLVGDEEEIKPLLEK-YG-------FELNSRIEIVHASEVIEMDDK 71 (323)
T ss_dssp -EEEEESS-STTTTHHHHHHHHHHHHH--TTEEEEEEE-HHHHHTT-SS--------------TTEEEEE-SB---TTS-
T ss_pred CEEEEECCCCCcChHHHHHHHHHHHHHC-cCeEEEEEECHHHHHHHHHh-cc-------cccccceEEEecCCeecCCCC
Confidence 455555 44444444444555556554 23467888876655332211 00 000023444433211000011
Q ss_pred hHHHHH-HHHHHHHHHHHhhHhcCCcEEEecCCCcch
Q 027253 123 YVTSVW-TTLLATTHALWLMVKIRPQVVLCNGPGTCI 158 (226)
Q Consensus 123 ~~~~~~-~~l~~~~~a~~il~k~kPdvVi~tGg~vsv 158 (226)
-..++. +- .++.+++..+++.+-|+++|.|.-=++
T Consensus 72 p~~a~r~k~-SSm~~a~~lvk~g~ada~vSaGnTGA~ 107 (323)
T PF02504_consen 72 PAYALRKKK-SSMVVALELVKEGEADAFVSAGNTGAL 107 (323)
T ss_dssp HHHHHHH-T-CHHHHHHHHHHTTS-SEEEESS-HHHH
T ss_pred HHHHhccCC-CcHHHHHHHhhcCCceEEEecCchHHH
Confidence 111111 12 578899999999999999999876443
No 235
>PRK05713 hypothetical protein; Provisional
Probab=40.66 E-value=69 Score=28.41 Aligned_cols=23 Identities=22% Similarity=0.289 Sum_probs=18.3
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~ 71 (226)
++|+|||| +.|++++++.+..++
T Consensus 196 vlIAgGtG--iaP~~s~l~~~~~~~ 218 (312)
T PRK05713 196 WLLAAGTG--LAPLWGILREALRQG 218 (312)
T ss_pred EEEecCcC--hhHHHHHHHHHHhcC
Confidence 45558999 999999999876543
No 236
>PLN02735 carbamoyl-phosphate synthase
Probab=40.65 E-value=62 Score=34.37 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=16.7
Q ss_pred HHhhHhcCCcEEE-ecCCCcchh
Q 027253 138 LWLMVKIRPQVVL-CNGPGTCIP 159 (226)
Q Consensus 138 ~~il~k~kPdvVi-~tGg~vsvP 159 (226)
+.++.+++||.|+ +.|+-+.+.
T Consensus 642 l~i~~~e~~d~Vi~~~Ggq~~l~ 664 (1102)
T PLN02735 642 LNVIDLERPDGIIVQFGGQTPLK 664 (1102)
T ss_pred HHHHHHhCCCEEEECCCchHHHH
Confidence 5678899999999 577765543
No 237
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=40.59 E-value=67 Score=26.66 Aligned_cols=35 Identities=26% Similarity=0.255 Sum_probs=22.5
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATD 83 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d 83 (226)
++|+|||| +.|++++++.+..+.. ....++.+..+
T Consensus 102 vliagG~G--iaP~~~~l~~l~~~~~~~~v~l~~~~r~ 137 (224)
T cd06189 102 ILIAGGTG--FAPIKSILEHLLAQGSKRPIHLYWGART 137 (224)
T ss_pred EEEecCcC--HHHHHHHHHHHHhcCCCCCEEEEEecCC
Confidence 44558888 9999999999865432 22344444433
No 238
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=40.43 E-value=73 Score=27.15 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=22.6
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
-++|++||| +.|++++++++..++.. ..++.+..
T Consensus 101 ~vlIagGtG--IaP~~s~l~~~~~~~~~-v~l~~~~r 134 (246)
T cd06218 101 VLLVGGGIG--IAPLLFLAKQLAERGIK-VTVLLGFR 134 (246)
T ss_pred EEEEecccC--HHHHHHHHHHHHhcCCc-eEEEEEcc
Confidence 345558999 99999999998754333 34444443
No 239
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=40.42 E-value=3e+02 Score=25.32 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=31.2
Q ss_pred CcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCcc-CCcchhhhhhcccCCccEEEeech
Q 027253 146 PQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARV-KRLSLSGLLLYKLCIADQFFVQWP 210 (226)
Q Consensus 146 PdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv-~~~sltgKll~~~~~ad~~~vq~e 210 (226)
-|+|||=.|+..+-=+.| +|+ |.|++=..--. ...=.-.+.+. ..-+..++-|++
T Consensus 253 ADLvIsRaGa~Ti~E~~a------~g~---P~IliP~p~~~~~~Q~~NA~~l~-~~gaa~~i~~~~ 308 (357)
T COG0707 253 ADLVISRAGALTIAELLA------LGV---PAILVPYPPGADGHQEYNAKFLE-KAGAALVIRQSE 308 (357)
T ss_pred ccEEEeCCcccHHHHHHH------hCC---CEEEeCCCCCccchHHHHHHHHH-hCCCEEEecccc
Confidence 799999999988765543 476 88777433100 01111123332 344666677776
No 240
>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]
Probab=40.08 E-value=60 Score=28.56 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
-+++++|+| +.|++++++.+...+..+..++.+..+
T Consensus 113 ~llla~G~G--ITP~lSml~~~~~~~~~~v~l~h~~R~ 148 (266)
T COG1018 113 LLLLAGGIG--ITPFLSMLRTLLDRGPADVVLVHAART 148 (266)
T ss_pred EEEEecccc--HhHHHHHHHHHHHhCCCCEEEEEecCC
Confidence 445559999 999999999987655333555555433
No 241
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=39.90 E-value=20 Score=31.32 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=20.0
Q ss_pred CCeEEEEE--ecChhhHHHHHHHHH
Q 027253 43 QPLSTLIV--LGSGGHTAEMMNLLS 65 (226)
Q Consensus 43 ~~~kiliv--~GtGGH~~p~lal~~ 65 (226)
++.||+++ ||+|+|..++++.+.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G 34 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLH 34 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHcc
Confidence 56899999 899999999998864
No 242
>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=39.87 E-value=64 Score=27.16 Aligned_cols=32 Identities=25% Similarity=0.175 Sum_probs=21.4
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
+++++||| +.|++++++.+..+ ....++.+..
T Consensus 92 vliAgGtG--itP~~sil~~~~~~--~~i~l~~~~r 123 (233)
T cd06220 92 LLIGGGIG--IAPLAPLAERLKKA--ADVTVLLGAR 123 (233)
T ss_pred EEEecCcC--hHHHHHHHHHHHhc--CCEEEEEecC
Confidence 45558888 89999999987654 2234444443
No 243
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=39.79 E-value=2.7e+02 Score=24.75 Aligned_cols=100 Identities=9% Similarity=-0.069 Sum_probs=51.5
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceE-EEEeecCccccch
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQ-FMQIYRSREVGQS 122 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~-~~~i~r~r~~~~~ 122 (226)
|||||+ .+.=|=+--+.-+.+.|++.-.+.++.++.....- ..+ +. .. .++ .+..++.+. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~--~l~---~~----~P-----~vd~vi~~~~~~~--~~ 64 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCR--PLL---SR----MP-----EVNEAIPMPLGHG--AL 64 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhH--HHH---hc----CC-----ccCEEEecccccc--hh
Confidence 688888 66667666666666667665445566666543211 111 11 00 111 222232211 11
Q ss_pred hHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCC
Q 027253 123 YVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGI 172 (226)
Q Consensus 123 ~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi 172 (226)
. +...+.-.+.+++.++|+||-.-+.. -+++++++.|+
T Consensus 65 ~-------~~~~~~l~~~lr~~~yD~vidl~~~~-----~s~~l~~~~~~ 102 (348)
T PRK10916 65 E-------IGERRRLGHSLREKRYDRAYVLPNSF-----KSALVPFFAGI 102 (348)
T ss_pred h-------hHHHHHHHHHHHhcCCCEEEECCCcH-----HHHHHHHHcCC
Confidence 1 12233445678889999999986542 22344566665
No 244
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=39.75 E-value=1.4e+02 Score=29.74 Aligned_cols=32 Identities=25% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCCeEEEEEecChhhHHHHH--HHHHHhhhcCCC
Q 027253 42 PQPLSTLIVLGSGGHTAEMM--NLLSVLQMDRFT 73 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~l--al~~~l~~~~~~ 73 (226)
.++|||+++||+|==+..|+ .+.+.|++++++
T Consensus 504 ~k~mKILvaCGsGiGTStmva~kIkk~Lke~GI~ 537 (602)
T PRK09548 504 GKPVRILAVCGQGQGSSMMMKMKIKKYLDKRGIP 537 (602)
T ss_pred CcccEEEEECCCCchHHHHHHHHHHHHHHHcCCC
Confidence 46799999999987777764 455668877775
No 245
>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional
Probab=39.57 E-value=56 Score=29.84 Aligned_cols=36 Identities=28% Similarity=0.431 Sum_probs=23.0
Q ss_pred eEEE-EEecChhhHHHHHHHHHHhhhcCCC-CeEEEEEcC
Q 027253 45 LSTL-IVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAAT 82 (226)
Q Consensus 45 ~kil-iv~GtGGH~~p~lal~~~l~~~~~~-~~~~~~~~~ 82 (226)
.+++ |+|||| +.|++++++.+..++.. ...++.+..
T Consensus 262 ~~~vlIagGtG--IaP~~s~l~~~~~~~~~~~v~l~~~~r 299 (399)
T PRK13289 262 TPVVLISGGVG--ITPMLSMLETLAAQQPKRPVHFIHAAR 299 (399)
T ss_pred CcEEEEecCcc--HHHHHHHHHHHHhcCCCCCEEEEEEeC
Confidence 3454 448998 99999999998543222 244444543
No 246
>PLN03116 ferredoxin--NADP+ reductase; Provisional
Probab=39.45 E-value=73 Score=28.28 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.4
Q ss_pred EEEEecChhhHHHHHHHHHHhh
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQ 68 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~ 68 (226)
++|+|||| +.|++++++++.
T Consensus 160 vlIAgGtG--IaP~~sml~~~l 179 (307)
T PLN03116 160 IMVATGTG--IAPFRGFLRRMF 179 (307)
T ss_pred EEEecCcc--HHHHHHHHHHHH
Confidence 55558998 999999999764
No 247
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=39.44 E-value=50 Score=31.05 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=19.5
Q ss_pred CCCCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 41 SPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 41 ~~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
++++|||+|+|||| +=+-.|++.|.+++++
T Consensus 117 ~~~~mkILVTGatG---FIGs~Lv~~Ll~~G~~ 146 (436)
T PLN02166 117 GRKRLRIVVTGGAG---FVGSHLVDKLIGRGDE 146 (436)
T ss_pred ccCCCEEEEECCcc---HHHHHHHHHHHHCCCE
Confidence 35679999999986 2333455566555654
No 248
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=38.62 E-value=1.4e+02 Score=26.71 Aligned_cols=36 Identities=31% Similarity=0.358 Sum_probs=23.5
Q ss_pred eEEEEEecCh-hhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
..++|+|+|| |=|.-+-++++.+.+...+.++..+.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiE 169 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE 169 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEEC
Confidence 5678888777 67888888888875432223555444
No 249
>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor. Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.
Probab=38.61 E-value=68 Score=26.53 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=17.6
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
-+++++ |||| +.|++++++++..+
T Consensus 105 ~~~vliagGtG--iaP~~~~l~~~~~~ 129 (234)
T cd06183 105 KHIGMIAGGTG--ITPMLQLIRAILKD 129 (234)
T ss_pred cEEEEEcCCcc--hhHHHHHHHHHHhC
Confidence 345444 7777 89999999997653
No 250
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=38.60 E-value=61 Score=30.30 Aligned_cols=51 Identities=14% Similarity=0.221 Sum_probs=39.2
Q ss_pred HHHHHhhHhcCCcE--EEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhh
Q 027253 135 THALWLMVKIRPQV--VLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLL 196 (226)
Q Consensus 135 ~~a~~il~k~kPdv--Vi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll 196 (226)
+.+..+|++..+|+ ||++-|+..+|--.+ .++..| |+|-++.. |..|.++.
T Consensus 324 ~s~vdlL~~k~vDAalvi~sDp~ah~P~~~~---~~l~eI---PvI~iDp~-----~~pTt~va 376 (429)
T COG1029 324 FSAVDLLKRKEVDAALVIASDPGAHFPRDAV---EHLAEI---PVICIDPH-----PTPTTEVA 376 (429)
T ss_pred ccHHHHHhccCCCeEEEEecCccccChHHHH---HHhhcC---CEEEecCC-----CCcchhhc
Confidence 45567788888886 889999999999866 567788 99999987 44554443
No 251
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=38.57 E-value=48 Score=24.28 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=22.9
Q ss_pred hHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 141 MVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 141 l~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+.+.+||+|+..|.+..- .... .+-.|+ |++..+..
T Consensus 57 l~~l~pDlvi~~~~~~~~---~~~~-l~~~~i---~~~~~~~~ 92 (148)
T cd00636 57 IAALKPDLIIANGSGLEA---WLDK-LSKIAI---PVVVVDEA 92 (148)
T ss_pred HhccCCCEEEEecccchh---HHHH-HHHhCC---CEEEECCC
Confidence 445589999998865431 1112 234566 88888876
No 252
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=38.42 E-value=34 Score=31.66 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=22.7
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
+-++...+++.++|+||+-|||.++=++
T Consensus 67 v~~~~~~~~~~~~D~IIaiGGGS~iD~A 94 (398)
T cd08178 67 VRKGLELMNSFKPDTIIALGGGSPMDAA 94 (398)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccHHHHH
Confidence 4455667788999999999999988665
No 253
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=38.42 E-value=35 Score=31.28 Aligned_cols=29 Identities=17% Similarity=0.237 Sum_probs=24.2
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+.++...+++.++|+||+-|||.++=.+
T Consensus 69 ~v~~~~~~~~~~~~D~IIavGGGSviD~A 97 (375)
T cd08179 69 TVLKGAEAMREFEPDWIIALGGGSPIDAA 97 (375)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccHHHHH
Confidence 44566778888999999999999888666
No 254
>PRK10565 putative carbohydrate kinase; Provisional
Probab=38.37 E-value=85 Score=30.31 Aligned_cols=42 Identities=10% Similarity=0.144 Sum_probs=33.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcch
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMS 86 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s 86 (226)
-+|++++|+|.-=.-++.+|..|..++++..+|.++..+..+
T Consensus 61 ~~v~vl~G~GNNGGDG~v~AR~L~~~G~~V~v~~~~~~~~~~ 102 (508)
T PRK10565 61 RHWLVLCGHGNNGGDGYVVARLAQAAGIDVTLLAQESDKPLP 102 (508)
T ss_pred CeEEEEEcCCCchHHHHHHHHHHHHCCCceEEEEECCcccCC
Confidence 478898999988889999999998888886777666555443
No 255
>PRK07774 short chain dehydrogenase; Provisional
Probab=37.87 E-value=2.3e+02 Score=23.30 Aligned_cols=34 Identities=12% Similarity=0.099 Sum_probs=21.3
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
..+++|+||||| =+.++++.|.++++ .+++++..
T Consensus 6 ~k~vlItGasg~---iG~~la~~l~~~g~--~vi~~~r~ 39 (250)
T PRK07774 6 DKVAIVTGAAGG---IGQAYAEALAREGA--SVVVADIN 39 (250)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCC--EEEEEeCC
Confidence 356788888874 35666677766664 45555543
No 256
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=37.63 E-value=59 Score=30.29 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=29.1
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
...+++..-..||..++..+++.|.+++++ .++++..
T Consensus 6 ~~~il~~~p~~sH~~~~~~la~~L~~~gh~-vt~~~~~ 42 (496)
T KOG1192|consen 6 AHNILVPFPGQSHLNPMLQLAKRLAERGHN-VTVVTPS 42 (496)
T ss_pred ceeEEEECCcccHHHHHHHHHHHHHHcCCc-eEEEEee
Confidence 456677766999999999999999998876 5555543
No 257
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=37.48 E-value=35 Score=30.66 Aligned_cols=29 Identities=17% Similarity=0.439 Sum_probs=23.8
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++....+++++|+||+-|||.++=++
T Consensus 66 ~v~~~~~~~~~~~~d~IiaiGGGs~~D~a 94 (332)
T cd08180 66 VVAKGIKKFLDFKPDIVIALGGGSAIDAA 94 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCchHHHHH
Confidence 45566777888999999999999887655
No 258
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=37.39 E-value=83 Score=28.89 Aligned_cols=20 Identities=30% Similarity=0.469 Sum_probs=15.0
Q ss_pred HHHHHHHHhhHhcCCcEEEe
Q 027253 132 LATTHALWLMVKIRPQVVLC 151 (226)
Q Consensus 132 ~~~~~a~~il~k~kPdvVi~ 151 (226)
.++..+++--.|+.||+|+-
T Consensus 185 ~sF~~aLraALReDPDVIlv 204 (353)
T COG2805 185 LSFANALRAALREDPDVILV 204 (353)
T ss_pred HHHHHHHHHHhhcCCCEEEE
Confidence 35566777778899999874
No 259
>PTZ00274 cytochrome b5 reductase; Provisional
Probab=37.29 E-value=77 Score=28.71 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=17.6
Q ss_pred eEE-EEEecChhhHHHHHHHHHHhhh
Q 027253 45 LST-LIVLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 45 ~ki-liv~GtGGH~~p~lal~~~l~~ 69 (226)
.++ +|+|||| ++|++++++++..
T Consensus 160 ~~lvlIAGGsG--ITP~lsmlr~~l~ 183 (325)
T PTZ00274 160 KHVGMIAGGTG--FTPMLQIIRHSLT 183 (325)
T ss_pred ceEEEEeCCcc--hhHHHHHHHHHHh
Confidence 355 4559999 9999999997543
No 260
>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins. Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity
Probab=37.26 E-value=93 Score=26.04 Aligned_cols=22 Identities=18% Similarity=0.354 Sum_probs=17.1
Q ss_pred EEE-EEecChhhHHHHHHHHHHhhh
Q 027253 46 STL-IVLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 46 kil-iv~GtGGH~~p~lal~~~l~~ 69 (226)
+++ |+||+| +.|++++++.+..
T Consensus 127 ~illIagG~G--ItP~~sil~~l~~ 149 (220)
T cd06197 127 KMVWIAGGVG--ITPFLAMLRAILS 149 (220)
T ss_pred eEEEEecccc--hhhHHHHHHHHHh
Confidence 444 448888 9999999998764
No 261
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=37.19 E-value=83 Score=21.43 Aligned_cols=31 Identities=16% Similarity=0.286 Sum_probs=14.5
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 027253 1 MNKMDDFYFYIMTIIATSVAIFLIRLLHVLY 31 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 31 (226)
||--|.-|.++++.+++++.+...-+++.+.
T Consensus 1 M~i~~~Iy~~~Vi~l~vl~~~~Ftl~IRri~ 31 (58)
T PF13314_consen 1 MNIGDLIYYILVIILIVLFGASFTLFIRRIL 31 (58)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555455555444444443444333
No 262
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=37.18 E-value=2.9e+02 Score=24.37 Aligned_cols=59 Identities=10% Similarity=0.099 Sum_probs=30.9
Q ss_pred cCccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHH-HHHcCCccce
Q 027253 115 RSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFL-FKVIGIRWSS 176 (226)
Q Consensus 115 r~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~l-akllgi~~~~ 176 (226)
.+|+.+++-.--.-+-..-+.+-.+.+.+..||.++-+-+. |+=+.+.+ .+..|+++.+
T Consensus 78 ~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN---P~d~~~~~~~~~~g~p~~~ 137 (306)
T cd05291 78 APQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN---PVDVITYVVQKLSGLPKNR 137 (306)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC---hHHHHHHHHHHHhCcCHHH
Confidence 44444443322222333344455566778889998888777 44333332 4555554333
No 263
>PLN00164 glucosyltransferase; Provisional
Probab=37.14 E-value=48 Score=31.69 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=22.6
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~ 71 (226)
.||+++ .=.=||+.||+.+|+.|..++
T Consensus 4 ~HVVlvPfpaqGHi~P~l~LAk~La~~g 31 (480)
T PLN00164 4 PTVVLLPVWGSGHLMSMLEAGKRLLASS 31 (480)
T ss_pred CEEEEeCCcchhHHHHHHHHHHHHHhCC
Confidence 488888 656799999999999997664
No 264
>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional
Probab=36.75 E-value=73 Score=28.50 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=23.0
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCCc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATDN 84 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d~ 84 (226)
++|+|||| +.|++++++++...+. ....++.+..+.
T Consensus 115 vliAgG~G--ItP~~sml~~~~~~~~~~~v~l~y~~r~~ 151 (332)
T PRK10684 115 LLLAAGCG--VTPIMSMRRWLLKNRPQADVQVIFNVRTP 151 (332)
T ss_pred EEEecCcC--cchHHHHHHHHHhcCCCCCEEEEEeCCCh
Confidence 45558998 9999999998754432 224444454433
No 265
>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=36.61 E-value=72 Score=26.23 Aligned_cols=35 Identities=20% Similarity=0.217 Sum_probs=22.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATD 83 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d 83 (226)
++|++||| +.|++++++.+...+. ....++.+..+
T Consensus 103 vlia~GtG--iaP~~s~l~~~~~~~~~~~v~l~~~~r~ 138 (218)
T cd06196 103 VFIAGGAG--ITPFIAILRDLAAKGKLEGNTLIFANKT 138 (218)
T ss_pred EEEecCCC--cChHHHHHHHHHhCCCCceEEEEEecCC
Confidence 55568998 8999999999765432 22344445443
No 266
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=36.55 E-value=2.2e+02 Score=24.21 Aligned_cols=25 Identities=16% Similarity=0.064 Sum_probs=16.1
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|++|+||||+ -+.++++.|.+++++
T Consensus 1 kvlV~GatG~---iG~~l~~~l~~~g~~ 25 (328)
T TIGR01179 1 KILVTGGAGY---IGSHTVRQLLESGHE 25 (328)
T ss_pred CEEEeCCCCH---HHHHHHHHHHhCCCe
Confidence 5788888883 344556666666654
No 267
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=36.47 E-value=2.5e+02 Score=23.94 Aligned_cols=39 Identities=21% Similarity=0.237 Sum_probs=26.9
Q ss_pred eEEEEEecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 45 LSTLIVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 45 ~kiliv~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
.-++++|+|| |=+.-+.++++.+... ..++..+.+..++
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred eEEEEECCCccccchHHHHHhhhcccc--ccceEEeccccce
Confidence 6677778777 7788888998888764 2366666655443
No 268
>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase. PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and
Probab=36.23 E-value=94 Score=25.93 Aligned_cols=25 Identities=16% Similarity=0.305 Sum_probs=19.1
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
..+++++ +||| +.|++++++++.+.
T Consensus 108 ~~~~llia~GtG--iap~~~~~~~~~~~ 133 (241)
T cd06214 108 ARHYVLFAAGSG--ITPVLSILKTALAR 133 (241)
T ss_pred CCcEEEEecccC--hhhHHHHHHHHHhc
Confidence 4566555 8999 89999999987654
No 269
>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional
Probab=36.23 E-value=88 Score=27.49 Aligned_cols=37 Identities=24% Similarity=0.188 Sum_probs=22.5
Q ss_pred EEE-EEecChhhHHHHHHHHHHhhhcC--CCCeEEEEEcCCc
Q 027253 46 STL-IVLGSGGHTAEMMNLLSVLQMDR--FTPRFYIAAATDN 84 (226)
Q Consensus 46 kil-iv~GtGGH~~p~lal~~~l~~~~--~~~~~~~~~~~d~ 84 (226)
+++ |+|||| +.|++++++++...+ ..+..++.+..+.
T Consensus 110 ~~llIAgGtG--IaP~~s~l~~~l~~~~~~~~v~l~~~~r~~ 149 (289)
T PRK08345 110 DLLLIAGGLG--MAPLRSVLLYAMDNRWKYGNITLIYGAKYY 149 (289)
T ss_pred eEEEEecccc--hhHHHHHHHHHHhcCCCCCcEEEEEecCCH
Confidence 454 448997 999999999754433 1234444454443
No 270
>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=36.15 E-value=91 Score=25.65 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=18.9
Q ss_pred eEEEE-EecChhhHHHHHHHHHHhhhcC
Q 027253 45 LSTLI-VLGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 45 ~kili-v~GtGGH~~p~lal~~~l~~~~ 71 (226)
.++++ ++||| +.|++++++.+...+
T Consensus 99 ~~~lliagG~G--I~p~~sll~~~~~~~ 124 (224)
T cd06187 99 RPVLCIAGGTG--LAPLRAIVEDALRRG 124 (224)
T ss_pred CCEEEEecCcC--HHHHHHHHHHHHhcC
Confidence 34554 48887 999999999987643
No 271
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=35.98 E-value=2.4e+02 Score=25.55 Aligned_cols=26 Identities=15% Similarity=-0.052 Sum_probs=14.5
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRF 72 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~ 72 (226)
.-.++|+||++|= +.+++.++.+++.
T Consensus 38 g~~vLITGgg~Gl---Gr~ialefa~rg~ 63 (300)
T KOG1201|consen 38 GEIVLITGGGSGL---GRLIALEFAKRGA 63 (300)
T ss_pred CCEEEEeCCCchH---HHHHHHHHHHhCC
Confidence 3566777665552 3345556666654
No 272
>PRK08177 short chain dehydrogenase; Provisional
Probab=35.43 E-value=2.5e+02 Score=22.93 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=20.3
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
+++++||||| -+.++++.|.++++ .++.++.+
T Consensus 3 ~vlItG~sg~---iG~~la~~l~~~G~--~V~~~~r~ 34 (225)
T PRK08177 3 TALIIGASRG---LGLGLVDRLLERGW--QVTATVRG 34 (225)
T ss_pred EEEEeCCCch---HHHHHHHHHHhCCC--EEEEEeCC
Confidence 4677788874 45556777776665 35555543
No 273
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=35.41 E-value=2.2e+02 Score=22.26 Aligned_cols=128 Identities=12% Similarity=0.080 Sum_probs=56.9
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhh-cc-------c-CCcceEEEEee-
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHK-KV-------I-KGSSAQFMQIY- 114 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~-~~-------~-~~~~~~~~~i~- 114 (226)
|||+|+|. +||+...++.. |...+...++.++...+..-...+.+++.-.... .. + ...+.++.-+.
T Consensus 1 ~KV~IiGa-~G~VG~~~a~~--l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvita 77 (141)
T PF00056_consen 1 MKVAIIGA-AGNVGSTLALL--LAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITA 77 (141)
T ss_dssp SEEEEEST-TSHHHHHHHHH--HHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETT
T ss_pred CEEEEECC-CChHHHHHHHH--HHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEec
Confidence 67777743 45665555543 2223444567776655333333333333221110 00 0 01233333332
Q ss_pred -cCccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceE
Q 027253 115 -RSREVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI 177 (226)
Q Consensus 115 -r~r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i 177 (226)
.+|+.+++...-.-.-..-+.+-.+-+.+..||.++..-...+=. ++..+.+..+.++.++
T Consensus 78 g~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPvd~--~t~~~~~~s~~~~~kv 139 (141)
T PF00056_consen 78 GVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPVDV--MTYVAQKYSGFPPNKV 139 (141)
T ss_dssp STSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSHHH--HHHHHHHHHTSSGGGE
T ss_pred cccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcHHH--HHHHHHHhhCcCcccC
Confidence 334444443333333344445555667778888665555442221 2222355556544444
No 274
>PRK06988 putative formyltransferase; Provisional
Probab=35.40 E-value=1.8e+02 Score=26.02 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=17.2
Q ss_pred HHhhHhcCCcEEEecCCCcchhHH
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
...+++.+||++|+.+=+-=+|--
T Consensus 70 ~~~l~~~~~Dliv~~~~~~iip~~ 93 (312)
T PRK06988 70 RAAVAAAAPDFIFSFYYRHMIPVD 93 (312)
T ss_pred HHHHHhcCCCEEEEehhccccCHH
Confidence 345778899999988865555544
No 275
>TIGR02911 sulfite_red_B sulfite reductase, subunit B. Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.
Probab=35.12 E-value=88 Score=27.02 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=18.0
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
-+++++ +||| +.|++++++++..+
T Consensus 100 ~~~llIAgGtG--IaP~~sil~~l~~~ 124 (261)
T TIGR02911 100 KELVVVAGGTG--VAPVKGVVEYFVKN 124 (261)
T ss_pred ceEEEEecccC--cHHHHHHHHHHHhC
Confidence 355544 8888 89999999987543
No 276
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=35.09 E-value=29 Score=32.62 Aligned_cols=33 Identities=15% Similarity=0.001 Sum_probs=19.1
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
||++.-.++.|...|..++++|.++|++ +++++
T Consensus 2 kvLv~p~~~SH~~~~~~l~~~L~~rGH~-VTvl~ 34 (500)
T PF00201_consen 2 KVLVFPMAYSHFIFMRPLAEELAERGHN-VTVLT 34 (500)
T ss_dssp ----------SHHHHHHHHHHHHHH-TT-SEEEH
T ss_pred EEEEeCCCcCHHHHHHHHHHHHHhcCCc-eEEEE
Confidence 6777766889999999999999999987 56654
No 277
>PRK06756 flavodoxin; Provisional
Probab=35.00 E-value=67 Score=24.97 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=22.8
Q ss_pred eEEEEE-ecChhhHHHH-HHHHHHhhhcCCC
Q 027253 45 LSTLIV-LGSGGHTAEM-MNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~-lal~~~l~~~~~~ 73 (226)
||++|+ ++.-|||..+ -++++.+++.+.+
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~ 32 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENE 32 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCe
Confidence 689999 8889999986 6677888766554
No 278
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=34.75 E-value=65 Score=25.77 Aligned_cols=39 Identities=23% Similarity=0.440 Sum_probs=24.2
Q ss_pred HHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
+-.+.+.+||+||+.+.... +-... . ..-.|| |+++++.
T Consensus 62 ~E~ll~l~PDlii~~~~~~~-~~~~~-~-l~~~gI---pvv~i~~ 100 (186)
T cd01141 62 VELIVALKPDLVILYGGFQA-QTILD-K-LEQLGI---PVLYVNE 100 (186)
T ss_pred HHHHhccCCCEEEEecCCCc-hhHHH-H-HHHcCC---CEEEeCC
Confidence 34566789999998654322 11211 1 244788 9999975
No 279
>PRK07478 short chain dehydrogenase; Provisional
Probab=34.60 E-value=2.7e+02 Score=23.10 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=19.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||||| + +.++++.|.++++ .+++++.
T Consensus 7 k~~lItGas~g-i--G~~ia~~l~~~G~--~v~~~~r 38 (254)
T PRK07478 7 KVAIITGASSG-I--GRAAAKLFAREGA--KVVVGAR 38 (254)
T ss_pred CEEEEeCCCCh-H--HHHHHHHHHHCCC--EEEEEeC
Confidence 35666677765 3 3445667766665 3555554
No 280
>PRK09186 flagellin modification protein A; Provisional
Probab=34.47 E-value=54 Score=27.28 Aligned_cols=27 Identities=15% Similarity=-0.070 Sum_probs=18.8
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
..+++|+||||| -+.++++.|.+++++
T Consensus 4 ~k~vlItGas~g---iG~~~a~~l~~~g~~ 30 (256)
T PRK09186 4 GKTILITGAGGL---IGSALVKAILEAGGI 30 (256)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCCE
Confidence 357788888876 556667777777654
No 281
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=34.40 E-value=2.1e+02 Score=24.61 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=17.4
Q ss_pred CeEEEEE--ecChhhHHHHHHHH
Q 027253 44 PLSTLIV--LGSGGHTAEMMNLL 64 (226)
Q Consensus 44 ~~kiliv--~GtGGH~~p~lal~ 64 (226)
..||+++ ||.|+++.++|+.+
T Consensus 11 ~~~VlVvG~GGvGs~va~~Lar~ 33 (231)
T cd00755 11 NAHVAVVGLGGVGSWAAEALARS 33 (231)
T ss_pred CCCEEEECCCHHHHHHHHHHHHc
Confidence 4689999 78999999988764
No 282
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=34.40 E-value=1.3e+02 Score=25.03 Aligned_cols=37 Identities=3% Similarity=0.020 Sum_probs=26.0
Q ss_pred HhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 142 VKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 142 ~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
...++|+|++.... ++.+|+.+|..+++ |.++++-..
T Consensus 47 ~~~~~d~Vv~~ea~---Gi~la~~lA~~Lg~---p~v~vRK~~ 83 (191)
T TIGR01744 47 ADDGITKIVTIEAS---GIAPAIMTGLKLGV---PVVFARKKK 83 (191)
T ss_pred ccCCCCEEEEEccc---cHHHHHHHHHHHCC---CEEEEEeCC
Confidence 35579999875544 33455556888898 888887664
No 283
>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases. Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.
Probab=34.39 E-value=92 Score=26.66 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=18.7
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
-+++++ +||| +.|++++++++..+
T Consensus 99 ~~iv~IA~G~G--itP~ls~l~~~~~~ 123 (253)
T cd06221 99 KDLLLVAGGLG--LAPLRSLINYILDN 123 (253)
T ss_pred CeEEEEccccc--hhHHHHHHHHHHhc
Confidence 455555 8888 99999999987654
No 284
>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain. FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in
Probab=34.29 E-value=1.1e+02 Score=25.50 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=23.1
Q ss_pred eEEEE-EecChhhHHHHHHHHHHhhhcCC-CCeEEEEEcCCc
Q 027253 45 LSTLI-VLGSGGHTAEMMNLLSVLQMDRF-TPRFYIAAATDN 84 (226)
Q Consensus 45 ~kili-v~GtGGH~~p~lal~~~l~~~~~-~~~~~~~~~~d~ 84 (226)
-++++ +|||| +.|++++++.+..... ....++.+..+.
T Consensus 103 ~~~lliagG~G--itp~~s~~~~~~~~~~~~~v~l~~~~r~~ 142 (231)
T cd06191 103 GRYLLVAAGSG--ITPLMAMIRATLQTAPESDFTLIHSARTP 142 (231)
T ss_pred CcEEEEecCcc--HhHHHHHHHHHHhcCCCCCEEEEEecCCH
Confidence 34554 48998 7899999998754321 223444454443
No 285
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.24 E-value=2.7e+02 Score=23.12 Aligned_cols=30 Identities=10% Similarity=0.000 Sum_probs=17.7
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
+++|+||||| =+.++++.|.++++. +..++
T Consensus 3 ~vlItGasg~---iG~~la~~l~~~G~~--V~~~~ 32 (260)
T PRK08267 3 SIFITGAASG---IGRATALLFAAEGWR--VGAYD 32 (260)
T ss_pred EEEEeCCCch---HHHHHHHHHHHCCCe--EEEEe
Confidence 4667788873 345566666666653 44443
No 286
>PRK00654 glgA glycogen synthase; Provisional
Probab=34.15 E-value=3.9e+02 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.082 Sum_probs=26.6
Q ss_pred eEEEEEe-------cChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLIVL-------GSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv~-------GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
|||+++. .+||.-.-.-+|+++|.+.+++ ...++..-+
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~-V~v~~p~y~ 45 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHD-VRVLLPGYP 45 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCc-EEEEecCCc
Confidence 5666552 2799988899999999988876 444444433
No 287
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=34.10 E-value=3.9e+02 Score=24.83 Aligned_cols=32 Identities=19% Similarity=0.299 Sum_probs=22.5
Q ss_pred HHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEE
Q 027253 136 HALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIF 178 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv 178 (226)
+-...+++.+||++|++.... .+|+-+|+ |.+
T Consensus 362 el~~~i~~~~pdliig~~~~~--------~~a~~~~i---p~i 393 (428)
T cd01965 362 DLESLAKEEPVDLLIGNSHGR--------YLARDLGI---PLV 393 (428)
T ss_pred HHHHHhhccCCCEEEECchhH--------HHHHhcCC---CEE
Confidence 334567788999999988662 22466787 765
No 288
>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.
Probab=33.95 E-value=82 Score=26.17 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=18.3
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~ 71 (226)
++|+|||| +.|++++++++.+.+
T Consensus 104 lliagG~G--iaP~~~~~~~~~~~~ 126 (227)
T cd06213 104 LCIAGGSG--LAPILAILEQARAAG 126 (227)
T ss_pred EEEecccc--hhHHHHHHHHHHhcC
Confidence 55558998 899999999986544
No 289
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=33.90 E-value=41 Score=30.92 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=23.1
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-.+....+..++|+||+-|||.++=.+
T Consensus 74 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~a 102 (382)
T cd08187 74 TVREGIELCKEEKVDFILAVGGGSVIDSA 102 (382)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHH
Confidence 34456667788999999999999887665
No 290
>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system. Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.
Probab=33.88 E-value=1.1e+02 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=18.4
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
-+++++ |||| +.|++++++++...
T Consensus 98 ~~illIagG~G--iaP~~~~l~~~~~~ 122 (232)
T cd06190 98 RDIVCIAGGSG--LAPMLSILRGAARS 122 (232)
T ss_pred CcEEEEeeCcC--HHHHHHHHHHHHhc
Confidence 455555 8888 89999999987653
No 291
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=33.64 E-value=77 Score=28.94 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHhhHhcCCcE-EEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 135 THALWLMVKIRPQV-VLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 135 ~~a~~il~k~kPdv-Vi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
...+.-+++..||. +..||- |+-..+|++++.-+|+ |+|-.||-.
T Consensus 263 ldI~~~v~~~Ypda~iwlTGH--SLGGa~AsLlG~~fgl---P~VaFesPG 308 (425)
T COG5153 263 LDILGAVRRIYPDARIWLTGH--SLGGAIASLLGIRFGL---PVVAFESPG 308 (425)
T ss_pred HHHHHHHHHhCCCceEEEecc--ccchHHHHHhccccCC---ceEEecCch
Confidence 34445567888998 555653 4555678888888898 999999976
No 292
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=33.64 E-value=77 Score=28.94 Aligned_cols=45 Identities=18% Similarity=0.225 Sum_probs=32.9
Q ss_pred HHHHHhhHhcCCcE-EEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 135 THALWLMVKIRPQV-VLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 135 ~~a~~il~k~kPdv-Vi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
...+.-+++..||. +..||- |+-..+|++++.-+|+ |+|-.||-.
T Consensus 263 ldI~~~v~~~Ypda~iwlTGH--SLGGa~AsLlG~~fgl---P~VaFesPG 308 (425)
T KOG4540|consen 263 LDILGAVRRIYPDARIWLTGH--SLGGAIASLLGIRFGL---PVVAFESPG 308 (425)
T ss_pred HHHHHHHHHhCCCceEEEecc--ccchHHHHHhccccCC---ceEEecCch
Confidence 34445567888998 555653 4555678888888898 999999976
No 293
>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.
Probab=33.49 E-value=1.1e+02 Score=25.46 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=17.4
Q ss_pred EEEEecChhhHHHHHHHHHHhhhc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~ 70 (226)
++|++||| +.|++++++++...
T Consensus 106 vlia~GtG--IaP~~~ll~~~~~~ 127 (228)
T cd06209 106 LMLAGGTG--LAPFLSMLDVLAED 127 (228)
T ss_pred EEEEcccC--HhHHHHHHHHHHhc
Confidence 44558888 99999999987654
No 294
>PRK06395 phosphoribosylamine--glycine ligase; Provisional
Probab=33.29 E-value=3.8e+02 Score=25.17 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=13.2
Q ss_pred HHhhHhcCCcEEEecCCCc
Q 027253 138 LWLMVKIRPQVVLCNGPGT 156 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~v 156 (226)
+.+.+++++|+||. |+-.
T Consensus 58 ~~~~~~~~id~Vi~-~~d~ 75 (435)
T PRK06395 58 EDFALKNNVDIVFV-GPDP 75 (435)
T ss_pred HHHHHHhCCCEEEE-CCCh
Confidence 45677889999997 4543
No 295
>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol. This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.
Probab=33.26 E-value=97 Score=25.81 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.3
Q ss_pred EEEEecChhhHHHHHHHHHHhhhc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~ 70 (226)
++|+|||| +.|++++++++...
T Consensus 112 vliagGtG--iaP~~~~l~~~~~~ 133 (236)
T cd06210 112 WFVAGGTG--LAPLLSMLRRMAEW 133 (236)
T ss_pred EEEccCcc--hhHHHHHHHHHHhc
Confidence 45558886 99999999997653
No 296
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=33.25 E-value=49 Score=25.38 Aligned_cols=35 Identities=11% Similarity=0.085 Sum_probs=23.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
||+++.-..+++...+..+++.|++++++ +.++-+
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~g~~--v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRAGWE--VRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTTTSE--EEEEES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhCCCE--EEEEEC
Confidence 57777733345566699999999987655 555544
No 297
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=33.14 E-value=76 Score=26.70 Aligned_cols=41 Identities=20% Similarity=0.179 Sum_probs=25.3
Q ss_pred HHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+..|...+||+||+.+....- -... .+.+..|+ |++.+++.
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~-~~~~-~l~~~~gi---pvv~~~~~ 107 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPT-SIAD-DLQKKTGI---PVVVLDGG 107 (262)
T ss_pred HHHHHhcCCCEEEEecCCccc-hhHH-HHHHhhCC---CEEEEecC
Confidence 345667789999998665331 0111 22344788 99888765
No 298
>PRK09271 flavodoxin; Provisional
Probab=33.12 E-value=79 Score=25.18 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.0
Q ss_pred eEEEEE-ecChhhHHHH-HHHHHHhhhcCCC
Q 027253 45 LSTLIV-LGSGGHTAEM-MNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~-lal~~~l~~~~~~ 73 (226)
||++|+ ++.-|++..+ -+|++.++..+.+
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~ 31 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHE 31 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCe
Confidence 789998 8888998885 6677888877665
No 299
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=33.09 E-value=21 Score=32.34 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=16.9
Q ss_pred EEE-ecChhhHHHHHHHHHHhhh
Q 027253 48 LIV-LGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 48 liv-~GtGGH~~p~lal~~~l~~ 69 (226)
.++ .=||||++||..++...-.
T Consensus 82 yvag~iSGgHlNPAVS~a~~~~g 104 (316)
T KOG0224|consen 82 YVAGRISGGHLNPAVSLAMCILG 104 (316)
T ss_pred HhhccccccccCHHHHHHHHHhc
Confidence 444 3489999999999987544
No 300
>PRK06197 short chain dehydrogenase; Provisional
Probab=32.84 E-value=3.2e+02 Score=23.55 Aligned_cols=33 Identities=9% Similarity=0.003 Sum_probs=20.6
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||||| =+.++++.|.+++++ +.+++.
T Consensus 16 ~k~vlItGas~g---IG~~~a~~l~~~G~~--vi~~~r 48 (306)
T PRK06197 16 GRVAVVTGANTG---LGYETAAALAAKGAH--VVLAVR 48 (306)
T ss_pred CCEEEEcCCCCc---HHHHHHHHHHHCCCE--EEEEeC
Confidence 456777788875 355666777766653 445443
No 301
>PRK05854 short chain dehydrogenase; Provisional
Probab=32.83 E-value=3.4e+02 Score=23.77 Aligned_cols=35 Identities=11% Similarity=0.066 Sum_probs=22.4
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
+..+++|+||||| =+.++++.|.++++ .+++++.+
T Consensus 13 ~gk~~lITGas~G---IG~~~a~~La~~G~--~Vil~~R~ 47 (313)
T PRK05854 13 SGKRAVVTGASDG---LGLGLARRLAAAGA--EVILPVRN 47 (313)
T ss_pred CCCEEEEeCCCCh---HHHHHHHHHHHCCC--EEEEEeCC
Confidence 3456667788875 35677778877764 45555543
No 302
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=32.81 E-value=3.9e+02 Score=24.44 Aligned_cols=46 Identities=11% Similarity=0.150 Sum_probs=28.7
Q ss_pred HHHHHHhhHhcCCc---EEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 134 TTHALWLMVKIRPQ---VVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 134 ~~~a~~il~k~kPd---vVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
+-+....+++.++| +||+-|||+..=++=++-.....|+ |++.+=+
T Consensus 70 v~~~~~~~~~~~~dr~~~IIAvGGGsv~D~ak~~A~~~~rgi---p~I~IPT 118 (355)
T cd08197 70 LSDLVERALALGATRRSVIVALGGGVVGNIAGLLAALLFRGI---RLVHIPT 118 (355)
T ss_pred HHHHHHHHHHcCCCCCcEEEEECCcHHHHHHHHHHHHhccCC---CEEEecC
Confidence 33445566777787 9999999988865522101122466 7776654
No 303
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=32.80 E-value=56 Score=25.28 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=22.5
Q ss_pred eEEEEE-ecChhhHHHH-HHHHHHhhhcCCC
Q 027253 45 LSTLIV-LGSGGHTAEM-MNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~-lal~~~l~~~~~~ 73 (226)
||++|+ ++.-||+..+ -+|++.+..++.+
T Consensus 1 M~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~ 31 (140)
T TIGR01754 1 MRILLAYLSLSGNTEEVAFMIQDYLQKDGHE 31 (140)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhhCCee
Confidence 688888 8899999984 6677888766544
No 304
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=32.72 E-value=1.1e+02 Score=25.88 Aligned_cols=46 Identities=22% Similarity=0.256 Sum_probs=27.9
Q ss_pred HHHHhh-HhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 136 HALWLM-VKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 136 ~a~~il-~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
.|.++. ..++||+||+-+.|=-+|.- +++..+|++.--.+-+|.+.
T Consensus 19 lA~kI~~s~~~PDvIiaiaRGG~~par---iLsd~L~~~~l~~i~v~~y~ 65 (192)
T COG2236 19 LAEKIRASGFKPDVIVAIARGGLIPAR---ILSDFLGVKPLYSIKVEHYD 65 (192)
T ss_pred HHHHHHHcCCCCCEEEEEcCCceehHH---HHHHHhCCCceEEEEEEEeh
Confidence 344554 35899999988777666665 45677777322233344443
No 305
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=32.71 E-value=19 Score=29.32 Aligned_cols=50 Identities=18% Similarity=0.135 Sum_probs=34.8
Q ss_pred cEEEecCCCcchhHHHHHHH-HHHcCCccceEEEEccCCccCCcchhhhhh
Q 027253 147 QVVLCNGPGTCIPLCVIAFL-FKVIGIRWSSIFYVESIARVKRLSLSGLLL 196 (226)
Q Consensus 147 dvVi~tGg~vsvP~~lAa~l-akllgi~~~~iv~~Esnarv~~~sltgKll 196 (226)
..|||-+=|+.+|+++++.+ .-++-+++++.=+++|+..|.+.-.+||+-
T Consensus 49 nIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidSdGkvvtay~~n~~~ 99 (154)
T PF04478_consen 49 NIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDSDGKVVTAYRSNKLT 99 (154)
T ss_pred cEEEEEEecccHHHHHHHHHhheeEEEecccCccccCCCcEEEEEcCchHH
Confidence 57788888888888766322 222334555677999999888888887664
No 306
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=32.64 E-value=3.4e+02 Score=23.79 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=27.6
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCCc
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIAR 185 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esnar 185 (226)
.||+||-..+.---..+.= |..+|| |+ -++++|+.
T Consensus 157 ~Pd~iii~d~~~~~~ai~E---a~kl~I---PiIaivDTn~d 192 (258)
T PRK05299 157 LPDALFVVDPNKEHIAVKE---ARKLGI---PVVAIVDTNCD 192 (258)
T ss_pred CCCEEEEeCCCccHHHHHH---HHHhCC---CEEEEeeCCCC
Confidence 5999999999987655533 688999 66 47889985
No 307
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=32.52 E-value=91 Score=23.55 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=18.9
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+++++|||||.- .++++.|.+++.. .+++++.
T Consensus 2 ~~li~Ga~~~iG---~~~~~~l~~~g~~-~v~~~~r 33 (180)
T smart00822 2 TYLITGGLGGLG---LELARWLAERGAR-HLVLLSR 33 (180)
T ss_pred EEEEEcCCChHH---HHHHHHHHHhhCC-eEEEEeC
Confidence 467779888754 4555566555543 3455444
No 308
>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for
Probab=32.48 E-value=1.3e+02 Score=25.22 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=17.8
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
-+++++ |||| +.|++++++++...
T Consensus 123 ~~~v~iagG~G--iap~~s~l~~~~~~ 147 (243)
T cd06216 123 PRLLLIAAGSG--ITPVMSMLRTLLAR 147 (243)
T ss_pred CCEEEEecCcc--HhHHHHHHHHHHhc
Confidence 455444 7775 99999999998654
No 309
>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e
Probab=32.38 E-value=87 Score=25.84 Aligned_cols=24 Identities=17% Similarity=0.178 Sum_probs=17.5
Q ss_pred eEEE-EEecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTL-IVLGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kil-iv~GtGGH~~p~lal~~~l~~~ 70 (226)
.+++ ++|||| +.|++++++++...
T Consensus 98 ~~~v~iagG~G--iap~~~~l~~~~~~ 122 (222)
T cd06194 98 GPLLLVGAGTG--LAPLWGIARAALRQ 122 (222)
T ss_pred CCEEEEecCcc--hhhHHHHHHHHHhc
Confidence 3444 447887 89999999987543
No 310
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=32.33 E-value=2.6e+02 Score=24.93 Aligned_cols=23 Identities=13% Similarity=0.265 Sum_probs=16.6
Q ss_pred HhhHhcCCcEEEecCCCcchhHH
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
..+++.+||++++.|=+-=+|--
T Consensus 72 ~~l~~~~~Dliv~~~~~~iip~~ 94 (309)
T PRK00005 72 AELAALNADVIVVVAYGQILPKA 94 (309)
T ss_pred HHHHhcCcCEEEEehhhcccCHH
Confidence 34667899999998766556644
No 311
>PRK05650 short chain dehydrogenase; Provisional
Probab=32.27 E-value=3.1e+02 Score=23.08 Aligned_cols=31 Identities=10% Similarity=0.048 Sum_probs=19.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
++++|+||||| =+.+++++|.+++++ +.+++
T Consensus 1 ~~vlVtGasgg---IG~~la~~l~~~g~~--V~~~~ 31 (270)
T PRK05650 1 NRVMITGAASG---LGRAIALRWAREGWR--LALAD 31 (270)
T ss_pred CEEEEecCCCh---HHHHHHHHHHHCCCE--EEEEe
Confidence 36788888874 345566677766654 44444
No 312
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=32.25 E-value=71 Score=29.36 Aligned_cols=29 Identities=17% Similarity=0.212 Sum_probs=20.2
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.+.++++|+||||+ -+..++++|.+++++
T Consensus 58 ~~~~kVLVtGatG~---IG~~l~~~Ll~~G~~ 86 (390)
T PLN02657 58 PKDVTVLVVGATGY---IGKFVVRELVRRGYN 86 (390)
T ss_pred CCCCEEEEECCCcH---HHHHHHHHHHHCCCE
Confidence 45789999999884 345566666666654
No 313
>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons. These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.
Probab=32.11 E-value=87 Score=26.07 Aligned_cols=35 Identities=23% Similarity=0.352 Sum_probs=22.7
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCC-CeEEEEEc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAA 81 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~-~~~~~~~~ 81 (226)
.+++++ |||| +.|++++++++...+.. ...++.+.
T Consensus 104 ~~~l~iagG~G--iap~~~~l~~~~~~~~~~~v~l~~~~ 140 (232)
T cd06212 104 RPIVLIGGGSG--MAPLLSLLRDMAASGSDRPVRFFYGA 140 (232)
T ss_pred CcEEEEecCcc--hhHHHHHHHHHHhcCCCCcEEEEEec
Confidence 455544 8998 89999999998754322 23444444
No 314
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=32.04 E-value=1.4e+02 Score=24.83 Aligned_cols=37 Identities=8% Similarity=0.092 Sum_probs=25.3
Q ss_pred HhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 142 VKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 142 ~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
.+.++|+|+|.-.. ++|+ |..+|..+|+ |.++++...
T Consensus 47 ~~~~~D~Ivg~e~~-Gipl--A~~lA~~Lg~---p~v~vRK~~ 83 (189)
T PRK09219 47 KDEGITKILTIEAS-GIAP--AVMAALALGV---PVVFAKKKK 83 (189)
T ss_pred ccCCCCEEEEEccc-cHHH--HHHHHHHHCC---CEEEEEECC
Confidence 35579999875333 2343 4456888998 999988765
No 315
>PLN02427 UDP-apiose/xylose synthase
Probab=31.88 E-value=28 Score=31.55 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=17.9
Q ss_pred CCCCCeEEEEEecChhhHHHHHHHHHHhhhc
Q 027253 40 KSPQPLSTLIVLGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 40 ~~~~~~kiliv~GtGGH~~p~lal~~~l~~~ 70 (226)
++.++|||+|+|||| +=+-.+++.|.++
T Consensus 10 ~~~~~~~VlVTGgtG---fIGs~lv~~L~~~ 37 (386)
T PLN02427 10 KPIKPLTICMIGAGG---FIGSHLCEKLMTE 37 (386)
T ss_pred CcccCcEEEEECCcc---hHHHHHHHHHHhc
Confidence 345679999999987 2334455555544
No 316
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=31.87 E-value=2.5e+02 Score=25.53 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=23.0
Q ss_pred eEEEEEecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..++|+|+|| |=|.-+-++++.+.....+.++..+.+
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd 182 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILED 182 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecC
Confidence 4678888777 667777788887743222335554443
No 317
>PLN00198 anthocyanidin reductase; Provisional
Probab=31.73 E-value=97 Score=27.30 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=19.1
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
+.++++|+||||+ =+..+++.|.+++++
T Consensus 8 ~~~~vlItG~~Gf---IG~~l~~~L~~~g~~ 35 (338)
T PLN00198 8 GKKTACVIGGTGF---LASLLIKLLLQKGYA 35 (338)
T ss_pred CCCeEEEECCchH---HHHHHHHHHHHCCCE
Confidence 4578999999974 344566667666654
No 318
>PRK15138 aldehyde reductase; Provisional
Probab=31.64 E-value=47 Score=30.73 Aligned_cols=29 Identities=17% Similarity=0.194 Sum_probs=23.3
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcchhHH
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+-++....++.++|+||+-|||.++=.+
T Consensus 73 ~v~~~~~~~~~~~~D~IIaiGGGS~iD~A 101 (387)
T PRK15138 73 TLMKAVKLVREEKITFLLAVGGGSVLDGT 101 (387)
T ss_pred HHHHHHHHHHHcCCCEEEEeCChHHHHHH
Confidence 44566777888999999999999877555
No 319
>PRK08221 anaerobic sulfite reductase subunit B; Provisional
Probab=31.41 E-value=1.2e+02 Score=26.30 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=17.5
Q ss_pred EEE-EEecChhhHHHHHHHHHHhhhc
Q 027253 46 STL-IVLGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 46 kil-iv~GtGGH~~p~lal~~~l~~~ 70 (226)
+++ |++||| +.|++++++.+..+
T Consensus 103 ~~llIAgGtG--ItP~~sil~~~~~~ 126 (263)
T PRK08221 103 ELIVVAGGTG--VAPVKGLMRYFYEN 126 (263)
T ss_pred cEEEEccccc--HHHHHHHHHHHHhC
Confidence 444 448998 99999999987543
No 320
>PRK05086 malate dehydrogenase; Provisional
Probab=31.37 E-value=3.8e+02 Score=23.93 Aligned_cols=25 Identities=8% Similarity=0.004 Sum_probs=18.0
Q ss_pred HHHHHHHhhHhcCCcEEEecCCCcc
Q 027253 133 ATTHALWLMVKIRPQVVLCNGPGTC 157 (226)
Q Consensus 133 ~~~~a~~il~k~kPdvVi~tGg~vs 157 (226)
.+....+.+.+..||.++.+....+
T Consensus 97 i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 97 IVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred HHHHHHHHHHHhCCCeEEEEccCch
Confidence 3445556677788999999888844
No 321
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=31.27 E-value=49 Score=26.90 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=14.5
Q ss_pred CCcchhHHHHHHHHHHHHH
Q 027253 1 MNKMDDFYFYIMTIIATSV 19 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (226)
||-||+++.-+++++++++
T Consensus 1 ~~~~~~~fwq~I~FlIll~ 19 (154)
T PRK06568 1 MNFLDESFWLAVSFVIFVY 19 (154)
T ss_pred CCchHhHHHHHHHHHHHHH
Confidence 7889999887777766643
No 322
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=31.25 E-value=84 Score=28.52 Aligned_cols=31 Identities=13% Similarity=0.027 Sum_probs=21.4
Q ss_pred CCCCCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 40 KSPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 40 ~~~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
..+++|||+|+||||- =+..+++.|.+++++
T Consensus 17 ~~~~~~~IlVtGgtGf---IG~~l~~~L~~~G~~ 47 (370)
T PLN02695 17 WPSEKLRICITGAGGF---IASHIARRLKAEGHY 47 (370)
T ss_pred CCCCCCEEEEECCccH---HHHHHHHHHHhCCCE
Confidence 3356799999988873 445566677666654
No 323
>PRK07890 short chain dehydrogenase; Provisional
Probab=31.23 E-value=3e+02 Score=22.68 Aligned_cols=33 Identities=12% Similarity=-0.116 Sum_probs=21.1
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+++++|+||||| =+.++++.|.++++ .+.++..
T Consensus 5 ~k~vlItGa~~~---IG~~la~~l~~~G~--~V~~~~r 37 (258)
T PRK07890 5 GKVVVVSGVGPG---LGRTLAVRAARAGA--DVVLAAR 37 (258)
T ss_pred CCEEEEECCCCc---HHHHHHHHHHHcCC--EEEEEeC
Confidence 467888888875 44556667777775 3555443
No 324
>KOG2585 consensus Uncharacterized conserved protein [Function unknown]
Probab=31.22 E-value=1.5e+02 Score=28.39 Aligned_cols=56 Identities=18% Similarity=0.100 Sum_probs=36.9
Q ss_pred HHHHHHhhhccCCCCCCCCCCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEE
Q 027253 23 LIRLLHVLYLTGKSRRLKSPQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYI 78 (226)
Q Consensus 23 ~~r~~~~~~~~~~~~~~~~~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~ 78 (226)
.-.++.+++.+++=..++..+.-+|+|.+|.|=|-..++..+.+|...+|.+.+|+
T Consensus 245 Sq~v~~~lgg~~RL~srn~~~~P~V~Ilcgpgnnggdg~v~gRHL~~~G~~~vi~~ 300 (453)
T KOG2585|consen 245 SQAVATLLGGRKRLMSRNSHQWPLVAILCGPGNNGGDGLVCGRHLAQHGYTPVIYY 300 (453)
T ss_pred HHHHHHHcCccccccccccCCCceEEEEeCCCCccchhHHHHHHHHHcCceeEEEe
Confidence 33344444443321222333345789999999999999999999998888855555
No 325
>KOG2679 consensus Purple (tartrate-resistant) acid phosphatase [Posttranslational modification, protein turnover, chaperones]
Probab=31.16 E-value=97 Score=28.04 Aligned_cols=17 Identities=41% Similarity=0.339 Sum_probs=12.8
Q ss_pred CCCCCeEEEEEecChhh
Q 027253 40 KSPQPLSTLIVLGSGGH 56 (226)
Q Consensus 40 ~~~~~~kiliv~GtGGH 56 (226)
++++.++.+++|-.|=|
T Consensus 39 ~~dgslsflvvGDwGr~ 55 (336)
T KOG2679|consen 39 KSDGSLSFLVVGDWGRR 55 (336)
T ss_pred CCCCceEEEEEcccccC
Confidence 35567999999877754
No 326
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=31.16 E-value=88 Score=29.01 Aligned_cols=39 Identities=26% Similarity=0.256 Sum_probs=30.4
Q ss_pred hHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 141 MVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 141 l~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
+.+.++|+||+-|||-.+=++=++ |..+|+ |+|.+=+-+
T Consensus 80 ~~~~~~d~vIGVGGGk~iD~aK~~--A~~~~~---pfIsvPT~A 118 (360)
T COG0371 80 AGEDGADVVIGVGGGKTIDTAKAA--AYRLGL---PFISVPTIA 118 (360)
T ss_pred hcccCCCEEEEecCcHHHHHHHHH--HHHcCC---CEEEecCcc
Confidence 334679999999999999887653 788898 888776543
No 327
>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin. Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.
Probab=31.12 E-value=1.1e+02 Score=25.62 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=17.7
Q ss_pred eEEE-EEecChhhHHHHHHHHHHhhh
Q 027253 45 LSTL-IVLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 45 ~kil-iv~GtGGH~~p~lal~~~l~~ 69 (226)
.+++ |+|||| +.|++++++++..
T Consensus 114 ~~llliagGtG--iaP~~~~l~~~~~ 137 (247)
T cd06184 114 RPLVLISAGVG--ITPMLSMLEALAA 137 (247)
T ss_pred CcEEEEecccc--HhHHHHHHHHHHh
Confidence 3454 448888 9999999999765
No 328
>TIGR02619 putative CRISPR-associated protein, APE2256 family. This model represents a conserved domain of about 150 amino acids found in at least five archaeal species and three bacterial species, exclusively in species with CRISPR (Clustered Regularly Interspaced Short Palidromic Repeats). In six of eight species, the member of this family is in the vicinity of a CRISPR/Cas locus.
Probab=30.91 E-value=2.8e+02 Score=22.29 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=28.6
Q ss_pred HhcCCcE-EEecCCCcchhHHHHHHHHHHcC-Cccce-EEEEccCCcc
Q 027253 142 VKIRPQV-VLCNGPGTCIPLCVIAFLFKVIG-IRWSS-IFYVESIARV 186 (226)
Q Consensus 142 ~k~kPdv-Vi~tGg~vsvP~~lAa~lakllg-i~~~~-iv~~Esnarv 186 (226)
++...++ +=.||||=+.-..+. .++.++| + | .++||++..+
T Consensus 100 ~~~g~~v~iNaTGGfK~e~~~~~-l~g~~~ga~---~vyYihE~~~el 143 (149)
T TIGR02619 100 RREGNVVYIAATGGFKPESTFLV-LAGSLAGAL---PVFYIHESFNDL 143 (149)
T ss_pred cccCceEEEEcCCCcchHHHHHH-HHHHHhCCC---cEEEEEeccCcc
Confidence 3334554 778999988765543 6788999 7 6 5678998753
No 329
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=30.88 E-value=4.7e+02 Score=24.81 Aligned_cols=110 Identities=14% Similarity=0.119 Sum_probs=56.5
Q ss_pred CCCeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhh-cccCCcceEEEEeecCccc
Q 027253 42 PQPLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHK-KVIKGSSAQFMQIYRSREV 119 (226)
Q Consensus 42 ~~~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~-~~~~~~~~~~~~i~r~r~~ 119 (226)
+++.|++.. .|++|...++.++.+.+.... ..+|+.-+.+.-...+... ...+... .-.+..++.+. .+...+
T Consensus 75 ~~~~r~AYLI~~h~~d~~~l~RLL~aLYhpr--N~y~IHlDkKS~~~er~~l-~~~v~~~~~~~~~~NV~vl--~k~~~V 149 (421)
T PLN03183 75 DKLPRFAYLVSGSKGDLEKLWRTLRALYHPR--NQYVVHLDLESPAEERLEL-ASRVENDPMFSKVGNVYMI--TKANLV 149 (421)
T ss_pred CCCCeEEEEEEecCCcHHHHHHHHHHhcCCC--ceEEEEecCCCChHHHHHH-HHHhhccchhhccCcEEEE--ecceee
Confidence 456777755 899999999999999986432 3466665554432222111 0000000 00011234332 222222
Q ss_pred cchhHHHHHHHHHHHHHHHHhhHhcCC--cEEEecCCCcchhHH
Q 027253 120 GQSYVTSVWTTLLATTHALWLMVKIRP--QVVLCNGPGTCIPLC 161 (226)
Q Consensus 120 ~~~~~~~~~~~l~~~~~a~~il~k~kP--dvVi~tGg~vsvP~~ 161 (226)
.+ .-++++.+.+.++..+.+..+ |-.+-- .|..+|+.
T Consensus 150 ~W----GG~S~V~AtL~~m~~LL~~~~~WDyfinL-SGsDyPLk 188 (421)
T PLN03183 150 TY----RGPTMVANTLHACAILLKRSKDWDWFINL-SASDYPLV 188 (421)
T ss_pred cc----CChHHHHHHHHHHHHHHhhCCCCCEEEEc-cCCccccc
Confidence 22 124667788888888877544 444322 23455653
No 330
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=30.85 E-value=5.9e+02 Score=26.91 Aligned_cols=34 Identities=18% Similarity=0.076 Sum_probs=24.2
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++++ ||+| +.|++.+++.+.+.+.. ..++.|.
T Consensus 100 ~~vllVaGGiG--IAPl~s~~r~l~~~g~~-v~li~g~ 134 (1006)
T PRK12775 100 GHVVLVGGGLG--VAPVYPQLRAFKEAGAR-TTGIIGF 134 (1006)
T ss_pred CeEEEEEEhHH--HHHHHHHHHHHHhCCCc-EEEEEeC
Confidence 356555 8887 99999999999876643 4445454
No 331
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.69 E-value=47 Score=29.31 Aligned_cols=44 Identities=18% Similarity=0.104 Sum_probs=28.4
Q ss_pred HHHHHhhHhcCCcEEEecCCCcchh---HHHHHHHHHHcCCccceEEEEccCC
Q 027253 135 THALWLMVKIRPQVVLCNGPGTCIP---LCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 135 ~~a~~il~k~kPdvVi~tGg~vsvP---~~lAa~lakllgi~~~~iv~~Esna 184 (226)
..+++...+. +|+||+|||-=.-+ ..-+ +|+.+|. |.+++|..-
T Consensus 51 ~~~l~~a~~r-~D~vI~tGGLGPT~DDiT~e~--vAka~g~---~lv~~~~al 97 (255)
T COG1058 51 VEALREASER-ADVVITTGGLGPTHDDLTAEA--VAKALGR---PLVLDEEAL 97 (255)
T ss_pred HHHHHHHHhC-CCEEEECCCcCCCccHhHHHH--HHHHhCC---CcccCHHHH
Confidence 3455555544 99999999962211 1222 2688897 898887763
No 332
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=30.51 E-value=3.4e+02 Score=25.50 Aligned_cols=87 Identities=15% Similarity=0.074 Sum_probs=50.9
Q ss_pred HHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhHHHHHHHHHHHHHHHHhh
Q 027253 62 NLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYVTSVWTTLLATTHALWLM 141 (226)
Q Consensus 62 al~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~~~~~~~l~~~~~a~~il 141 (226)
.++..++..++. .++++.+..-.-.-.+...++.+..+ ++.+.-....+. .+ +..++++++.+.
T Consensus 60 Evg~dikn~gaK-k~llvTDkni~~~~~~~~a~~~L~~~------~I~~~vyD~v~~--eP-------tv~s~~~alefa 123 (465)
T KOG3857|consen 60 EVGDDIKNLGAK-KTLLVTDKNIAKLGLVKVAQDSLEEN------GINVEVYDKVQP--EP-------TVGSVTAALEFA 123 (465)
T ss_pred HHHHHHHhcCcc-ceEEeeCCChhhcccHHHHHHHHHHc------CCceEEecCccC--CC-------chhhHHHHHHHH
Confidence 356667766776 45555544332222222233333322 334333322221 11 224788999999
Q ss_pred HhcCCcEEEecCCCcchhHHHHH
Q 027253 142 VKIRPQVVLCNGPGTCIPLCVIA 164 (226)
Q Consensus 142 ~k~kPdvVi~tGg~vsvP~~lAa 164 (226)
++.+.|..++-|||.+.=.+-|+
T Consensus 124 k~~~fDs~vaiGGGSa~DtaKaa 146 (465)
T KOG3857|consen 124 KKKNFDSFVAIGGGSAHDTAKAA 146 (465)
T ss_pred HhcccceEEEEcCcchhhhHHHH
Confidence 99999999999999988777664
No 333
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=30.46 E-value=2.8e+02 Score=25.00 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=11.1
Q ss_pred HhhHhcCCcEEEecCCCcchhHH
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.++.+++||+|+=.-++=-+|.|
T Consensus 71 ~~~~~~~pdiVfHaAA~KhVpl~ 93 (293)
T PF02719_consen 71 RIFEEYKPDIVFHAAALKHVPLM 93 (293)
T ss_dssp HHTT--T-SEEEE------HHHH
T ss_pred HHHhhcCCCEEEEChhcCCCChH
Confidence 45567899999999998888875
No 334
>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated
Probab=30.38 E-value=73 Score=28.48 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=22.1
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCC-CeEEEEEcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAAT 82 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~-~~~~~~~~~ 82 (226)
++|+|||| +.|++++++.+...+.. ...++.+..
T Consensus 208 vlIagGtG--iaP~~s~l~~~~~~~~~~~i~l~~g~r 242 (339)
T PRK07609 208 VLLASGTG--FAPIKSIVEHLRAKGIQRPVTLYWGAR 242 (339)
T ss_pred EEEecCcC--hhHHHHHHHHHHhcCCCCcEEEEEecC
Confidence 44558997 89999999998654432 234444443
No 335
>PRK08251 short chain dehydrogenase; Provisional
Probab=30.34 E-value=3.1e+02 Score=22.52 Aligned_cols=32 Identities=16% Similarity=0.075 Sum_probs=19.4
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+|||||= +.++++.|.++++ .+.+++.
T Consensus 3 k~vlItGas~gi---G~~la~~l~~~g~--~v~~~~r 34 (248)
T PRK08251 3 QKILITGASSGL---GAGMAREFAAKGR--DLALCAR 34 (248)
T ss_pred CEEEEECCCCHH---HHHHHHHHHHcCC--EEEEEeC
Confidence 467787888753 4556667766664 3444443
No 336
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=30.21 E-value=1.1e+02 Score=26.52 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=23.1
Q ss_pred EEEE-ecChhhHHHHHHHHHHhhhcC-CCCeEEEEEc
Q 027253 47 TLIV-LGSGGHTAEMMNLLSVLQMDR-FTPRFYIAAA 81 (226)
Q Consensus 47 iliv-~GtGGH~~p~lal~~~l~~~~-~~~~~~~~~~ 81 (226)
++++ |||| ..|+.++++++.+.+ ....+.+.|.
T Consensus 110 vlliagGtG--~aPl~~i~~~~~~~~~~~~V~~~~G~ 144 (252)
T COG0543 110 VLLIAGGTG--IAPLYAIAKELKEKGDANKVTLLYGA 144 (252)
T ss_pred EEEEecccC--HhHHHHHHHHHHhcCCCceEEEEEec
Confidence 6655 8998 899999999998754 1224455443
No 337
>PRK07326 short chain dehydrogenase; Provisional
Probab=30.20 E-value=3e+02 Score=22.35 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=18.2
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||||| -+..+++.|.+++++ +..++.
T Consensus 7 ~~ilItGatg~---iG~~la~~l~~~g~~--V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKG---IGFAIAEALLAEGYK--VAITAR 38 (237)
T ss_pred CEEEEECCCCc---HHHHHHHHHHHCCCE--EEEeeC
Confidence 56777777663 344555566666653 555443
No 338
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=30.15 E-value=1.3e+02 Score=24.72 Aligned_cols=40 Identities=10% Similarity=0.106 Sum_probs=25.1
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
..+...+||+||+++....-..... ..-.++ |++++++..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~---~~~~~i---p~~~~~~~~ 93 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEK---LLEAGI---PVVVFDSSS 93 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHH---HHHTTS---EEEEESSTT
T ss_pred HHHHhCCCCEEEEeccccchHHHHH---Hhcccc---eEEEeeccc
Confidence 3455678999999998822222211 234577 999999875
No 339
>PRK05717 oxidoreductase; Validated
Probab=30.13 E-value=3.2e+02 Score=22.66 Aligned_cols=31 Identities=13% Similarity=0.202 Sum_probs=18.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
.+++|+||+|| + +.++++.|.++++ .+.++.
T Consensus 11 k~vlItG~sg~-I--G~~~a~~l~~~g~--~v~~~~ 41 (255)
T PRK05717 11 RVALVTGAARG-I--GLGIAAWLIAEGW--QVVLAD 41 (255)
T ss_pred CEEEEeCCcch-H--HHHHHHHHHHcCC--EEEEEc
Confidence 45677777765 3 4445566666664 355544
No 340
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=30.05 E-value=1.9e+02 Score=30.56 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=14.4
Q ss_pred HHHhhHhcCCcEEEec-CCC
Q 027253 137 ALWLMVKIRPQVVLCN-GPG 155 (226)
Q Consensus 137 a~~il~k~kPdvVi~t-Gg~ 155 (226)
.+.++++++||.||.. |+-
T Consensus 622 vl~I~~~e~~dgVI~~~g~~ 641 (1068)
T PRK12815 622 VLNVAEAENIKGVIVQFGGQ 641 (1068)
T ss_pred HHHHHhhcCCCEEEEecCcH
Confidence 3567889999999974 554
No 341
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=30.00 E-value=3.6e+02 Score=23.14 Aligned_cols=59 Identities=12% Similarity=0.182 Sum_probs=33.4
Q ss_pred ccccchhHHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHH-HHHHcCCccceEE
Q 027253 117 REVGQSYVTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAF-LFKVIGIRWSSIF 178 (226)
Q Consensus 117 r~~~~~~~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~-lakllgi~~~~iv 178 (226)
|..++.-.......+.-+....+.+.+..||.++-+-+. |+-+.+. +.+..|+++.+++
T Consensus 82 ~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tN---P~d~~t~~~~~~sg~~~~kvi 141 (263)
T cd00650 82 RKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSN---PVDIITYLVWRYSGLPKEKVI 141 (263)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC---cHHHHHHHHHHHhCCCchhEE
Confidence 333343333444444555666677778889998888876 4433322 2556566444443
No 342
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=29.97 E-value=72 Score=27.94 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=17.6
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
||++|+||||+- +..+++.|.+++++
T Consensus 1 m~vlVtGatG~i---G~~l~~~L~~~g~~ 26 (338)
T PRK10675 1 MRVLVTGGSGYI---GSHTCVQLLQNGHD 26 (338)
T ss_pred CeEEEECCCChH---HHHHHHHHHHCCCe
Confidence 689999999854 34455666556654
No 343
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=29.88 E-value=3.8e+02 Score=23.38 Aligned_cols=33 Identities=15% Similarity=0.122 Sum_probs=20.8
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||||| -+.++++.|.++++ .+++++.
T Consensus 6 ~k~vlVTGas~g---IG~~~a~~L~~~G~--~V~~~~r 38 (322)
T PRK07453 6 KGTVIITGASSG---VGLYAAKALAKRGW--HVIMACR 38 (322)
T ss_pred CCEEEEEcCCCh---HHHHHHHHHHHCCC--EEEEEEC
Confidence 356777799886 34556667766664 3555543
No 344
>PLN02207 UDP-glycosyltransferase
Probab=29.83 E-value=82 Score=30.13 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=25.9
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcC--CCCeEEEEEc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDR--FTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~--~~~~~~~~~~ 81 (226)
-|++++ .=.=||+.||+.+++.|..++ .. .++++..
T Consensus 4 ~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~-vT~~~t~ 42 (468)
T PLN02207 4 AELIFIPTPTVGHLVPFLEFARRLIEQDDRIR-ITILLMK 42 (468)
T ss_pred cEEEEeCCcchhhHHHHHHHHHHHHhCCCCeE-EEEEEcC
Confidence 578888 444599999999999998665 44 4444433
No 345
>PRK10586 putative oxidoreductase; Provisional
Probab=29.69 E-value=4.4e+02 Score=24.11 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=25.8
Q ss_pred cCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 144 IRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 144 ~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
.++|+||+-|||.++=.+=++ +...++ |++.+=+-+
T Consensus 85 ~~~d~iiavGGGs~iD~aK~~--a~~~~~---p~i~vPT~a 120 (362)
T PRK10586 85 DDRQVVIGVGGGALLDTAKAL--ARRLGL---PFVAIPTIA 120 (362)
T ss_pred cCCCEEEEecCcHHHHHHHHH--HhhcCC---CEEEEeCCc
Confidence 578999999999888766432 344565 887776554
No 346
>cd00860 ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=29.65 E-value=96 Score=21.40 Aligned_cols=30 Identities=10% Similarity=0.146 Sum_probs=24.8
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|-.++++..+.++..+++.+++.|+..++.
T Consensus 1 p~~v~ii~~~~~~~~~a~~~~~~Lr~~g~~ 30 (91)
T cd00860 1 PVQVVVIPVTDEHLDYAKEVAKKLSDAGIR 30 (91)
T ss_pred CeEEEEEeeCchHHHHHHHHHHHHHHCCCE
Confidence 356778877788999999999999987765
No 347
>PLN02206 UDP-glucuronate decarboxylase
Probab=29.61 E-value=84 Score=29.57 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=19.0
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.+.|||+|+|||| +=+-.|++.|.+++++
T Consensus 117 ~~~~kILVTGatG---fIGs~Lv~~Ll~~G~~ 145 (442)
T PLN02206 117 RKGLRVVVTGGAG---FVGSHLVDRLMARGDS 145 (442)
T ss_pred cCCCEEEEECccc---HHHHHHHHHHHHCcCE
Confidence 4679999999886 2333455666666654
No 348
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=29.61 E-value=3.7e+02 Score=23.18 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=24.4
Q ss_pred eEEEEEecChhhH-HHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 45 LSTLIVLGSGGHT-AEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 45 ~kiliv~GtGGH~-~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
.-.+++|||=|=+ ..+..+.+.+++.. -+.+++.|+.+.+
T Consensus 28 tdai~vGGS~~vt~~~~~~~v~~ik~~~-lPvilfp~~~~~i 68 (223)
T TIGR01768 28 TDAILIGGSQGVTYEKTDTLIEALRRYG-LPIILFPSNPTNV 68 (223)
T ss_pred CCEEEEcCCCcccHHHHHHHHHHHhccC-CCEEEeCCCcccc
Confidence 3456676665554 45555777777644 4577777766555
No 349
>PRK09267 flavodoxin FldA; Validated
Probab=29.48 E-value=60 Score=25.88 Aligned_cols=25 Identities=16% Similarity=0.046 Sum_probs=20.6
Q ss_pred eEEEEE-ecChhhHHH-HHHHHHHhhh
Q 027253 45 LSTLIV-LGSGGHTAE-MMNLLSVLQM 69 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p-~lal~~~l~~ 69 (226)
||++|+ ++..|||.. |-+|++.+..
T Consensus 2 mki~IiY~S~tGnT~~vA~~Ia~~l~~ 28 (169)
T PRK09267 2 AKIGIFFGSDTGNTEDIAKMIQKKLGK 28 (169)
T ss_pred CeEEEEEECCCChHHHHHHHHHHHhCC
Confidence 688999 888999999 6788888753
No 350
>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t
Probab=29.34 E-value=1.5e+02 Score=25.72 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=16.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhh
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~ 69 (226)
|+|++||| +.|++++++++..
T Consensus 119 vlIAgGtG--IaP~~s~l~~~~~ 139 (267)
T cd06182 119 IMVGPGTG--IAPFRGFLQERAA 139 (267)
T ss_pred EEEecCcc--HHHHHHHHHHHHH
Confidence 44558888 9999999998764
No 351
>PTZ00319 NADH-cytochrome B5 reductase; Provisional
Probab=29.20 E-value=1e+02 Score=27.33 Aligned_cols=23 Identities=13% Similarity=0.457 Sum_probs=17.5
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
+++++ |||| +.|++++++.+.++
T Consensus 168 ~illIAgGtG--IaP~~sml~~l~~~ 191 (300)
T PTZ00319 168 AFAMIAGGTG--ITPMLQIIHAIKKN 191 (300)
T ss_pred eEEEEecCcc--cCHHHHHHHHHHhC
Confidence 45554 7777 99999999987643
No 352
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=29.16 E-value=95 Score=25.83 Aligned_cols=38 Identities=13% Similarity=0.191 Sum_probs=24.0
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
-.+.+.+||+|++++....-... . . .+-.|+ |++.++.
T Consensus 52 E~i~~l~PDlIi~~~~~~~~~~~-~-~-l~~~gi---pvv~~~~ 89 (235)
T cd01149 52 EGVLSLKPTLVIASDEAGPPEAL-D-Q-LRAAGV---PVVTVPS 89 (235)
T ss_pred HHhhccCCCEEEEcCCCCCHHHH-H-H-HHHcCC---eEEEecC
Confidence 45667789999998765432222 1 1 234677 9988764
No 353
>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.
Probab=29.11 E-value=1.4e+02 Score=24.54 Aligned_cols=25 Identities=20% Similarity=0.314 Sum_probs=18.5
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~ 71 (226)
-+++++ +||| +.|++++++++..++
T Consensus 96 ~~~vlia~GtG--iap~~~~l~~~~~~~ 121 (216)
T cd06198 96 ARQIWIAGGIG--ITPFLALLEALAARG 121 (216)
T ss_pred ceEEEEccccC--HHHHHHHHHHHHhcC
Confidence 455544 8888 899999999876543
No 354
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=28.97 E-value=97 Score=27.31 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=58.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
||||++==-|=|--=+.++++.|+ .. .+++++.-....|.. ..++.-. +......+.. + .|.
T Consensus 1 mrILlTNDDGi~a~Gi~aL~~al~-~~--~dV~VVAP~~~qSg~-----s~slTl~-----~Plr~~~~~~-~----~~a 62 (252)
T COG0496 1 MRILLTNDDGIHAPGIRALARALR-EG--ADVTVVAPDREQSGA-----SHSLTLH-----EPLRVRQVDN-G----AYA 62 (252)
T ss_pred CeEEEecCCccCCHHHHHHHHHHh-hC--CCEEEEccCCCCccc-----ccccccc-----cCceeeEecc-c----eEE
Confidence 678888666666666677777787 33 256776543322211 0000000 0111111111 0 011
Q ss_pred HHHHHHHHHHHHHHHhhHhc-CCcEEEe---cCCCcch-----hHHHHHHHHHHcCCccceEEEEccCC
Q 027253 125 TSVWTTLLATTHALWLMVKI-RPQVVLC---NGPGTCI-----PLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~-kPdvVi~---tGg~vsv-----P~~lAa~lakllgi~~~~iv~~Esna 184 (226)
.. .+=.-++.-++..+.++ +||+||| .|+..+- -.+-||.=|.++|+ |-|-+=+..
T Consensus 63 v~-GTPaDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~Gi---psIA~S~~~ 127 (252)
T COG0496 63 VN-GTPADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGI---PAIAISLAY 127 (252)
T ss_pred ec-CChHHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCc---cceeeeehh
Confidence 11 12223666777777754 5999997 3444322 22333344889998 766555553
No 355
>PRK15204 undecaprenyl-phosphate galactose phosphotransferase; Provisional
Probab=28.95 E-value=2.7e+02 Score=26.51 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCCCeEEEEEecChhhHHHHHHHHH
Q 027253 9 FYIMTIIATSVAIFLIRLLHVLYLTGKSRRLKSPQPLSTLIVLGSGGHTAEMMNLLS 65 (226)
Q Consensus 9 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~kiliv~GtGGH~~p~lal~~ 65 (226)
++++++++.++++.+.|++........ . ....+ +++-|+|+|..++.+.++
T Consensus 116 v~il~~~l~l~ll~~~R~l~r~ll~~~----g-~~~rr-vLIIGaG~~a~~l~~~L~ 166 (476)
T PRK15204 116 VWVFCWTFALILVPFFRALTKHLLNKL----G-IWKKK-TIILGSGQNARGAYSALQ 166 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc----C-CCCCe-EEEEECCHHHHHHHHHHH
Confidence 344555555566666675432221111 0 11123 445678888776555443
No 356
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=28.93 E-value=94 Score=26.15 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=18.6
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
+.++++|+|+||+ -+.++++.|..++++
T Consensus 16 ~~~~ilItGasG~---iG~~l~~~L~~~g~~ 43 (251)
T PLN00141 16 KTKTVFVAGATGR---TGKRIVEQLLAKGFA 43 (251)
T ss_pred cCCeEEEECCCcH---HHHHHHHHHHhCCCE
Confidence 3578999998884 445566666555554
No 357
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=28.83 E-value=3.7e+02 Score=22.99 Aligned_cols=35 Identities=14% Similarity=0.189 Sum_probs=27.2
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCCc
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIAR 185 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esnar 185 (226)
.||+||-.++.---..+.= |..++| |+ -++++|+.
T Consensus 155 ~Pd~vii~d~~~~~~ai~E---a~~l~I---P~I~ivDTn~~ 190 (225)
T TIGR01011 155 LPDLLFVIDPVKEKIAVAE---ARKLGI---PVVAIVDTNCD 190 (225)
T ss_pred CCCEEEEeCCCccHHHHHH---HHHcCC---CEEEEeeCCCC
Confidence 6999999999877555533 688999 65 57899985
No 358
>PRK06153 hypothetical protein; Provisional
Probab=28.66 E-value=37 Score=31.82 Aligned_cols=22 Identities=14% Similarity=0.209 Sum_probs=18.3
Q ss_pred CCeEEEEE--ecChhhHHHHHHHH
Q 027253 43 QPLSTLIV--LGSGGHTAEMMNLL 64 (226)
Q Consensus 43 ~~~kiliv--~GtGGH~~p~lal~ 64 (226)
+..||+|+ ||+|+++.+.|+=+
T Consensus 175 ~~~~VaIVG~GG~GS~Va~~LAR~ 198 (393)
T PRK06153 175 EGQRIAIIGLGGTGSYILDLVAKT 198 (393)
T ss_pred hhCcEEEEcCCccHHHHHHHHHHc
Confidence 34799999 89999999887765
No 359
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=28.61 E-value=3.2e+02 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.221 Sum_probs=17.6
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
.+++|+||||| + +.++++.|.+++++ ++++
T Consensus 6 ~~ilI~Gasg~-i--G~~la~~l~~~g~~--v~~~ 35 (247)
T PRK05565 6 KVAIVTGASGG-I--GRAIAELLAKEGAK--VVIA 35 (247)
T ss_pred CEEEEeCCCcH-H--HHHHHHHHHHCCCE--EEEE
Confidence 46777788763 3 34455566666654 4444
No 360
>PRK06194 hypothetical protein; Provisional
Probab=28.53 E-value=3.6e+02 Score=22.76 Aligned_cols=32 Identities=9% Similarity=0.040 Sum_probs=20.1
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||+|| =+.++++.|.++++. +.++..
T Consensus 7 k~vlVtGasgg---IG~~la~~l~~~G~~--V~~~~r 38 (287)
T PRK06194 7 KVAVITGAASG---FGLAFARIGAALGMK--LVLADV 38 (287)
T ss_pred CEEEEeCCccH---HHHHHHHHHHHCCCE--EEEEeC
Confidence 56788888875 245566677666653 555443
No 361
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=28.48 E-value=2.8e+02 Score=24.36 Aligned_cols=37 Identities=22% Similarity=0.138 Sum_probs=27.8
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
|||||+ .+.=|=.-.+..+.+.|++.-.+.++.++..
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~ 38 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVE 38 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEEC
Confidence 689999 8889988877778888876544556666654
No 362
>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain. Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then
Probab=28.43 E-value=1.6e+02 Score=25.75 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=16.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhh
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~ 69 (226)
++|++||| +.|++++++++..
T Consensus 139 vlIagGtG--IaP~~s~l~~~~~ 159 (286)
T cd06208 139 IMIATGTG--IAPFRSFLRRLFR 159 (286)
T ss_pred EEEecCcc--HHHHHHHHHHHHH
Confidence 55558998 8999999988643
No 363
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=28.35 E-value=4.1e+02 Score=23.33 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=11.9
Q ss_pred hHhcCCcEEEecCCCcc
Q 027253 141 MVKIRPQVVLCNGPGTC 157 (226)
Q Consensus 141 l~k~kPdvVi~tGg~vs 157 (226)
+...+||+||=+.+..+
T Consensus 74 ~~~~~~d~ViH~Aa~~~ 90 (343)
T TIGR01472 74 IDEIKPTEIYNLAAQSH 90 (343)
T ss_pred HHhCCCCEEEECCcccc
Confidence 33447999998877644
No 364
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=28.13 E-value=1.8e+02 Score=25.87 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=40.0
Q ss_pred hhHhcCC-cEEEecCCCcchhHHHHHHHHHHc--CCccceEEE--EccCC-ccCCcc---hhhhhhcccCCccEEEeech
Q 027253 140 LMVKIRP-QVVLCNGPGTCIPLCVIAFLFKVI--GIRWSSIFY--VESIA-RVKRLS---LSGLLLYKLCIADQFFVQWP 210 (226)
Q Consensus 140 il~k~kP-dvVi~tGg~vsvP~~lAa~lakll--gi~~~~iv~--~Esna-rv~~~s---ltgKll~~~~~ad~~~vq~e 210 (226)
++.+.+| |+|+..=|....|...++++.++. |+ |+++ ||-+. +....+ .--+.+ ++.||.+++.-+
T Consensus 58 ~~~~~~~~Dvv~~~~P~~~~~~~~~~~~~~~k~~~~---k~i~~ihD~~~~~~~~~~~~~~~~~~~--~~~aD~iI~~S~ 132 (333)
T PRK09814 58 ILASLKPGDIVIFQFPTWNGFEFDRLFVDKLKKKQV---KIIILIHDIEPLRFDSNYYLMKEEIDM--LNLADVLIVHSK 132 (333)
T ss_pred HHhcCCCCCEEEEECCCCchHHHHHHHHHHHHHcCC---EEEEEECCcHHHhccccchhhHHHHHH--HHhCCEEEECCH
Confidence 5667889 998886665543322222333332 55 8887 55432 111111 112445 457999999888
Q ss_pred hhhhhC
Q 027253 211 QLQRKY 216 (226)
Q Consensus 211 ~~~~~~ 216 (226)
.+++.+
T Consensus 133 ~~~~~l 138 (333)
T PRK09814 133 KMKDRL 138 (333)
T ss_pred HHHHHH
Confidence 876654
No 365
>PRK08589 short chain dehydrogenase; Validated
Probab=28.06 E-value=3.7e+02 Score=22.72 Aligned_cols=33 Identities=12% Similarity=-0.059 Sum_probs=21.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
.+++|+||||| =+.++++.|.++++ .+++++.+
T Consensus 7 k~vlItGas~g---IG~aia~~l~~~G~--~vi~~~r~ 39 (272)
T PRK08589 7 KVAVITGASTG---IGQASAIALAQEGA--YVLAVDIA 39 (272)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCC--EEEEEeCc
Confidence 46777788875 35677778877765 45655544
No 366
>PF15202 Adipogenin: Adipogenin
Probab=28.03 E-value=97 Score=21.93 Aligned_cols=22 Identities=18% Similarity=0.329 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027253 7 FYFYIMTIIATSVAIFLIRLLH 28 (226)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~r~~~ 28 (226)
|.+++-..+++..+++++|++.
T Consensus 19 fwlclpv~lllfl~ivwlrfll 40 (81)
T PF15202_consen 19 FWLCLPVGLLLFLLIVWLRFLL 40 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666666777753
No 367
>PF09651 Cas_APE2256: CRISPR-associated protein (Cas_APE2256); InterPro: IPR013442 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a conserved region of about 150 amino acids found in a family of Cas proteins in at least five archaeal and three bacterial species. In six of eight species, the protein is encoded the vicinity of a CRISPR/Cas locus.; PDB: 3QYF_A.
Probab=28.02 E-value=2.9e+02 Score=21.55 Aligned_cols=33 Identities=12% Similarity=0.133 Sum_probs=19.5
Q ss_pred EEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCC
Q 027253 148 VVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIA 184 (226)
Q Consensus 148 vVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esna 184 (226)
++=.||||=+.-..+. .+|.+.++ |+ +.||+..
T Consensus 95 ~~n~TGGfK~~~~~~~-~~g~~~~~---~v~Yi~E~~~ 128 (136)
T PF09651_consen 95 IFNATGGFKAEIAYLT-LLGMLYGD---PVYYIFEEFS 128 (136)
T ss_dssp EEE-SSS-HHHHHHHH-HHHHHT-----EEEEEETTTT
T ss_pred EEEeCCChHHHHHHHH-HHHHHcCC---CEEEEEcCCC
Confidence 4557999988765543 66788887 55 5578754
No 368
>PRK12743 oxidoreductase; Provisional
Probab=28.02 E-value=3.5e+02 Score=22.47 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=19.7
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+++|+||||| + +.++++.|.++++. +.++..
T Consensus 4 ~vlItGas~g-i--G~~~a~~l~~~G~~--V~~~~~ 34 (256)
T PRK12743 4 VAIVTASDSG-I--GKACALLLAQQGFD--IGITWH 34 (256)
T ss_pred EEEEECCCch-H--HHHHHHHHHHCCCE--EEEEeC
Confidence 5667788776 3 45677787777754 444443
No 369
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=27.96 E-value=1.5e+02 Score=22.35 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=21.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
||||++|+.|= --+|+..|.+..-...+|+...+.++
T Consensus 1 MkVLviGsGgR----EHAia~~l~~s~~v~~v~~aPGN~G~ 37 (100)
T PF02844_consen 1 MKVLVIGSGGR----EHAIAWKLSQSPSVEEVYVAPGNPGT 37 (100)
T ss_dssp EEEEEEESSHH----HHHHHHHHTTCTTEEEEEEEE--TTG
T ss_pred CEEEEECCCHH----HHHHHHHHhcCCCCCEEEEeCCCHHH
Confidence 78998865442 22566677654322367776666555
No 370
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=27.95 E-value=1.6e+02 Score=27.00 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=29.5
Q ss_pred HHHHHHHhhHhcCC---cEEEecCCCcchhHHHHHHHHHHcCCccceEEEE
Q 027253 133 ATTHALWLMVKIRP---QVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYV 180 (226)
Q Consensus 133 ~~~~a~~il~k~kP---dvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~ 180 (226)
.+-++...+++.++ |+||+-|||++.=++=++-.....|+ |.+.+
T Consensus 61 ~v~~~~~~~~~~~~~r~d~iIaiGGGsv~D~ak~vA~~~~rgi---~~i~i 108 (346)
T cd08196 61 AVSSVIESLRQNGARRNTHLVAIGGGIIQDVTTFVASIYMRGV---SWSFV 108 (346)
T ss_pred HHHHHHHHHHHcCCCCCcEEEEECChHHHHHHHHHHHHHHcCC---CeEEe
Confidence 34455566677677 89999999998865533211234576 77776
No 371
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=27.91 E-value=23 Score=29.81 Aligned_cols=18 Identities=28% Similarity=0.183 Sum_probs=14.8
Q ss_pred cChhhHHHHHHHHHHhhh
Q 027253 52 GSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 52 GtGGH~~p~lal~~~l~~ 69 (226)
-||||.+|+..++..+..
T Consensus 68 iSGaH~NPaVTla~~l~g 85 (227)
T PF00230_consen 68 ISGAHFNPAVTLAFALTG 85 (227)
T ss_dssp HHTSS-SHHHHHHHHHTT
T ss_pred ccccccccchhhheeeee
Confidence 389999999999998764
No 372
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=27.85 E-value=1.1e+02 Score=28.53 Aligned_cols=51 Identities=14% Similarity=0.230 Sum_probs=31.7
Q ss_pred HHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhh
Q 027253 135 THALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGL 194 (226)
Q Consensus 135 ~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgK 194 (226)
++-..++++.+||++|+.+++... +.++.+|+ |++.+.+..+-...|..|-
T Consensus 363 ~e~~~~l~~~~pDl~i~~~~~~~~------~~~~~~gi---p~~~~~~~~~~~~~Gy~G~ 413 (426)
T cd01972 363 YQFYNLLKRVKPDFIIFRHGGLFP------DATVYLGI---PVVPLNDELNQPQFGYRGL 413 (426)
T ss_pred HHHHHHHHHhCCCEEEEcCCCccH------HHHHhcCC---CEEeccccccCCcccHhHH
Confidence 345567888999999987766432 12455898 8887754422223355443
No 373
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=27.74 E-value=84 Score=27.10 Aligned_cols=26 Identities=12% Similarity=0.046 Sum_probs=15.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|+++|+||||+ -+..+++.|.+++++
T Consensus 1 ~~vlItG~~G~---iG~~l~~~L~~~g~~ 26 (328)
T TIGR03466 1 MKVLVTGATGF---VGSAVVRLLLEQGEE 26 (328)
T ss_pred CeEEEECCccc---hhHHHHHHHHHCCCE
Confidence 57888888873 333455555555543
No 374
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=27.63 E-value=81 Score=25.69 Aligned_cols=16 Identities=13% Similarity=0.293 Sum_probs=12.3
Q ss_pred cEEEecCCCcchhHHH
Q 027253 147 QVVLCNGPGTCIPLCV 162 (226)
Q Consensus 147 dvVi~tGg~vsvP~~l 162 (226)
.++..|||-.+.|..-
T Consensus 126 rl~matggpaaa~aaa 141 (189)
T PF05568_consen 126 RLVMATGGPAAASAAA 141 (189)
T ss_pred ccccccCCcccccchh
Confidence 5688899988887654
No 375
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=27.63 E-value=1.6e+02 Score=24.47 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=18.4
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+|||| + =+.++++.|.+++++ +.+++.
T Consensus 8 ~~vlItGasg-~--iG~~la~~l~~~G~~--v~~~~r 39 (262)
T PRK13394 8 KTAVVTGAAS-G--IGKEIALELARAGAA--VAIADL 39 (262)
T ss_pred CEEEEECCCC-h--HHHHHHHHHHHCCCe--EEEEeC
Confidence 4677777776 3 344456666666654 444443
No 376
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=27.47 E-value=76 Score=29.54 Aligned_cols=14 Identities=29% Similarity=0.442 Sum_probs=10.9
Q ss_pred eEEEEE-ecChhhHH
Q 027253 45 LSTLIV-LGSGGHTA 58 (226)
Q Consensus 45 ~kiliv-~GtGGH~~ 58 (226)
+||+|+ ||.||+..
T Consensus 2 ~~VVIIGgG~aG~~a 16 (438)
T PRK13512 2 PKIIVVGAVAGGATC 16 (438)
T ss_pred CeEEEECCcHHHHHH
Confidence 589999 78888743
No 377
>CHL00067 rps2 ribosomal protein S2
Probab=27.43 E-value=4e+02 Score=22.88 Aligned_cols=35 Identities=11% Similarity=0.124 Sum_probs=27.5
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceE-EEEccCCc
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSI-FYVESIAR 185 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~i-v~~Esnar 185 (226)
.||+||-.++.---..+-= |..+|| |+ -++++|+.
T Consensus 161 ~P~~iiv~d~~~~~~ai~E---a~~l~I---PvIaivDTn~~ 196 (230)
T CHL00067 161 LPDIVIIIDQQEEYTALRE---CRKLGI---PTISILDTNCD 196 (230)
T ss_pred CCCEEEEeCCcccHHHHHH---HHHcCC---CEEEEEeCCCC
Confidence 5999999999987655433 688999 65 57899985
No 378
>PF04493 Endonuclease_5: Endonuclease V; InterPro: IPR007581 Endonuclease V is specific for single-stranded DNA, for duplex DNA that contains uracil, or that is damaged []. Matrix metalloproteinase-1 (MMP-1) is the major enzyme responsible for collagen 1 digestion. It is induced by exposure to sunlight, but is reduced with treatment of DNA repair enzyme endonuclease V []. This family consequently has potential medical importance []. This endonuclease also appears in bifunctional enzymes, such as the bifunctional methyltransferase/endonuclease in Thermoplasma acidophilum.; GO: 0004519 endonuclease activity, 0006281 DNA repair; PDB: 3GA2_A 2W36_A 3HD0_A 2W35_B 3GOC_B.
Probab=27.41 E-value=87 Score=26.64 Aligned_cols=46 Identities=26% Similarity=0.337 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhHhcCCcEEEecCCCcchh--HHHHHHHHHHcCCccceEEEE
Q 027253 131 LLATTHALWLMVKIRPQVVLCNGPGTCIP--LCVIAFLFKVIGIRWSSIFYV 180 (226)
Q Consensus 131 l~~~~~a~~il~k~kPdvVi~tGg~vsvP--~~lAa~lakllgi~~~~iv~~ 180 (226)
+..+.++++-+. .+||+++.-|-+..=| +.+|+.++-.+++ |+|=+
T Consensus 76 ~P~~l~~l~~l~-~~~dvilvDG~G~~HpR~~GlA~HlGv~l~i---PtIGV 123 (206)
T PF04493_consen 76 LPCILEALEKLK-NKPDVILVDGHGILHPRRFGLASHLGVLLDI---PTIGV 123 (206)
T ss_dssp HHHHHHHHHTSS-S--SCEEEES-SSSSTTS--HHHHHHHHHTS----EEEE
T ss_pred HHHHHHHHHHhc-ccCCEEEEeCceeecCCCcChhheeeeccCC---CEEEE
Confidence 345566666553 6899999999998877 6888888888887 66543
No 379
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.26 E-value=1.2e+02 Score=25.29 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=20.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||+|| -+.++++.|.++++ .++.+..
T Consensus 2 k~~lItG~s~g---iG~~ia~~l~~~G~--~Vi~~~r 33 (252)
T PRK07677 2 KVVIITGGSSG---MGKAMAKRFAEEGA--NVVITGR 33 (252)
T ss_pred CEEEEeCCCCh---HHHHHHHHHHHCCC--EEEEEeC
Confidence 35677788887 55666677766664 3444443
No 380
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=27.18 E-value=1.1e+02 Score=28.47 Aligned_cols=55 Identities=24% Similarity=0.226 Sum_probs=34.4
Q ss_pred hcCCcEEEec-CCC-----cchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccEE
Q 027253 143 KIRPQVVLCN-GPG-----TCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQF 205 (226)
Q Consensus 143 k~kPdvVi~t-Gg~-----vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~ 205 (226)
.+.||++|+. ||+ .+.|++- -++-|-...++|-+|+-+ .|++| |=-|++-|.|..
T Consensus 252 ~e~PDv~igcvGGGSNfag~~yPfi~----d~l~g~~~~~fiAvep~a---~P~lT-~GeY~YD~gDta 312 (432)
T COG1350 252 GEDPDVIIGCVGGGSNFAGLTYPFIG----DKLRGKKETRFIAVEPKA---CPKLT-KGEYRYDFGDTA 312 (432)
T ss_pred CCCCCEEEEeccCCCccccccchhhh----hhhcCCceeEEEEeCCcc---CCccc-cceeeccCCchh
Confidence 3679999864 444 3445542 244443335889999998 58886 444556677763
No 381
>PRK08264 short chain dehydrogenase; Validated
Probab=27.17 E-value=1.1e+02 Score=25.02 Aligned_cols=34 Identities=18% Similarity=0.120 Sum_probs=19.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||||| =+.++++.|.++++. ++..++.
T Consensus 6 ~~~vlItGgsg~---iG~~la~~l~~~G~~-~V~~~~r 39 (238)
T PRK08264 6 GKVVLVTGANRG---IGRAFVEQLLARGAA-KVYAAAR 39 (238)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCcc-cEEEEec
Confidence 356777787765 234455566666652 3444443
No 382
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=27.12 E-value=95 Score=25.68 Aligned_cols=33 Identities=12% Similarity=-0.083 Sum_probs=21.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||+|| =+.+++++|.++++ +++.++.
T Consensus 5 ~k~vlItGas~g---IG~~ia~~l~~~G~--~vi~~~r 37 (248)
T TIGR01832 5 GKVALVTGANTG---LGQGIAVGLAEAGA--DIVGAGR 37 (248)
T ss_pred CCEEEEECCCch---HHHHHHHHHHHCCC--EEEEEcC
Confidence 356788888876 35667777777665 3555543
No 383
>PRK11872 antC anthranilate dioxygenase reductase; Provisional
Probab=26.95 E-value=1.2e+02 Score=27.41 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=22.6
Q ss_pred eEE-EEEecChhhHHHHHHHHHHhhhcCCC-CeEEEEEcC
Q 027253 45 LST-LIVLGSGGHTAEMMNLLSVLQMDRFT-PRFYIAAAT 82 (226)
Q Consensus 45 ~ki-liv~GtGGH~~p~lal~~~l~~~~~~-~~~~~~~~~ 82 (226)
.++ +|+|||| +.|++++++.+..++.. ...++.+..
T Consensus 210 ~~~vliagGtG--iaP~~s~l~~~~~~~~~~~v~l~~g~r 247 (340)
T PRK11872 210 RPLVFVAGGTG--LSAFLGMLDELAEQGCSPPVHLYYGVR 247 (340)
T ss_pred CcEEEEeCCcC--ccHHHHHHHHHHHcCCCCcEEEEEecC
Confidence 344 4558888 99999999987654322 234444443
No 384
>PRK06523 short chain dehydrogenase; Provisional
Probab=26.88 E-value=1e+02 Score=25.80 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=17.7
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
..+++|+||||| -+.++++.|.+++++
T Consensus 9 ~k~vlItGas~g---IG~~ia~~l~~~G~~ 35 (260)
T PRK06523 9 GKRALVTGGTKG---IGAATVARLLEAGAR 35 (260)
T ss_pred CCEEEEECCCCc---hhHHHHHHHHHCCCE
Confidence 467888898886 345566666665543
No 385
>PRK05993 short chain dehydrogenase; Provisional
Probab=26.88 E-value=3.9e+02 Score=22.62 Aligned_cols=31 Identities=26% Similarity=0.202 Sum_probs=18.7
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+++|+||||| =+.++++.|.+++++ ++.++.
T Consensus 6 ~vlItGasgg---iG~~la~~l~~~G~~--Vi~~~r 36 (277)
T PRK05993 6 SILITGCSSG---IGAYCARALQSDGWR--VFATCR 36 (277)
T ss_pred EEEEeCCCcH---HHHHHHHHHHHCCCE--EEEEEC
Confidence 5677788764 345566677666653 555443
No 386
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=26.82 E-value=1e+02 Score=25.47 Aligned_cols=35 Identities=11% Similarity=0.016 Sum_probs=23.4
Q ss_pred eEEEEE-ecChhhHHHH-HHHHHHhhhc-CCCCeEEEE
Q 027253 45 LSTLIV-LGSGGHTAEM-MNLLSVLQMD-RFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~-lal~~~l~~~-~~~~~~~~~ 79 (226)
+||+|+ ++.-|||..| -++++.+++. +.+.+++-+
T Consensus 1 ~kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v 38 (197)
T TIGR01755 1 VKVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRV 38 (197)
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 478999 7889999996 4556667653 555333333
No 387
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.75 E-value=1.2e+02 Score=22.46 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=25.6
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
+-.++|+-+..|++.+.+..++.+++++.. .+.++
T Consensus 53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~-vi~iT 87 (131)
T PF01380_consen 53 PDDLVIIISYSGETRELIELLRFAKERGAP-VILIT 87 (131)
T ss_dssp TTEEEEEEESSSTTHHHHHHHHHHHHTTSE-EEEEE
T ss_pred ccceeEeeeccccchhhhhhhHHHHhcCCe-EEEEe
Confidence 345666667888999999999999887643 44443
No 388
>PRK08309 short chain dehydrogenase; Provisional
Probab=26.74 E-value=1e+02 Score=25.16 Aligned_cols=31 Identities=19% Similarity=0.259 Sum_probs=20.5
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
|+++++|||| +. -++++.|.+++++ +.+.+.
T Consensus 1 m~vlVtGGtG--~g--g~la~~L~~~G~~--V~v~~R 31 (177)
T PRK08309 1 MHALVIGGTG--ML--KRVSLWLCEKGFH--VSVIAR 31 (177)
T ss_pred CEEEEECcCH--HH--HHHHHHHHHCcCE--EEEEEC
Confidence 6788999984 32 3578888777764 444443
No 389
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=26.72 E-value=1.3e+02 Score=26.28 Aligned_cols=29 Identities=14% Similarity=0.060 Sum_probs=19.7
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
++.++++|+||||+- +..+++.|.+++++
T Consensus 3 ~~~k~vlVtG~~G~I---G~~l~~~L~~~G~~ 31 (325)
T PLN02989 3 DGGKVVCVTGASGYI---ASWIVKLLLFRGYT 31 (325)
T ss_pred CCCCEEEEECCchHH---HHHHHHHHHHCCCE
Confidence 345788999998864 45566666666654
No 390
>PRK12828 short chain dehydrogenase; Provisional
Probab=26.69 E-value=1.5e+02 Score=24.08 Aligned_cols=32 Identities=13% Similarity=-0.074 Sum_probs=19.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+|||| ++ +..+++.|.++++. ++.+..
T Consensus 8 k~vlItGatg-~i--G~~la~~l~~~G~~--v~~~~r 39 (239)
T PRK12828 8 KVVAITGGFG-GL--GRATAAWLAARGAR--VALIGR 39 (239)
T ss_pred CEEEEECCCC-cH--hHHHHHHHHHCCCe--EEEEeC
Confidence 4677777775 44 45566777666654 455444
No 391
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=26.62 E-value=5.2e+02 Score=23.97 Aligned_cols=36 Identities=19% Similarity=0.145 Sum_probs=23.9
Q ss_pred hcCCcEEEecCCCcchhHHHHHHHHHHcC---CccceEEEEccCC
Q 027253 143 KIRPQVVLCNGPGTCIPLCVIAFLFKVIG---IRWSSIFYVESIA 184 (226)
Q Consensus 143 k~kPdvVi~tGg~vsvP~~lAa~lakllg---i~~~~iv~~Esna 184 (226)
..+||+|-++...+++... ++.+..+ + |+++...|.
T Consensus 126 ~~~~DiiH~hdw~~~~~~~---~l~~~~~~~~~---~~v~TiH~~ 164 (473)
T TIGR02095 126 GWQPDVVHAHDWHTALVPA---LLKAVYRPNPI---KTVFTIHNL 164 (473)
T ss_pred CCCCCEEEECCcHHHHHHH---HHHhhccCCCC---CEEEEcCCC
Confidence 3689999999976664333 2344444 5 888876654
No 392
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=26.56 E-value=1.6e+02 Score=26.97 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=28.2
Q ss_pred HHHHHhhHhcCC----cEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 135 THALWLMVKIRP----QVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 135 ~~a~~il~k~kP----dvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
-+....+++.++ |+||+-|||+..=++=++-.....|+ |.+.+=+
T Consensus 74 ~~~~~~l~~~~~~r~~d~IVaiGGG~v~D~ak~~A~~~~rg~---p~i~VPT 122 (354)
T cd08199 74 LKIVDALDAFGISRRREPVLAIGGGVLTDVAGLAASLYRRGT---PYVRIPT 122 (354)
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhcCCC---CEEEEcC
Confidence 344455666666 99999999988755533211134466 7766655
No 393
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=26.44 E-value=5.1e+02 Score=23.83 Aligned_cols=26 Identities=19% Similarity=0.071 Sum_probs=17.5
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
..+++++|+ |+ -++++++.|.+++++
T Consensus 5 ~k~v~iiG~-g~---~G~~~A~~l~~~G~~ 30 (450)
T PRK14106 5 GKKVLVVGA-GV---SGLALAKFLKKLGAK 30 (450)
T ss_pred CCEEEEECC-CH---HHHHHHHHHHHCCCE
Confidence 356777753 33 345899999888865
No 394
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=26.40 E-value=4.6e+02 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=23.5
Q ss_pred CeEEEEE--ecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 44 PLSTLIV--LGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 44 ~~kiliv--~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
.+-+++. |+|+ |.+.|++.+|...+ + +.++++.++
T Consensus 124 ~v~v~~~GDga~~qG~~~EalN~A~~~~---l-PvifvveNN 161 (300)
T PF00676_consen 124 GVVVCFFGDGATSQGDFHEALNLAALWK---L-PVIFVVENN 161 (300)
T ss_dssp EEEEEEEETGGGGSHHHHHHHHHHHHTT---T-SEEEEEEEE
T ss_pred eeEEEEecCcccccCccHHHHHHHhhcc---C-CeEEEEecC
Confidence 3556666 4666 88999999988753 2 467776543
No 395
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=26.38 E-value=4.6e+02 Score=24.69 Aligned_cols=41 Identities=15% Similarity=0.344 Sum_probs=26.2
Q ss_pred eEEEEEecCh---hhHHHHHHHHHHhhhcCCCCeEEEEEcCCcch
Q 027253 45 LSTLIVLGSG---GHTAEMMNLLSVLQMDRFTPRFYIAAATDNMS 86 (226)
Q Consensus 45 ~kiliv~GtG---GH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s 86 (226)
|+-+++.||+ |=|.=...|+..|+++++....+-. ..|..+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~-Gpd~~d 46 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV-GPDYID 46 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec-CCCccc
Confidence 5545554444 4688889999999988877444433 344443
No 396
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=26.16 E-value=57 Score=29.18 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHhhHhcCCcEEEecCCCcchhHH----------------HHHHHHHHcCCccceEEEEccCCc
Q 027253 138 LWLMVKIRPQVVLCNGPGTCIPLC----------------VIAFLFKVIGIRWSSIFYVESIAR 185 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~vsvP~~----------------lAa~lakllgi~~~~iv~~Esnar 185 (226)
..++++.|||+||-+-+|+.+=.| -.|-+++-.|. ++|++=+...
T Consensus 43 ~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga---~lVhiSTDyV 103 (281)
T COG1091 43 LEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGA---RLVHISTDYV 103 (281)
T ss_pred HHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCC---eEEEeecceE
Confidence 456778899999999999976322 11134455565 7777766653
No 397
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=26.14 E-value=1.2e+02 Score=25.81 Aligned_cols=44 Identities=14% Similarity=0.221 Sum_probs=25.8
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
.++-+.|||+||=+|-+-.......|-+.+++|. +.+++=++=+
T Consensus 26 eli~~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~-~~~VigiDId 69 (206)
T PF04989_consen 26 ELIWELKPDLIIETGIAHGGSLIFWASMLELLGG-KGKVIGIDID 69 (206)
T ss_dssp HHHHHH--SEEEEE--TTSHHHHHHHHHHHHTT----EEEEEES-
T ss_pred HHHHHhCCCeEEEEecCCCchHHHHHHHHHHhCC-CceEEEEeCC
Confidence 4667789999999999999888765544455532 2366666653
No 398
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=26.11 E-value=1.4e+02 Score=25.26 Aligned_cols=33 Identities=15% Similarity=-0.015 Sum_probs=20.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||+|| -+.++++.|.++++ ++.+++.
T Consensus 10 ~k~vlVtGas~g---iG~~ia~~l~~~G~--~V~~~~r 42 (278)
T PRK08277 10 GKVAVITGGGGV---LGGAMAKELARAGA--KVAILDR 42 (278)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCC--EEEEEeC
Confidence 356677788876 34556667766665 3555544
No 399
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=26.06 E-value=3.8e+02 Score=22.13 Aligned_cols=36 Identities=11% Similarity=0.035 Sum_probs=26.5
Q ss_pred CeEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+.|+++. .+.=.|.-...-++..|+..||+ +...|.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~--vi~lG~ 118 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFE--VIDLGR 118 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCE--EEECCC
Confidence 3577766 56678999899898899988886 344453
No 400
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.01 E-value=1.1e+02 Score=22.49 Aligned_cols=35 Identities=11% Similarity=0.134 Sum_probs=25.8
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
-.++++-+..|++.+++.+++.+++++. .++.++.
T Consensus 61 ~~~~i~iS~~g~~~~~~~~~~~a~~~g~--~iv~iT~ 95 (139)
T cd05013 61 GDVVIAISFSGETKETVEAAEIAKERGA--KVIAITD 95 (139)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHcCC--eEEEEcC
Confidence 3566778889999999999999888764 3444443
No 401
>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr
Probab=25.94 E-value=1e+02 Score=25.48 Aligned_cols=23 Identities=35% Similarity=0.445 Sum_probs=16.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~ 71 (226)
++|++||| +.|++++++++...+
T Consensus 107 vlIagG~G--iap~~~~l~~~~~~~ 129 (231)
T cd06215 107 LLLSAGSG--ITPMMSMARWLLDTR 129 (231)
T ss_pred EEEecCcC--cchHHHHHHHHHhcC
Confidence 44558887 788999998876543
No 402
>TIGR01369 CPSaseII_lrg carbamoyl-phosphate synthase, large subunit. In several thermophilic species (Methanobacterium thermoautotrophicum, Methanococcus jannaschii, Aquifex aeolicus), the large subunit appears split, at different points, into two separate genes.
Probab=25.84 E-value=3.5e+02 Score=28.58 Aligned_cols=31 Identities=6% Similarity=0.015 Sum_probs=19.1
Q ss_pred CCeEEEEEecChhhH-------HHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHT-------AEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~-------~p~lal~~~l~~~~~~ 73 (226)
.+.||++.||..--+ +-++.+++.+++.+++
T Consensus 553 ~~~kvlvlG~G~~rig~~~efd~~~v~~i~al~~~G~~ 590 (1050)
T TIGR01369 553 DKKKVLVLGSGPNRIGQGVEFDYCCVHAVLALRELGYE 590 (1050)
T ss_pred CCceEEEecCcccccccccccchHHHHHHHHHHhCCCE
Confidence 345777775433222 3357778888888875
No 403
>PRK12937 short chain dehydrogenase; Provisional
Probab=25.79 E-value=3.7e+02 Score=21.90 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=17.9
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
..+++|+||+||-- .++++.|.+++++
T Consensus 5 ~~~vlItG~~~~iG---~~la~~l~~~g~~ 31 (245)
T PRK12937 5 NKVAIVTGASRGIG---AAIARRLAADGFA 31 (245)
T ss_pred CCEEEEeCCCchHH---HHHHHHHHHCCCE
Confidence 35788889888753 4456667666654
No 404
>PRK06114 short chain dehydrogenase; Provisional
Probab=25.66 E-value=1.6e+02 Score=24.65 Aligned_cols=32 Identities=6% Similarity=-0.077 Sum_probs=21.4
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..++|+||||| =+.++++.|.+++++ ++++..
T Consensus 9 k~~lVtG~s~g---IG~~ia~~l~~~G~~--v~~~~r 40 (254)
T PRK06114 9 QVAFVTGAGSG---IGQRIAIGLAQAGAD--VALFDL 40 (254)
T ss_pred CEEEEECCCch---HHHHHHHHHHHCCCE--EEEEeC
Confidence 46777798887 556677777777653 555544
No 405
>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.
Probab=25.61 E-value=74 Score=24.59 Aligned_cols=19 Identities=32% Similarity=0.523 Sum_probs=12.9
Q ss_pred EEEEecChhhHHHHHHHHHHh
Q 027253 47 TLIVLGSGGHTAEMMNLLSVL 67 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l 67 (226)
++|+||+| +.+++.++.+|
T Consensus 5 vlvAGG~G--It~~l~~l~~l 23 (156)
T PF08030_consen 5 VLVAGGSG--ITPILPILRDL 23 (156)
T ss_dssp EEEEEGGG--HHHHHHHHHHH
T ss_pred EEEecCcC--HHHHHHHHHHH
Confidence 34459999 56777777665
No 406
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=25.60 E-value=1.6e+02 Score=26.43 Aligned_cols=44 Identities=16% Similarity=0.165 Sum_probs=26.7
Q ss_pred HHHHhhHhc---CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 136 HALWLMVKI---RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 136 ~a~~il~k~---kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
+....+++. |+|+||+-|||..+=++=++-.....++ |++.+=+
T Consensus 69 ~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~~~---p~i~VPT 115 (344)
T TIGR01357 69 RLYDQLLEAGLDRSSTIIALGGGVVGDLAGFVAATYMRGI---RFIQVPT 115 (344)
T ss_pred HHHHHHHHcCCCCCCEEEEEcChHHHHHHHHHHHHHccCC---CEEEecC
Confidence 444455554 4699999999988755532211123455 7776655
No 407
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=25.55 E-value=78 Score=27.20 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=18.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
-||.+++|+||-. .+...+.+.+ +|++|.-.
T Consensus 171 ~rVav~~GsG~~~------i~~a~~~g~D--~~ITGd~~ 201 (241)
T PF01784_consen 171 KRVAVCGGSGGSF------IEEAAEAGAD--VYITGDIK 201 (241)
T ss_dssp EEEEEECSSSGGG------HHHHHHTTSS--EEEESS--
T ss_pred cEEEEEcccCccH------HHHHHhCCCe--EEEEccCc
Confidence 5788889999922 2222233444 88877653
No 408
>PRK06182 short chain dehydrogenase; Validated
Probab=25.51 E-value=1.2e+02 Score=25.74 Aligned_cols=31 Identities=26% Similarity=0.175 Sum_probs=19.4
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
.+++|+||||| -+.++++.|.+++++ ++.++
T Consensus 4 k~vlItGasgg---iG~~la~~l~~~G~~--V~~~~ 34 (273)
T PRK06182 4 KVALVTGASSG---IGKATARRLAAQGYT--VYGAA 34 (273)
T ss_pred CEEEEECCCCh---HHHHHHHHHHHCCCE--EEEEe
Confidence 46777788776 355577777666653 44444
No 409
>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form
Probab=25.49 E-value=1.5e+02 Score=24.59 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=17.8
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDR 71 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~ 71 (226)
.+++++ ||+| +.|++++++++...+
T Consensus 108 ~~~vliagG~G--iap~~~~~~~~~~~~ 133 (235)
T cd06217 108 DPVVLLAGGSG--IVPLMSMIRYRRDLG 133 (235)
T ss_pred ceEEEEecCcC--ccHHHHHHHHHHhcC
Confidence 445544 8888 779999999876543
No 410
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=25.43 E-value=4.9e+02 Score=23.27 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=15.8
Q ss_pred HHHHHHHhh--HhcCCcEEEecCCCc
Q 027253 133 ATTHALWLM--VKIRPQVVLCNGPGT 156 (226)
Q Consensus 133 ~~~~a~~il--~k~kPdvVi~tGg~v 156 (226)
+++++...+ ..++||+|+++.+..
T Consensus 73 ~~~~~~~~~~~~~~~pdvi~~h~~~~ 98 (396)
T cd03818 73 AVARALLALRAKGFRPDVIVAHPGWG 98 (396)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCccc
Confidence 344444444 346899999998764
No 411
>KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=25.43 E-value=1.4e+02 Score=26.54 Aligned_cols=47 Identities=15% Similarity=0.174 Sum_probs=27.2
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhh
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFE 94 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e 94 (226)
+||+++||||== +-||.+.++++++++.-|+.-+....+.....+.|
T Consensus 2 ~kIlVtGg~GLV---GsAi~~vv~~q~~~~e~wvf~~skd~DLt~~a~t~ 48 (315)
T KOG1431|consen 2 KKILVTGGTGLV---GSAIVKVVQEQGFDDENWVFIGSKDADLTNLADTR 48 (315)
T ss_pred ceEEEecCCchH---HHHHHHHHHhcCCCCcceEEeccccccccchHHHH
Confidence 688888999832 33555566667665455555444444444443333
No 412
>PRK10799 metal-binding protein; Provisional
Probab=25.33 E-value=1.2e+02 Score=26.20 Aligned_cols=34 Identities=9% Similarity=0.046 Sum_probs=20.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
-.||.+++|+||-. +.-+ .+.+. .+|++|.-+..
T Consensus 165 i~rVAi~~GsG~~~---i~~a---~~~ga--D~~ITGd~k~h 198 (247)
T PRK10799 165 VQRVAWCTGGGQSF---IDSA---ARFGV--DAFITGEVSEQ 198 (247)
T ss_pred ccEEEEECCchHHH---HHHH---HHcCC--CEEEECCcchH
Confidence 36688999999842 2222 22333 47888876544
No 413
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=25.26 E-value=57 Score=28.52 Aligned_cols=36 Identities=11% Similarity=0.253 Sum_probs=21.5
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHHHHHcC-CccceEEEEcc
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIG-IRWSSIFYVES 182 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~lakllg-i~~~~iv~~Es 182 (226)
+-+...+||+|+++|.-.+.-+ ..+..+ + |+|+.=-
T Consensus 53 ~~l~~~~~DlIi~~gt~aa~~~-----~~~~~~~i---PVVf~~V 89 (294)
T PF04392_consen 53 RKLKAQKPDLIIAIGTPAAQAL-----AKHLKDDI---PVVFCGV 89 (294)
T ss_dssp HHHCCTS-SEEEEESHHHHHHH-----HHH-SS-S----EEEECE
T ss_pred HHHhcCCCCEEEEeCcHHHHHH-----HHhcCCCc---EEEEEec
Confidence 3456779999999987644221 134455 5 9988765
No 414
>cd06186 NOX_Duox_like_FAD_NADP NADPH oxidase (NOX) catalyzes the generation of reactive oxygen species (ROS) such as superoxide and hydrogen peroxide. ROS were originally identified as bactericidal agents in phagocytes, but are now also implicated in cell signaling and metabolism. NOX has a 6-alpha helix heme-binding transmembrane domain fused to a flavoprotein with the nucleotide binding domain located in the cytoplasm. Duox enzymes link a peroxidase domain to the NOX domain via a single transmembrane and EF-hand Ca2+ binding sites. The flavoprotein module has a ferredoxin like FAD/NADPH binding domain. In classical phagocytic NOX2, electron transfer occurs from NADPH to FAD to the heme of cytb to oxygen leading to superoxide formation.
Probab=25.13 E-value=1e+02 Score=25.03 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=17.3
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~ 70 (226)
-+++++ ||+| +.|++.+++.+..+
T Consensus 107 ~~~vliagG~G--Itp~~s~l~~l~~~ 131 (210)
T cd06186 107 DNVLLVAGGSG--ITFVLPILRDLLRR 131 (210)
T ss_pred CeEEEEecccc--HhhhHHHHHHHHhh
Confidence 355544 8888 78899998887643
No 415
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=25.11 E-value=1.6e+02 Score=27.45 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=23.9
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhh---cC-CCCeEEEEEcCCc
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQM---DR-FTPRFYIAAATDN 84 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~---~~-~~~~~~~~~~~d~ 84 (226)
.+++++ |||| +.|++++++.+.. .+ ..+..++.|..+.
T Consensus 268 ~~lllIagGtG--IAP~~s~l~~~~~~~~~~~~~~v~L~~G~Rt~ 310 (411)
T TIGR03224 268 SSIMMICTGTG--SAPMRAMTERRRRRRDHGEGGKLMLFFGARTK 310 (411)
T ss_pred CCEEEEecccC--cHHHHHHHHHHHHHhhcCCCCCEEEEEecCcc
Confidence 355555 8999 9999999998753 11 1234555554433
No 416
>PLN02285 methionyl-tRNA formyltransferase
Probab=25.03 E-value=4.4e+02 Score=23.88 Aligned_cols=22 Identities=14% Similarity=0.407 Sum_probs=15.3
Q ss_pred hhHhcCCcEEEecCCCcchhHH
Q 027253 140 LMVKIRPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 140 il~k~kPdvVi~tGg~vsvP~~ 161 (226)
.+++.+||++|+.|=+--+|--
T Consensus 88 ~l~~~~~Dliv~~~~~~ilp~~ 109 (334)
T PLN02285 88 ALRELQPDLCITAAYGNILPQK 109 (334)
T ss_pred HHHhhCCCEEEhhHhhhhcCHH
Confidence 4567899999988655555543
No 417
>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor. This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.
Probab=25.03 E-value=5.4e+02 Score=23.58 Aligned_cols=111 Identities=6% Similarity=-0.046 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEE---EeecCccccchhHHHHHHHHHH
Q 027253 57 TAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFM---QIYRSREVGQSYVTSVWTTLLA 133 (226)
Q Consensus 57 ~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~---~i~r~r~~~~~~~~~~~~~l~~ 133 (226)
..++.++++.+++.+|. .+-++...|.......+.+.+.+.. . ++.+. .++..-.. .......++
T Consensus 157 ~~qa~ai~~li~~~~w~-~Vaii~~~d~yG~~~~~~f~~~~~~-~-----GicIa~~e~~~~~~~~-~~~~~~~~~---- 224 (403)
T cd06361 157 FYQTKAMAHLIKKSGWN-WVGIIITDDDYGRSALETFIIQAEA-N-----GVCIAFKEILPASLSD-NTKLNRIIR---- 224 (403)
T ss_pred HhHHHHHHHHHHHcCCc-EEEEEEecCchHHHHHHHHHHHHHH-C-----CeEEEEEEEecCccCc-chhHHHHHH----
Confidence 46777778777766776 4555566666666555555443322 2 23332 22221110 110111111
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCC
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esna 184 (226)
...+++++.+||+||..|.+.....++- -++-.|+ +.+.+--|+|+
T Consensus 225 --~~~~~ik~~~a~vVvv~~~~~~~~~l~~--~a~~~g~-~~~wigs~~w~ 270 (403)
T cd06361 225 --TTEKIIEENKVNVIVVFARQFHVFLLFN--KAIERNI-NKVWIASDNWS 270 (403)
T ss_pred --HHHHHHhcCCCeEEEEEeChHHHHHHHH--HHHHhCC-CeEEEEECccc
Confidence 2234566788999999888755444322 2566777 33455555554
No 418
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=25.01 E-value=4.8e+02 Score=23.01 Aligned_cols=102 Identities=13% Similarity=0.154 Sum_probs=52.0
Q ss_pred EEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcce-EEEEeecCccccchh
Q 027253 46 STLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSA-QFMQIYRSREVGQSY 123 (226)
Q Consensus 46 kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~-~~~~i~r~r~~~~~~ 123 (226)
||||+ .+.=|=+--+..+.+.|++.-.+.++.++...... ..+ +.. ..+ .+..++..+.. ..+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~--~l~---~~~---------p~vd~vi~~~~~~~~-~~~ 65 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETI--PIL---SEN---------PDINALYGLDRKKAK-AGE 65 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChH--HHH---hcC---------CCccEEEEeChhhhc-chH
Confidence 56777 67777666666777777765445567666554322 111 110 012 23333332210 011
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCC
Q 027253 124 VTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGI 172 (226)
Q Consensus 124 ~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi 172 (226)
.. +...+.-.+.+++.++|++|..=+. .. +++++++.|.
T Consensus 66 -~~----~~~~~~l~~~lr~~~yD~vidl~~~--~~---s~ll~~l~~a 104 (344)
T TIGR02201 66 -RK----LANQFHLIKVLRANRYDLVVNLTDQ--WM---VAILVKLLNA 104 (344)
T ss_pred -HH----HHHHHHHHHHHHhCCCCEEEECCcc--hH---HHHHHHhcCC
Confidence 11 1233444566788999999987332 12 2244666665
No 419
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=24.96 E-value=36 Score=29.69 Aligned_cols=18 Identities=22% Similarity=0.124 Sum_probs=15.0
Q ss_pred cChhhHHHHHHHHHHhhh
Q 027253 52 GSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 52 GtGGH~~p~lal~~~l~~ 69 (226)
=||||.+|+..++-.+..
T Consensus 65 iSGaH~NPAVT~a~~~~~ 82 (238)
T KOG0223|consen 65 ISGAHFNPAVTLAFAVGG 82 (238)
T ss_pred ccccccCHHHHHHHHHhC
Confidence 389999999999877654
No 420
>PRK06179 short chain dehydrogenase; Provisional
Probab=24.93 E-value=1.2e+02 Score=25.50 Aligned_cols=26 Identities=15% Similarity=0.046 Sum_probs=17.4
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.+++|+||||| =+.++++.|.+++++
T Consensus 5 ~~vlVtGasg~---iG~~~a~~l~~~g~~ 30 (270)
T PRK06179 5 KVALVTGASSG---IGRATAEKLARAGYR 30 (270)
T ss_pred CEEEEecCCCH---HHHHHHHHHHHCCCE
Confidence 46777788876 355667777766653
No 421
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.90 E-value=1.7e+02 Score=23.74 Aligned_cols=32 Identities=19% Similarity=0.092 Sum_probs=18.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
++++|+|+||| + +..+++.|.+++++ +..+..
T Consensus 6 ~~ilItGasg~-i--G~~l~~~l~~~g~~--v~~~~r 37 (246)
T PRK05653 6 KTALVTGASRG-I--GRAIALRLAADGAK--VVIYDS 37 (246)
T ss_pred CEEEEECCCcH-H--HHHHHHHHHHCCCE--EEEEeC
Confidence 57888888754 2 34455566566654 444443
No 422
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=24.78 E-value=1.3e+02 Score=28.66 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=32.2
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
.||+|++|+|.-=.-++.+|..|...+++..++..+..+
T Consensus 60 ~~VlVlcG~GNNGGDGlv~AR~L~~~G~~V~v~~~~~~~ 98 (462)
T PLN03049 60 RRVLALCGPGNNGGDGLVAARHLHHFGYKPSICYPKRTD 98 (462)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHCCCceEEEEECCCC
Confidence 478999999999999999999999889886666665443
No 423
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=24.62 E-value=1e+02 Score=26.97 Aligned_cols=116 Identities=17% Similarity=0.126 Sum_probs=57.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchhH
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSYV 124 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~~ 124 (226)
||||++=--|=|---+.++.+.|++. . .++++.-....|..- ..+.- ........+. .+ . |
T Consensus 1 M~ILlTNDDGi~a~Gi~aL~~~l~~~-~--~V~VvAP~~~qSg~g-----~ait~-----~~pl~~~~~~-~~-~---~- 61 (250)
T PRK00346 1 MRILLTNDDGIHAPGIRALAEALREL-A--DVTVVAPDRERSGAS-----HSLTL-----TRPLRVEKVD-NG-F---Y- 61 (250)
T ss_pred CeEEEECCCCCCChhHHHHHHHHHhC-C--CEEEEeCCCCCcCCc-----ccccC-----CCCeEEEEec-CC-e---E-
Confidence 67888865665655567788888764 2 466665433222110 00000 0112222221 11 0 1
Q ss_pred HHHHHHHHHHHHHHHhhHhcCCcEEEe---cCCCcchh-----HHHHHHHHHHcCCccceEEEEcc
Q 027253 125 TSVWTTLLATTHALWLMVKIRPQVVLC---NGPGTCIP-----LCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 125 ~~~~~~l~~~~~a~~il~k~kPdvVi~---tGg~vsvP-----~~lAa~lakllgi~~~~iv~~Es 182 (226)
..=.+=.-++.-++..+.+.+||+||+ .|...+.- .+-||.-|.+.|+ |-+=+=+
T Consensus 62 ~v~GTPaDcV~~gl~~l~~~~pDlVvSGIN~G~N~g~~v~ySGTVgAA~ea~~~Gi---PaiA~S~ 124 (250)
T PRK00346 62 AVDGTPTDCVHLALNGLLDPKPDLVVSGINHGANLGDDVLYSGTVAAAMEGALLGI---PAIAVSL 124 (250)
T ss_pred EECCcHHHHHHHHHHhhccCCCCEEEeCCccCCCCCCCeeccHHHHHHHHHHhcCC---CeEEEec
Confidence 000112235566677666779999997 23333221 2234455788998 6554433
No 424
>PRK07023 short chain dehydrogenase; Provisional
Probab=24.52 E-value=1.2e+02 Score=25.02 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=17.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
|+++|+||||| =+.++++.|.+++++
T Consensus 2 ~~vlItGasgg---iG~~ia~~l~~~G~~ 27 (243)
T PRK07023 2 VRAIVTGHSRG---LGAALAEQLLQPGIA 27 (243)
T ss_pred ceEEEecCCcc---hHHHHHHHHHhCCCE
Confidence 57888888885 445566666666654
No 425
>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=24.47 E-value=1.8e+02 Score=26.09 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=16.9
Q ss_pred EEEEecChhhHHHHHHHHHHhhhc
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMD 70 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~ 70 (226)
++|+|||| +.|++++++.+...
T Consensus 113 lliagG~G--ItP~~s~l~~~~~~ 134 (352)
T TIGR02160 113 VAVAAGSG--ITPMLSIAETVLAA 134 (352)
T ss_pred EEEecccc--HhHHHHHHHHHHhc
Confidence 44558997 89999999987543
No 426
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=24.24 E-value=1.5e+02 Score=23.94 Aligned_cols=41 Identities=7% Similarity=0.226 Sum_probs=28.7
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
++.+. +-+.||.+.+++++.+.++.......+++.|...+.
T Consensus 48 ~i~i~-INSpGG~v~~g~~i~~~i~~~~~~v~t~~~G~aaSa 88 (182)
T PF00574_consen 48 PINIY-INSPGGDVDAGLAIYDAIRSSKAPVTTVVLGLAASA 88 (182)
T ss_dssp EEEEE-EEECEBCHHHHHHHHHHHHHSSSEEEEEEEEEEETH
T ss_pred eEEEE-EcCCCCccHHHHHHHHHHHhcCCCeEEEEeCccccc
Confidence 34444 378999999999999999876544445665654433
No 427
>PRK07806 short chain dehydrogenase; Provisional
Probab=24.21 E-value=1.3e+02 Score=24.74 Aligned_cols=33 Identities=12% Similarity=0.010 Sum_probs=20.3
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+.+++|+||||| =+.++++.|..++++ ++.++.
T Consensus 6 ~k~vlItGasgg---iG~~l~~~l~~~G~~--V~~~~r 38 (248)
T PRK07806 6 GKTALVTGSSRG---IGADTAKILAGAGAH--VVVNYR 38 (248)
T ss_pred CcEEEEECCCCc---HHHHHHHHHHHCCCE--EEEEeC
Confidence 357888888876 345556677666654 444443
No 428
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=24.16 E-value=2.8e+02 Score=25.14 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=23.1
Q ss_pred CeEEEEEecCh-hhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSG-GHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtG-GH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
...++|+|+|| |=|.-+-++++.+.++ .+++.+.+
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip~~---~ri~tiEd 195 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIPAI---ERLITVED 195 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCCCC---CeEEEecC
Confidence 36788888887 5666667888777542 35555443
No 429
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=24.13 E-value=2.3e+02 Score=25.62 Aligned_cols=25 Identities=12% Similarity=0.287 Sum_probs=17.9
Q ss_pred eEEEEEecCh-hhHHHHHHHHHHhhh
Q 027253 45 LSTLIVLGSG-GHTAEMMNLLSVLQM 69 (226)
Q Consensus 45 ~kiliv~GtG-GH~~p~lal~~~l~~ 69 (226)
--++++|.|| |=+.-+-+++..+.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 3456668777 778888888887754
No 430
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=24.10 E-value=1.4e+02 Score=29.00 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=24.4
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
+.|+||+-|||+..=++=++-...+.|+ |.+.+=+
T Consensus 269 r~D~IIAIGGGsv~D~AKfvA~~y~rGi---~~i~vPT 303 (542)
T PRK14021 269 RSDAIVGLGGGAATDLAGFVAATWMRGI---RYVNCPT 303 (542)
T ss_pred CCcEEEEEcChHHHHHHHHHHHHHHcCC---CEEEeCC
Confidence 7999999999988755533211135787 7777655
No 431
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=24.06 E-value=55 Score=24.49 Aligned_cols=22 Identities=9% Similarity=0.276 Sum_probs=10.9
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 027253 3 KMDDFYFYIMTIIATSVAIFLI 24 (226)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~ 24 (226)
+++.-+..++++++++.++.++
T Consensus 60 ~~~iili~lls~v~IlVily~I 81 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAI 81 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhh
Confidence 3444455555555554444443
No 432
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=24.01 E-value=3.1e+02 Score=25.44 Aligned_cols=24 Identities=17% Similarity=0.144 Sum_probs=17.6
Q ss_pred EEEEEecCh-hhHHHHHHHHHHhhh
Q 027253 46 STLIVLGSG-GHTAEMMNLLSVLQM 69 (226)
Q Consensus 46 kiliv~GtG-GH~~p~lal~~~l~~ 69 (226)
-++++|+|| |=+.-+-++++.+.+
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 366778777 667777888888754
No 433
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=23.89 E-value=3.7e+02 Score=22.48 Aligned_cols=50 Identities=18% Similarity=0.104 Sum_probs=27.9
Q ss_pred HHHHHHHHhhHhc-CCcEEEe---cCCCcchh-----HHHHHHHHHHcCCccceEEEEccCC
Q 027253 132 LATTHALWLMVKI-RPQVVLC---NGPGTCIP-----LCVIAFLFKVIGIRWSSIFYVESIA 184 (226)
Q Consensus 132 ~~~~~a~~il~k~-kPdvVi~---tGg~vsvP-----~~lAa~lakllgi~~~~iv~~Esna 184 (226)
-++.-++..+.+. +||+||+ .|..++.- .+-||.-|.+.|+ |-+=+=...
T Consensus 77 Dcv~~al~~~~~~~~pDLViSGiN~G~N~g~~v~~SGTVgAA~ea~~~Gi---paIA~S~~~ 135 (196)
T PF01975_consen 77 DCVKLALDGLLPDKKPDLVISGINHGANLGTDVLYSGTVGAAMEAALRGI---PAIAVSLDS 135 (196)
T ss_dssp HHHHHHHHCTSTTSS-SEEEEEEEES---GGGGGG-HHHHHHHHHHHTTS---EEEEEEEES
T ss_pred HHHHHHHHhhhccCCCCEEEECCCCCccCCcCcccccHHHHHHHHHHcCC---CeEEEeccc
Confidence 3566667666654 5999997 34444322 2334566788998 766554443
No 434
>PRK06703 flavodoxin; Provisional
Probab=23.88 E-value=1.5e+02 Score=23.06 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=21.1
Q ss_pred eEEEEE-ecChhhHHHH-HHHHHHhhhcCCC
Q 027253 45 LSTLIV-LGSGGHTAEM-MNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~-lal~~~l~~~~~~ 73 (226)
||++|+ ++.-|||..+ -+|++.++..+..
T Consensus 2 mkv~IiY~S~tGnT~~iA~~ia~~l~~~g~~ 32 (151)
T PRK06703 2 AKILIAYASMSGNTEDIADLIKVSLDAFDHE 32 (151)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhcCCc
Confidence 578888 7777888776 5677778766654
No 435
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=23.78 E-value=5.2e+02 Score=23.00 Aligned_cols=38 Identities=21% Similarity=0.278 Sum_probs=22.2
Q ss_pred eEEEEE-ecChhh----------------HHHHHHHHHHhhhcCCCCeEEEEEcCCc
Q 027253 45 LSTLIV-LGSGGH----------------TAEMMNLLSVLQMDRFTPRFYIAAATDN 84 (226)
Q Consensus 45 ~kiliv-~GtGGH----------------~~p~lal~~~l~~~~~~~~~~~~~~~d~ 84 (226)
.+++++ .|.||+ +.=++.+.+.|+.++++ ++.+-++|.
T Consensus 56 ~~~IvIDpGHGG~DpGAvg~~G~~EKdi~L~IA~~l~~~L~~~G~~--V~lTR~~D~ 110 (287)
T PRK10319 56 KRVVMLDPGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGID--ARLTRSGDT 110 (287)
T ss_pred CeEEEEECCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHHCCCE--EEEeCCCCC
Confidence 445555 899987 23345555666666654 566555554
No 436
>PF08288 PIGA: PIGA (GPI anchor biosynthesis); InterPro: IPR013234 This domain is found on phosphatidylinositol N-acetylglucosaminyltransferase proteins. These proteins are involved in GPI anchor biosynthesis and are associated with the disease paroxysmal nocturnal haemoglobinuria [].; GO: 0006506 GPI anchor biosynthetic process
Probab=23.66 E-value=3.1e+02 Score=20.35 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=30.3
Q ss_pred HHHHHHhhHhcCCcEEEecCCCcchhHHHHH-HHHHHcCCccceEEEEcc
Q 027253 134 TTHALWLMVKIRPQVVLCNGPGTCIPLCVIA-FLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa-~lakllgi~~~~iv~~Es 182 (226)
+---+.|+.+|+.|+|=+-+...+. +--+ +-|+.+|+ |+|+=+-
T Consensus 39 ~pl~R~IlirE~I~IVHgH~a~S~l--~hE~i~hA~~mGl---ktVfTDH 83 (90)
T PF08288_consen 39 FPLLRNILIRERIDIVHGHQAFSTL--CHEAILHARTMGL---KTVFTDH 83 (90)
T ss_pred hHHHHHHHHHcCeeEEEeehhhhHH--HHHHHHHHHhCCC---cEEeecc
Confidence 3334457779999999887776554 2222 33899999 9988653
No 437
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=23.52 E-value=4.3e+02 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=19.8
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
.+++|+||||| =+.++++.|.+++++ ++.+.
T Consensus 7 ~~vlItGas~~---iG~~ia~~l~~~G~~--v~~~~ 37 (257)
T PRK07067 7 KVALLTGAASG---IGEAVAERYLAEGAR--VVIAD 37 (257)
T ss_pred CEEEEeCCCch---HHHHHHHHHHHcCCE--EEEEc
Confidence 45777787774 356777788777754 44443
No 438
>KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.50 E-value=4.7e+02 Score=24.03 Aligned_cols=33 Identities=24% Similarity=0.156 Sum_probs=21.7
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
-|++++|||-| -.++++.+++.++.+ +.++..+
T Consensus 34 ~hi~itggS~g---lgl~la~e~~~~ga~--Vti~ar~ 66 (331)
T KOG1210|consen 34 RHILITGGSSG---LGLALALECKREGAD--VTITARS 66 (331)
T ss_pred ceEEEecCcch---hhHHHHHHHHHccCc--eEEEecc
Confidence 67888776655 467788788776643 5555543
No 439
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=23.44 E-value=88 Score=28.45 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=21.0
Q ss_pred HHHHHHhhHhcC--CcEEEecCCCcchhHH
Q 027253 134 TTHALWLMVKIR--PQVVLCNGPGTCIPLC 161 (226)
Q Consensus 134 ~~~a~~il~k~k--PdvVi~tGg~vsvP~~ 161 (226)
+.++...+++.+ +|+||+-|||.++=.+
T Consensus 67 v~~~~~~~~~~~~~~D~IIaiGGGSviD~a 96 (355)
T TIGR03405 67 LDGLYARLWGDEGACDLVIALGGGSVIDTA 96 (355)
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCccHHHHH
Confidence 445555666655 9999999999988665
No 440
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=23.38 E-value=1.2e+02 Score=26.49 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=20.9
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRF 72 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~ 72 (226)
|||++.||| .|+..+++.|.+.++
T Consensus 1 m~ILvlgGT----tE~r~la~~L~~~g~ 24 (249)
T PF02571_consen 1 MKILVLGGT----TEGRKLAERLAEAGY 24 (249)
T ss_pred CEEEEEech----HHHHHHHHHHHhcCC
Confidence 799999997 599999999988765
No 441
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=23.30 E-value=4.3e+02 Score=21.87 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=21.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+||+|| =+.++++.|.++++ .++.+..
T Consensus 13 k~ilItGa~g~---IG~~la~~l~~~G~--~V~~~~r 44 (259)
T PRK08213 13 KTALVTGGSRG---LGLQIAEALGEAGA--RVVLSAR 44 (259)
T ss_pred CEEEEECCCch---HHHHHHHHHHHcCC--EEEEEeC
Confidence 57788888874 35667778777665 3555444
No 442
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=23.18 E-value=2.1e+02 Score=22.97 Aligned_cols=19 Identities=0% Similarity=-0.246 Sum_probs=11.7
Q ss_pred HHhhHhcCCcEEEecCCCc
Q 027253 138 LWLMVKIRPQVVLCNGPGT 156 (226)
Q Consensus 138 ~~il~k~kPdvVi~tGg~v 156 (226)
.+.+....+|..|.+++-.
T Consensus 120 ~~~~~~~~l~~~i~~SSis 138 (181)
T PF08659_consen 120 HEALENRPLDFFILFSSIS 138 (181)
T ss_dssp HHHHTTTTTSEEEEEEEHH
T ss_pred HHHhhcCCCCeEEEECChh
Confidence 3444456788887766543
No 443
>TIGR02706 P_butyryltrans phosphate butyryltransferase. Members of this family are phosphate butyryltransferase, also called phosphotransbutyrylase. In general, this enzyme is found in butyrate-producing anaerobic bacteria, encoded next to the gene for butyrate kinase. Together, these two enzymes represent what may be the less common of two pathways for butyrate production from butyryl-CoA. The alternative is transfer of the CoA group to acetate by butyryl-CoA:acetate CoA transferase. Cutoffs for this model are set such that the homolog from Thermotoga maritima, whose activity on butyryl-CoA is only 30 % of its activity with acetyl-CoA, scores in the zone between trusted and noice cutoffs.
Probab=23.15 E-value=5.3e+02 Score=22.84 Aligned_cols=102 Identities=12% Similarity=0.088 Sum_probs=53.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcchhhHHHHhhhhhhhhcccCCcceEEEEeecCccccchh
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNMSLQKARVFEDSLLHKKVIKGSSAQFMQIYRSREVGQSY 123 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~s~~~~~~~e~~~~~~~~~~~~~~~~~~i~r~r~~~~~~ 123 (226)
+.||.+..|.=-++-++..- +.++++- ..+++|+.+.++.. . + +.+.....++++ . ....
T Consensus 13 ~~ri~~~~~~d~~vl~A~~~---~~~~~~~-~~iLvG~~~~I~~~-~---~-----~~~l~~~~ieIi--~-~~~~---- 72 (294)
T TIGR02706 13 MKTVAVAVAQDEPVLEAVKE---AKEHGIA-RAILVGDEEKINEI-A---K-----KIGMNLDDVEIV--N-APSP---- 72 (294)
T ss_pred CCeEEEeCCCCHHHHHHHHH---HHHCCCc-eEEEECCHHHHHHH-H---H-----HcCCCccCcEEE--C-CCCc----
Confidence 56888888665555444333 3444443 56777876655321 1 1 111100122222 1 1111
Q ss_pred HHHHHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCcc
Q 027253 124 VTSVWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRW 174 (226)
Q Consensus 124 ~~~~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~ 174 (226)
. .++..++.++++-+-|.+++-|-.++ -++.+ .+.+.-|+++
T Consensus 73 ~-------~s~~~a~~lv~~G~aD~~vsg~~~T~-a~l~~-~l~~~~Gi~~ 114 (294)
T TIGR02706 73 K-------KAALLAVRLVSTGKADMLMKGLVDTA-TFLRS-VLNKEVGLRT 114 (294)
T ss_pred H-------HHHHHHHHHHHCCCCCEEEeCCcCHH-HHHHH-HhhhccCCCC
Confidence 0 15667888999999999996442554 22222 4455667644
No 444
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=22.97 E-value=2e+02 Score=23.82 Aligned_cols=34 Identities=9% Similarity=-0.055 Sum_probs=20.0
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+..+++|+||+||- +.++++.|.++++. ++.+..
T Consensus 11 ~~k~vlItG~~g~i---G~~la~~l~~~G~~--Vi~~~r 44 (247)
T PRK08945 11 KDRIILVTGAGDGI---GREAALTYARHGAT--VILLGR 44 (247)
T ss_pred CCCEEEEeCCCchH---HHHHHHHHHHCCCc--EEEEeC
Confidence 34678888888753 34555566665653 444443
No 445
>PRK06973 nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=22.95 E-value=2.4e+02 Score=24.49 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=26.9
Q ss_pred CCCeEEEEEecC-----hhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 42 PQPLSTLIVLGS-----GGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 42 ~~~~kiliv~Gt-----GGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
+.++||.+.||| =||+.-+.++.+.+. .+ +++++.+.
T Consensus 19 ~~~~~IgifGGSFdPiH~GHl~ia~~~~~~l~---ld-~v~~iP~~ 60 (243)
T PRK06973 19 ARPRRIGILGGTFDPIHDGHLALARRFADVLD---LT-ELVLIPAG 60 (243)
T ss_pred CCCceEEEECCCCCCCcHHHHHHHHHHHHHcC---CC-EEEEEECC
Confidence 467899999987 699887777777654 33 67777654
No 446
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=22.93 E-value=1.1e+02 Score=25.22 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=23.6
Q ss_pred eEEEEE-ecChhhHHHHHH-HHHHhhh-cCCCCeEEEE
Q 027253 45 LSTLIV-LGSGGHTAEMMN-LLSVLQM-DRFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~la-l~~~l~~-~~~~~~~~~~ 79 (226)
|||+|+ ++..|||..+.. +++.+++ .+.+.+++-+
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 489999 676899999755 5666765 5555333433
No 447
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=22.91 E-value=1.7e+02 Score=28.84 Aligned_cols=36 Identities=14% Similarity=0.075 Sum_probs=21.6
Q ss_pred CCCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 42 PQPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 42 ~~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
.++++|+|+|||| +=+-.+++.|.+++...+++.+.
T Consensus 4 ~~~~~VLVTGatG---fIG~~lv~~Ll~~g~~~~V~~~d 39 (668)
T PLN02260 4 YEPKNILITGAAG---FIASHVANRLIRNYPDYKIVVLD 39 (668)
T ss_pred CCCCEEEEECCCc---HHHHHHHHHHHHhCCCCEEEEEe
Confidence 4568999999987 33445566665543333444443
No 448
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=22.88 E-value=1.4e+02 Score=26.69 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 145 RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 145 kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
++|+||+-|||..+=.+=+ +|...++ |++.+=+-
T Consensus 75 ~~d~iIaiGGGsv~D~aK~--vA~~~~~---p~i~vPTt 108 (331)
T cd08174 75 NVDAVVGIGGGKVIDVAKY--AAFLRGI---PLSVPTTN 108 (331)
T ss_pred CCCEEEEeCCcHHHHHHHH--HHhhcCC---CEEEecCc
Confidence 6999999999988765532 2445676 77776554
No 449
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=22.82 E-value=3.1e+02 Score=20.01 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=21.8
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
++.+.+++.|..-+..++..+++.+++
T Consensus 3 l~~~~~~~~h~lg~~~~~~~l~~~G~~ 29 (125)
T cd02065 3 LGATVGGDVHDIGKNIVAIALRDNGFE 29 (125)
T ss_pred EEEEcCCchhhHHHHHHHHHHHHCCCE
Confidence 344478889999999999999888876
No 450
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=22.80 E-value=1.1e+02 Score=26.16 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=29.2
Q ss_pred hhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEc
Q 027253 140 LMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVE 181 (226)
Q Consensus 140 il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~E 181 (226)
.+.+..||-|+-+||+.-+|.+-- ++.+.+++ |+...+
T Consensus 189 ~l~~~~~~~v~LtGG~a~ipgl~e-~l~~~lg~---~v~~~~ 226 (239)
T TIGR02529 189 HIEGQGVKDLYLVGGACSFSGFAD-VFEKQLGL---NVIKPQ 226 (239)
T ss_pred HHHhCCCCEEEEECchhcchhHHH-HHHHHhCC---CcccCC
Confidence 334568999999999999998754 67788898 775433
No 451
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=22.79 E-value=2.7e+02 Score=22.23 Aligned_cols=47 Identities=21% Similarity=0.223 Sum_probs=34.7
Q ss_pred HHHHHHHhhHh---cCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 133 ATTHALWLMVK---IRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 133 ~~~~a~~il~k---~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
...+.+..+.+ ..|+-|+.+||+.--|...- .+|.+++. |+...|+.
T Consensus 134 ~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q-~~Advl~~---~V~~~~~~ 183 (198)
T PF02782_consen 134 SLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQ-ILADVLGR---PVVRPEVE 183 (198)
T ss_dssp HHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHH-HHHHHHTS---EEEEESSS
T ss_pred HHHHhhhhccccccccceeeEeccccccChHHHH-HHHHHhCC---ceEeCCCC
Confidence 33444445533 46899999999998787655 77899997 99998874
No 452
>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E. coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F
Probab=22.75 E-value=2.2e+02 Score=24.96 Aligned_cols=32 Identities=22% Similarity=0.304 Sum_probs=20.9
Q ss_pred EEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 47 TLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 47 iliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
++|+|||| +.|+++++++... . .+..++.|..
T Consensus 159 vlIAgGtG--IaP~~s~l~~~~~-~-~~v~L~~g~r 190 (289)
T cd06201 159 ILIGAGTG--IAPLAGFIRANAA-R-RPMHLYWGGR 190 (289)
T ss_pred EEEecCcC--HHHHHHHHHhhhc-c-CCEEEEEEec
Confidence 45558998 9999999988632 2 2244454543
No 453
>COG2268 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.74 E-value=1.1e+02 Score=30.10 Aligned_cols=61 Identities=11% Similarity=0.242 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC---------CCC-CCeEEEEEecChhhHHHHHHHHHHh
Q 027253 7 FYFYIMTIIATSVAIFLIRLLHVLYLTGKSRRL---------KSP-QPLSTLIVLGSGGHTAEMMNLLSVL 67 (226)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~---------~~~-~~~kiliv~GtGGH~~p~lal~~~l 67 (226)
||+-.+..+++++++++|.+....|....+..- +++ .....-++-|+|=|.+|...-...+
T Consensus 11 ~~~~~ivvv~i~~ilv~if~~~~~y~~a~~~~aLI~~g~~~g~~~~~g~~~~vV~gGg~~v~Pi~q~~~r~ 81 (548)
T COG2268 11 LMLIAIVVVVILVILVLIFFGKRFYIIARPNEALIRTGSKLGSKDEAGGGQKVVRGGGAIVMPIFQTIERM 81 (548)
T ss_pred HHHHHHHHHHHHHHHHHHHHhheeEEecCCCceEEEeccccCCcccccCCccEEecCceEEecceeeeEEe
Confidence 444444444444444555444455554444310 111 2455556666666788877665543
No 454
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.66 E-value=2.5e+02 Score=27.26 Aligned_cols=17 Identities=24% Similarity=0.495 Sum_probs=12.3
Q ss_pred HHHHHHhhHhcCCcEEE
Q 027253 134 TTHALWLMVKIRPQVVL 150 (226)
Q Consensus 134 ~~~a~~il~k~kPdvVi 150 (226)
+-.+++.+.|.+||+|+
T Consensus 316 fa~~LRa~LRqDPDvIm 332 (500)
T COG2804 316 FARALRAILRQDPDVIM 332 (500)
T ss_pred HHHHHHHHhccCCCeEE
Confidence 34567778889999843
No 455
>PRK05420 aquaporin Z; Provisional
Probab=22.66 E-value=40 Score=29.00 Aligned_cols=18 Identities=22% Similarity=0.052 Sum_probs=15.5
Q ss_pred cChhhHHHHHHHHHHhhh
Q 027253 52 GSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 52 GtGGH~~p~lal~~~l~~ 69 (226)
=||||.+|+..++..+.+
T Consensus 57 iSG~h~NPAvtl~~~~~~ 74 (231)
T PRK05420 57 ISGGHFNPAVSVGLWAGG 74 (231)
T ss_pred cccccCCHHHHHHHHHhC
Confidence 479999999999988764
No 456
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=22.59 E-value=1.6e+02 Score=25.99 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=24.6
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHH-HHHcCCccceEEEEcc
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFL-FKVIGIRWSSIFYVES 182 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~l-akllgi~~~~iv~~Es 182 (226)
+.+..++||++|-.+|..+.|.=-.|.= .+-.|+ |+|+|-.
T Consensus 53 ~~~~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~i---P~IvI~D 94 (276)
T PF01993_consen 53 KMLKEWDPDFVIVISPNAAAPGPTKAREMLSAKGI---PCIVISD 94 (276)
T ss_dssp HHHHHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS----EEEEEE
T ss_pred HHHHhhCCCEEEEECCCCCCCCcHHHHHHHHhCCC---CEEEEcC
Confidence 3456778999999999999987644321 223577 9888855
No 457
>PRK07856 short chain dehydrogenase; Provisional
Probab=22.57 E-value=1.3e+02 Score=25.10 Aligned_cols=26 Identities=12% Similarity=0.043 Sum_probs=16.3
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRF 72 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~ 72 (226)
..+++|+|||||= +.++++.|.++++
T Consensus 6 ~k~~lItGas~gI---G~~la~~l~~~g~ 31 (252)
T PRK07856 6 GRVVLVTGGTRGI---GAGIARAFLAAGA 31 (252)
T ss_pred CCEEEEeCCCchH---HHHHHHHHHHCCC
Confidence 4677888888874 3445555555554
No 458
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=22.56 E-value=2e+02 Score=25.96 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=28.4
Q ss_pred HHHHHHhhHhcC---CcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 134 TTHALWLMVKIR---PQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 134 ~~~a~~il~k~k---PdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+-+....+++.+ .|+||+-|||+..=++=++-.....|+ |++.+=+-
T Consensus 71 v~~~~~~~~~~~~~r~d~IIaiGGGsv~D~ak~vA~~~~rgi---p~i~VPTT 120 (345)
T cd08195 71 LEKLYDALLEAGLDRKSLIIALGGGVVGDLAGFVAATYMRGI---DFIQIPTT 120 (345)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECChHHHhHHHHHHHHHhcCC---CeEEcchh
Confidence 334445556654 499999999988755532111134566 77766553
No 459
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=22.55 E-value=1.4e+02 Score=28.06 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=28.8
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc-CCccCCcchhhhh
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES-IARVKRLSLSGLL 195 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es-narv~~~sltgKl 195 (226)
..+++.+||++|++.... .+|+-+|| |.+.+-= ..|....|..|-+
T Consensus 349 ~~l~~~~pDllig~s~~~--------~~A~k~gI---P~vr~g~pi~~~~~~Gy~Ga~ 395 (422)
T TIGR02015 349 EAVLEFEPDLAIGTTPLV--------QFAKEHGI---PALYFTNLISARPLMGPAGAG 395 (422)
T ss_pred HHHhhCCCCEEEcCCcch--------HHHHHcCC---CEEEecchhhhhhcccHHHHH
Confidence 566788999999885541 23678899 7776331 1333345665544
No 460
>PLN02214 cinnamoyl-CoA reductase
Probab=22.47 E-value=1.8e+02 Score=25.84 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=18.2
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
+.++++|+||||+ =+..+++.|.+++++
T Consensus 9 ~~~~vlVTGatGf---IG~~l~~~L~~~G~~ 36 (342)
T PLN02214 9 AGKTVCVTGAGGY---IASWIVKILLERGYT 36 (342)
T ss_pred CCCEEEEECCCcH---HHHHHHHHHHHCcCE
Confidence 3467888899873 344555666666654
No 461
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=22.30 E-value=1.6e+02 Score=25.26 Aligned_cols=38 Identities=26% Similarity=0.423 Sum_probs=23.1
Q ss_pred HhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 139 WLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 139 ~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
-.+.+.+||+|+++.++.. +-.+. .+ .-.|+ |+++.+.
T Consensus 66 E~il~l~PDlVi~~~~~~~-~~~~~-~L-~~~gi---~v~~~~~ 103 (260)
T PRK03379 66 ERIVALKPDLVLAWRGGNA-ERQVD-QL-ASLGI---KVMWVDA 103 (260)
T ss_pred HHHHhcCCCEEEEecCCCc-HHHHH-HH-HHCCC---CEEEeCC
Confidence 4456779999999754322 22222 22 34777 9998863
No 462
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=22.16 E-value=6.2e+02 Score=23.25 Aligned_cols=36 Identities=11% Similarity=0.183 Sum_probs=24.0
Q ss_pred hcCCcEEEecCCCcchhHHHHHHHHHH------cCCccceEEEEccCC
Q 027253 143 KIRPQVVLCNGPGTCIPLCVIAFLFKV------IGIRWSSIFYVESIA 184 (226)
Q Consensus 143 k~kPdvVi~tGg~vsvP~~lAa~lakl------lgi~~~~iv~~Esna 184 (226)
..+||+|-++...+++...++ .+. .++ |+++.--|.
T Consensus 127 ~~~pDviH~hd~~t~~~~~~l---~~~~~~~~~~~~---~~v~tiH~~ 168 (476)
T cd03791 127 GWKPDIIHCHDWHTGLVPALL---KEKYADPFFKNI---KTVFTIHNL 168 (476)
T ss_pred CCCCcEEEECchHHHHHHHHH---HHhhccccCCCC---CEEEEeCCC
Confidence 379999999988766544432 333 255 888866553
No 463
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=22.16 E-value=2e+02 Score=23.55 Aligned_cols=34 Identities=9% Similarity=-0.040 Sum_probs=19.6
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
.++++|+|||| ++ +.++++.|.++++. ++.++..
T Consensus 6 ~~~ilItGasg-~i--G~~l~~~l~~~g~~--V~~~~r~ 39 (251)
T PRK12826 6 GRVALVTGAAR-GI--GRAIAVRLAADGAE--VIVVDIC 39 (251)
T ss_pred CCEEEEcCCCC-cH--HHHHHHHHHHCCCE--EEEEeCC
Confidence 35677777764 44 45556666666653 4555443
No 464
>PRK08643 acetoin reductase; Validated
Probab=22.10 E-value=1.9e+02 Score=23.98 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=18.1
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+++|+||||| =+.++++.|.++++ .+++++.
T Consensus 4 ~~lItGas~g---iG~~la~~l~~~G~--~v~~~~r 34 (256)
T PRK08643 4 VALVTGAGQG---IGFAIAKRLVEDGF--KVAIVDY 34 (256)
T ss_pred EEEEECCCCh---HHHHHHHHHHHCCC--EEEEEeC
Confidence 5677788876 23445556665664 3555543
No 465
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=22.07 E-value=2.1e+02 Score=30.19 Aligned_cols=67 Identities=16% Similarity=0.143 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccEEE
Q 027253 127 VWTTLLATTHALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQFF 206 (226)
Q Consensus 127 ~~~~l~~~~~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~ 206 (226)
+-++++++-. ++.....||++-||=-.++|.+.| ++-+++-++.-+++-.+.. .||.+ |||.|.-.
T Consensus 751 i~~~L~~LcE---vv~~Y~CDVLLLTGRPSrlPgvqa-lfr~~~pvPp~RIv~l~~Y-------~tg~W---YPF~~~~r 816 (1002)
T PF07520_consen 751 ICKTLRALCE---VVHHYDCDVLLLTGRPSRLPGVQA-LFRHLLPVPPDRIVPLHGY-------RTGNW---YPFNDQGR 816 (1002)
T ss_pred HHHHHHHHHH---HHHHhCCCEEEEcCCccccHHHHH-HHHHhCCCCcccEEecCCe-------eeccc---ccCCCCCc
Confidence 3344444444 445678999999999999999988 6667888877778877766 33444 57766543
Q ss_pred e
Q 027253 207 V 207 (226)
Q Consensus 207 v 207 (226)
+
T Consensus 817 I 817 (1002)
T PF07520_consen 817 I 817 (1002)
T ss_pred C
Confidence 3
No 466
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=22.07 E-value=3.1e+02 Score=22.48 Aligned_cols=24 Identities=13% Similarity=0.411 Sum_probs=17.4
Q ss_pred EEEEecCh-hhHHHHHHHHHHhhhc
Q 027253 47 TLIVLGSG-GHTAEMMNLLSVLQMD 70 (226)
Q Consensus 47 iliv~GtG-GH~~p~lal~~~l~~~ 70 (226)
++++|.|| |=+.-+.+++..+...
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~ 28 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKN 28 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhc
Confidence 56778777 6677777788887643
No 467
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=22.03 E-value=1.4e+02 Score=25.91 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=17.7
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
+.++++|+|||| ++. ..+++.|.+++++
T Consensus 3 ~~~~ilVtGatG-fIG--~~l~~~L~~~g~~ 30 (322)
T PLN02662 3 EGKVVCVTGASG-YIA--SWLVKLLLQRGYT 30 (322)
T ss_pred CCCEEEEECChH-HHH--HHHHHHHHHCCCE
Confidence 457898888885 333 3356666666654
No 468
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=22.01 E-value=1.8e+02 Score=21.45 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=26.5
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+--++|+.+..|.+.+.+..++..++++.. .+.+++.
T Consensus 46 ~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~-vi~iT~~ 82 (126)
T cd05008 46 EDTLVIAISQSGETADTLAALRLAKEKGAK-TVAITNV 82 (126)
T ss_pred CCcEEEEEeCCcCCHHHHHHHHHHHHcCCe-EEEEECC
Confidence 445677777888888999999999887743 4444433
No 469
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=21.99 E-value=1.6e+02 Score=25.59 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=0.0
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
.++|++.|||+ |+..+++.|.+.++. +++...++
T Consensus 2 ~~~IlvlgGT~----egr~la~~L~~~g~~--v~~Svat~ 35 (248)
T PRK08057 2 MPRILLLGGTS----EARALARALAAAGVD--IVLSLAGR 35 (248)
T ss_pred CceEEEEechH----HHHHHHHHHHhCCCe--EEEEEccC
No 470
>PRK06125 short chain dehydrogenase; Provisional
Probab=21.99 E-value=1.9e+02 Score=24.12 Aligned_cols=33 Identities=15% Similarity=0.081 Sum_probs=18.9
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||+|| + +.++++.|.++++ .+.+++.
T Consensus 7 ~k~vlItG~~~g-i--G~~ia~~l~~~G~--~V~~~~r 39 (259)
T PRK06125 7 GKRVLITGASKG-I--GAAAAEAFAAEGC--HLHLVAR 39 (259)
T ss_pred CCEEEEeCCCch-H--HHHHHHHHHHcCC--EEEEEeC
Confidence 356777787766 3 3445556666564 3455443
No 471
>PRK08219 short chain dehydrogenase; Provisional
Probab=21.99 E-value=1.5e+02 Score=23.84 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=18.9
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
++++|+|||| .+ +.++++.|.++ ++ ++.+..
T Consensus 4 ~~vlVtG~~g-~i--G~~l~~~l~~~-~~--V~~~~r 34 (227)
T PRK08219 4 PTALITGASR-GI--GAAIARELAPT-HT--LLLGGR 34 (227)
T ss_pred CEEEEecCCc-HH--HHHHHHHHHhh-CC--EEEEeC
Confidence 4677778876 33 56667777665 43 455544
No 472
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.78 E-value=4.5e+02 Score=21.55 Aligned_cols=32 Identities=19% Similarity=0.255 Sum_probs=19.2
Q ss_pred EEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 46 STLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 46 kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
.++|+||||| =+.++++.|.+++++ +..++..
T Consensus 4 ~vlItG~sg~---iG~~la~~L~~~g~~--vi~~~r~ 35 (256)
T PRK12745 4 VALVTGGRRG---IGLGIARALAAAGFD--LAINDRP 35 (256)
T ss_pred EEEEeCCCch---HHHHHHHHHHHCCCE--EEEEecC
Confidence 4677788774 445566667666653 4555543
No 473
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=21.76 E-value=5.6e+02 Score=22.63 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=24.2
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
+..+++|+|.|+|= +.++++.|.+++++ +..++..
T Consensus 5 ~~~~~lITGASsGI---G~~~A~~lA~~g~~--liLvaR~ 39 (265)
T COG0300 5 KGKTALITGASSGI---GAELAKQLARRGYN--LILVARR 39 (265)
T ss_pred CCcEEEEECCCchH---HHHHHHHHHHCCCE--EEEEeCc
Confidence 34677888988884 55678888888875 4444543
No 474
>cd08184 Fe-ADH3 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the iron-containing alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron or zinc ions. Members of this family are mainly found in bacteria.
Probab=21.74 E-value=96 Score=28.31 Aligned_cols=28 Identities=11% Similarity=0.146 Sum_probs=21.7
Q ss_pred HHHHHHhhHhc---CCcEEEecCCCcchhHH
Q 027253 134 TTHALWLMVKI---RPQVVLCNGPGTCIPLC 161 (226)
Q Consensus 134 ~~~a~~il~k~---kPdvVi~tGg~vsvP~~ 161 (226)
+-++....++. ++|+||+-|||.++=.+
T Consensus 67 v~~~~~~~~~~~~~~~D~IIaiGGGS~iD~A 97 (347)
T cd08184 67 IDALTAQVKSFDGKLPCAIVGIGGGSTLDVA 97 (347)
T ss_pred HHHHHHHHHhhCCCCCCEEEEeCCcHHHHHH
Confidence 33555667766 89999999999887665
No 475
>PRK08226 short chain dehydrogenase; Provisional
Probab=21.74 E-value=4.7e+02 Score=21.67 Aligned_cols=34 Identities=12% Similarity=0.042 Sum_probs=20.7
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAAT 82 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~ 82 (226)
..+++|+||||| =+.++++.|.+++++ ++.++.+
T Consensus 6 ~~~~lItG~s~g---iG~~la~~l~~~G~~--Vv~~~r~ 39 (263)
T PRK08226 6 GKTALITGALQG---IGEGIARVFARHGAN--LILLDIS 39 (263)
T ss_pred CCEEEEeCCCCh---HHHHHHHHHHHCCCE--EEEecCC
Confidence 356777788764 344566677766654 5555543
No 476
>PRK07060 short chain dehydrogenase; Provisional
Probab=21.74 E-value=1.7e+02 Score=23.95 Aligned_cols=33 Identities=21% Similarity=0.008 Sum_probs=19.5
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+||+|| -+..+++.+.+++++ +.+++.
T Consensus 9 ~~~~lItGa~g~---iG~~~a~~l~~~g~~--V~~~~r 41 (245)
T PRK07060 9 GKSVLVTGASSG---IGRACAVALAQRGAR--VVAAAR 41 (245)
T ss_pred CCEEEEeCCcch---HHHHHHHHHHHCCCE--EEEEeC
Confidence 357777777765 344455566666653 555554
No 477
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=21.71 E-value=5e+02 Score=24.36 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=21.3
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.||.|.|+||..=.+.+.+.....+ +++
T Consensus 2 k~VaILGsTGSIG~~tL~vi~~~p~-~f~ 29 (385)
T PRK05447 2 KRITILGSTGSIGTQTLDVIRRNPD-RFR 29 (385)
T ss_pred ceEEEEcCChHHHHHHHHHHHhCcc-ccE
Confidence 4678889999999999998876543 343
No 478
>PRK12746 short chain dehydrogenase; Provisional
Probab=21.69 E-value=4.6e+02 Score=21.55 Aligned_cols=27 Identities=19% Similarity=-0.015 Sum_probs=16.9
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
..+++|+||||| -+.++++.|.++++.
T Consensus 6 ~~~ilItGasg~---iG~~la~~l~~~G~~ 32 (254)
T PRK12746 6 GKVALVTGASRG---IGRAIAMRLANDGAL 32 (254)
T ss_pred CCEEEEeCCCch---HHHHHHHHHHHCCCE
Confidence 357777788876 344555666666643
No 479
>PHA03164 hypothetical protein; Provisional
Probab=21.60 E-value=89 Score=22.59 Aligned_cols=25 Identities=32% Similarity=0.579 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Q 027253 5 DDFYFYIMTIIATSVAIFLIRLLHV 29 (226)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~r~~~~ 29 (226)
.+|-|.++|-++++.+++++.++++
T Consensus 56 ktftFlvLtgLaIamILfiifvlyv 80 (88)
T PHA03164 56 KTFTFLVLTGLAIAMILFIIFVLYV 80 (88)
T ss_pred heeehHHHHHHHHHHHHHHHHHHHh
Confidence 3555666677777666666666654
No 480
>PLN02846 digalactosyldiacylglycerol synthase
Probab=21.46 E-value=4e+02 Score=25.52 Aligned_cols=25 Identities=4% Similarity=-0.078 Sum_probs=19.8
Q ss_pred HHHHHhhHhcCCcEEEecCCCcchh
Q 027253 135 THALWLMVKIRPQVVLCNGPGTCIP 159 (226)
Q Consensus 135 ~~a~~il~k~kPdvVi~tGg~vsvP 159 (226)
.+..+.+.+++||+|-.-.|++-.-
T Consensus 106 ~~i~~~l~~~~pDVIHv~tP~~LG~ 130 (462)
T PLN02846 106 GDISETIPDEEADIAVLEEPEHLTW 130 (462)
T ss_pred HHHHHHHHhcCCCEEEEcCchhhhh
Confidence 4566788899999999999985543
No 481
>PRK06484 short chain dehydrogenase; Validated
Probab=21.38 E-value=6.8e+02 Score=23.40 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=20.1
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..++|+||++| =+.++++.|.++++ .+++++.
T Consensus 6 k~~lITGas~g---IG~aia~~l~~~G~--~V~~~~r 37 (520)
T PRK06484 6 RVVLVTGAAGG---IGRAACQRFARAGD--QVVVADR 37 (520)
T ss_pred eEEEEECCCcH---HHHHHHHHHHHCCC--EEEEEeC
Confidence 45666688776 34557777877765 3555543
No 482
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=21.28 E-value=4.4e+02 Score=21.17 Aligned_cols=17 Identities=18% Similarity=0.088 Sum_probs=12.7
Q ss_pred hHhcCCcEEEecCCCcc
Q 027253 141 MVKIRPQVVLCNGPGTC 157 (226)
Q Consensus 141 l~k~kPdvVi~tGg~vs 157 (226)
+...++|+|+-+++...
T Consensus 61 ~~~~~~d~vi~~a~~~~ 77 (236)
T PF01370_consen 61 LEKANIDVVIHLAAFSS 77 (236)
T ss_dssp HHHHTESEEEEEBSSSS
T ss_pred ccccCceEEEEeecccc
Confidence 33448999999998863
No 483
>PLN02834 3-dehydroquinate synthase
Probab=21.25 E-value=2.2e+02 Score=26.96 Aligned_cols=46 Identities=13% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHhhHhcCCc---EEEecCCCcchhHHHHHHHHHHcCCccceEEEEcc
Q 027253 134 TTHALWLMVKIRPQ---VVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVES 182 (226)
Q Consensus 134 ~~~a~~il~k~kPd---vVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Es 182 (226)
+-++...+++.++| +||+-|||+..=++=++-.....|+ |++.+=+
T Consensus 149 v~~~~~~l~~~~~dr~~~VIAiGGGsv~D~ak~~A~~y~rgi---plI~VPT 197 (433)
T PLN02834 149 LMKVFDKALESRLDRRCTFVALGGGVIGDMCGFAAASYQRGV---NFVQIPT 197 (433)
T ss_pred HHHHHHHHHhcCCCcCcEEEEECChHHHHHHHHHHHHhcCCC---CEEEECC
Confidence 33445566666666 9999999988866632211234466 7666554
No 484
>PLN00184 aquaporin NIP1; Provisional
Probab=21.17 E-value=49 Score=29.77 Aligned_cols=17 Identities=18% Similarity=0.124 Sum_probs=15.0
Q ss_pred ChhhHHHHHHHHHHhhh
Q 027253 53 SGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 53 tGGH~~p~lal~~~l~~ 69 (226)
||||.+|+..++..+..
T Consensus 109 SGaH~NPAVTla~al~g 125 (296)
T PLN00184 109 SGAHINPAVTIAFASCG 125 (296)
T ss_pred CccccCHHHHHHHHHhC
Confidence 79999999999988754
No 485
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=21.13 E-value=1.8e+02 Score=25.08 Aligned_cols=38 Identities=16% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCCeEEE--EE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEE
Q 027253 42 PQPLSTL--IV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAA 80 (226)
Q Consensus 42 ~~~~kil--iv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~ 80 (226)
++.+|++ ++ ||-=+|...+.+|++..++++.. .+|+..
T Consensus 27 ~~~lHl~GLlSdGGVHSh~~Hl~al~~~a~~~gv~-~V~vH~ 67 (223)
T PF06415_consen 27 GGRLHLMGLLSDGGVHSHIDHLFALIKLAKKQGVK-KVYVHA 67 (223)
T ss_dssp T--EEEEEEESS-SSS--HHHHHHHHHHHHHTT-S-EEEEEE
T ss_pred CCeEEEEEEecCCCccccHHHHHHHHHHHHHcCCC-EEEEEE
Confidence 4568885 44 66667999999999998888765 566654
No 486
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=21.11 E-value=2.1e+02 Score=26.00 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=27.3
Q ss_pred HHHHHhhHhc---CCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccC
Q 027253 135 THALWLMVKI---RPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 135 ~~a~~il~k~---kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
-+....+++. |+|+||+-|||...=++=++-.....|+ |++.+=+-
T Consensus 79 ~~~~~~~~~~~~~r~d~IIavGGGsv~D~aK~iA~~~~~gi---p~i~IPTT 127 (358)
T PRK00002 79 EKIYDALLEAGLDRSDTLIALGGGVIGDLAGFAAATYMRGI---RFIQVPTT 127 (358)
T ss_pred HHHHHHHHHcCCCCCCEEEEEcCcHHHHHHHHHHHHhcCCC---CEEEcCch
Confidence 3444455554 4699999999988766533211123455 76666543
No 487
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=21.08 E-value=4.9e+02 Score=21.65 Aligned_cols=32 Identities=16% Similarity=0.106 Sum_probs=20.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
.+++|+|||||= +.++++.|.+++++ +++++.
T Consensus 7 k~vlVtGas~gI---G~~ia~~l~~~G~~--V~~~~r 38 (263)
T PRK06200 7 QVALITGGGSGI---GRALVERFLAEGAR--VAVLER 38 (263)
T ss_pred CEEEEeCCCchH---HHHHHHHHHHCCCE--EEEEeC
Confidence 466777887752 45567777776654 555543
No 488
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=21.06 E-value=1.3e+02 Score=25.62 Aligned_cols=38 Identities=13% Similarity=0.190 Sum_probs=29.0
Q ss_pred EEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCCcc
Q 027253 48 LIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATDNM 85 (226)
Q Consensus 48 liv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d~~ 85 (226)
+.+-+.||+...+++|.+.++.......++..|..-++
T Consensus 62 lyINSpGG~V~aG~AIydtm~~ik~~V~ti~~G~AaSm 99 (200)
T COG0740 62 LYINSPGGSVTAGLAIYDTMQFIKPPVSTICMGQAASM 99 (200)
T ss_pred EEEeCCCcccchhHHHHHHHHhcCCCeEEEEecHHHhH
Confidence 34489999999999999999876666566666654444
No 489
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=21.04 E-value=3.7e+02 Score=24.50 Aligned_cols=62 Identities=21% Similarity=0.209 Sum_probs=41.9
Q ss_pred HHHHhhHhcCCcEEEecCCCcchhHHHHHHHHHHcCCccceEEEEccCCccCCcchhhhhhcccCCccEEEeechhh
Q 027253 136 HALWLMVKIRPQVVLCNGPGTCIPLCVIAFLFKVIGIRWSSIFYVESIARVKRLSLSGLLLYKLCIADQFFVQWPQL 212 (226)
Q Consensus 136 ~a~~il~k~kPdvVi~tGg~vsvP~~lAa~lakllgi~~~~iv~~Esnarv~~~sltgKll~~~~~ad~~~vq~e~~ 212 (226)
..+.++.+++|++|+..|+-.. + +. ..|-.|+ +++.+-+ ++..+-+.. .-=+|.+++|=-|.
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~-~--~~--~lk~~Gi---~v~~~v~-----s~~~A~~a~--~~GaD~vVaqG~EA 134 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPD-Q--AR--ALEAIGI---STYLHVP-----SPGLLKQFL--ENGARKFIFEGREC 134 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChH-H--HH--HHHHCCC---EEEEEeC-----CHHHHHHHH--HcCCCEEEEecCcC
Confidence 3467788899999998887543 2 22 2455687 7765443 377887777 56699988875443
No 490
>KOG4417 consensus Predicted endonuclease [General function prediction only]
Probab=21.01 E-value=71 Score=27.66 Aligned_cols=38 Identities=24% Similarity=0.343 Sum_probs=27.9
Q ss_pred hcCCcEEEecCCCcc--hhHHHHHHHHHHcCCccceEEEEccC
Q 027253 143 KIRPQVVLCNGPGTC--IPLCVIAFLFKVIGIRWSSIFYVESI 183 (226)
Q Consensus 143 k~kPdvVi~tGg~vs--vP~~lAa~lakllgi~~~~iv~~Esn 183 (226)
+++||++++-|-|.- .-+.+||.++-+.|+ |+|=+--|
T Consensus 113 ~fr~dvilvDGnG~lHprGfGlACHlGvL~~l---p~iGVaKN 152 (261)
T KOG4417|consen 113 EFRPDVILVDGNGELHPRGFGLACHLGVLSGL---PSIGVAKN 152 (261)
T ss_pred CccccEEEEcCCceEcccccchhhhhhHhcCC---Cccchhcc
Confidence 468999998777654 446788888889998 76654444
No 491
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=20.98 E-value=1.7e+02 Score=29.54 Aligned_cols=36 Identities=17% Similarity=0.187 Sum_probs=25.0
Q ss_pred eEEEEE-ecChhhHHHHHHHHHHhhhcCCCCeEEEEEcCC
Q 027253 45 LSTLIV-LGSGGHTAEMMNLLSVLQMDRFTPRFYIAAATD 83 (226)
Q Consensus 45 ~kiliv-~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~~d 83 (226)
-+++++ ||+| +.|++.+++.+.+++.. ..++.+..+
T Consensus 99 ~~~llvaGG~G--iaPl~~l~~~l~~~~~~-v~l~~g~r~ 135 (752)
T PRK12778 99 GTVVCAGGGVG--VAPMLPIVKALKAAGNR-VITILGGRS 135 (752)
T ss_pred CeEEEEECCEe--HHHHHHHHHHHHHCCCe-EEEEeccCC
Confidence 356655 8887 99999999998776543 445555443
No 492
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=20.89 E-value=1.8e+02 Score=23.53 Aligned_cols=34 Identities=12% Similarity=0.155 Sum_probs=20.2
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
+..+++++||||| -+.++++.|..++. ++.+++.
T Consensus 27 ~~~~vlVlGgtG~---iG~~~a~~l~~~g~--~V~l~~R 60 (194)
T cd01078 27 KGKTAVVLGGTGP---VGQRAAVLLAREGA--RVVLVGR 60 (194)
T ss_pred CCCEEEEECCCCH---HHHHHHHHHHHCCC--EEEEEcC
Confidence 3478999999875 23345555555553 4555543
No 493
>PRK05875 short chain dehydrogenase; Provisional
Probab=20.86 E-value=2e+02 Score=24.23 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=21.2
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+|+||| =+.++++.|.+++++ ++.+..
T Consensus 7 ~k~vlItGasg~---IG~~la~~l~~~G~~--V~~~~r 39 (276)
T PRK05875 7 DRTYLVTGGGSG---IGKGVAAGLVAAGAA--VMIVGR 39 (276)
T ss_pred CCEEEEECCCcH---HHHHHHHHHHHCCCe--EEEEeC
Confidence 367888888877 355666677666653 455443
No 494
>PTZ00016 aquaglyceroporin; Provisional
Probab=20.85 E-value=49 Score=29.63 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=15.3
Q ss_pred cChhhHHHHHHHHHHhhh
Q 027253 52 GSGGHTAEMMNLLSVLQM 69 (226)
Q Consensus 52 GtGGH~~p~lal~~~l~~ 69 (226)
=||||.+|+..++..+..
T Consensus 104 iSG~h~NPAVTla~~l~g 121 (294)
T PTZ00016 104 ISGGHLNPAVTLGNAVFG 121 (294)
T ss_pred cCcCccCHHHHHHHHHhc
Confidence 479999999999988754
No 495
>PLN02650 dihydroflavonol-4-reductase
Probab=20.82 E-value=1.8e+02 Score=25.69 Aligned_cols=28 Identities=21% Similarity=0.003 Sum_probs=18.4
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
+.++++|+||||. =+-.+++.|.+++++
T Consensus 4 ~~k~iLVTGatGf---IGs~l~~~L~~~G~~ 31 (351)
T PLN02650 4 QKETVCVTGASGF---IGSWLVMRLLERGYT 31 (351)
T ss_pred CCCEEEEeCCcHH---HHHHHHHHHHHCCCE
Confidence 4568999999883 444455666666654
No 496
>PRK06198 short chain dehydrogenase; Provisional
Probab=20.70 E-value=2.2e+02 Score=23.59 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=19.5
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEEEc
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIAAA 81 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~~~ 81 (226)
..+++|+|+||| +. ..+++.|.++++. .++.++.
T Consensus 6 ~k~vlItGa~g~-iG--~~la~~l~~~G~~-~V~~~~r 39 (260)
T PRK06198 6 GKVALVTGGTQG-LG--AAIARAFAERGAA-GLVICGR 39 (260)
T ss_pred CcEEEEeCCCch-HH--HHHHHHHHHCCCC-eEEEEcC
Confidence 356777788776 43 4455566555543 2555443
No 497
>PLN02778 3,5-epimerase/4-reductase
Probab=20.66 E-value=74 Score=27.94 Aligned_cols=28 Identities=21% Similarity=-0.038 Sum_probs=17.0
Q ss_pred CCeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 43 QPLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 43 ~~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.+||++|+|||| +=+-.+++.|.+++++
T Consensus 8 ~~~kiLVtG~tG---fiG~~l~~~L~~~g~~ 35 (298)
T PLN02778 8 ATLKFLIYGKTG---WIGGLLGKLCQEQGID 35 (298)
T ss_pred CCCeEEEECCCC---HHHHHHHHHHHhCCCE
Confidence 458999998886 2223344555555654
No 498
>PLN02240 UDP-glucose 4-epimerase
Probab=20.49 E-value=1.4e+02 Score=26.29 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=17.4
Q ss_pred CeEEEEEecChhhHHHHHHHHHHhhhcCCC
Q 027253 44 PLSTLIVLGSGGHTAEMMNLLSVLQMDRFT 73 (226)
Q Consensus 44 ~~kiliv~GtGGH~~p~lal~~~l~~~~~~ 73 (226)
.++++|+||||+- +..+++.|.+++++
T Consensus 5 ~~~vlItGatG~i---G~~l~~~L~~~g~~ 31 (352)
T PLN02240 5 GRTILVTGGAGYI---GSHTVLQLLLAGYK 31 (352)
T ss_pred CCEEEEECCCChH---HHHHHHHHHHCCCE
Confidence 3688888988754 34455666655643
No 499
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=20.41 E-value=3.8e+02 Score=25.01 Aligned_cols=18 Identities=22% Similarity=0.528 Sum_probs=10.6
Q ss_pred EEEecChhhHHHHHHHHH
Q 027253 48 LIVLGSGGHTAEMMNLLS 65 (226)
Q Consensus 48 liv~GtGGH~~p~lal~~ 65 (226)
+++-|+|+|..+..+..+
T Consensus 128 vlIiGag~~~~~l~~~l~ 145 (456)
T TIGR03022 128 AVIIGAGQNAAILYRALQ 145 (456)
T ss_pred EEEEeCCHHHHHHHHHHh
Confidence 444567777776555443
No 500
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=20.40 E-value=1.7e+02 Score=25.91 Aligned_cols=31 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred eEEEEEecChhhHHHHHHHHHHhhhcCCCCeEEEE
Q 027253 45 LSTLIVLGSGGHTAEMMNLLSVLQMDRFTPRFYIA 79 (226)
Q Consensus 45 ~kiliv~GtGGH~~p~lal~~~l~~~~~~~~~~~~ 79 (226)
++++|+|||| +=+.++++.|.+++++ .+.++
T Consensus 2 ~~vlVtGatG---fIG~~l~~~L~~~g~~-~v~~~ 32 (355)
T PRK10217 2 RKILITGGAG---FIGSALVRYIINETSD-AVVVV 32 (355)
T ss_pred cEEEEEcCCc---HHHHHHHHHHHHcCCC-EEEEE
Done!