BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027255
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis
(Atglyr1)
Length = 310
Score = 239 bits (611), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 118/150 (78%), Positives = 130/150 (86%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
MEVGFLGLGIMGKA+SMNLL+NGFKVTVWNRTLSKCDELV HGA+V SPAEVIKKC T
Sbjct: 22 MEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYT 81
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML+DP AALSVVFDKGGVLEQIC GKGYIDMSTVD ETS+KI+ AIT KGG F+E PV
Sbjct: 82 IAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPV 141
Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMF 150
SGSK+PAE GQL+IL+AG+K L + P F
Sbjct: 142 SGSKKPAEDGQLIILAAGDKALFEESIPAF 171
Score = 119 bits (299), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 62/80 (77%)
Query: 141 DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXX 200
DLG + NPMFKGKGP+M +S+Y PAFPLKHQQKDMRLALALGDENAVSMP+
Sbjct: 227 DLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMPVAAAANEAFK 286
Query: 201 XXRSLGLGDNDFSAVFEVVK 220
RSLGLGD DFSAV E VK
Sbjct: 287 KARSLGLGDLDFSAVIEAVK 306
>pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
pdb|3PDU|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Sulfurreducens In Complex With Nadp+
Length = 287
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/156 (59%), Positives = 107/156 (68%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63
GFLGLGIMG ++ NL+R GF VTVWNR +KC LVA GA SPAEV C ITI M
Sbjct: 5 GFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAM 64
Query: 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123
LADPAAA V F GVLE I G+GYIDMSTVD ETS I A+T++GG FLEAPVSG+
Sbjct: 65 LADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGT 124
Query: 124 KQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQ 159
K+PAE G L+IL+AG++ L A P F G L
Sbjct: 125 KKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLH 160
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 46/80 (57%)
Query: 141 DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXX 200
D G +ANPMFKGKG +L + +FPLKH QKD+RLA+ LGD +
Sbjct: 207 DAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLHGAATANESFK 266
Query: 201 XXRSLGLGDNDFSAVFEVVK 220
R+ G D DF+AVF V++
Sbjct: 267 RARAAGHADEDFAAVFRVLE 286
>pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|B Chain B, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|C Chain C, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|D Chain D, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|E Chain E, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|F Chain F, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|G Chain G, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
pdb|3PEF|H Chain H, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase
From Geobacter Metallireducens In Complex With Nadp+
Length = 287
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/158 (53%), Positives = 111/158 (70%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+ GF+GLGIMG A++ NL++ G VT+WNR+ K +EL A GA +P EV++ C +T
Sbjct: 3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPXEVVESCPVTF 62
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
MLADPAAA V F K GVLE I G+GY+DMSTVD TS +I A+ +KGG FLEAPVS
Sbjct: 63 AMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVS 122
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQ 159
GSK+PAE G L+IL+AG+++L A P F+ G ++
Sbjct: 123 GSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIH 160
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 46/78 (58%)
Query: 143 GGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXX 202
G +ANPMF KG + N+APAFPLKH QKD+RLA+ALGD +
Sbjct: 209 GAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLVASAAANELFKGA 268
Query: 203 RSLGLGDNDFSAVFEVVK 220
R+ G GD DFSA+F+ +
Sbjct: 269 RAAGFGDEDFSAIFKTYE 286
>pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|B Chain B, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|C Chain C, Structure Of The Cytokine-Like Nuclear Factor N-Pac
pdb|2UYY|D Chain D, Structure Of The Cytokine-Like Nuclear Factor N-Pac
Length = 316
Score = 157 bits (398), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 77/155 (49%), Positives = 104/155 (67%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++GFLGLG+MG I NLL+ G VTVWNRT KCD + GA +G +PAEV+ C IT
Sbjct: 32 KIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITF 91
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
++DP AA +V GVL+ I PGK Y+DMSTVD +T ++++ I S+GG FLEAPVS
Sbjct: 92 ACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVS 151
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156
G++Q + G LVIL+AG++ L + F+ G T
Sbjct: 152 GNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKT 186
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 10/110 (9%)
Query: 113 GHFLEAPVSGSKQPAETGQ-----LVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFP 167
G F+ G TGQ L IL+ G+ +A+ K +LQ N+ P F
Sbjct: 208 GSFMATIAEGLTLAQVTGQSQQTLLDILNQGQ-----LASIFLDQKCQNILQGNFKPDFY 262
Query: 168 LKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVFE 217
LK+ QKD+RLA+ALGD P+ ++L DND SAV+
Sbjct: 263 LKYIQKDLRLAIALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYR 312
>pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
pdb|2I9P|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase Complexed With Nad+
Length = 319
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 23 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 82
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML A+ G+L+++ G ID ST+D S ++++ + G F++APV
Sbjct: 83 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 142
Query: 121 SGSKQPAETGQLVILSAGEKD 141
SG A +G L + G +D
Sbjct: 143 SGGVGAARSGNLTFMVGGVED 163
>pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|B Chain B, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|C Chain C, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
pdb|2GF2|D Chain D, Crystal Structure Of Human Hydroxyisobutyrate
Dehydrogenase
Length = 296
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
M VGF+GLG MG ++ NL+++G+ + +++ C E G V SPA+V +K
Sbjct: 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRI 60
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I ML A+ G+L+++ G ID ST+D S ++++ + G F++APV
Sbjct: 61 ITMLPTSINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPV 120
Query: 121 SGSKQPAETGQLVILSAGEKD 141
SG A +G L + G +D
Sbjct: 121 SGGVGAARSGNLTFMVGGVED 141
>pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde
Reductase [salmonella Typhimurium Lt2]
Length = 299
Score = 79.7 bits (195), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 74/139 (53%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VGF+GLGI GK S NLL+ G+ + V +R +++A GA + + ++C + I
Sbjct: 7 KVGFIGLGIXGKPXSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVII 66
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + V + G++E PG ID S++ S +IS A+ +KG L+APVS
Sbjct: 67 TXLPNSPHVKEVALGENGIIEGAKPGTVLIDXSSIAPLASREISDALKAKGVEXLDAPVS 126
Query: 122 GSKQPAETGQLVILSAGEK 140
G + A G L + G+K
Sbjct: 127 GGEPKAIDGTLSVXVGGDK 145
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 143 GGIA-NPMFKGKGPTMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXX 201
GG+A + + K P + N+ P F + KD+ AL +P+
Sbjct: 212 GGLAGSTVLDAKAPXVXDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVXEXXQA 271
Query: 202 XRSLGLGDNDFSAV 215
R+ G G++D SA+
Sbjct: 272 LRADGHGNDDHSAL 285
>pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|B Chain B, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|C Chain C, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
pdb|4GBJ|D Chain D, Crystal Structure Of Nad-Binding 6-Phosphogluconate
Dehydrogenase From Dyadobacter Fermentans
Length = 297
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ FLGLG +G I+ LL G+++ VWNRT SK + L GATV + + I I
Sbjct: 7 KIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVF 66
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
+LAD AA + + ++E++ ++ ST+ ETS ++++ G H++ AP+
Sbjct: 67 SVLADDAAVEELFSXE--LVEKLGKDGVHVSXSTISPETSRQLAQVHEWYGAHYVGAPI 123
>pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
pdb|1YB4|B Chain B, Crystal Structure Of The Tartronic Semialdehyde Reductase
From Salmonella Typhimurium Lt2
Length = 295
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 5/163 (3%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTIT 60
++GF+GLGI G ++NL R G ++ V T+ DEL++ GA + +V + I
Sbjct: 5 KLGFIGLGIXGSPXAINLARAGHQLHVT--TIGPVADELLSLGAVNVETARQVTEFADII 62
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
+ D V+F + G + GK +D S++ + + ++ + G +L+APV
Sbjct: 63 FIXVPDTPQVEDVLFGEHGCAKTSLQGKTIVDXSSISPIETKRFAQRVNEXGADYLDAPV 122
Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK--GKGPTMLQSN 161
SG + A G L I GE+ + P+F GK T++ N
Sbjct: 123 SGGEIGAREGTLSIXVGGEQKVFDRVKPLFDILGKNITLVGGN 165
>pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|B Chain B, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|C Chain C, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
pdb|3CKY|D Chain D, Structural And Kinetic Properties Of A Beta-Hydroxyacid
Dehydrogenase Involved In Nicotinate Fermentation
Length = 301
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++GF+GLG MGK +++NLL+ G V ++ + +VA GA + +V I
Sbjct: 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDII 64
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
L + +V+ GGVL G +DMS+V +++K+++ KG +++APV
Sbjct: 65 FTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPV 124
Query: 121 SGSKQPAETGQLVIL 135
SG + AE G L I+
Sbjct: 125 SGGTKGAEAGTLTIM 139
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%)
Query: 157 MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIXXXXXXXXXXXRSLGLGDNDFSAVF 216
++ ++A F + Q KD+ LAL G E V +P+ R++GLG D SAV
Sbjct: 227 IMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVI 286
Query: 217 EVVKDL 222
+V + +
Sbjct: 287 KVWEQM 292
>pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From
Pseudomonas Aeruginosa Pao1 In Complex With Nad
Length = 299
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ F+GLG G + NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 4 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 63
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + D G+L I PG ++ ST+ ++ KI A +G L+APVS
Sbjct: 64 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 123
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQS 160
G A G L G+ + A P+F+ G + +
Sbjct: 124 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHA 162
>pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate
Dehydrogenase From Pseudomonas Aeruginosa Pao1
Length = 300
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ F+GLG G + NLL+ G+ + V++ S D LVA GA+ S + ++ + I
Sbjct: 5 QIAFIGLGHXGAPXATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVI 64
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + D G+L I PG ++ ST+ ++ KI A +G L+APVS
Sbjct: 65 SXLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAXLDAPVS 124
Query: 122 GSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTMLQS 160
G A G L G+ + A P+F+ G + +
Sbjct: 125 GGTAGAAAGTLTFXVGGDAEALEKARPLFEAXGRNIFHA 163
>pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|B Chain B, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|C Chain C, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
pdb|1WP4|D Chain D, Structure Of Tt368 Protein From Thermus Thermophilus Hb8
Length = 289
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 68/148 (45%), Gaps = 21/148 (14%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
+V F+GLG MG ++ +L R F VWNRT K + H G + A V
Sbjct: 3 KVAFIGLGAMGYPMAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
I C T + + A AL +G ++D ++ + E S +++ + KG
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGTY---------WVDATSGEPEASRRLAERLREKGV 109
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKD 141
+L+APVSG AE G L ++ G ++
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVMLGGPEE 137
>pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
pdb|4DLL|B Chain B, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase
From Polaromonas Sp. Js666
Length = 320
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 65/138 (47%), Gaps = 1/138 (0%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++ FLG G G + L G+ + VWNRT ++ L A GAT+ + I +
Sbjct: 33 KITFLGTGSXGLPXARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVV 92
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121
L + A V+F + GV PG ++D +++ + + + + G L+ PVS
Sbjct: 93 SXLENGAVVQDVLFAQ-GVAAAXKPGSLFLDXASITPREARDHAARLGALGIAHLDTPVS 151
Query: 122 GSKQPAETGQLVILSAGE 139
G AE G LVI + G+
Sbjct: 152 GGTVGAEQGTLVIXAGGK 169
>pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|B Chain B, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|C Chain C, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
pdb|2CVZ|D Chain D, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus
Thermophilus Hb8
Length = 289
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------SPAEV 53
+V F+GLG G + +L R F VWNRT K + H G + A V
Sbjct: 3 KVAFIGLGAXGYPXAGHLARR-FPTLVWNRTFEKA---LRHQEEFGSEAVPLERVAEARV 58
Query: 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG 113
I C T + + A AL +G ++D ++ + E S +++ + KG
Sbjct: 59 IFTCLPTTREVYEVAEALYPYLREGTY---------WVDATSGEPEASRRLAERLREKGV 109
Query: 114 HFLEAPVSGSKQPAETGQLVILSAGEKD 141
+L+APVSG AE G L + G ++
Sbjct: 110 TYLDAPVSGGTSGAEAGTLTVXLGGPEE 137
>pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W8Z|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 470
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 76/162 (46%), Gaps = 19/162 (11%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATVGGSPAEVIKKCTI 59
++G +GL +MGK +++N+ G+ V V+NR K DE + A G + G+ +
Sbjct: 6 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYS-----IEE 60
Query: 60 TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
+ L P L +V K G +EQ+ P G ID + + + ++ +
Sbjct: 61 FVNALEKPRKILLMV--KAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 118
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG 152
G HF+ VSG ++ A G I+ G+K+ + P+F+
Sbjct: 119 LGIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFEA 159
>pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
pdb|2W90|B Chain B, Geobacillus Stearothermophilus 6-Phosphogluconate
Dehydrogenase With Bound 6-Phosphogluconate
Length = 471
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/161 (26%), Positives = 76/161 (47%), Gaps = 19/161 (11%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV--AHGATVGGSPAEVIKKCTI 59
++G +GL +MGK +++N+ G+ V V+NR K DE + A G + G+ +
Sbjct: 7 QIGVIGLAVMGKNLALNIESKGYSVAVYNRLREKTDEFLQEAKGKNIVGTYS-----IEE 61
Query: 60 TIGMLADPAAALSVVFDKGG-----VLEQICP----GKGYIDMSTVDHETSIKISRAITS 110
+ L P L +V K G +EQ+ P G ID + + + ++ +
Sbjct: 62 FVNALEKPRKILLMV--KAGAPTDATIEQLKPHLEKGDIVIDGGNTYFKDTQRRNKELAE 119
Query: 111 KGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
G HF+ VSG ++ A G I+ G+K+ + P+F+
Sbjct: 120 LGIHFIGTGVSGGEEGALKGP-SIMPGGQKEAHELVRPIFE 159
>pdb|3FWN|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
pdb|3FWN|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate And
2'-Monophosphoadenosine-5'-Diphosphate
Length = 480
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A P +K+ +
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF---V 73
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGGH 114
L P L +V G I K Y+D + + +I+ +R ++++G +
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 115 FLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMF 150
F+ VSG ++ A G I+ G+K+ + P+
Sbjct: 134 FIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL 168
>pdb|2ZYA|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYA|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With 6-
Phosphogluconate
pdb|2ZYD|A Chain A, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
pdb|2ZYD|B Chain B, Dimeric 6-Phosphogluconate Dehydrogenase Complexed With
Glucose
Length = 480
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 77/156 (49%), Gaps = 11/156 (7%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++G +G+ +MG+ +++N+ G+ V+++NR+ K +E++A P +K+ +
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEF---V 73
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGGH 114
L P L +V G I K Y+D + + +I+ +R ++++G +
Sbjct: 74 ESLETPRRILLMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 115 FLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMF 150
F+ VSG ++ A G I+ G+K+ + P+
Sbjct: 134 FIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPIL 168
>pdb|2ZYG|A Chain A, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
pdb|2ZYG|B Chain B, Apo-Form Of Dimeric 6-Phosphogluconate Dehydrogenase
Length = 480
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 77/157 (49%), Gaps = 11/157 (7%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
++G +G+ +MG+ +++N+ G+ V+V+NR+ K +E++A P +++ +
Sbjct: 17 QIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIAENPGKKLVPYYTVQEF---V 73
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-------DHETSIKISRAITSKGGH 114
L P L +V G I K Y+D + + +I+ +R ++++G +
Sbjct: 74 ESLETPRRILLMVKAGAGTDSAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN 133
Query: 115 FLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
F+ VSG ++ G I+ G+K+ + P+ K
Sbjct: 134 FIGTGVSGGEEGTLKGP-SIMPGGQKEAYELVAPILK 169
>pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
pdb|3QHA|B Chain B, Crystal Structure Of A Putative Oxidoreductase From
Mycobacterium Avium 104
Length = 296
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 4/151 (2%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+++G++GLG MG ++ + VTV++ + L GAT+ S A+V I
Sbjct: 16 LKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIH 75
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I +L D A VV + G PG ST+ T+++++R + ++ H ++APV
Sbjct: 76 ITVL-DDAQVREVVGELAG---HAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPV 131
Query: 121 SGSKQPAETGQLVILSAGEKDLGGIANPMFK 151
SG A G+L + ++++ P FK
Sbjct: 132 SGGAAAAARGELATMVGADREVYERIKPAFK 162
>pdb|2JKV|A Chain A, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|B Chain B, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|C Chain C, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|D Chain D, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|E Chain E, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
pdb|2JKV|F Chain F, Structure Of Human Phosphogluconate Dehydrogenase In
Complex With Nadph At 2.53a
Length = 505
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 27 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 69
>pdb|4GWG|A Chain A, Crystal Structure Analysis Of 6-Phosphogluconate
Dehydrogenase Apo- Form
pdb|4GWK|A Chain A, Crystal Structure Of 6-Phosphogluconate Dehydrogenase
Complexed With 3-Phosphoglyceric Acid
Length = 484
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 6 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 48
>pdb|2P4Q|A Chain A, Crystal Structure Analysis Of Gnd1 In Saccharomyces
Cerevisiae
Length = 497
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
+ G +GL +MG+ + +N +GF V +NRT SK D +A+ A
Sbjct: 12 DFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEA 54
>pdb|1PGN|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGO|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGP|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|1PGQ|A Chain A, Crystallographic Study Of Coenzyme, Coenzyme Analogue
And Substrate Binding In 6-Phosphogluconate
Dehydrogenase: Implications For Nadp Specificity And
The Enzyme Mechanism
pdb|2PGD|A Chain A, The Structure Of 6-Phosphogluconate Dehydrogenase
Refined At 2 Angstroms Resolution
Length = 482
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44
++ +GL +MG+ + +N+ +GF V +NRT+SK D+ +A+ A
Sbjct: 4 DIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA 46
>pdb|2IZ0|A Chain A, Pex Inhibitor-Home Data
pdb|2IZ0|B Chain B, Pex Inhibitor-Home Data
pdb|2IZ0|C Chain C, Pex Inhibitor-Home Data
pdb|2IZ1|A Chain A, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|B Chain B, 6pdh Complexed With Pex Inhibitor Synchrotron Data
pdb|2IZ1|C Chain C, 6pdh Complexed With Pex Inhibitor Synchrotron Data
Length = 474
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39
G +G+ +MGK +++N+ G+ V ++NRT SK +E+
Sbjct: 9 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEV 44
>pdb|2IYP|A Chain A, Product Rup
pdb|2IYP|B Chain B, Product Rup
pdb|2IYP|C Chain C, Product Rup
Length = 473
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39
G +G+ +MGK +++N+ G+ V ++NRT SK +E+
Sbjct: 8 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEV 43
>pdb|2IYO|A Chain A, Structural Characterization Of A Bacterial 6pdh Reveals
Aspects Of Specificity, Mechanism And Mode Of
Inhibition
Length = 472
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 26/36 (72%)
Query: 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39
G +G+ +MGK +++N+ G+ V ++NRT SK +E+
Sbjct: 7 GVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEV 42
>pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase
(Ygbj) From Salmonella Typhimurium
Length = 303
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 5/124 (4%)
Query: 20 LRNGFKVTVWNRTLS--KCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFD 76
LR G + W L+ C L+A GA S E + ++ + A V+F
Sbjct: 27 LRAGL--STWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFG 84
Query: 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136
+ GV PG ST+ + +I+ A+T+ + L+APVSG A G+ + +
Sbjct: 85 EDGVAHLXKPGSAVXVSSTISSADAQEIAAALTALNLNXLDAPVSGGAVKAAQGEXTVXA 144
Query: 137 AGEK 140
+G +
Sbjct: 145 SGSE 148
>pdb|3L6D|A Chain A, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
pdb|3L6D|B Chain B, Crystal Structure Of Putative Oxidoreductase From
Pseudomonas Putida Kt2440
Length = 306
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+V +GLG G + LL+ G +V +WNR+ K LVA GA + S + T
Sbjct: 10 FDVSVIGLGAXGTIXAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPAT 69
Query: 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120
I +L D A V+ G + + + +D +T + + + + GGH+++ +
Sbjct: 70 IFVLLDNHATHEVLGXPG--VARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGXI 127
>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK7|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Mercury At 2.5 Angstrom
Resolution
pdb|2HK8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|E Chain E, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|F Chain F, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|G Chain G, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
pdb|2HK8|H Chain H, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus At 2.35 Angstrom Resolution
Length = 269
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIG 62
LG G +A+ L++ G KV +WNRT K +L V SP EVI K + +
Sbjct: 129 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVN 186
>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|B Chain B, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|C Chain C, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
pdb|2HK9|D Chain D, Crystal Structure Of Shikimate Dehydrogenase From Aquifex
Aeolicus In Complex With Shikimate And Nadp+ At 2.2
Angstrom Resolution
Length = 275
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 6 LGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA-TVGGSPAEVIKKCTITIG 62
LG G +A+ L++ G KV +WNRT K +L V SP EVI K + +
Sbjct: 135 LGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVN 192
>pdb|1I36|A Chain A, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
pdb|1I36|B Chain B, Structure Of Conserved Protein Mth1747 Of Unknown Function
Reveals Structural Similarity With 3-Hydroxyacid
Dehydrogenases
Length = 264
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 60/125 (48%), Gaps = 12/125 (9%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKV--TVWNRTLSKCDELVAHGATVGGSPAEVIKKCT 58
+ VGF+G G + + ++ L G +V ++ R+ S + G T + E + C
Sbjct: 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCP 58
Query: 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118
+ I + P AL G + I Y+D++ + ET ++++ ++ KGG F++A
Sbjct: 59 VVISAVT-PGVALGAARRAGRHVRGI-----YVDINNISPET-VRMASSLIEKGG-FVDA 110
Query: 119 PVSGS 123
+ GS
Sbjct: 111 AIMGS 115
>pdb|1PGJ|A Chain A, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
pdb|1PGJ|B Chain B, X-Ray Structure Of 6-Phosphogluconate Dehydrogenase From
The Protozoan Parasite T. Brucei
Length = 478
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 15 ISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45
+++N+ GFKV V+NRT SK +E + A+
Sbjct: 16 LALNIAEKGFKVAVFNRTYSKSEEFMKANAS 46
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTIT 60
+G LGLG +G+A++ G V WNR TLS D +AH SP ++ + +
Sbjct: 173 RIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVD-WIAH-----QSPVDLARDSDVL 226
Query: 61 IGMLADPAAALSVV 74
+A AA ++V
Sbjct: 227 AVCVAASAATQNIV 240
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNR 31
VG LG+G +GKAI+ L+ G K+ W+R
Sbjct: 149 VGILGMGAIGKAIARRLIPFGVKLYYWSR 177
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 32.0 bits (71), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43
+ LG G G A+++ L R G KV +W+ DE+ A G
Sbjct: 32 IAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEG 72
>pdb|2F1K|A Chain A, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|B Chain B, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|C Chain C, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
pdb|2F1K|D Chain D, Crystal Structure Of Synechocystis Arogenate
Dehydrogenase
Length = 279
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40
M++G +GLG++G +++ +L R G + +R S C++ V
Sbjct: 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV 40
>pdb|1TXG|A Chain A, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
pdb|1TXG|B Chain B, Structure Of Glycerol-3-Phosphate Dehydrogenase From
Archaeoglobus Fulgidus
Length = 335
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW 29
M V LG G MG A+S+ L+ NG +V +W
Sbjct: 1 MIVSILGAGAMGSALSVPLVDNGNEVRIW 29
>pdb|2VNS|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VNS|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|A Chain A, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
pdb|2VQ3|B Chain B, Crystal Structure Of The Membrane Proximal Oxidoreductase
Domain Of Human Steap3, The Dominant Ferric Reductase Of
The Erythroid Transferrin Cycle
Length = 215
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 44/102 (43%), Gaps = 7/102 (6%)
Query: 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITI 61
+VG LG G ++++ L+ +GFKV V +R + L A V V I +
Sbjct: 30 KVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFV 89
Query: 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIK 103
+ + ++L + D+ GK +D+S + ++
Sbjct: 90 AVFREHYSSLCSLSDQLA-------GKILVDVSNPTEQEHLQ 124
>pdb|2E28|A Chain A, Crystal Structure Analysis Of Pyruvate Kinase From
Bacillus Stearothermophilus
Length = 587
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
Query: 130 GQLVILSAGEKDLGGIANPMFKGKGPTMLQSNYAPAFPL----KHQQKDMRLALALG 182
GQ V +A D+ I P GK P M+ + Y P P+ ++ RLAL G
Sbjct: 362 GQSVAHTALNLDVAAIVTPTVSGKTPQMV-AKYRPKAPIIAVTSNEAVSRRLALVWG 417
>pdb|1V6B|A Chain A, Solution Structure Of The Third Pdz Domain Of Mouse
Harmonin
Length = 118
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 42 HGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG----VLEQICPGKGYIDMST 95
HG V G I +T LA+ AAL +++GG ++ +CP K Y D T
Sbjct: 59 HGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGDWIDLVVAVCPPKEYDDELT 116
>pdb|2X58|A Chain A, The Crystal Structure Of Mfe1 Liganded With Coa
pdb|2X58|B Chain B, The Crystal Structure Of Mfe1 Liganded With Coa
Length = 727
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVT 27
VG LGLG MG+ I+++ R G V
Sbjct: 304 VGVLGLGTMGRGIAISFARVGISVV 328
>pdb|3ZWB|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
pdb|3ZWB|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
2trans-hexenoyl-coa
Length = 742
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVT 27
VG LGLG MG+ I+++ R G V
Sbjct: 319 VGVLGLGTMGRGIAISFARVGISVV 343
>pdb|3ZW8|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW8|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) In Apo Form
pdb|3ZW9|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZW9|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
(2s,3s)-3-hydroxy-2- Methylbutanoyl-coa
pdb|3ZWA|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWA|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-hexanoyl-coa
pdb|3ZWC|A Chain A, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
pdb|3ZWC|B Chain B, Crystal Structure Of Rat Peroxisomal Multifunctional
Enzyme Type 1 (rpmfe1) Complexed With
3s-hydroxy-decanoyl-coa
Length = 742
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKVT 27
VG LGLG MG+ I+++ R G V
Sbjct: 319 VGVLGLGTMGRGIAISFARVGISVV 343
>pdb|2DC1|A Chain A, Crystal Structure Of L-Aspartate Dehydrogenase From
Hyperthermophilic Archaeon Archaeoglobus Fulgidus
pdb|2DC1|B Chain B, Crystal Structure Of L-Aspartate Dehydrogenase From
Hyperthermophilic Archaeon Archaeoglobus Fulgidus
Length = 236
Score = 27.3 bits (59), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1 MEVGFLGLGIMGKAISMNLLRNGFKV 26
M VG +G G +GK ++ L RNGF++
Sbjct: 1 MLVGLIGYGAIGKFLAEWLERNGFEI 26
>pdb|1ZCJ|A Chain A, Crystal Structure Of 3-Hydroxyacyl-Coa Dehydrogenase
Length = 463
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 3 VGFLGLGIMGKAISMNLLRNGFKV 26
VG LGLG MG+ I+++ R G V
Sbjct: 40 VGVLGLGTMGRGIAISFARVGISV 63
>pdb|2ZPA|A Chain A, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
pdb|2ZPA|B Chain B, Crystal Structure Of Trna(Met) Cytidine Acetyltransferase
Length = 671
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 97 DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGG 144
D ET +K+ + ++ G H+ +P+ + GQ + +AGE ++ G
Sbjct: 362 DPETPLKVYQLLS--GAHYRTSPLDLRRXXDAPGQHFLQAAGENEIAG 407
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 99 ETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLV-ILSAGEKDLGGIANPMFKGKGPTM 157
T + A ++ G+ A + P+ TG LV +LSA G F+G+G ++
Sbjct: 48 RTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSL 107
Query: 158 LQSNYAP 164
+ +AP
Sbjct: 108 MGQAFAP 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,258,743
Number of Sequences: 62578
Number of extensions: 238982
Number of successful extensions: 580
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 512
Number of HSP's gapped (non-prelim): 65
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)