Query 027254
Match_columns 226
No_of_seqs 294 out of 1528
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:12:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027254.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027254hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1668 Elongation factor 1 be 100.0 1.3E-65 2.9E-70 444.8 13.1 222 2-226 1-231 (231)
2 cd00292 EF1B Elongation factor 100.0 2.8E-34 6.1E-39 217.9 10.8 88 135-226 1-88 (88)
3 PRK00435 ef1B elongation facto 100.0 2.8E-33 6E-38 212.3 10.0 87 136-226 2-88 (88)
4 PF00736 EF1_GNE: EF-1 guanine 100.0 6.7E-33 1.5E-37 210.7 9.7 87 137-226 1-89 (89)
5 TIGR00489 aEF-1_beta translati 100.0 4.7E-30 1E-34 194.7 9.9 87 136-226 2-88 (88)
6 COG2092 EFB1 Translation elong 99.9 1.9E-26 4.2E-31 173.7 9.4 87 136-226 2-88 (88)
7 PF00043 GST_C: Glutathione S- 99.0 3.5E-10 7.5E-15 83.5 3.6 55 11-65 34-95 (95)
8 PF14497 GST_C_3: Glutathione 98.8 1.2E-09 2.6E-14 82.3 2.3 53 11-63 41-99 (99)
9 cd03198 GST_C_CLIC GST_C famil 98.8 4.9E-09 1.1E-13 85.3 4.5 57 11-67 35-118 (134)
10 cd03200 GST_C_JTV1 GST_C famil 98.8 7E-09 1.5E-13 78.9 5.0 54 11-64 41-96 (96)
11 cd03188 GST_C_Beta GST_C famil 98.8 5.4E-09 1.2E-13 79.0 4.1 57 11-67 49-110 (114)
12 cd03206 GST_C_7 GST_C family, 98.8 7.6E-09 1.7E-13 77.8 4.8 56 11-66 39-99 (100)
13 cd03204 GST_C_GDAP1 GST_C fami 98.8 4.8E-09 1E-13 82.7 3.6 56 11-66 35-110 (111)
14 cd03207 GST_C_8 GST_C family, 98.8 5.8E-09 1.3E-13 78.4 3.9 57 11-67 36-96 (103)
15 cd03189 GST_C_GTT1_like GST_C 98.8 7.6E-09 1.6E-13 79.4 4.4 56 10-65 59-119 (119)
16 cd03180 GST_C_2 GST_C family, 98.7 1.3E-08 2.9E-13 76.4 4.9 56 11-66 49-109 (110)
17 cd03177 GST_C_Delta_Epsilon GS 98.7 1.8E-08 4E-13 77.7 5.4 57 11-67 44-106 (118)
18 cd03196 GST_C_5 GST_C family, 98.7 1.5E-08 3.2E-13 79.0 4.6 57 11-67 47-111 (115)
19 cd03182 GST_C_GTT2_like GST_C 98.7 1.5E-08 3.2E-13 77.5 4.5 56 11-66 55-116 (117)
20 PF13410 GST_C_2: Glutathione 98.7 8.2E-09 1.8E-13 72.6 2.7 50 11-60 12-69 (69)
21 cd03187 GST_C_Phi GST_C family 98.7 1.8E-08 4E-13 76.7 4.4 57 11-67 51-114 (118)
22 cd03186 GST_C_SspA GST_N famil 98.7 2.2E-08 4.7E-13 75.8 4.2 57 11-67 41-103 (107)
23 cd03191 GST_C_Zeta GST_C famil 98.7 2.5E-08 5.5E-13 77.0 4.4 57 11-67 50-113 (121)
24 cd03190 GST_C_ECM4_like GST_C 98.7 2.1E-08 4.6E-13 80.9 4.1 57 11-67 43-112 (142)
25 cd03209 GST_C_Mu GST_C family, 98.6 3.3E-08 7.1E-13 77.0 4.6 57 11-67 41-103 (121)
26 cd03202 GST_C_etherase_LigE GS 98.6 3.4E-08 7.3E-13 78.1 4.5 54 11-64 64-124 (124)
27 cd03185 GST_C_Tau GST_C family 98.6 3.2E-08 7E-13 76.5 4.2 57 11-67 41-109 (126)
28 cd03193 GST_C_Metaxin GST_C fa 98.6 3.3E-08 7.2E-13 72.7 3.3 52 11-62 25-88 (88)
29 cd03208 GST_C_Alpha GST_C fami 98.6 4.8E-08 1E-12 78.6 4.3 57 11-67 45-109 (137)
30 PRK13972 GSH-dependent disulfi 98.6 4.3E-08 9.4E-13 83.3 4.1 57 11-67 138-199 (215)
31 PLN02473 glutathione S-transfe 98.6 4.6E-08 1E-12 82.7 3.8 57 11-67 141-205 (214)
32 cd03183 GST_C_Theta GST_C fami 98.6 9E-08 2E-12 74.4 4.8 57 11-67 51-116 (126)
33 cd03178 GST_C_Ure2p_like GST_C 98.5 3.9E-08 8.4E-13 74.7 2.4 57 11-67 46-108 (113)
34 cd03210 GST_C_Pi GST_C family, 98.5 7.7E-08 1.7E-12 75.7 4.1 57 11-67 41-106 (126)
35 PLN02907 glutamate-tRNA ligase 98.5 7.8E-08 1.7E-12 96.8 4.5 56 11-66 96-159 (722)
36 cd03179 GST_C_1 GST_C family, 98.5 1.1E-07 2.4E-12 71.0 4.1 52 11-62 49-105 (105)
37 cd03201 GST_C_DHAR GST_C famil 98.5 1.1E-07 2.5E-12 75.1 4.3 57 11-67 36-104 (121)
38 PLN02395 glutathione S-transfe 98.5 1.1E-07 2.5E-12 80.2 4.3 56 12-67 141-204 (215)
39 PRK10542 glutathionine S-trans 98.5 1.6E-07 3.4E-12 78.4 5.1 57 11-67 130-191 (201)
40 cd00299 GST_C_family Glutathio 98.5 1.2E-07 2.6E-12 69.1 3.5 51 11-61 42-100 (100)
41 PRK10387 glutaredoxin 2; Provi 98.5 2.4E-07 5.1E-12 77.8 5.8 56 11-67 148-207 (210)
42 cd03181 GST_C_EFB1gamma GST_C 98.5 1.1E-07 2.5E-12 73.1 3.5 57 11-67 46-110 (123)
43 TIGR01262 maiA maleylacetoacet 98.5 1.5E-07 3.3E-12 78.9 4.5 57 11-67 135-198 (210)
44 cd03184 GST_C_Omega GST_C fami 98.5 1.4E-07 3.1E-12 73.7 3.8 57 11-67 38-107 (124)
45 PTZ00057 glutathione s-transfe 98.4 1.6E-07 3.5E-12 79.6 3.9 57 11-67 129-193 (205)
46 COG0625 Gst Glutathione S-tran 98.4 2.4E-07 5.2E-12 78.3 4.6 57 11-67 137-198 (211)
47 cd03203 GST_C_Lambda GST_C fam 98.4 1.7E-07 3.6E-12 73.5 3.2 56 11-67 36-105 (120)
48 PRK09481 sspA stringent starva 98.4 3.3E-07 7.2E-12 77.9 4.7 57 11-67 133-196 (211)
49 TIGR00862 O-ClC intracellular 98.4 2.8E-07 6E-12 81.4 3.9 57 11-67 129-214 (236)
50 PRK11752 putative S-transferas 98.3 4.5E-07 9.7E-12 80.5 4.6 57 11-67 184-252 (264)
51 cd03197 GST_C_mPGES2 GST_C fam 98.3 4.5E-07 9.7E-12 75.2 3.9 48 18-65 93-147 (149)
52 PRK10357 putative glutathione 98.3 7.5E-07 1.6E-11 74.6 4.4 56 11-67 131-194 (202)
53 PLN02378 glutathione S-transfe 98.3 5.9E-07 1.3E-11 76.8 3.7 57 11-67 124-193 (213)
54 KOG0867 Glutathione S-transfer 98.3 8.2E-07 1.8E-11 77.4 4.3 56 11-66 139-202 (226)
55 cd03192 GST_C_Sigma_like GST_C 98.3 4.9E-07 1.1E-11 67.9 2.5 51 11-61 45-104 (104)
56 cd03194 GST_C_3 GST_C family, 98.2 7.6E-07 1.6E-11 69.3 3.1 55 12-67 48-108 (114)
57 TIGR02182 GRXB Glutaredoxin, G 98.2 2E-06 4.4E-11 73.4 5.3 56 11-67 147-206 (209)
58 PLN02817 glutathione dehydroge 98.1 3.3E-06 7.1E-11 75.5 4.9 57 11-67 177-245 (265)
59 cd03205 GST_C_6 GST_C family, 98.1 1.7E-06 3.6E-11 65.0 2.5 48 11-61 43-98 (98)
60 cd03211 GST_C_Metaxin2 GST_C f 98.0 4.3E-06 9.3E-11 66.6 3.0 50 12-61 64-125 (126)
61 cd03195 GST_C_4 GST_C family, 98.0 3.7E-06 8E-11 65.3 2.5 56 11-68 48-108 (114)
62 cd03212 GST_C_Metaxin1_3 GST_C 97.9 1.2E-05 2.5E-10 65.2 4.7 54 11-64 70-135 (137)
63 PF10587 EF-1_beta_acid: Eukar 97.7 2.9E-05 6.2E-10 47.0 2.5 22 107-128 1-23 (28)
64 PRK15113 glutathione S-transfe 97.7 4.7E-05 1E-09 64.8 4.3 56 11-67 143-202 (214)
65 COG0435 ECM4 Predicted glutath 97.4 0.00015 3.2E-09 65.9 4.0 57 11-67 211-280 (324)
66 KOG2903 Predicted glutathione 96.8 0.00074 1.6E-08 61.0 2.6 57 11-67 209-282 (319)
67 KOG1422 Intracellular Cl- chan 96.8 0.00079 1.7E-08 58.9 2.3 56 12-67 130-199 (221)
68 KOG0868 Glutathione S-transfer 96.8 0.0012 2.5E-08 56.9 3.1 56 12-67 139-201 (217)
69 KOG1147 Glutamyl-tRNA syntheta 96.7 0.00051 1.1E-08 67.3 0.9 55 11-65 94-156 (712)
70 KOG0406 Glutathione S-transfer 96.4 0.0041 8.9E-08 55.1 4.3 58 10-67 134-205 (231)
71 KOG4420 Uncharacterized conser 96.3 0.0042 9.1E-08 56.3 3.8 59 12-70 212-284 (325)
72 KOG4244 Failed axon connection 96.1 0.0042 9E-08 56.1 2.7 52 12-63 210-272 (281)
73 KOG1695 Glutathione S-transfer 95.6 0.016 3.4E-07 50.6 4.2 57 11-67 129-194 (206)
74 KOG3029 Glutathione S-transfer 92.6 0.11 2.5E-06 47.7 3.3 45 22-66 306-357 (370)
75 PF04399 Glutaredoxin2_C: Glut 92.2 0.25 5.4E-06 40.3 4.6 55 12-67 66-124 (132)
76 KOG3027 Mitochondrial outer me 90.0 0.36 7.8E-06 42.7 3.7 53 12-64 184-248 (257)
77 cd03199 GST_C_GRX2 GST_C famil 89.1 0.9 2E-05 36.9 5.2 53 13-66 68-124 (128)
78 KOG3028 Translocase of outer m 84.9 1.1 2.4E-05 41.5 3.8 55 11-65 169-235 (313)
79 PF10587 EF-1_beta_acid: Eukar 84.2 1.1 2.5E-05 27.2 2.4 20 111-130 9-28 (28)
80 PF11801 Tom37_C: Tom37 C-term 81.5 1.9 4.1E-05 36.2 3.7 45 10-54 113-161 (168)
81 PF03927 NapD: NapD protein; 71.1 22 0.00047 26.2 6.5 68 138-222 6-73 (79)
82 PRK10553 assembly protein for 63.6 35 0.00076 25.8 6.4 69 138-222 8-76 (87)
83 TIGR03116 cas_csf3 CRISPR-asso 43.0 8.9 0.00019 33.4 0.3 41 144-184 39-79 (214)
84 PRK04435 hypothetical protein; 35.0 42 0.00091 27.4 3.1 78 140-224 70-147 (147)
85 cd00086 homeodomain Homeodomai 30.1 87 0.0019 20.3 3.5 48 10-65 8-55 (59)
86 cd04888 ACT_PheB-BS C-terminal 26.3 73 0.0016 21.7 2.7 37 181-221 39-75 (76)
87 PF09447 Cnl2_NKP2: Cnl2/NKP2 23.2 1.6E+02 0.0034 21.3 4.0 46 16-65 5-50 (67)
88 PF07462 MSP1_C: Merozoite sur 21.2 88 0.0019 31.4 3.0 29 5-33 185-213 (574)
89 PF02680 DUF211: Uncharacteriz 20.1 4.2E+02 0.0092 20.5 7.3 75 140-224 7-83 (95)
No 1
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=100.00 E-value=1.3e-65 Score=444.84 Aligned_cols=222 Identities=55% Similarity=0.868 Sum_probs=188.0
Q ss_pred cccccCcccHHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCC-CCCCccHHHHHHHHHhhhccc--CCCCCCCCce
Q 027254 2 AVAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAP-SSEYVNVSRWYKHIDALLRIS--GVTGEGSGVT 78 (226)
Q Consensus 2 ~~~f~dl~s~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p-~~~yPnl~RWy~~I~s~p~~~--~~pg~~~~~~ 78 (226)
+|.|+|+++..+++.||.+|++++|+.|+++|.+|+.+|.++...| ...|+|..|||++|.++.... .++|......
T Consensus 1 ~m~ftdl~~~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~ep~s~~~v~~~~w~~~l~a~~~~~~~~~~G~~~~~~ 80 (231)
T KOG1668|consen 1 PMAFTDLKSPAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVEPQSARLVNAERWYSKLEALLRLLAKLLAGVSKALP 80 (231)
T ss_pred CCcccccCchhhhhhhhHhhhcccCCCCCCcccccceeehhcccCcchhhhhHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 4899999999999999999999999999999999999999998777 469999999999999987632 4555444433
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcHHHHH----HHHHHHHHHHhhhcc--cccccceeEEEeecCCCccc
Q 027254 79 VEGSAPVATPPVADSKATAPDDDDDDVDLFGEETEEEKK----AAEARAASVKASAKK--KESGKSSVLLDVKPWDDETD 152 (226)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~ddd~dlfg~~~ee~~~----~~~~~~~~~~~~~~~--~~~~Ks~v~l~vkP~d~etd 152 (226)
..+++..++|++.+++++++.+||||+||||||+||+++ .+++|.++|++++.+ .+++||+|+|+|||||+|||
T Consensus 81 ~~~~~~~a~~~~~~~a~~ae~dddDDiDLFGsd~EEEd~eA~~~~eErla~y~~kka~k~~~iakssvlLdvkpwddeTd 160 (231)
T KOG1668|consen 81 AHGAPSVAAPPAVEAAAAAEADDDDDVDLFGSDDEEEDEEAARIREERLAAYAAKKAKKPPPIAKSSVLLDVKPWDDETD 160 (231)
T ss_pred cCCCCcCCCCccccccccccccccccccccCCccccchhHHHHHHhhhhhhhhHHhccCCcccccceEEeecCCcCCCCC
Confidence 333332223232333555667899999999998776543 456677777765443 35999999999999999999
Q ss_pred HHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCcceeeeeeeccC
Q 027254 153 MKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIVAFNKI 226 (226)
Q Consensus 153 l~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~VqS~di~~~~k~ 226 (226)
|.+|+++||+|+|+||+||++|++|||||||||||+|||+||+||+|.|+|+ |..+|++||||||++||||
T Consensus 161 m~~~e~~vrsi~~~gl~wgasklvpvGygikKlqi~~vveddkvs~D~l~e~---i~~~e~~Vqs~di~afnki 231 (231)
T KOG1668|consen 161 MKELEECVRSIEMDGLVWGASKLVPVGYGIKKLQIQCVVEDDKVSIDDLIEE---ITKFEDHVQSVDIAAFNKI 231 (231)
T ss_pred HHHHHHHHHHhhhccceeccccccccccceeeEEEEEEEEcCccccchhHHH---hhhhhcceeeehhhhcccC
Confidence 9999999999999999999999999999999999999999999999999999 7889999999999999997
No 2
>cd00292 EF1B Elongation factor 1 beta (EF1B) guanine nucleotide exchange domain. EF1B catalyzes the exchange of GDP bound to the G-protein, EF1A, for GTP, an important step in the elongation cycle of the protein biosynthesis. EF1A binds to and delivers the aminoacyl tRNA to the ribosome. The guanine nucleotide exchange domain of EF1B, which is the alpha subunit in yeast, is responsible for the catalysis of this exchange reaction.
Probab=100.00 E-value=2.8e-34 Score=217.89 Aligned_cols=88 Identities=50% Similarity=0.809 Sum_probs=84.9
Q ss_pred cccceeEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCC
Q 027254 135 SGKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEY 214 (226)
Q Consensus 135 ~~Ks~v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~ 214 (226)
.+||+++|+|||||+||||++|+++||++.++||+||.++++||||||||||+.|+|+|+++|||+|+|+ |.+. ++
T Consensus 1 mak~~vvl~V~P~~~e~Dl~~l~~~Ik~~~~~gl~~~~~~~epiaFGlk~L~i~~vv~D~~~~td~lee~---i~~~-d~ 76 (88)
T cd00292 1 MAKSLVVLKVKPWDDEVDLDELEEKIRAILMDGLLWGKSKLEPIAFGLKALQIYCVVEDDEGGTDELEEA---ISEE-DG 76 (88)
T ss_pred CceEEEEEEEecCCCCcCHHHHHHHHHHhCcCCcEEEEEEEEEeeeEeeEEEEEEEEEeCCcCcHHHHHH---Hhcc-CC
Confidence 3799999999999999999999999999999999999999999999999999999999999999999999 7774 99
Q ss_pred cceeeeeeeccC
Q 027254 215 VQSCDIVAFNKI 226 (226)
Q Consensus 215 VqS~di~~~~k~ 226 (226)
||||||++||||
T Consensus 77 VqsveI~~~~ki 88 (88)
T cd00292 77 VQSVDVEAFNKL 88 (88)
T ss_pred ceEEEEEEEEeC
Confidence 999999999997
No 3
>PRK00435 ef1B elongation factor 1-beta; Validated
Probab=100.00 E-value=2.8e-33 Score=212.30 Aligned_cols=87 Identities=23% Similarity=0.418 Sum_probs=84.6
Q ss_pred ccceeEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCc
Q 027254 136 GKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYV 215 (226)
Q Consensus 136 ~Ks~v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~V 215 (226)
+|++++|+|||||+||||++|+++||++.++|+.||+++++|||||||+||+.|+|+|+++|||+|+|+ |++||+ |
T Consensus 2 ~~v~vv~~V~P~d~e~Dl~~L~~~ik~~~~~g~~~~~~~~ePIaFGLkaL~i~~vv~D~~~~td~lee~---i~~~e~-V 77 (88)
T PRK00435 2 GDVLAVLKVMPESPEVDLDELKEKIKEVLPEGYKINGIEEEPIAFGLKALKLYVIMPDEEGGTEPVEEA---FANVEG-V 77 (88)
T ss_pred ceEEEEEEECCCCCCcCHHHHHHHHHHhCcCCcEEeEeEEEEeeccceeEEEEEEEEcCCcCcHHHHHH---HhccCC-C
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 899977 9
Q ss_pred ceeeeeeeccC
Q 027254 216 QSCDIVAFNKI 226 (226)
Q Consensus 216 qS~di~~~~k~ 226 (226)
|||||++||+|
T Consensus 78 qsvei~~~~r~ 88 (88)
T PRK00435 78 ESVEVEEVSRI 88 (88)
T ss_pred cEEEEEEEecC
Confidence 99999999986
No 4
>PF00736 EF1_GNE: EF-1 guanine nucleotide exchange domain; InterPro: IPR014038 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the guanine nucleotide exchange domain of the beta (EF-1beta, also known as EF1B-alpha) and delta (EF-1delta, also known as EF1B-beta) chains of EF1B proteins from eukaryotes and archaea. The beta and delta chains have exchange activity, which mainly resides in their homologous guanine nucleotide exchange domains, found in the C-terminal region of the peptides. Their N-terminal regions may be involved in interactions with the gamma chain (EF-1gamma). More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005853 eukaryotic translation elongation factor 1 complex; PDB: 2YY3_B 1GH8_A 1B64_A 1IJE_B 1IJF_B 1F60_B 1G7C_B 2B7B_B 2B7C_B.
Probab=100.00 E-value=6.7e-33 Score=210.75 Aligned_cols=87 Identities=52% Similarity=0.830 Sum_probs=81.1
Q ss_pred cceeEEEeecCCCcccHHHHHHHH-hhhccCCceEe-eeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCC
Q 027254 137 KSSVLLDVKPWDDETDMKKLEEAV-RSVQMEGLLWG-ASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEY 214 (226)
Q Consensus 137 Ks~v~l~vkP~d~etdl~~l~~~v-r~i~~~gl~wg-~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~ 214 (226)
||+++|+|||||++|||++|+++| |++.++|++|| .++++|||||||+||+.|+|+|++||||+|+++ |..++++
T Consensus 1 ks~vv~~V~P~d~e~Dl~~l~~~Ik~~i~~~gl~w~~~~~~epIaFGlk~L~v~~vv~D~~~~~d~lee~---i~~~~e~ 77 (89)
T PF00736_consen 1 KSSVVLKVKPWDDETDLEKLEKKIKRKIPMEGLKWGEKSKEEPIAFGLKALQVSCVVEDDEGSTDDLEEA---IESFEEG 77 (89)
T ss_dssp EEEEEEEEEESSTTS-HHHHHHHHHHHS-TTTEEEEEEEEEEEECTTEEEEEEEEEECTTTCGHHHHHHH---HTTCTTT
T ss_pred CceEEEEEeeCCCcccHHHHHHHHHHhchhcceeeeeeeeeeeecccEEEEEEEEEEEcCccChHHHHHH---HHhcCCC
Confidence 799999999999999999999999 78999999999 999999999999999999999999999999999 6667799
Q ss_pred cceeeeeeeccC
Q 027254 215 VQSCDIVAFNKI 226 (226)
Q Consensus 215 VqS~di~~~~k~ 226 (226)
||||||++||||
T Consensus 78 Vqsvei~~~~rl 89 (89)
T PF00736_consen 78 VQSVEIESFNRL 89 (89)
T ss_dssp EEEEEEEEEEE-
T ss_pred ccEEEEEEEEcC
Confidence 999999999997
No 5
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=99.96 E-value=4.7e-30 Score=194.65 Aligned_cols=87 Identities=18% Similarity=0.310 Sum_probs=84.4
Q ss_pred ccceeEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCc
Q 027254 136 GKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYV 215 (226)
Q Consensus 136 ~Ks~v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~V 215 (226)
+|+.++|+|||||+|+||++|+++||++.++|+.||.++.+|||||||+||+.|+|+|+++|||+|+++ |+++| +|
T Consensus 2 ~~v~~~~kV~P~s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFGLkaL~~~~vv~D~~g~td~lee~---i~~ve-~V 77 (88)
T TIGR00489 2 GDVVAKIKVMPESPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFGLVAINVMVVMGDAEGGTEAAEES---LSGIE-GV 77 (88)
T ss_pred ceEEEEEEECCCCCccCHHHHHHHHHHhCcCCcEEeeeEEEeeeccceeeEEEEEEecCCcChHHHHHH---HhcCC-Cc
Confidence 679999999999999999999999999999999999999999999999999999999999999999999 89995 79
Q ss_pred ceeeeeeeccC
Q 027254 216 QSCDIVAFNKI 226 (226)
Q Consensus 216 qS~di~~~~k~ 226 (226)
||++|++|++|
T Consensus 78 ~svev~~~~r~ 88 (88)
T TIGR00489 78 ESVEVTDVRLL 88 (88)
T ss_pred cEEEEEEEEcC
Confidence 99999999986
No 6
>COG2092 EFB1 Translation elongation factor EF-1beta [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.9e-26 Score=173.68 Aligned_cols=87 Identities=28% Similarity=0.418 Sum_probs=83.4
Q ss_pred ccceeEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCc
Q 027254 136 GKSSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYV 215 (226)
Q Consensus 136 ~Ks~v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~V 215 (226)
+++.++|+|||||+++||++|+++||+++|+|++|+.+..+|||||||+|++.|+|+|..+|||.+++. ++.+ ++|
T Consensus 2 ~~Vlv~lkV~P~d~evdl~~L~~~ik~~l~~g~~~~~~~~epIaFGLkal~l~vvv~D~Eg~td~~ee~---l~~v-egV 77 (88)
T COG2092 2 ADVLVVLKVMPDDPEVDLEELEEKIKEKLPEGYELIKIEEEPIAFGLKALKLYVVVEDKEGGTDALEEA---LEEV-EGV 77 (88)
T ss_pred cceEEEEEecCCCCCCCHHHHHHHHHHhccccceeccceeEeeeeeeeeEEEEEEEcccccCcHHHHHH---Hhhc-cCc
Confidence 578999999999999999999999999999999999999999999999999999999999999999999 8999 559
Q ss_pred ceeeeeeeccC
Q 027254 216 QSCDIVAFNKI 226 (226)
Q Consensus 216 qS~di~~~~k~ 226 (226)
||++|+.+.+|
T Consensus 78 ~sveve~vsrl 88 (88)
T COG2092 78 ESVEVENVSRL 88 (88)
T ss_pred ceEEEEEEEeC
Confidence 99999999876
No 7
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=98.98 E-value=3.5e-10 Score=83.49 Aligned_cols=55 Identities=20% Similarity=0.361 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------CC-CCCccHHHHHHHHHhhh
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------PS-SEYVNVSRWYKHIDALL 65 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------p~-~~yPnl~RWy~~I~s~p 65 (226)
...|..++.+|+++.|++|+++|+||+.++..+... .. .+|||+.+|++||.++|
T Consensus 34 ~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 34 PRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPDFLFEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTTTTHTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCCcccccCHHHHHHHHHHHcCC
Confidence 467899999999999999999999999999998763 23 78999999999999886
No 8
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=98.85 E-value=1.2e-09 Score=82.32 Aligned_cols=53 Identities=30% Similarity=0.637 Sum_probs=43.7
Q ss_pred HHHHHHHHhhcCCCC--eeecCCCCHHHHHHHchhccC--C--CCCCccHHHHHHHHHh
Q 027254 11 ATGLKKLDEYLLTRS--YITGYQASKDDITVYSALSKA--P--SSEYVNVSRWYKHIDA 63 (226)
Q Consensus 11 ~~~L~~Ln~~La~rs--Yl~G~~~SiADIavf~~L~~~--p--~~~yPnl~RWy~~I~s 63 (226)
...|+.||++|+.+. ||+|++||+||+++|+.|... . +..||||.|||+||++
T Consensus 41 ~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~~~~~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 41 PKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRWADFPKDYPNLVRWYERIEE 99 (99)
T ss_dssp HHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHCCHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhhcccccccHHHHHHHHhhcC
Confidence 467899999999999 999999999999999988432 1 1589999999999974
No 9
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=98.80 E-value=4.9e-09 Score=85.31 Aligned_cols=57 Identities=23% Similarity=0.374 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCC----------------CCeeecCCCCHHHHHHHchhccC----------C-CCCCccHHHHHHHHHh
Q 027254 11 ATGLKKLDEYLLT----------------RSYITGYQASKDDITVYSALSKA----------P-SSEYVNVSRWYKHIDA 63 (226)
Q Consensus 11 ~~~L~~Ln~~La~----------------rsYl~G~~~SiADIavf~~L~~~----------p-~~~yPnl~RWy~~I~s 63 (226)
...|+.||.+|++ +.||+|+++|+||++++..+... . ...||||.||+.+|.+
T Consensus 35 ~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~~~~~~~~g~~i~~~~P~L~aw~~ri~a 114 (134)
T cd03198 35 LKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFEIPADLTGLWRYLKNAYQ 114 (134)
T ss_pred HHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHhhcCCCccccCHHHHHHHHHHHC
Confidence 4678999999987 67999999999999999887521 1 3689999999999999
Q ss_pred hhcc
Q 027254 64 LLRI 67 (226)
Q Consensus 64 ~p~~ 67 (226)
+|.+
T Consensus 115 RPsf 118 (134)
T cd03198 115 REEF 118 (134)
T ss_pred CHHH
Confidence 9975
No 10
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=98.80 E-value=7e-09 Score=78.90 Aligned_cols=54 Identities=30% Similarity=0.445 Sum_probs=47.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCC--CCCCccHHHHHHHHHhh
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAP--SSEYVNVSRWYKHIDAL 64 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p--~~~yPnl~RWy~~I~s~ 64 (226)
...++.||++|..++|++|+++|+|||.++..+.... ...|||+.||+++|.++
T Consensus 41 ~~~l~~le~~L~~~~fl~Gd~~tiADi~l~~~l~~~~~~~~~~p~l~~w~~r~~~~ 96 (96)
T cd03200 41 AAVLRALNSALGRSPWLVGSEFTVADIVSWCALLQTGLASAAPANVQRWLKSCENL 96 (96)
T ss_pred HHHHHHHHHHHcCCCccCCCCCCHHHHHHHHHHHHcccccccChHHHHHHHHHHhC
Confidence 4689999999999999999999999999998886543 25799999999999763
No 11
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=98.79 E-value=5.4e-09 Score=79.04 Aligned_cols=57 Identities=25% Similarity=0.310 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.++.|++|+++|+|||+++..+... ....||++.+|+++|.++|.+
T Consensus 49 ~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 110 (114)
T cd03188 49 AARLAYLDAQLAGGPYLLGDRFSVADAYLFVVLRWAPGVGLDLSDWPNLAAYLARVAARPAV 110 (114)
T ss_pred HHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHHHHHhhcCCChhhChHHHHHHHHHHhCHHh
Confidence 467889999999999999999999999998777542 124799999999999999864
No 12
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.78 E-value=7.6e-09 Score=77.79 Aligned_cols=56 Identities=29% Similarity=0.507 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhhc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p~ 66 (226)
...|+.||++|++++|++|+++|+||+.++..+... ....||++.+|+++|.++|.
T Consensus 39 ~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 99 (100)
T cd03206 39 HRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAPEGGVDLEDYPAIRRWLARIEALPG 99 (100)
T ss_pred HHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHhccCCChhhCcHHHHHHHHHHhCcC
Confidence 457899999999999999999999999998887542 13589999999999999885
No 13
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=98.78 E-value=4.8e-09 Score=82.68 Aligned_cols=56 Identities=14% Similarity=0.250 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCC----------eeecCCCCHHHHHHHchhccC-----C-----CCCCccHHHHHHHHHhhhc
Q 027254 11 ATGLKKLDEYLLTRS----------YITGYQASKDDITVYSALSKA-----P-----SSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 11 ~~~L~~Ln~~La~rs----------Yl~G~~~SiADIavf~~L~~~-----p-----~~~yPnl~RWy~~I~s~p~ 66 (226)
...|..||.+|.++. |++|+++|+|||+++..+.+. + ...|||+.||+++|.++|.
T Consensus 35 ~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~P~l~~w~~rv~aRps 110 (111)
T cd03204 35 EMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFLGLSRRYWGNGKRPNLEAYFERVLQRES 110 (111)
T ss_pred HHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHcCccccccccccChHHHHHHHHHHcCCC
Confidence 467899999998764 999999999999999887542 1 1479999999999999885
No 14
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.78 E-value=5.8e-09 Score=78.43 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC----CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA----PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~----p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|+.||.+|++++|++|+++|+||++++..+.+. ....|||+.||+++|.++|.+
T Consensus 36 ~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 96 (103)
T cd03207 36 DDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQFGLLPERPAFDAYIARITDRPAF 96 (103)
T ss_pred HHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHcCHHH
Confidence 567899999999999999999999999998776553 136899999999999999864
No 15
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=98.77 E-value=7.6e-09 Score=79.43 Aligned_cols=56 Identities=23% Similarity=0.341 Sum_probs=47.5
Q ss_pred cHHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhh
Q 027254 10 SATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALL 65 (226)
Q Consensus 10 s~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p 65 (226)
....|..||.+|.++.|++|+++|+||++++..+.+. ....||++.+|+++|.++|
T Consensus 59 ~~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 59 LKKHLDFLEDRLAKKGYFVGDKLTAADIMMSFPLEAALARGPLLEKYPNIAAYLERIEARP 119 (119)
T ss_pred HHHHHHHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCchHHHHHHHHhcCC
Confidence 3567889999999999999999999999998666442 2368999999999998875
No 16
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.74 E-value=1.3e-08 Score=76.40 Aligned_cols=56 Identities=23% Similarity=0.346 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhcc-C----CCCCCccHHHHHHHHHhhhc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSK-A----PSSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~-~----p~~~yPnl~RWy~~I~s~p~ 66 (226)
.+.|..||++|.++.|++|+++|+||++++..+.. . ....||++.+|+++|+++|.
T Consensus 49 ~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 109 (110)
T cd03180 49 AKLMAILDAQLAGRPYLAGDRFTLADIPLGCSAYRWFELPIERPPLPHLERWYARLRARPA 109 (110)
T ss_pred HHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHHHHHHHcccccccCchHHHHHHHHHhCCC
Confidence 46789999999999999999999999999877632 1 23689999999999999874
No 17
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=98.72 E-value=1.8e-08 Score=77.74 Aligned_cols=57 Identities=26% Similarity=0.461 Sum_probs=48.9
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
.+.|+.||++|.+++|+.|+++|+||++++..+... +...||++.+|+++|.++|.+
T Consensus 44 ~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 106 (118)
T cd03177 44 EEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEALLPLDLSKYPNVRAWLERLKALPPY 106 (118)
T ss_pred HHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHHhcCCChhhCchHHHHHHHHHcccch
Confidence 467899999999899999999999999998776431 235799999999999999975
No 18
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.71 E-value=1.5e-08 Score=79.00 Aligned_cols=57 Identities=25% Similarity=0.325 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||.+|+++.|++|+++|+||++++..+... . ...|||+.|||++|.++|.+
T Consensus 47 ~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~~~~~~~~~~~~~~~P~L~~w~~r~~~rpa~ 111 (115)
T cd03196 47 EAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQFAHVDPKWFDQSPYPRLRRWLNGFLASPLF 111 (115)
T ss_pred HHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHHHHHhhhcccCcccCHHHHHHHHHHHcChHH
Confidence 567889999999999999999999999998765321 1 26899999999999999864
No 19
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=98.71 E-value=1.5e-08 Score=77.45 Aligned_cols=56 Identities=29% Similarity=0.412 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----C-CCCCccHHHHHHHHHhhhc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----P-SSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p-~~~yPnl~RWy~~I~s~p~ 66 (226)
...|..||++|+++.|++|+++|+||++++..+... . ...|||+.+|+++|.++|.
T Consensus 55 ~~~l~~le~~L~~~~~l~gd~~t~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~ 116 (117)
T cd03182 55 ADFLAYLDTRLAGSPYVAGDRFTIADITAFVGLDFAKVVKLRVPEELTHLRAWYDRMAARPS 116 (117)
T ss_pred HHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHhHHHHhcCCCCccccHHHHHHHHHHHhccC
Confidence 467889999999999999999999999998877542 1 2589999999999999874
No 20
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=98.71 E-value=8.2e-09 Score=72.59 Aligned_cols=50 Identities=24% Similarity=0.441 Sum_probs=42.2
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC---C-----CCCCccHHHHHHH
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA---P-----SSEYVNVSRWYKH 60 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~---p-----~~~yPnl~RWy~~ 60 (226)
...|..||++|++++|+.|++||+||++++..+... + ...|||+.+||+|
T Consensus 12 ~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~r 69 (69)
T PF13410_consen 12 EAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGPDFDLLEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTHTCCHHTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCcCcCccccCHHHHHHHhC
Confidence 567999999999999999999999999999988652 1 3689999999986
No 21
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=98.69 E-value=1.8e-08 Score=76.73 Aligned_cols=57 Identities=18% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|++++|++|+++|+||++++..+... +...|||+.||+++|.++|.+
T Consensus 51 ~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 114 (118)
T cd03187 51 KKVLDVYEARLSKSKYLAGDSFTLADLSHLPYLQYLMATPFAKLFDSRPHVKAWWEDISARPAW 114 (118)
T ss_pred HHHHHHHHHHcccCcccCCCCccHHHHHHHHHHHHHHHccchhhhhcCchHHHHHHHHHhCHHH
Confidence 456889999999999999999999999988665331 135799999999999999864
No 22
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=98.67 E-value=2.2e-08 Score=75.79 Aligned_cols=57 Identities=12% Similarity=0.080 Sum_probs=48.8
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC---C---CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA---P---SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~---p---~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||.+|+++.|++|+++|+||++++..+... . ...||++.+|+++|.++|.+
T Consensus 41 ~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~ 103 (107)
T cd03186 41 RESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLPALGIELPKQAKPLKDYMERVFARDSF 103 (107)
T ss_pred HHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHCCHHH
Confidence 467899999999999999999999999999876421 1 24799999999999999964
No 23
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=98.66 E-value=2.5e-08 Score=77.03 Aligned_cols=57 Identities=21% Similarity=0.278 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCC--CCeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLT--RSYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~--rsYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||.+|++ ..|++|+++|+|||+++..+... +...||++.+|+++|.++|.+
T Consensus 50 ~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 113 (121)
T cd03191 50 ARGFAALEKLLAQTAGKFCFGDEPTLADICLVPQVYNARRFGVDLSPYPTIARINEACLELPAF 113 (121)
T ss_pred HHHHHHHHHHHHhcCCCeecCCcCCHHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHHhChhH
Confidence 5678899999984 47999999999999999876532 236899999999999999975
No 24
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=98.66 E-value=2.1e-08 Score=80.87 Aligned_cols=57 Identities=21% Similarity=0.414 Sum_probs=48.2
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC--------C-----CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA--------P-----SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~--------p-----~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|+.||++|.++.|++|+++|+||++++..+... + ...|||+.+|+++|.++|.+
T Consensus 43 ~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~~~~~~~~~~~~~~~P~L~~w~~r~~~~P~~ 112 (142)
T cd03190 43 FEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVYVQHFKCNLKRIRDYPNLWNYLRRLYQNPGV 112 (142)
T ss_pred HHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHhhhhcccccchhhhCchHHHHHHHHhcCchH
Confidence 456889999999999999999999999999776421 0 24799999999999999975
No 25
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=98.64 E-value=3.3e-08 Score=77.05 Aligned_cols=57 Identities=25% Similarity=0.483 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC----C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA----P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~----p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.++.|++|+++|+||+.++..+.+. + ...||++.+|+++|.++|..
T Consensus 41 ~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~v 103 (121)
T cd03209 41 PDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIFEPDCLDAFPNLKDFLERFEALPKI 103 (121)
T ss_pred HHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHhCccccccChHHHHHHHHHHHCHHH
Confidence 467889999999999999999999999998776442 1 36899999999999999975
No 26
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=98.63 E-value=3.4e-08 Score=78.08 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------C-CCCCccHHHHHHHHHhh
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------P-SSEYVNVSRWYKHIDAL 64 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------p-~~~yPnl~RWy~~I~s~ 64 (226)
...|..||.+|+++.|+.|++||+||+.++..+.+. + ...|||+.+||++|.++
T Consensus 64 ~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~~~~~~~~~~p~l~~W~~r~~~~ 124 (124)
T cd03202 64 RAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIVSPFPLLEEDDPVYDWFERCLDL 124 (124)
T ss_pred HHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHcCcccccccCChHHHHHHHHhcC
Confidence 467899999999999999999999999999887542 2 35899999999999763
No 27
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=98.63 E-value=3.2e-08 Score=76.52 Aligned_cols=57 Identities=21% Similarity=0.200 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|+.||++|..++|++|+++|+||++++..+... ....|||+.+|+++|.++|.+
T Consensus 41 ~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 109 (126)
T cd03185 41 LEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEEVGGVKLLDEEKTPLLAAWAERFLELEAV 109 (126)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHHHcCccccCcccCchHHHHHHHHHhccHH
Confidence 467899999999999999999999999998765441 125799999999999999975
No 28
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=98.60 E-value=3.3e-08 Score=72.74 Aligned_cols=52 Identities=25% Similarity=0.405 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------C------CCCCccHHHHHHHHH
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------P------SSEYVNVSRWYKHID 62 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------p------~~~yPnl~RWy~~I~ 62 (226)
...|..||++|+++.|+.|++||+||++++..+... + ...||++.+|+++|.
T Consensus 25 ~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 25 KKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQLILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHHhC
Confidence 467899999999999999999999999999886432 1 147999999999873
No 29
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=98.59 E-value=4.8e-08 Score=78.65 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcC--CCCeeecCCCCHHHHHHHchhccC----C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLL--TRSYITGYQASKDDITVYSALSKA----P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La--~rsYl~G~~~SiADIavf~~L~~~----p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|+.||++|. ++.|++|+++|+||+.++..+.+. + ...|||+.+|+++|.++|..
T Consensus 45 ~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~~~~~~~~~l~~~P~l~~~~~rv~~~P~v 109 (137)
T cd03208 45 NRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILMVEELDPSLLSDFPLLQAFKTRISNLPTI 109 (137)
T ss_pred HHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHHHHHhchhhhccChHHHHHHHHHHcCHHH
Confidence 578999999998 778999999999999999877552 1 35899999999999999975
No 30
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=98.58 E-value=4.3e-08 Score=83.29 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||.+|.++.|++|+++|+||++++..+... +...||++.||+++|.++|.+
T Consensus 138 ~~~l~~le~~L~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~P~l~~w~~r~~~rp~~ 199 (215)
T PRK13972 138 QRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPAT 199 (215)
T ss_pred HHHHHHHHHHhccCccccCCCCCHHHHHHHHHHHHHhhcCCcchhCHHHHHHHHHHHhCHHH
Confidence 357889999999999999999999999987765321 236799999999999999975
No 31
>PLN02473 glutathione S-transferase
Probab=98.57 E-value=4.6e-08 Score=82.65 Aligned_cols=57 Identities=21% Similarity=0.322 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC----C----CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA----P----SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~----p----~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|++++|++|+++|+||++++..+... . ..+||++.+||++|.++|.+
T Consensus 141 ~~~l~~le~~L~~~~~l~Gd~~t~ADi~~~~~~~~~~~~~~~~~~~~~~P~l~~w~~~~~~~p~~ 205 (214)
T PLN02473 141 DKVLDVYENRLATNRYLGGDEFTLADLTHMPGMRYIMNETSLSGLVTSRENLNRWWNEISARPAW 205 (214)
T ss_pred HHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHHHhccccHHHHhcCHHHHHHHHHHhcChhh
Confidence 346888999999999999999999999988776432 1 25899999999999999975
No 32
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=98.55 E-value=9e-08 Score=74.41 Aligned_cols=57 Identities=16% Similarity=0.329 Sum_probs=46.2
Q ss_pred HHHHHHHHhh-cCCCCeeecCCCCHHHHHHHchhccC-----C-CCCCccHHHHHHHHHh--hhcc
Q 027254 11 ATGLKKLDEY-LLTRSYITGYQASKDDITVYSALSKA-----P-SSEYVNVSRWYKHIDA--LLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~-La~rsYl~G~~~SiADIavf~~L~~~-----p-~~~yPnl~RWy~~I~s--~p~~ 67 (226)
.+.|..||.+ +.+++|++|+++|+||++++..+... + ...|||+.+|+++|.+ +|.+
T Consensus 51 ~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~~~p~~ 116 (126)
T cd03183 51 EESLDLLENYFLKDKPFLAGDEISIADLSAVCEIMQPEAAGYDVFEGRPKLAAWRKRVKEAGNPLF 116 (126)
T ss_pred HHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHhcCCcccccCchHHHHHHHHHHhcchhH
Confidence 3568889998 45578999999999999998766432 1 3689999999999999 7764
No 33
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=98.54 E-value=3.9e-08 Score=74.67 Aligned_cols=57 Identities=26% Similarity=0.423 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC----C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA----P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~----p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|++++|++|+++|+|||.++..+... . ...||++.+|+++|.++|.+
T Consensus 46 ~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 108 (113)
T cd03178 46 KRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRLEWIGIDDLDDFPNVKRWLDRIAARPAV 108 (113)
T ss_pred HHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHHHhccccchhhchHHHHHHHHHhhCHHH
Confidence 467889999999999999999999999998777542 1 35799999999999999864
No 34
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=98.54 E-value=7.7e-08 Score=75.70 Aligned_cols=57 Identities=16% Similarity=0.289 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCC---CCeeecCCCCHHHHHHHchhccC------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLT---RSYITGYQASKDDITVYSALSKA------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~---rsYl~G~~~SiADIavf~~L~~~------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.. +.|++|+++|+||+.++..+.+. ....||++.+|+++|.++|.+
T Consensus 41 ~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~~~~~~~~~~P~l~~~~~rv~~~p~v 106 (126)
T cd03210 41 PEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLVLAPGCLDAFPLLKAFVERLSARPKL 106 (126)
T ss_pred HHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHHhChHhhhcChHHHHHHHHHHhCcHH
Confidence 4678899999984 58999999999999998776432 136899999999999999975
No 35
>PLN02907 glutamate-tRNA ligase
Probab=98.52 E-value=7.8e-08 Score=96.77 Aligned_cols=56 Identities=30% Similarity=0.653 Sum_probs=48.7
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC--------CCCCCccHHHHHHHHHhhhc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA--------PSSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~--------p~~~yPnl~RWy~~I~s~p~ 66 (226)
...|+.||.+|+.++||+|+++|+||+++|..+... ....|||+.|||++|.++|.
T Consensus 96 ~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~L~~~~~~~~~~~~~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 96 ENACEYVDGYLASRTFLVGYSLTIADIAIWSGLAGSGQRWESLRKSKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHHHHHHHHHhccCCeecCCCCCHHHHHHHHHHHhhhhhhhcccccccCHHHHHHHHHHHhCCC
Confidence 457899999999999999999999999999887322 13589999999999999987
No 36
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.51 E-value=1.1e-07 Score=70.99 Aligned_cols=52 Identities=21% Similarity=0.381 Sum_probs=44.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC---C--CCCCccHHHHHHHHH
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA---P--SSEYVNVSRWYKHID 62 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~---p--~~~yPnl~RWy~~I~ 62 (226)
...|+.||++|++++|++|+++|+|||+++..+... . ..+|||+.+|+++|.
T Consensus 49 ~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 105 (105)
T cd03179 49 HAALAVLEAHLAGRDFLVGDALTIADIALAAYTHVADEGGFDLADYPAIRAWLARIE 105 (105)
T ss_pred HHHHHHHHHHHccCccccCCCCCHHHHHHHHHHHhccccCCChHhCccHHHHHHhhC
Confidence 456888999999999999999999999998777553 1 257999999999873
No 37
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=98.51 E-value=1.1e-07 Score=75.11 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=46.9
Q ss_pred HHHHHHHHhhcCC-CCeeecCCCCHHHHHHHchhccC-----------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLT-RSYITGYQASKDDITVYSALSKA-----------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~-rsYl~G~~~SiADIavf~~L~~~-----------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||.+|.+ +.|++|+++|+||++++..+... ....||++.||+++|.++|.+
T Consensus 36 ~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~P~l~~w~~rl~~rps~ 104 (121)
T cd03201 36 LDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSVPESLTSVKSYMKALFSRESF 104 (121)
T ss_pred HHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHCCchh
Confidence 3568899999985 78999999999999988743211 126899999999999999975
No 38
>PLN02395 glutathione S-transferase
Probab=98.50 E-value=1.1e-07 Score=80.17 Aligned_cols=56 Identities=18% Similarity=0.203 Sum_probs=47.7
Q ss_pred HHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC--------CCCCCccHHHHHHHHHhhhcc
Q 027254 12 TGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA--------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 12 ~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~--------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
+.|..||.+|+++.|++|+++|+||++++..+... ....|||+.||+++|.++|.+
T Consensus 141 ~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~~~~~p~L~~w~~~~~~rp~~ 204 (215)
T PLN02395 141 KVLDVYEARLSKSKYLAGDFVSLADLAHLPFTEYLVGPIGKAYLIKDRKHVSAWWDDISSRPAW 204 (215)
T ss_pred HHHHHHHHHhcCCccccCCCcCHHHHHHHHHHHHHhcccchhhhhccCchHHHHHHHHHcChHH
Confidence 57889999999999999999999999998765421 135799999999999999974
No 39
>PRK10542 glutathionine S-transferase; Provisional
Probab=98.49 E-value=1.6e-07 Score=78.35 Aligned_cols=57 Identities=14% Similarity=0.246 Sum_probs=49.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||.+|.++.|++|+++|+||++++..+... ....||++.+|+++|.++|.+
T Consensus 130 ~~~l~~le~~L~~~~~l~G~~~s~ADi~l~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 191 (201)
T PRK10542 130 EKKFQYVDEALADEQWICGQRFTIADAYLFTVLRWAYAVKLNLEGLEHIAAYMQRVAERPAV 191 (201)
T ss_pred HHHHHHHHHHhcCCCeeeCCCCcHHhHHHHHHHHHhhccCCCcccchHHHHHHHHHHcCHHH
Confidence 456889999999999999999999999998777543 135799999999999999975
No 40
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=98.48 E-value=1.2e-07 Score=69.06 Aligned_cols=51 Identities=29% Similarity=0.560 Sum_probs=44.4
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----C---CCCCccHHHHHHHH
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----P---SSEYVNVSRWYKHI 61 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p---~~~yPnl~RWy~~I 61 (226)
...++.||++|+.+.|+.|+++|+||+.++..+.+. + ...|||+.+|+++|
T Consensus 42 ~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~~~~~~~~~~p~l~~~~~~~ 100 (100)
T cd00299 42 AAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLGPLLGLLDEYPRLAAWYDRL 100 (100)
T ss_pred HHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhhhhhhhhccCccHHHHHHhC
Confidence 467899999999999999999999999999998652 2 36899999999875
No 41
>PRK10387 glutaredoxin 2; Provisional
Probab=98.48 E-value=2.4e-07 Score=77.83 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=48.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCC----CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAP----SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p----~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.+ .|++|+++|+||++++..+.+.. ...+||+.+||++|.++++.
T Consensus 148 ~~~l~~le~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~~~~~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 148 NADLRALDPLIVK-PNAVNGELSTDDIHLFPILRNLTLVKGIEWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHHHHHHHHHhcC-ccccCCCCCHHHHHHHHHHhcceeecCCCCCHHHHHHHHHHHHHhCC
Confidence 3567999999987 99999999999999999987641 23589999999999999975
No 42
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=98.48 E-value=1.1e-07 Score=73.12 Aligned_cols=57 Identities=32% Similarity=0.451 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC----C----CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA----P----SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~----p----~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|+.+.|+.|+++|+||++++..+... . ...|||+.+|+++|.++|.+
T Consensus 46 ~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~~p~~ 110 (123)
T cd03181 46 DRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLGFTYVFDKEWRAKYPNVTRWFNTVVNQPIF 110 (123)
T ss_pred HHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHHHHHHcCHHHHHhChHHHHHHHHHHcCHHH
Confidence 467899999999999999999999999999776542 1 15799999999999999975
No 43
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=98.47 E-value=1.5e-07 Score=78.95 Aligned_cols=57 Identities=18% Similarity=0.299 Sum_probs=48.3
Q ss_pred HHHHHHHHhhcCCC--CeeecCCCCHHHHHHHchhccC-----CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTR--SYITGYQASKDDITVYSALSKA-----PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~r--sYl~G~~~SiADIavf~~L~~~-----p~~~yPnl~RWy~~I~s~p~~ 67 (226)
.+.|..||++|.++ .|++|+++|+||+.++..+... ...+||++.+||++|.++|.+
T Consensus 135 ~~~l~~le~~L~~~~~~~l~G~~~T~ADi~~~~~l~~~~~~~~~~~~~p~l~~~~~~~~~rp~~ 198 (210)
T TIGR01262 135 SKGFAALEALLQPHAGAFCVGDTPTLADLCLVPQVYNAERFGVDLTPYPTLRRIAAALAALPAF 198 (210)
T ss_pred HHHHHHHHHHHhcCCCCEeeCCCCCHHHHHHHHHHHHHHHcCCCcccchHHHHHHHHHhcCHHH
Confidence 35689999999874 4999999999999999887542 236899999999999999975
No 44
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=98.46 E-value=1.4e-07 Score=73.69 Aligned_cols=57 Identities=14% Similarity=0.367 Sum_probs=48.1
Q ss_pred HHHHHHHHhhcCC--CCeeecCCCCHHHHHHHchhccC-----------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLT--RSYITGYQASKDDITVYSALSKA-----------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~--rsYl~G~~~SiADIavf~~L~~~-----------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.+ ++|++|+++|+||++++..+... ....||++.+|+++|.++|.+
T Consensus 38 ~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~~p~v 107 (124)
T cd03184 38 RSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALKLLLGYEFPLDRFPKLKKWMDAMKEDPAV 107 (124)
T ss_pred HHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHHhhccccCCcccChHHHHHHHHhccChHH
Confidence 4678899999985 78999999999999998776431 236899999999999999864
No 45
>PTZ00057 glutathione s-transferase; Provisional
Probab=98.44 E-value=1.6e-07 Score=79.60 Aligned_cols=57 Identities=16% Similarity=0.260 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCCC--CeeecCCCCHHHHHHHchhccC----C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTR--SYITGYQASKDDITVYSALSKA----P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~r--sYl~G~~~SiADIavf~~L~~~----p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
++.|..||++|+++ .|++|+++|+||++++..+... + ..+|||+.+|+++|.++|.+
T Consensus 129 ~~~l~~le~~L~~~~~~~l~Gd~~T~AD~~l~~~~~~~~~~~~~~l~~~P~l~~~~~r~~~~P~~ 193 (205)
T PTZ00057 129 PKWSGYFENILKKNHCNYFVGDNLTYADLAVFNLYDDIETKYPNSLKNFPLLKAHNEFISNLPNI 193 (205)
T ss_pred HHHHHHHHHHHHhCCCCeeeCCcccHHHHHHHHHHHHHHHhChhhhccChhHHHHHHHHHhChHH
Confidence 56788999999865 7999999999999999876431 2 36899999999999999975
No 46
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.4e-07 Score=78.34 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCCC-----CCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPS-----SEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p~-----~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..+|.+|+++.|++|+++|+||++++..+..... ..||++.+||+++..+|.+
T Consensus 137 ~~~l~~le~~L~~~~~l~G~~~tiAD~~~~~~~~~~~~~~~~~~~~p~l~~w~~r~~~rp~~ 198 (211)
T COG0625 137 RALLALLEALLADGPYLAGDRFTIADIALAPLLWRLALLGEELADYPALKAWYERVLARPAF 198 (211)
T ss_pred HHHHHHHHHHhccCCcccCCCCCHHHHHHHHHHHHhhhcCcccccChHHHHHHHHHHcCCch
Confidence 46788999999999999999999999999988875421 3599999999999988863
No 47
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=98.42 E-value=1.7e-07 Score=73.50 Aligned_cols=56 Identities=18% Similarity=0.298 Sum_probs=46.5
Q ss_pred HHHHHHHHhhcC---CCCeeecCCCCHHHHHHHchhcc--------C--C-CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLL---TRSYITGYQASKDDITVYSALSK--------A--P-SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La---~rsYl~G~~~SiADIavf~~L~~--------~--p-~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||+.|. ++.|++| ++|+||++++..+.. . . ..+|||+.+|+++|.++|.+
T Consensus 36 ~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~~~~~~~~~~~~~~~~~P~l~~W~~~~~~rp~~ 105 (120)
T cd03203 36 AAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERFQIFLSELFNYDITEGRPNLAAWIEEMNKIEAY 105 (120)
T ss_pred HHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHHHHHHHHhcCccccccCcHHHHHHHHHhcchHH
Confidence 567889999997 4899999 999999999877642 1 1 25899999999999999864
No 48
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=98.39 E-value=3.3e-07 Score=77.86 Aligned_cols=57 Identities=9% Similarity=-0.001 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----CC--CCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----PS--SEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p~--~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.++.|++|+++|+||++++..+... +. ..|||+.+||++|.++|.+
T Consensus 133 ~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~~~~~~~~~~~~~~p~l~~w~~~~~~rp~~ 196 (211)
T PRK09481 133 REELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWRLPVLGIELSGPGAKELKGYMTRVFERDSF 196 (211)
T ss_pred HHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHHHHhcCCCCCCCCChhHHHHHHHHhccHHH
Confidence 356789999999999999999999999999877542 12 4799999999999999975
No 49
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=98.38 E-value=2.8e-07 Score=81.38 Aligned_cols=57 Identities=26% Similarity=0.404 Sum_probs=49.5
Q ss_pred HHHHHHHHhhcC------------------CCCeeecCCCCHHHHHHHchhccC----------C-CCCCccHHHHHHHH
Q 027254 11 ATGLKKLDEYLL------------------TRSYITGYQASKDDITVYSALSKA----------P-SSEYVNVSRWYKHI 61 (226)
Q Consensus 11 ~~~L~~Ln~~La------------------~rsYl~G~~~SiADIavf~~L~~~----------p-~~~yPnl~RWy~~I 61 (226)
...|+.||++|. ++.|++|+++|+||++++..+... . ..+||+|.+|+++|
T Consensus 129 ~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd~~tlaD~~l~p~l~~l~~~~~~~~~~~i~~~~p~l~~w~~~~ 208 (236)
T TIGR00862 129 LKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGDELTLADCNLLPKLHIVKVVAKKYRNFDIPAEFTGVWRYLSNA 208 (236)
T ss_pred HHHHHHHHHHHhccccccccccccccccccCCCcccCCccchhhHHHHHHHHHHHHHHHHHhCcCccccCchHHHHHHHH
Confidence 467899999997 578999999999999999987542 1 47999999999999
Q ss_pred Hhhhcc
Q 027254 62 DALLRI 67 (226)
Q Consensus 62 ~s~p~~ 67 (226)
.+++.+
T Consensus 209 ~~~~sf 214 (236)
T TIGR00862 209 YAREEF 214 (236)
T ss_pred hccchH
Confidence 999976
No 50
>PRK11752 putative S-transferase; Provisional
Probab=98.35 E-value=4.5e-07 Score=80.49 Aligned_cols=57 Identities=26% Similarity=0.427 Sum_probs=47.8
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|+++.|++|+++|+||++++..+... ....||++.+||++|.++|.+
T Consensus 184 ~~~L~~le~~L~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~ 252 (264)
T PRK11752 184 KRQLDVLDKQLAEHEYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAV 252 (264)
T ss_pred HHHHHHHHHHhccCCCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHH
Confidence 457889999999999999999999999998654211 135799999999999999975
No 51
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.33 E-value=4.5e-07 Score=75.22 Aligned_cols=48 Identities=23% Similarity=0.454 Sum_probs=38.9
Q ss_pred HhhcCCCCeeecCCCCHHHHHHHchhccC-------CCCCCccHHHHHHHHHhhh
Q 027254 18 DEYLLTRSYITGYQASKDDITVYSALSKA-------PSSEYVNVSRWYKHIDALL 65 (226)
Q Consensus 18 n~~La~rsYl~G~~~SiADIavf~~L~~~-------p~~~yPnl~RWy~~I~s~p 65 (226)
+..+.++.|++|++||+||+++|+.|... ...+||||.+||++|++.-
T Consensus 93 ~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~~~~~Dl~~~p~I~~W~eRm~~~v 147 (149)
T cd03197 93 AALGKDRQFHGGSKPNLADLAVYGVLRSVEGHPAFKDMVEETKIGEWYERMDAAV 147 (149)
T ss_pred HHhcCCCCccCCCCCCHHHHHHHHHHHHHHHhccccchhhCcCHHHHHHHHHHHh
Confidence 34345678999999999999999998653 2348999999999998743
No 52
>PRK10357 putative glutathione S-transferase; Provisional
Probab=98.29 E-value=7.5e-07 Score=74.59 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=47.5
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC------C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA------P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~------p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.++. ++|+++|+||++++..+... + ...|||+.+|+++|.++|.+
T Consensus 131 ~~~l~~le~~L~~~~-l~Gd~~t~ADi~l~~~l~~~~~~~~~~~~~~~~p~l~~~~~~i~~rp~~ 194 (202)
T PRK10357 131 NRSLDALEGYLVDGT-LKTDTVNLATIAIACAVGYLNFRRVAPGWCVDRPHLVKLVENLFQRESF 194 (202)
T ss_pred HHHHHHHHHhhccCc-ccCCCcCHHHHHHHHHHHHHHhcccCcchhhcChHHHHHHHHHhcChhh
Confidence 456899999999878 99999999999998776531 1 25799999999999999976
No 53
>PLN02378 glutathione S-transferase DHAR1
Probab=98.28 E-value=5.9e-07 Score=76.76 Aligned_cols=57 Identities=19% Similarity=0.290 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcC--CCCeeecCCCCHHHHHHHchhcc-----C------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLL--TRSYITGYQASKDDITVYSALSK-----A------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La--~rsYl~G~~~SiADIavf~~L~~-----~------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|. ++.|++|+++|+||++++..+.. . ....|||+.+||++|.++|.+
T Consensus 124 ~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~~~~~~~~~~~~~p~l~~w~~~~~~rpa~ 193 (213)
T PLN02378 124 LVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVALGHFKSWSVPESFPHVHNYMKTLFSLDSF 193 (213)
T ss_pred HHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHHHHhcCCCchhHhHHHHHHHHHHhcCCCe
Confidence 356899999998 46899999999999999888532 1 125799999999999999975
No 54
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=8.2e-07 Score=77.36 Aligned_cols=56 Identities=30% Similarity=0.548 Sum_probs=49.6
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC--------CCCCCccHHHHHHHHHhhhc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA--------PSSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~--------p~~~yPnl~RWy~~I~s~p~ 66 (226)
...|..+|.+|.++.|++|+++|+||+.+.+.+... ...+|||+.||+++|+++|.
T Consensus 139 ~~~~~~~e~~l~~~~yl~g~~~tlADl~~~~~~~~~~~~~~~~~~~~~~p~v~~W~~~~~~~P~ 202 (226)
T KOG0867|consen 139 RKALDNLERFLKTQVYLAGDQLTLADLSLASTLSQFQGKFATEKDFEKYPKVARWYERIQKRPA 202 (226)
T ss_pred HHHHHHHHHHHccCCcccCCcccHHHHHHhhHHHHHhHhhhhhhhhhhChHHHHHHHHHHhCcc
Confidence 467899999999999999999999999999988764 23689999999999999875
No 55
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=98.27 E-value=4.9e-07 Score=67.86 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=43.2
Q ss_pred HHHHHHHHhhcCC--CCeeecCCCCHHHHHHHchhccC----C---CCCCccHHHHHHHH
Q 027254 11 ATGLKKLDEYLLT--RSYITGYQASKDDITVYSALSKA----P---SSEYVNVSRWYKHI 61 (226)
Q Consensus 11 ~~~L~~Ln~~La~--rsYl~G~~~SiADIavf~~L~~~----p---~~~yPnl~RWy~~I 61 (226)
...|..||++|.+ +.|+.|+++|+||++++..+... + ...||++.+|+++|
T Consensus 45 ~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 104 (104)
T cd03192 45 PKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLDYLLYLDPKLLLKKYPKLKALRERV 104 (104)
T ss_pred HHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHHHHHhhCchhhHHhChhHHHHHHhC
Confidence 4678899999987 88999999999999999887542 2 35799999999875
No 56
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.23 E-value=7.6e-07 Score=69.34 Aligned_cols=55 Identities=11% Similarity=-0.029 Sum_probs=43.0
Q ss_pred HHHHHHHhhc---CCCCeeecCCCCHHHHHHHchhccC---CCCCCccHHHHHHHHHhhhcc
Q 027254 12 TGLKKLDEYL---LTRSYITGYQASKDDITVYSALSKA---PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 12 ~~L~~Ln~~L---a~rsYl~G~~~SiADIavf~~L~~~---p~~~yPnl~RWy~~I~s~p~~ 67 (226)
+.+..+|.+| ++++|++|+ +|+||+.++..+.+. .....||+.+|+++|.++|.+
T Consensus 48 ~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~~~~~~~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 48 RIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRTYGLPLSPAAQAYVDALLAHPAM 108 (114)
T ss_pred HHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHCCHHH
Confidence 4566666666 477899999 999999999777643 222349999999999999865
No 57
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=98.20 E-value=2e-06 Score=73.36 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=47.3
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCC---CCCCc-cHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAP---SSEYV-NVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p---~~~yP-nl~RWy~~I~s~p~~ 67 (226)
...|+.|+.+|.++.|+.| .+|+||++++..+.+.. ...+| |+.+||++|+++++.
T Consensus 147 ~~~l~~le~~L~~~~~l~g-~~TiADi~l~~~l~~~~~~~~~~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 147 NADLEELDKLIDGPNAVNG-ELSEDDILVFPLLRNLTLVAGINWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHHHHHHHHHHhCccccCC-CCCHHHHHHHHHhcCeeeecCCCCChHHHHHHHHHHHHhCC
Confidence 4568899999999999965 69999999999988753 22588 999999999999863
No 58
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=98.11 E-value=3.3e-06 Score=75.54 Aligned_cols=57 Identities=19% Similarity=0.299 Sum_probs=47.4
Q ss_pred HHHHHHHHhhcCC-CCeeecCCCCHHHHHHHchhccC-----------CCCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLT-RSYITGYQASKDDITVYSALSKA-----------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~-rsYl~G~~~SiADIavf~~L~~~-----------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|.. +.|++|+++|+||++++..+... ....|||+.+||++|.++|.+
T Consensus 177 ~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~~~~~~~i~~~~P~L~~w~~ri~~rps~ 245 (265)
T PLN02817 177 LDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALGHYKNWSVPDSLPFVKSYMKNIFSMESF 245 (265)
T ss_pred HHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHhcchhH
Confidence 3568899999984 68999999999999998865321 135799999999999999975
No 59
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.11 E-value=1.7e-06 Score=64.98 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-------C-CCCCccHHHHHHHH
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-------P-SSEYVNVSRWYKHI 61 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-------p-~~~yPnl~RWy~~I 61 (226)
...|..||++|+++.| +++|+||++++..+.+. + ...|||+.|||++|
T Consensus 43 ~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~~~~~~~~~~p~l~~w~~rm 98 (98)
T cd03205 43 ERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRHPDLDWRAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHccCcchhhhChHHHHHHHhC
Confidence 4678999999999999 89999999988877432 1 36899999999875
No 60
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=98.00 E-value=4.3e-06 Score=66.61 Aligned_cols=50 Identities=24% Similarity=0.339 Sum_probs=42.5
Q ss_pred HHHHHHHhhcCCCCeeecCCCCHHHHHHHchhcc---C-----C----CCCCccHHHHHHHH
Q 027254 12 TGLKKLDEYLLTRSYITGYQASKDDITVYSALSK---A-----P----SSEYVNVSRWYKHI 61 (226)
Q Consensus 12 ~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~---~-----p----~~~yPnl~RWy~~I 61 (226)
..|+.|+..|.+++|+.|++||.+|+++|+.+.. . + ..+|||+.+|++||
T Consensus 64 ~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~~~~~pnL~~y~~Ri 125 (126)
T cd03211 64 QCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEKVKKYSNLLAFCRRI 125 (126)
T ss_pred HHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHHHHhCcHHHHHHHhc
Confidence 5578999999999999999999999999987633 1 1 25899999999987
No 61
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=97.99 E-value=3.7e-06 Score=65.27 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=45.2
Q ss_pred HHHHHHHHhhcC-CCCeeecCCCCHHHHHHHchhccCCCC----CCccHHHHHHHHHhhhccc
Q 027254 11 ATGLKKLDEYLL-TRSYITGYQASKDDITVYSALSKAPSS----EYVNVSRWYKHIDALLRIS 68 (226)
Q Consensus 11 ~~~L~~Ln~~La-~rsYl~G~~~SiADIavf~~L~~~p~~----~yPnl~RWy~~I~s~p~~~ 68 (226)
...+..+|.+|. +++|+.| .+|+||+.++..+.+.... . ||+.+|.++|.++|.+.
T Consensus 48 ~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~~~~~~~g~~l~-p~l~ay~~r~~~rPa~~ 108 (114)
T cd03195 48 EKLIAVAEALLPPGAANLFG-EWCIADTDLALMLNRLVLNGDPVP-ERLRDYARRQWQRPSVQ 108 (114)
T ss_pred HHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHCCHHHH
Confidence 466778899995 5589999 6999999999888764211 3 89999999999999753
No 62
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=97.94 E-value=1.2e-05 Score=65.21 Aligned_cols=54 Identities=22% Similarity=0.292 Sum_probs=45.1
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhcc-----CC-------CCCCccHHHHHHHHHhh
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSK-----AP-------SSEYVNVSRWYKHIDAL 64 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~-----~p-------~~~yPnl~RWy~~I~s~ 64 (226)
...|..|+..|.++.|+.|++||.+|+.+|+.+.. .+ ..+|||+.+|++||.+.
T Consensus 70 ~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~~~~~~pnL~~~~~ri~~~ 135 (137)
T cd03212 70 KECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQNHLKQCPNLCRFCDRILSL 135 (137)
T ss_pred HHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHHHHHHCcHHHHHHHHHHHh
Confidence 35678899999999999999999999999877642 12 25899999999999863
No 63
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=97.71 E-value=2.9e-05 Score=46.99 Aligned_cols=22 Identities=36% Similarity=0.653 Sum_probs=13.0
Q ss_pred CCCCCcH-HHHHHHHHHHHHHHh
Q 027254 107 LFGEETE-EEKKAAEARAASVKA 128 (226)
Q Consensus 107 lfg~~~e-e~~~~~~~~~~~~~~ 128 (226)
|||||+| |++++.+.|++++++
T Consensus 1 LFGSddEeed~ea~r~reeRla~ 23 (28)
T PF10587_consen 1 LFGSDDEEEDEEAERIREERLAA 23 (28)
T ss_pred CCCCccccccHHHHHHHHHHHHH
Confidence 8999877 444544444444444
No 64
>PRK15113 glutathione S-transferase; Provisional
Probab=97.67 E-value=4.7e-05 Score=64.79 Aligned_cols=56 Identities=7% Similarity=-0.022 Sum_probs=44.7
Q ss_pred HHHHHHHHhhcCC-CCeeecCCCCHHHHHHHchhccCC---CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLT-RSYITGYQASKDDITVYSALSKAP---SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~-rsYl~G~~~SiADIavf~~L~~~p---~~~yPnl~RWy~~I~s~p~~ 67 (226)
...|..||++|++ ..|++|+ +|+||++++..+.+.. ..-.|++.+|++||.++|.+
T Consensus 143 ~~~l~~le~~L~~~~~~l~G~-~TlADi~l~~~l~~~~~~~~~~~p~l~~~~~r~~~rp~~ 202 (214)
T PRK15113 143 EKLFAVAERLLAPGQPNLFGE-WCIADTDLALMLNRLVLHGDEVPERLADYATFQWQRASV 202 (214)
T ss_pred HHHHHHHHHHHhcCCCEeeCC-ccHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCHHH
Confidence 3568899999985 4699996 9999999998875431 11129999999999999975
No 65
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.40 E-value=0.00015 Score=65.87 Aligned_cols=57 Identities=28% Similarity=0.503 Sum_probs=49.3
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-C------------CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-P------------SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-p------------~~~yPnl~RWy~~I~s~p~~ 67 (226)
-+.|..||..|+.+.|++|+++|-||+.+|.+|-.- + ..+|||+..|++.+-.+|++
T Consensus 211 F~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~ 280 (324)
T COG0435 211 FEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGF 280 (324)
T ss_pred HHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCccc
Confidence 367999999999999999999999999999998542 1 25799999999999888764
No 66
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00074 Score=61.02 Aligned_cols=57 Identities=21% Similarity=0.432 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcCCCC--eeecCCCCHHHHHHHchhccC-C-------------CCCCccHHHHHHHHHh-hhcc
Q 027254 11 ATGLKKLDEYLLTRS--YITGYQASKDDITVYSALSKA-P-------------SSEYVNVSRWYKHIDA-LLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La~rs--Yl~G~~~SiADIavf~~L~~~-p-------------~~~yPnl~RWy~~I~s-~p~~ 67 (226)
-++|..+|++|..+. |++|+++|.|||.+|.++-.- + ...|||+.-|...|-. .+++
T Consensus 209 fe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~ir~~Yp~l~~~lk~iY~~~~~~ 282 (319)
T KOG2903|consen 209 FEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTIRDEYPNLHNWLKNIYWNIPGF 282 (319)
T ss_pred HHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhhhccCcHHHHHHHHHHhhccch
Confidence 367899999999988 999999999999999987542 1 2589999999988866 5654
No 67
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=96.77 E-value=0.00079 Score=58.88 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=48.3
Q ss_pred HHHHHHHhhcCC---CCeeecCCCCHHHHHHHchhccC-----------CCCCCccHHHHHHHHHhhhcc
Q 027254 12 TGLKKLDEYLLT---RSYITGYQASKDDITVYSALSKA-----------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 12 ~~L~~Ln~~La~---rsYl~G~~~SiADIavf~~L~~~-----------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
..|+.||+||.. +.||.|+++|.||..+..-|+.. .++.+++|.||+.++-++..|
T Consensus 130 ~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~va~k~yk~~~IP~~lt~V~rYl~~~ya~d~F 199 (221)
T KOG1422|consen 130 KELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKVAAKHYKNFEIPASLTGVWRYLKNAYARDEF 199 (221)
T ss_pred HHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHhHHHh
Confidence 457899999986 78999999999999999888652 247899999999999998876
No 68
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0012 Score=56.93 Aligned_cols=56 Identities=18% Similarity=0.350 Sum_probs=49.1
Q ss_pred HHHHHHHhhcCCCC--eeecCCCCHHHHHHHchhccCC-----CCCCccHHHHHHHHHhhhcc
Q 027254 12 TGLKKLDEYLLTRS--YITGYQASKDDITVYSALSKAP-----SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 12 ~~L~~Ln~~La~rs--Yl~G~~~SiADIavf~~L~~~p-----~~~yPnl~RWy~~I~s~p~~ 67 (226)
.|+..||..|..++ |.+|+..|+||+++...+..+. ...||-+.|-++.+...|.|
T Consensus 139 kGF~ALEklL~~~aGkycvGDevtiADl~L~pqv~nA~rf~vdl~PYPti~ri~e~l~elpaF 201 (217)
T KOG0868|consen 139 KGFTALEKLLKSHAGKYCVGDEVTIADLCLPPQVYNANRFHVDLTPYPTITRINEELAELPAF 201 (217)
T ss_pred HhHHHHHHHHHHccCCcccCceeehhhhccchhhhhhhhccccCCcCchHHHHHHHHHhCHHH
Confidence 67888999997654 9999999999999999987752 36899999999999999987
No 69
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.72 E-value=0.00051 Score=67.26 Aligned_cols=55 Identities=29% Similarity=0.610 Sum_probs=46.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC----C----CCCCccHHHHHHHHHhhh
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA----P----SSEYVNVSRWYKHIDALL 65 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~----p----~~~yPnl~RWy~~I~s~p 65 (226)
...+..|+.+|.-++||+|+++|+||+++|++|++. + ...|.|+.|||+.....+
T Consensus 94 s~~~~~ld~~l~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~~k~~~~v~Rw~~~~~~~~ 156 (712)
T KOG1147|consen 94 SSSLSELDKFLVLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKAKKDYQNVERWYDLPEFQE 156 (712)
T ss_pred HHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHhcccchHHHHHhhCCchhhhhhcCcHhHHH
Confidence 356889999999999999999999999999999874 1 248999999999444443
No 70
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.38 E-value=0.0041 Score=55.14 Aligned_cols=58 Identities=19% Similarity=0.250 Sum_probs=49.0
Q ss_pred cHHHHHHHHhhcC-CCCeeecCCCCHHHHHHHchhccC-------------CCCCCccHHHHHHHHHhhhcc
Q 027254 10 SATGLKKLDEYLL-TRSYITGYQASKDDITVYSALSKA-------------PSSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 10 s~~~L~~Ln~~La-~rsYl~G~~~SiADIavf~~L~~~-------------p~~~yPnl~RWy~~I~s~p~~ 67 (226)
..+.|..||+.|. +++|..|++++..|++++..+.+. +...||.+.+|.++|.+.+..
T Consensus 134 ~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V 205 (231)
T KOG0406|consen 134 LREALKVLEEELGKGKDFFGGETIGFVDIAIGPSFERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAV 205 (231)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhhHHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhH
Confidence 3578999999999 899999999999999998655431 346999999999999998853
No 71
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=96.29 E-value=0.0042 Score=56.25 Aligned_cols=59 Identities=14% Similarity=0.271 Sum_probs=48.0
Q ss_pred HHHHHHHhhcCC----CCeeecCCCCHHHHHHHchhccC----------CCCCCccHHHHHHHHHhhhcccCC
Q 027254 12 TGLKKLDEYLLT----RSYITGYQASKDDITVYSALSKA----------PSSEYVNVSRWYKHIDALLRISGV 70 (226)
Q Consensus 12 ~~L~~Ln~~La~----rsYl~G~~~SiADIavf~~L~~~----------p~~~yPnl~RWy~~I~s~p~~~~~ 70 (226)
..|.++|..|.. ..|++|+.+|+|||.+...|+.. ...+-||+..||.+++.++.|...
T Consensus 212 ~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~yw~~gsrpnle~Yf~rvrrR~sf~kv 284 (325)
T KOG4420|consen 212 MVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKKYWEDGSRPNLESYFERVRRRFSFRKV 284 (325)
T ss_pred HHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHHhcccCCCccHHHHHHHHHhhhHHHHh
Confidence 346677788877 67999999999999999988763 135889999999999999876333
No 72
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=96.07 E-value=0.0042 Score=56.14 Aligned_cols=52 Identities=21% Similarity=0.525 Sum_probs=45.9
Q ss_pred HHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC--C---------CCCCccHHHHHHHHHh
Q 027254 12 TGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA--P---------SSEYVNVSRWYKHIDA 63 (226)
Q Consensus 12 ~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~--p---------~~~yPnl~RWy~~I~s 63 (226)
+.|+.+.++|.++.|+-|+++|-+|+++|+.|... | ..+|||+..+-+||+.
T Consensus 210 rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP~~~~i~d~le~d~p~l~eYceRIr~ 272 (281)
T KOG4244|consen 210 RDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYPFRSHISDLLEGDFPNLLEYCERIRK 272 (281)
T ss_pred HHHHHHHHHhCCCccccCCCCCcceeeehhhhhheeccCCCcHHHHHhhhchHHHHHHHHHHH
Confidence 45778889999999999999999999999999764 2 2689999999999987
No 73
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.016 Score=50.57 Aligned_cols=57 Identities=14% Similarity=0.320 Sum_probs=47.2
Q ss_pred HHHHHHHHhhcC--CCCeeecCCCCHHHHHHHchhccC-----C--CCCCccHHHHHHHHHhhhcc
Q 027254 11 ATGLKKLDEYLL--TRSYITGYQASKDDITVYSALSKA-----P--SSEYVNVSRWYKHIDALLRI 67 (226)
Q Consensus 11 ~~~L~~Ln~~La--~rsYl~G~~~SiADIavf~~L~~~-----p--~~~yPnl~RWy~~I~s~p~~ 67 (226)
...++.+++.|. .+.|++|+.+|-||+.++..+... + ...||++..+..+|.++|..
T Consensus 129 ~~~~~~~~~~L~~~~sgflvGd~lT~aDl~i~e~l~~l~~~~~~~~~~~~P~L~a~~~kv~~~p~i 194 (206)
T KOG1695|consen 129 PKYFKILEKILKKNKSGFLVGDKLTWADLVIAEHLDTLEELLDPSALDHFPKLKAFKERVSSIPNI 194 (206)
T ss_pred HHHHHHHHHHHHhCCCCeeecCcccHHHHHHHHHHHHHHHhcCchhhccChHHHHHHHHHhcCchH
Confidence 456889999998 456999999999999999887542 2 24679999999999999964
No 74
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=92.57 E-value=0.11 Score=47.68 Aligned_cols=45 Identities=20% Similarity=0.543 Sum_probs=38.5
Q ss_pred CCCCeeecCCCCHHHHHHHchhccCC-------CCCCccHHHHHHHHHhhhc
Q 027254 22 LTRSYITGYQASKDDITVYSALSKAP-------SSEYVNVSRWYKHIDALLR 66 (226)
Q Consensus 22 a~rsYl~G~~~SiADIavf~~L~~~p-------~~~yPnl~RWy~~I~s~p~ 66 (226)
.+|+|+.|.+|++||+++|..|.+.. .-+..+|..||.+|.++-.
T Consensus 306 knr~flGG~kPnLaDLsvfGvl~sm~gc~afkd~~q~t~I~eW~~rmealV~ 357 (370)
T KOG3029|consen 306 KNRPFLGGKKPNLADLSVFGVLRSMEGCQAFKDCLQNTSIGEWYYRMEALVE 357 (370)
T ss_pred CCCCccCCCCCchhhhhhhhhhhHhhhhhHHHHHHhcchHHHHHHHHHHHHh
Confidence 67899999999999999999997642 1367899999999998875
No 75
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=92.22 E-value=0.25 Score=40.26 Aligned_cols=55 Identities=18% Similarity=0.374 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCC---CCCC-ccHHHHHHHHHhhhcc
Q 027254 12 TGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAP---SSEY-VNVSRWYKHIDALLRI 67 (226)
Q Consensus 12 ~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p---~~~y-Pnl~RWy~~I~s~p~~ 67 (226)
..|..|+..|.....+.| ++|+.||.+|..|.+.. .-+| |+|.+|.++|+...+.
T Consensus 66 ~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~Ltivkgi~~P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 66 ADLEELEPLLASPNAVNG-ELSIDDIILFPILRSLTIVKGIQWPPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHHCTCTTS---HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhhhhccCCcCCHHHHHHHHHHHHHcCC
Confidence 456777777787667777 99999999999997642 2255 6899999999988763
No 76
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.01 E-value=0.36 Score=42.69 Aligned_cols=53 Identities=25% Similarity=0.394 Sum_probs=43.6
Q ss_pred HHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----C-------CCCCccHHHHHHHHHhh
Q 027254 12 TGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----P-------SSEYVNVSRWYKHIDAL 64 (226)
Q Consensus 12 ~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p-------~~~yPnl~RWy~~I~s~ 64 (226)
...+.|...|..++|+.|++||-.|.-+|+.+... | .++|+|+...-+||...
T Consensus 184 kc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 184 KCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANILKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34667888999999999999999999999988652 2 26899998888888653
No 77
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=89.14 E-value=0.9 Score=36.90 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCC---CCCC-ccHHHHHHHHHhhhc
Q 027254 13 GLKKLDEYLLTRSYITGYQASKDDITVYSALSKAP---SSEY-VNVSRWYKHIDALLR 66 (226)
Q Consensus 13 ~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p---~~~y-Pnl~RWy~~I~s~p~ 66 (226)
.|..|+..|...+.+. ..+|+.||-+|..|.+.. .-.| |+|.+|.++|+...+
T Consensus 68 ~L~~l~~ll~~~~~~n-~~ls~DDi~lFp~LR~Lt~vkgi~~P~~V~~Y~~~~s~~t~ 124 (128)
T cd03199 68 LLEELDPLILSSEAVN-GQLSTDDIILFPILRNLTLVKGLVFPPKVKAYLERMSALTK 124 (128)
T ss_pred HHHHHHHHHcCccccC-CcCCHHHHHHHHHHhhhhhhcCCCCCHHHHHHHHHHHHHhC
Confidence 4555666665545544 489999999999998642 2255 689999999998775
No 78
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.86 E-value=1.1 Score=41.53 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccC-----C-------CCCCccHHHHHHHHHhhh
Q 027254 11 ATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKA-----P-------SSEYVNVSRWYKHIDALL 65 (226)
Q Consensus 11 ~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~-----p-------~~~yPnl~RWy~~I~s~p 65 (226)
...+..|...|.++.|+.|++||--|..+|+.+... | ...++|+.|+.++|++.-
T Consensus 169 ska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~Lp~~~Lq~~l~~~~NL~~~~~~i~s~~ 235 (313)
T KOG3028|consen 169 SKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVALPNDSLQVHLLAHKNLVRYVERIRSLY 235 (313)
T ss_pred HHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccCCchhHHHHHHhcchHHHHHHHHHHHH
Confidence 356888999999999999999999999999998761 2 134899999999999965
No 79
>PF10587 EF-1_beta_acid: Eukaryotic elongation factor 1 beta central acidic region; InterPro: IPR018940 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This region is found in the centre of the beta subunits of Elongation factor-1. More information about these proteins can be found at Protein of the Month: Elongation Factors [].
Probab=84.21 E-value=1.1 Score=27.17 Aligned_cols=20 Identities=35% Similarity=0.410 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHHHHHHHhhh
Q 027254 111 ETEEEKKAAEARAASVKASA 130 (226)
Q Consensus 111 ~~ee~~~~~~~~~~~~~~~~ 130 (226)
+|+|.++.+++|.++|+++|
T Consensus 9 ed~ea~r~reeRla~y~aKK 28 (28)
T PF10587_consen 9 EDEEAERIREERLAAYAAKK 28 (28)
T ss_pred ccHHHHHHHHHHHHHHHccC
Confidence 57899999999999999853
No 80
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=81.48 E-value=1.9 Score=36.24 Aligned_cols=45 Identities=22% Similarity=0.187 Sum_probs=36.9
Q ss_pred cHHHHHHHHhhcCCC---CeeecCC-CCHHHHHHHchhccCCCCCCccH
Q 027254 10 SATGLKKLDEYLLTR---SYITGYQ-ASKDDITVYSALSKAPSSEYVNV 54 (226)
Q Consensus 10 s~~~L~~Ln~~La~r---sYl~G~~-~SiADIavf~~L~~~p~~~yPnl 54 (226)
+.+.|..|+.+|... .|+.|+. ||-.|+-+|+.|...-..++|+-
T Consensus 113 a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~l~p~LP~~ 161 (168)
T PF11801_consen 113 AMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALLLVPELPDP 161 (168)
T ss_pred HHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHhcccCCcH
Confidence 356788999999999 9999987 99999999999986543456654
No 81
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=71.09 E-value=22 Score=26.16 Aligned_cols=68 Identities=22% Similarity=0.283 Sum_probs=45.2
Q ss_pred ceeEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCcce
Q 027254 138 SSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQS 217 (226)
Q Consensus 138 s~v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~VqS 217 (226)
|++++.++|. .++.+.+.+. .++|..+...... | ++.+|+|.+ +++++.+.+-.|+.+ ++|-|
T Consensus 6 ss~vV~~~p~----~~~~v~~~l~--~~~gvEVh~~~~~--G------KiVVtiE~~--~~~~~~~~~~~i~~l-~GVls 68 (79)
T PF03927_consen 6 SSLVVHARPE----RLEEVAEALA--AIPGVEVHAVDED--G------KIVVTIEAE--SSEEEVDLIDAINAL-PGVLS 68 (79)
T ss_dssp EEEEEEE-CC----CHHHHHHHHC--CSTTEEEEEEETT--T------EEEEEEEES--SHHHHHHHHHHHCCS-TTEEE
T ss_pred EEEEEEECch----hHHHHHHHHH--cCCCcEEEeeCCC--C------eEEEEEEeC--ChHHHHHHHHHHHcC-CCceE
Confidence 7899999994 5666666655 5579988755433 2 366777775 345555554447788 89999
Q ss_pred eeeee
Q 027254 218 CDIVA 222 (226)
Q Consensus 218 ~di~~ 222 (226)
+.++-
T Consensus 69 a~lvY 73 (79)
T PF03927_consen 69 ASLVY 73 (79)
T ss_dssp EEESS
T ss_pred EEEEE
Confidence 87764
No 82
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional
Probab=63.61 E-value=35 Score=25.81 Aligned_cols=69 Identities=16% Similarity=0.250 Sum_probs=44.6
Q ss_pred ceeEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCcce
Q 027254 138 SSVLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQS 217 (226)
Q Consensus 138 s~v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~VqS 217 (226)
|++++..+|.. +..+.+.+. .++|..+.++.-. - | ++.+|+|.+ +.+++.+.+-.|+.+ ++|-|
T Consensus 8 sSlVV~~~Pe~----~~~V~~~l~--~ipg~Evh~~d~~-~--G----KiVVtiE~~--~~~~~~~~i~~I~~l-~GVls 71 (87)
T PRK10553 8 CSLVVQAKSER----ISDISTQLN--AFPGCEVAVSDAP-S--G----QLIVVVEAE--DSETLLQTIESVRNV-EGVLA 71 (87)
T ss_pred eEEEEEeChHH----HHHHHHHHH--cCCCcEEEeecCC-C--C----eEEEEEEeC--ChHHHHHHHHHHHcC-CCceE
Confidence 78899999975 555555555 4568877754211 0 1 356677775 445555554447888 89999
Q ss_pred eeeee
Q 027254 218 CDIVA 222 (226)
Q Consensus 218 ~di~~ 222 (226)
+.++-
T Consensus 72 a~lVY 76 (87)
T PRK10553 72 VSLVY 76 (87)
T ss_pred EEEEE
Confidence 98764
No 83
>TIGR03116 cas_csf3 CRISPR-associated protein, Csf3 family. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf3 (CRISPR/cas Subtype as in A. ferrooxidans protein 3), as it lies third closest to the repeats.
Probab=42.95 E-value=8.9 Score=33.45 Aligned_cols=41 Identities=20% Similarity=0.389 Sum_probs=28.2
Q ss_pred eecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeee
Q 027254 144 VKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKK 184 (226)
Q Consensus 144 vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikk 184 (226)
+-||.++-+|.+..-.-|.-.-++-+|.+|++++|+|+=+-
T Consensus 39 ~~p~g~~r~l~edlpl~k~e~~d~W~Wkas~l~v~~f~~~~ 79 (214)
T TIGR03116 39 ADPWGDARDLSEDLPLGKEEEGDSWVWKASRLEVLAFLPYP 79 (214)
T ss_pred cCcchhhhhhhcccCcccccCCCeEEEEecceeeeecCccc
Confidence 45777766665532223344567889999999999998654
No 84
>PRK04435 hypothetical protein; Provisional
Probab=35.01 E-value=42 Score=27.41 Aligned_cols=78 Identities=14% Similarity=0.206 Sum_probs=44.1
Q ss_pred eEEEeecCCCcccHHHHHHHHhhhccCCceEeeeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCcceee
Q 027254 140 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCD 219 (226)
Q Consensus 140 v~l~vkP~d~etdl~~l~~~vr~i~~~gl~wg~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~VqS~d 219 (226)
+.|.+.=.|..==|.++-..|..-..+=+..+ .-.|. =|.-.+.+++.+.|-....++|.++ +..+ ++|++|+
T Consensus 70 vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~--q~i~~-~g~a~vs~tVevs~~~~~L~~Li~~---L~~i-~gV~~V~ 142 (147)
T PRK04435 70 ITLSLLLEDRSGTLSKVLNVIAEAGGNILTIN--QSIPL-QGRANVTISIDTSSMEGDIDELLEK---LRNL-DGVEKVE 142 (147)
T ss_pred EEEEEEEecCCCHHHHHHHHHHHcCCCeEEEE--EEcCC-CCEEEEEEEEEeCChHHHHHHHHHH---HHcC-CCcEEEE
Confidence 45555444433336666666543332222222 12333 2455555666555544567788888 8888 9999999
Q ss_pred eeeec
Q 027254 220 IVAFN 224 (226)
Q Consensus 220 i~~~~ 224 (226)
|.+.+
T Consensus 143 i~~~~ 147 (147)
T PRK04435 143 LIGME 147 (147)
T ss_pred EEecC
Confidence 98753
No 85
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=30.12 E-value=87 Score=20.32 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=35.9
Q ss_pred cHHHHHHHHhhcCCCCeeecCCCCHHHHHHHchhccCCCCCCccHHHHHHHHHhhh
Q 027254 10 SATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALL 65 (226)
Q Consensus 10 s~~~L~~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p~~~yPnl~RWy~~I~s~p 65 (226)
+...+..|+.++..+.| ||..++.-++..... ..-.|..||.+-+...
T Consensus 8 ~~~~~~~Le~~f~~~~~-----P~~~~~~~la~~~~l---~~~qV~~WF~nrR~~~ 55 (59)
T cd00086 8 TPEQLEELEKEFEKNPY-----PSREEREELAKELGL---TERQVKIWFQNRRAKL 55 (59)
T ss_pred CHHHHHHHHHHHHhCCC-----CCHHHHHHHHHHHCc---CHHHHHHHHHHHHHHH
Confidence 46678888888877555 888888877766543 3568999999887654
No 86
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=26.26 E-value=73 Score=21.74 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=25.4
Q ss_pred eeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCcceeeee
Q 027254 181 GIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQSCDIV 221 (226)
Q Consensus 181 GikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~VqS~di~ 221 (226)
|...+.+.+.+.|-....+.|..+ +.++ ++|++|.+.
T Consensus 39 ~~~~i~~~v~v~~~~~~l~~l~~~---L~~i-~~V~~v~~~ 75 (76)
T cd04888 39 GRANVTISIDTSTMNGDIDELLEE---LREI-DGVEKVELV 75 (76)
T ss_pred CeEEEEEEEEcCchHHHHHHHHHH---HhcC-CCeEEEEEe
Confidence 544455555555544466777777 7888 899999875
No 87
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=23.23 E-value=1.6e+02 Score=21.34 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=28.3
Q ss_pred HHHhhcCCCCeeecCCCCHHHHHHHchhccCCCCCCccHHHHHHHHHhhh
Q 027254 16 KLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHIDALL 65 (226)
Q Consensus 16 ~Ln~~La~rsYl~G~~~SiADIavf~~L~~~p~~~yPnl~RWy~~I~s~p 65 (226)
.|++||-..+= -+++--..-|..+........|+|..||+.++..-
T Consensus 5 IL~~fLls~s~----L~~iisl~qF~~LFPr~~~~~P~ir~LYr~Lq~qR 50 (67)
T PF09447_consen 5 ILSNFLLSPSS----LPDIISLEQFRKLFPRRLRSHPQIRSLYRDLQAQR 50 (67)
T ss_pred HHHHHcCCcCc----cccccCHHHHHHHccccCCCChHHHHHHHHHHHHH
Confidence 56777643321 23444444555554434457899999999998754
No 88
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=21.22 E-value=88 Score=31.41 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=19.0
Q ss_pred ccCcccHHHHHHHHhhcCCCCeeecCCCC
Q 027254 5 FDNVNSATGLKKLDEYLLTRSYITGYQAS 33 (226)
Q Consensus 5 f~dl~s~~~L~~Ln~~La~rsYl~G~~~S 33 (226)
|.+|...+.|..|+.+|...==|.-..+|
T Consensus 185 ylnlEkFrvlSrlEgrl~~Ni~LeKenIs 213 (574)
T PF07462_consen 185 YLNLEKFRVLSRLEGRLGKNINLEKENIS 213 (574)
T ss_pred hhhHHHHHHHHHHHHHhccccccchhhhh
Confidence 45666778888999988776433333333
No 89
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=20.07 E-value=4.2e+02 Score=20.53 Aligned_cols=75 Identities=27% Similarity=0.419 Sum_probs=49.6
Q ss_pred eEEEe-ecCCCcccHHHHHHHHhhhccCCceEe-eeeeeeeeeeeeeEEEEEEEeCCCCChhHHHhhhhcccccCCCcce
Q 027254 140 VLLDV-KPWDDETDMKKLEEAVRSVQMEGLLWG-ASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEEHLLEEPINEYVQS 217 (226)
Q Consensus 140 v~l~v-kP~d~etdl~~l~~~vr~i~~~gl~wg-~~k~~pv~fGikkLqi~~vv~Dd~v~~d~l~e~~~~~~~~e~~VqS 217 (226)
++||| || -+.++-++...+-++. |. +| ...+..| -..-..+.++||-+...-|++++. |+.+..-|-|
T Consensus 7 lVLDVlKP--~~p~i~e~A~~l~~~~--gV-~gVnitv~Ev--D~ete~lkitiEG~~id~d~i~~~---Ie~~Gg~IHS 76 (95)
T PF02680_consen 7 LVLDVLKP--HEPSIVELAKALSELE--GV-DGVNITVVEV--DVETENLKITIEGDDIDFDEIKEA---IEELGGVIHS 76 (95)
T ss_dssp EEEEEEEE--SSS-HHHHHHHHHTST--TE-EEEEEEEEEE---SSEEEEEEEEEESSE-HHHHHHH---HHHTT-EEEE
T ss_pred EEEEeecC--CCCCHHHHHHHHHhCC--Cc-ceEEEEEEEe--eccccEEEEEEEeCCCCHHHHHHH---HHHcCCeEEe
Confidence 67776 67 7777888888877654 32 33 3344333 344556778889999999999999 7788777899
Q ss_pred eeeeeec
Q 027254 218 CDIVAFN 224 (226)
Q Consensus 218 ~di~~~~ 224 (226)
+|=+...
T Consensus 77 IDeVvaG 83 (95)
T PF02680_consen 77 IDEVVAG 83 (95)
T ss_dssp EEEEEEE
T ss_pred eeeeeec
Confidence 9866543
Done!