Query 027255
Match_columns 226
No_of_seqs 287 out of 2311
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 07:13:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027255.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027255hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2084 MmsB 3-hydroxyisobutyr 100.0 1.6E-55 3.5E-60 365.0 23.9 220 1-220 1-286 (286)
2 KOG0409 Predicted dehydrogenas 100.0 2.3E-53 5.1E-58 346.8 23.2 225 1-225 36-326 (327)
3 PRK15059 tartronate semialdehy 100.0 6.5E-47 1.4E-51 319.3 25.5 222 1-223 1-287 (292)
4 PRK15461 NADH-dependent gamma- 100.0 5E-45 1.1E-49 308.8 25.8 222 1-222 2-289 (296)
5 PLN02858 fructose-bisphosphate 100.0 5.3E-44 1.2E-48 348.9 24.0 222 1-222 5-294 (1378)
6 TIGR01692 HIBADH 3-hydroxyisob 100.0 2.5E-43 5.5E-48 297.4 23.6 216 5-220 1-288 (288)
7 TIGR01505 tartro_sem_red 2-hyd 100.0 1.1E-41 2.4E-46 287.9 25.1 221 2-222 1-286 (291)
8 PRK11559 garR tartronate semia 100.0 1.7E-41 3.7E-46 287.3 24.9 222 1-222 3-289 (296)
9 PLN02858 fructose-bisphosphate 100.0 2.7E-41 5.9E-46 330.0 24.1 222 1-222 325-614 (1378)
10 PLN02350 phosphogluconate dehy 100.0 5.9E-37 1.3E-41 272.7 19.3 201 1-205 7-300 (493)
11 PRK12490 6-phosphogluconate de 100.0 7.1E-37 1.5E-41 259.4 18.0 215 1-221 1-293 (299)
12 PF03446 NAD_binding_2: NAD bi 100.0 4.9E-36 1.1E-40 233.1 13.3 151 1-152 2-152 (163)
13 PRK09599 6-phosphogluconate de 100.0 5.7E-34 1.2E-38 241.9 17.9 215 1-222 1-295 (301)
14 TIGR00872 gnd_rel 6-phosphoglu 100.0 3.3E-30 7.1E-35 218.5 16.4 192 1-197 1-267 (298)
15 PTZ00142 6-phosphogluconate de 100.0 1.6E-29 3.5E-34 224.7 16.8 152 1-156 2-162 (470)
16 TIGR00873 gnd 6-phosphoglucona 100.0 2.3E-28 5E-33 217.4 14.9 152 2-157 1-160 (467)
17 PRK09287 6-phosphogluconate de 99.9 8.9E-27 1.9E-31 206.5 16.7 143 11-157 1-151 (459)
18 TIGR03026 NDP-sugDHase nucleot 99.9 1.9E-26 4.1E-31 203.6 13.7 199 1-202 1-296 (411)
19 PRK14618 NAD(P)H-dependent gly 99.9 1.7E-25 3.6E-30 192.2 15.2 206 1-221 5-322 (328)
20 COG1023 Gnd Predicted 6-phosph 99.9 5E-25 1.1E-29 175.2 14.5 204 1-221 1-211 (300)
21 PRK00094 gpsA NAD(P)H-dependen 99.9 2.6E-23 5.6E-28 178.1 14.4 136 1-140 2-157 (325)
22 PRK14619 NAD(P)H-dependent gly 99.9 1.6E-23 3.5E-28 178.4 12.7 194 1-221 5-300 (308)
23 PRK15182 Vi polysaccharide bio 99.9 1.7E-22 3.7E-27 178.4 13.0 198 1-200 7-291 (425)
24 PRK06129 3-hydroxyacyl-CoA deh 99.9 1.2E-21 2.5E-26 167.0 15.8 208 1-218 3-295 (308)
25 COG0240 GpsA Glycerol-3-phosph 99.8 5.3E-20 1.2E-24 154.7 15.7 136 1-140 2-156 (329)
26 PRK15057 UDP-glucose 6-dehydro 99.8 5.1E-20 1.1E-24 161.0 15.0 128 1-140 1-164 (388)
27 PRK11064 wecC UDP-N-acetyl-D-m 99.8 7.5E-20 1.6E-24 161.5 15.6 137 1-140 4-182 (415)
28 COG0362 Gnd 6-phosphogluconate 99.8 2E-20 4.3E-25 158.5 10.2 205 2-221 5-224 (473)
29 PRK07679 pyrroline-5-carboxyla 99.8 1.8E-18 3.9E-23 145.4 10.6 127 1-140 4-140 (279)
30 PLN02688 pyrroline-5-carboxyla 99.8 1.8E-17 3.9E-22 138.3 13.4 180 1-192 1-197 (266)
31 PRK09260 3-hydroxybutyryl-CoA 99.7 1.1E-17 2.4E-22 141.3 11.2 130 1-140 2-157 (288)
32 PRK07531 bifunctional 3-hydrox 99.7 1.6E-17 3.4E-22 149.9 12.6 182 1-190 5-211 (495)
33 TIGR01724 hmd_rel H2-forming N 99.7 3E-17 6.5E-22 137.2 13.2 104 1-107 1-129 (341)
34 PRK08507 prephenate dehydrogen 99.7 7.3E-17 1.6E-21 135.4 15.3 131 1-140 1-143 (275)
35 PRK08229 2-dehydropantoate 2-r 99.7 5.2E-17 1.1E-21 140.2 13.1 109 1-118 3-128 (341)
36 PTZ00345 glycerol-3-phosphate 99.7 1.7E-16 3.7E-21 137.3 15.7 136 1-140 12-181 (365)
37 PRK08655 prephenate dehydrogen 99.7 1.8E-16 3.8E-21 140.9 14.1 134 1-139 1-137 (437)
38 PRK07417 arogenate dehydrogena 99.7 4.8E-17 1E-21 136.8 9.9 127 1-135 1-130 (279)
39 KOG2653 6-phosphogluconate deh 99.7 2.5E-17 5.4E-22 137.9 7.9 206 1-221 7-228 (487)
40 PRK08268 3-hydroxy-acyl-CoA de 99.7 1.7E-16 3.6E-21 143.3 12.6 124 2-140 9-162 (507)
41 PF01210 NAD_Gly3P_dh_N: NAD-d 99.7 6.8E-17 1.5E-21 124.7 8.7 134 2-139 1-153 (157)
42 PRK12557 H(2)-dependent methyl 99.7 3.4E-16 7.3E-21 134.7 13.2 132 1-139 1-163 (342)
43 TIGR03376 glycerol3P_DH glycer 99.7 4E-16 8.7E-21 134.1 13.6 134 2-139 1-167 (342)
44 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.7 3.8E-16 8.3E-21 140.7 11.8 125 1-140 6-160 (503)
45 PRK06476 pyrroline-5-carboxyla 99.7 6.7E-15 1.4E-19 122.4 17.5 204 1-219 1-219 (258)
46 PRK12439 NAD(P)H-dependent gly 99.7 3.5E-15 7.5E-20 128.9 15.2 134 1-139 8-161 (341)
47 PF03721 UDPG_MGDP_dh_N: UDP-g 99.6 9.1E-16 2E-20 121.3 10.0 118 1-121 1-153 (185)
48 COG1004 Ugd Predicted UDP-gluc 99.6 2.9E-15 6.3E-20 128.1 13.7 196 1-199 1-291 (414)
49 PRK14620 NAD(P)H-dependent gly 99.6 9.2E-15 2E-19 125.5 15.0 135 1-139 1-156 (326)
50 PF03807 F420_oxidored: NADP o 99.6 1.6E-15 3.4E-20 107.3 7.7 89 2-95 1-95 (96)
51 PRK07819 3-hydroxybutyryl-CoA 99.6 1.8E-15 3.9E-20 127.6 9.4 120 2-124 7-154 (286)
52 PRK07502 cyclohexadienyl dehyd 99.6 5.4E-15 1.2E-19 126.0 12.3 119 1-124 7-130 (307)
53 PRK07680 late competence prote 99.6 4.3E-15 9.3E-20 124.6 11.5 127 1-137 1-133 (273)
54 PLN02545 3-hydroxybutyryl-CoA 99.6 2.9E-15 6.4E-20 126.9 10.2 130 1-140 5-159 (295)
55 PLN02353 probable UDP-glucose 99.6 2.8E-14 6.1E-19 127.5 16.5 120 1-123 2-160 (473)
56 PRK11199 tyrA bifunctional cho 99.6 7.6E-15 1.6E-19 128.1 12.2 119 1-140 99-219 (374)
57 PRK07530 3-hydroxybutyryl-CoA 99.6 8.3E-15 1.8E-19 123.9 10.1 115 1-121 5-149 (292)
58 PRK06545 prephenate dehydrogen 99.6 3.7E-14 8.1E-19 123.3 14.2 134 1-139 1-148 (359)
59 PRK12491 pyrroline-5-carboxyla 99.6 1.6E-14 3.4E-19 121.0 11.3 98 1-102 3-106 (272)
60 COG0287 TyrA Prephenate dehydr 99.6 6.6E-14 1.4E-18 117.1 14.5 135 1-140 4-146 (279)
61 PLN02712 arogenate dehydrogena 99.6 3.3E-14 7.2E-19 132.0 13.4 120 1-126 370-492 (667)
62 COG0677 WecC UDP-N-acetyl-D-ma 99.6 2E-14 4.3E-19 122.7 10.4 107 1-111 10-145 (436)
63 PLN02256 arogenate dehydrogena 99.6 6.1E-14 1.3E-18 119.1 12.9 120 1-126 37-159 (304)
64 PRK07574 formate dehydrogenase 99.5 7.7E-14 1.7E-18 121.6 12.7 112 1-114 193-304 (385)
65 PLN03139 formate dehydrogenase 99.5 1.3E-13 2.8E-18 120.1 13.0 113 1-115 200-312 (386)
66 PLN02712 arogenate dehydrogena 99.5 2.2E-13 4.8E-18 126.5 13.9 119 1-125 53-174 (667)
67 cd01065 NAD_bind_Shikimate_DH 99.5 4E-14 8.6E-19 108.6 7.4 112 1-118 20-138 (155)
68 PF14833 NAD_binding_11: NAD-b 99.5 2.9E-14 6.3E-19 105.4 6.2 78 142-219 44-122 (122)
69 PF10727 Rossmann-like: Rossma 99.5 1.7E-14 3.6E-19 106.9 4.8 108 1-115 11-122 (127)
70 PRK11880 pyrroline-5-carboxyla 99.5 8.7E-13 1.9E-17 110.1 15.3 127 1-137 3-133 (267)
71 PRK07066 3-hydroxybutyryl-CoA 99.5 7.5E-14 1.6E-18 119.0 9.0 105 1-109 8-132 (321)
72 PRK12480 D-lactate dehydrogena 99.5 2.6E-13 5.5E-18 116.6 11.7 109 1-115 147-255 (330)
73 PRK08293 3-hydroxybutyryl-CoA 99.5 9.9E-14 2.1E-18 117.1 8.5 97 1-99 4-126 (287)
74 PRK12921 2-dehydropantoate 2-r 99.5 8.2E-13 1.8E-17 112.2 13.4 116 1-122 1-133 (305)
75 PRK13243 glyoxylate reductase; 99.5 3.7E-13 8.1E-18 115.8 11.3 110 1-114 151-260 (333)
76 PRK06436 glycerate dehydrogena 99.5 3.4E-13 7.4E-18 114.3 10.5 106 1-114 123-229 (303)
77 PRK06130 3-hydroxybutyryl-CoA 99.5 4.6E-13 1E-17 114.2 11.3 128 1-140 5-155 (311)
78 PRK14806 bifunctional cyclohex 99.5 7.4E-13 1.6E-17 125.1 12.7 121 1-125 4-129 (735)
79 PRK08605 D-lactate dehydrogena 99.4 7.9E-13 1.7E-17 113.7 10.8 109 1-114 147-256 (332)
80 PRK06035 3-hydroxyacyl-CoA deh 99.4 3.8E-13 8.3E-18 113.7 8.5 117 2-123 5-153 (291)
81 PRK13403 ketol-acid reductoiso 99.4 7.7E-13 1.7E-17 111.6 9.9 90 1-94 17-106 (335)
82 TIGR01915 npdG NADPH-dependent 99.4 9.5E-13 2.1E-17 106.9 9.7 91 1-96 1-103 (219)
83 PF02826 2-Hacid_dh_C: D-isome 99.4 6.7E-13 1.5E-17 104.5 8.3 111 1-114 37-147 (178)
84 PRK06522 2-dehydropantoate 2-r 99.4 4.1E-12 8.9E-17 107.7 13.7 91 1-96 1-102 (304)
85 PRK15469 ghrA bifunctional gly 99.4 1.1E-12 2.4E-17 111.8 9.7 110 1-114 137-246 (312)
86 COG2085 Predicted dinucleotide 99.4 1.8E-12 3.9E-17 102.7 10.1 91 1-96 2-95 (211)
87 PRK07634 pyrroline-5-carboxyla 99.4 6.8E-12 1.5E-16 103.4 13.7 208 1-219 5-230 (245)
88 TIGR01327 PGDH D-3-phosphoglyc 99.4 3.7E-12 7.9E-17 115.8 10.6 111 1-114 139-249 (525)
89 COG0345 ProC Pyrroline-5-carbo 99.4 7.8E-12 1.7E-16 103.5 11.6 91 1-96 2-97 (266)
90 PRK08818 prephenate dehydrogen 99.4 1.2E-11 2.5E-16 107.4 12.9 120 1-139 5-131 (370)
91 PRK05808 3-hydroxybutyryl-CoA 99.4 5E-12 1.1E-16 106.5 10.1 102 2-108 5-130 (282)
92 PRK13302 putative L-aspartate 99.4 9.8E-12 2.1E-16 104.1 11.7 116 1-123 7-128 (271)
93 PRK13581 D-3-phosphoglycerate 99.3 6.1E-12 1.3E-16 114.4 10.5 113 1-117 141-255 (526)
94 PRK06928 pyrroline-5-carboxyla 99.3 1.4E-11 3.1E-16 103.5 11.1 92 1-96 2-100 (277)
95 PRK05479 ketol-acid reductoiso 99.3 1.1E-11 2.5E-16 105.7 10.5 95 1-99 18-113 (330)
96 PLN02928 oxidoreductase family 99.3 1.8E-11 4E-16 105.8 10.5 111 1-114 160-282 (347)
97 PTZ00431 pyrroline carboxylate 99.3 1.7E-11 3.8E-16 102.1 9.8 94 1-104 4-101 (260)
98 PRK13304 L-aspartate dehydroge 99.3 3.4E-11 7.4E-16 100.5 11.4 111 1-118 2-120 (265)
99 PRK00257 erythronate-4-phospha 99.3 1.7E-11 3.8E-16 106.8 9.7 111 1-118 117-233 (381)
100 COG0111 SerA Phosphoglycerate 99.3 2.5E-11 5.4E-16 103.8 10.2 111 1-114 143-253 (324)
101 TIGR00465 ilvC ketol-acid redu 99.3 4.3E-11 9.3E-16 102.0 10.9 94 1-98 4-98 (314)
102 PF02737 3HCDH_N: 3-hydroxyacy 99.3 2.6E-11 5.7E-16 95.6 8.7 93 2-97 1-117 (180)
103 COG1052 LdhA Lactate dehydroge 99.2 7.9E-11 1.7E-15 100.6 11.2 110 1-114 147-256 (324)
104 PRK06141 ornithine cyclodeamin 99.2 1.7E-11 3.7E-16 104.8 7.1 108 2-118 127-242 (314)
105 PRK11790 D-3-phosphoglycerate 99.2 5.9E-11 1.3E-15 104.7 10.5 108 1-114 152-259 (409)
106 TIGR02853 spore_dpaA dipicolin 99.2 7.2E-11 1.6E-15 99.6 10.3 109 1-119 152-262 (287)
107 PRK15409 bifunctional glyoxyla 99.2 1.2E-10 2.5E-15 99.9 11.0 110 1-114 146-256 (323)
108 PF07991 IlvN: Acetohydroxy ac 99.2 6.3E-11 1.4E-15 90.3 8.1 91 1-95 5-96 (165)
109 PRK14194 bifunctional 5,10-met 99.2 9.1E-11 2E-15 98.6 8.5 74 1-97 160-234 (301)
110 PF01408 GFO_IDH_MocA: Oxidore 99.2 4.6E-10 9.9E-15 82.2 11.2 108 1-115 1-116 (120)
111 PRK15438 erythronate-4-phospha 99.2 1.5E-10 3.3E-15 100.7 9.8 111 1-118 117-233 (378)
112 PRK08410 2-hydroxyacid dehydro 99.2 1.4E-10 3.1E-15 98.9 9.2 107 1-114 146-252 (311)
113 cd01075 NAD_bind_Leu_Phe_Val_D 99.2 2.5E-10 5.4E-15 91.4 9.9 157 1-193 29-190 (200)
114 PRK08269 3-hydroxybutyryl-CoA 99.1 1.5E-10 3.3E-15 98.9 7.7 105 11-119 1-142 (314)
115 PRK06932 glycerate dehydrogena 99.1 4.4E-10 9.6E-15 96.0 10.1 106 1-114 148-253 (314)
116 PRK06487 glycerate dehydrogena 99.1 4.6E-10 9.9E-15 96.0 10.1 105 1-114 149-253 (317)
117 PLN02306 hydroxypyruvate reduc 99.1 9E-10 1.9E-14 96.4 11.2 112 1-114 166-292 (386)
118 PF02153 PDH: Prephenate dehyd 99.1 1.1E-09 2.4E-14 91.2 11.0 120 15-139 1-132 (258)
119 TIGR00507 aroE shikimate 5-deh 99.1 4E-10 8.7E-15 94.4 7.9 112 1-118 118-236 (270)
120 PRK06249 2-dehydropantoate 2-r 99.1 1.4E-09 3.1E-14 92.9 11.3 101 1-109 6-120 (313)
121 PRK08306 dipicolinate synthase 99.1 1.1E-09 2.4E-14 92.8 9.9 108 1-118 153-262 (296)
122 PRK14188 bifunctional 5,10-met 99.0 1E-09 2.2E-14 92.5 8.9 73 1-97 159-233 (296)
123 KOG2380 Prephenate dehydrogena 99.0 2.4E-09 5.3E-14 90.1 10.8 119 2-127 54-176 (480)
124 KOG0069 Glyoxylate/hydroxypyru 99.0 1.7E-09 3.6E-14 92.0 9.8 108 1-111 163-270 (336)
125 COG1250 FadB 3-hydroxyacyl-CoA 99.0 1.5E-09 3.2E-14 91.7 8.4 96 1-99 4-124 (307)
126 COG1893 ApbA Ketopantoate redu 98.9 1.1E-08 2.3E-13 87.2 10.7 105 1-111 1-117 (307)
127 PRK05708 2-dehydropantoate 2-r 98.9 6.9E-08 1.5E-12 82.3 15.5 92 1-96 3-106 (305)
128 PRK11730 fadB multifunctional 98.9 8.6E-09 1.9E-13 97.1 9.3 92 2-96 315-430 (715)
129 COG1748 LYS9 Saccharopine dehy 98.9 1.7E-08 3.6E-13 87.9 10.2 117 1-125 2-130 (389)
130 PRK14179 bifunctional 5,10-met 98.9 8.7E-09 1.9E-13 86.1 7.8 74 1-97 159-233 (284)
131 TIGR02371 ala_DH_arch alanine 98.9 7.2E-09 1.6E-13 89.0 7.5 108 2-118 130-245 (325)
132 TIGR02437 FadB fatty oxidation 98.8 1.3E-08 2.7E-13 95.9 9.4 93 1-96 314-430 (714)
133 TIGR02440 FadJ fatty oxidation 98.8 9.8E-09 2.1E-13 96.5 8.7 93 1-96 305-422 (699)
134 PRK11154 fadJ multifunctional 98.8 8.9E-09 1.9E-13 96.9 8.1 93 1-96 310-427 (708)
135 PRK13303 L-aspartate dehydroge 98.8 3.4E-08 7.3E-13 82.5 10.4 121 1-128 2-130 (265)
136 KOG2711 Glycerol-3-phosphate d 98.8 5.3E-08 1.2E-12 82.1 11.5 133 2-138 23-191 (372)
137 cd05213 NAD_bind_Glutamyl_tRNA 98.8 1.1E-08 2.3E-13 87.5 7.4 91 1-95 179-274 (311)
138 COG4007 Predicted dehydrogenas 98.8 2E-08 4.4E-13 81.5 8.3 105 1-108 2-132 (340)
139 COG1712 Predicted dinucleotide 98.8 8.6E-08 1.9E-12 76.6 11.7 106 1-113 1-113 (255)
140 TIGR02441 fa_ox_alpha_mit fatt 98.8 1.8E-08 3.8E-13 95.1 8.6 91 2-95 337-451 (737)
141 PF02558 ApbA: Ketopantoate re 98.8 1.7E-08 3.7E-13 77.0 6.6 100 3-108 1-114 (151)
142 PF01488 Shikimate_DH: Shikima 98.8 8.4E-09 1.8E-13 77.5 4.7 69 1-69 13-88 (135)
143 PRK13301 putative L-aspartate 98.8 1.1E-07 2.3E-12 78.5 11.5 117 1-125 3-128 (267)
144 PF01113 DapB_N: Dihydrodipico 98.8 4.6E-08 9.9E-13 72.4 8.3 110 1-119 1-122 (124)
145 PTZ00075 Adenosylhomocysteinas 98.8 7E-08 1.5E-12 85.9 10.7 91 1-98 255-345 (476)
146 PRK00048 dihydrodipicolinate r 98.7 8.2E-08 1.8E-12 79.9 10.3 112 1-121 2-117 (257)
147 TIGR00936 ahcY adenosylhomocys 98.7 1.3E-07 2.7E-12 83.2 11.6 101 1-108 196-297 (406)
148 TIGR01921 DAP-DH diaminopimela 98.7 1.6E-07 3.4E-12 80.1 11.6 109 1-118 4-119 (324)
149 COG0673 MviM Predicted dehydro 98.7 2.1E-07 4.5E-12 80.1 12.2 112 1-119 4-125 (342)
150 PLN02494 adenosylhomocysteinas 98.7 1.2E-07 2.7E-12 84.2 10.6 98 1-106 255-354 (477)
151 PRK06444 prephenate dehydrogen 98.7 9.7E-08 2.1E-12 76.1 8.9 80 1-124 1-82 (197)
152 PRK09310 aroDE bifunctional 3- 98.7 8E-08 1.7E-12 86.6 9.0 103 1-118 333-438 (477)
153 COG2423 Predicted ornithine cy 98.7 7.6E-08 1.7E-12 82.3 8.3 110 2-119 132-250 (330)
154 PRK05476 S-adenosyl-L-homocyst 98.7 1.8E-07 4E-12 82.6 10.9 91 1-98 213-303 (425)
155 TIGR00036 dapB dihydrodipicoli 98.7 2.1E-07 4.6E-12 77.8 10.8 114 1-121 2-127 (266)
156 PF00670 AdoHcyase_NAD: S-aden 98.7 1E-07 2.2E-12 73.1 8.1 91 1-98 24-114 (162)
157 PRK07340 ornithine cyclodeamin 98.7 1.2E-07 2.5E-12 80.8 9.3 108 1-118 126-240 (304)
158 PRK06407 ornithine cyclodeamin 98.7 5.8E-08 1.3E-12 82.5 7.3 109 2-118 119-236 (301)
159 PRK06823 ornithine cyclodeamin 98.6 9E-08 2E-12 81.8 7.8 109 2-118 130-246 (315)
160 COG0059 IlvC Ketol-acid reduct 98.6 1.3E-07 2.9E-12 78.7 8.5 88 1-92 19-107 (338)
161 PRK05225 ketol-acid reductoiso 98.6 6.9E-08 1.5E-12 84.9 6.9 87 1-92 37-129 (487)
162 PRK08618 ornithine cyclodeamin 98.6 1.9E-07 4E-12 80.4 8.7 108 2-118 129-245 (325)
163 TIGR01761 thiaz-red thiazoliny 98.6 8.2E-07 1.8E-11 76.7 12.6 108 1-116 4-119 (343)
164 smart00859 Semialdhyde_dh Semi 98.6 1.4E-07 2.9E-12 69.5 6.7 91 2-96 1-101 (122)
165 PLN00203 glutamyl-tRNA reducta 98.6 1.2E-07 2.6E-12 85.9 7.6 68 1-68 267-341 (519)
166 cd00401 AdoHcyase S-adenosyl-L 98.6 5.7E-07 1.2E-11 79.3 10.8 88 2-96 204-291 (413)
167 PRK11579 putative oxidoreducta 98.6 1.2E-06 2.5E-11 76.0 12.6 109 1-118 5-121 (346)
168 PLN02819 lysine-ketoglutarate 98.6 6.5E-07 1.4E-11 86.7 12.0 109 2-118 571-702 (1042)
169 PRK06046 alanine dehydrogenase 98.6 1.9E-07 4E-12 80.4 7.3 108 2-119 131-247 (326)
170 TIGR02992 ectoine_eutC ectoine 98.5 2E-07 4.4E-12 80.1 7.3 89 2-98 131-228 (326)
171 PRK08291 ectoine utilization p 98.5 2.9E-07 6.3E-12 79.3 7.7 88 1-96 133-229 (330)
172 PRK00258 aroE shikimate 5-dehy 98.5 2.9E-07 6.2E-12 77.5 7.4 113 2-118 125-243 (278)
173 PRK12549 shikimate 5-dehydroge 98.5 3.6E-07 7.8E-12 77.1 7.7 111 2-118 129-249 (284)
174 TIGR01763 MalateDH_bact malate 98.5 9.4E-07 2E-11 75.3 10.2 65 1-66 2-79 (305)
175 KOG2304 3-hydroxyacyl-CoA dehy 98.5 7.4E-08 1.6E-12 77.0 2.9 89 2-92 13-130 (298)
176 KOG2666 UDP-glucose/GDP-mannos 98.5 9.6E-07 2.1E-11 74.0 9.5 136 1-140 2-180 (481)
177 PRK00045 hemA glutamyl-tRNA re 98.5 1.8E-07 3.9E-12 83.2 5.4 69 1-69 183-255 (423)
178 TIGR01035 hemA glutamyl-tRNA r 98.5 3.4E-07 7.5E-12 81.3 7.1 69 1-69 181-253 (417)
179 cd01080 NAD_bind_m-THF_DH_Cycl 98.4 9E-07 2E-11 68.9 7.7 73 1-96 45-118 (168)
180 PRK07589 ornithine cyclodeamin 98.4 4.7E-07 1E-11 78.3 6.5 110 2-118 131-248 (346)
181 PRK10206 putative oxidoreducta 98.4 2.7E-06 5.9E-11 73.7 11.1 111 1-118 2-121 (344)
182 KOG2741 Dimeric dihydrodiol de 98.4 3.5E-06 7.6E-11 71.5 11.3 111 2-119 8-130 (351)
183 PF03435 Saccharop_dh: Sacchar 98.4 1.2E-06 2.6E-11 77.0 8.9 115 3-125 1-129 (386)
184 KOG0068 D-3-phosphoglycerate d 98.4 1.4E-06 3.1E-11 73.5 8.6 107 1-111 147-253 (406)
185 PRK06223 malate dehydrogenase; 98.4 9.6E-07 2.1E-11 75.3 7.8 63 1-64 3-78 (307)
186 PF02423 OCD_Mu_crystall: Orni 98.4 5.7E-07 1.2E-11 76.9 6.4 110 2-118 130-247 (313)
187 TIGR00518 alaDH alanine dehydr 98.4 1E-06 2.2E-11 77.1 8.0 92 2-95 169-268 (370)
188 PRK06349 homoserine dehydrogen 98.4 1.4E-06 3E-11 77.6 8.6 119 1-125 4-137 (426)
189 cd01078 NAD_bind_H4MPT_DH NADP 98.4 1.5E-06 3.2E-11 69.1 7.3 91 1-97 29-132 (194)
190 COG0373 HemA Glutamyl-tRNA red 98.3 1.5E-06 3.2E-11 76.2 7.8 66 2-67 180-249 (414)
191 PRK06199 ornithine cyclodeamin 98.3 1.1E-06 2.4E-11 76.9 7.0 89 2-95 157-260 (379)
192 TIGR03215 ac_ald_DH_ac acetald 98.3 4.2E-06 9.1E-11 70.4 9.8 89 1-96 2-97 (285)
193 cd05311 NAD_bind_2_malic_enz N 98.3 2.9E-06 6.3E-11 69.3 8.5 108 1-118 26-150 (226)
194 COG0569 TrkA K+ transport syst 98.3 2.7E-06 5.9E-11 69.4 8.4 68 1-68 1-78 (225)
195 cd05292 LDH_2 A subgroup of L- 98.3 2.6E-06 5.7E-11 72.7 8.4 66 1-66 1-77 (308)
196 cd05297 GH4_alpha_glucosidase_ 98.3 3.9E-06 8.4E-11 74.7 9.6 66 1-66 1-84 (423)
197 PF01118 Semialdhyde_dh: Semia 98.3 1.5E-06 3.2E-11 64.0 5.7 88 2-96 1-99 (121)
198 cd01483 E1_enzyme_family Super 98.3 1.1E-05 2.3E-10 61.0 10.3 113 2-122 1-124 (143)
199 PRK13940 glutamyl-tRNA reducta 98.3 1.5E-06 3.2E-11 77.0 6.0 69 1-69 182-255 (414)
200 cd05291 HicDH_like L-2-hydroxy 98.2 5.2E-06 1.1E-10 70.8 8.6 66 1-66 1-78 (306)
201 TIGR00112 proC pyrroline-5-car 98.2 4.3E-06 9.3E-11 69.1 7.8 70 24-97 10-80 (245)
202 PRK04148 hypothetical protein; 98.2 1.4E-05 3.1E-10 59.5 9.5 90 1-95 18-112 (134)
203 cd05191 NAD_bind_amino_acid_DH 98.2 6.7E-06 1.5E-10 56.7 7.1 62 1-94 24-86 (86)
204 TIGR01850 argC N-acetyl-gamma- 98.2 5.4E-06 1.2E-10 71.9 8.1 89 1-96 1-101 (346)
205 PTZ00117 malate dehydrogenase; 98.2 9.8E-06 2.1E-10 69.5 9.5 63 1-64 6-81 (319)
206 PRK08300 acetaldehyde dehydrog 98.2 1.2E-05 2.6E-10 68.0 9.7 110 1-119 5-130 (302)
207 PF13380 CoA_binding_2: CoA bi 98.2 3.5E-06 7.6E-11 61.6 5.7 104 1-118 1-108 (116)
208 TIGR01809 Shik-DH-AROM shikima 98.2 6.6E-06 1.4E-10 69.4 8.1 115 2-118 127-253 (282)
209 PRK09496 trkA potassium transp 98.2 8.7E-06 1.9E-10 72.9 9.1 69 1-69 1-78 (453)
210 KOG3124 Pyrroline-5-carboxylat 98.2 7.7E-06 1.7E-10 66.8 7.8 93 1-97 1-98 (267)
211 PRK00436 argC N-acetyl-gamma-g 98.2 7.7E-06 1.7E-10 70.9 8.0 88 1-96 3-101 (343)
212 PRK04207 glyceraldehyde-3-phos 98.2 1.3E-05 2.8E-10 69.4 9.2 70 1-70 2-92 (341)
213 PRK06270 homoserine dehydrogen 98.1 2.4E-05 5.2E-10 67.8 10.7 122 1-128 3-161 (341)
214 PRK10669 putative cation:proto 98.1 3.7E-05 8.1E-10 70.9 12.2 109 2-119 419-535 (558)
215 cd01339 LDH-like_MDH L-lactate 98.1 9.8E-06 2.1E-10 68.9 7.8 62 3-65 1-75 (300)
216 PRK14175 bifunctional 5,10-met 98.1 1.3E-05 2.7E-10 67.4 8.2 73 1-96 159-232 (286)
217 PF00056 Ldh_1_N: lactate/mala 98.1 4.7E-06 1E-10 63.0 4.9 65 1-65 1-78 (141)
218 PF02254 TrkA_N: TrkA-N domain 98.1 0.0001 2.2E-09 53.3 11.5 72 3-74 1-80 (116)
219 PF03447 NAD_binding_3: Homose 98.1 2.1E-05 4.6E-10 57.3 7.6 102 7-115 1-114 (117)
220 PRK06718 precorrin-2 dehydroge 98.1 6.6E-05 1.4E-09 60.2 10.9 110 1-110 11-142 (202)
221 COG0169 AroE Shikimate 5-dehyd 98.0 1.9E-05 4.1E-10 66.4 7.8 110 2-118 128-248 (283)
222 PRK03659 glutathione-regulated 98.0 6.4E-05 1.4E-09 69.9 12.0 108 2-118 402-517 (601)
223 PTZ00082 L-lactate dehydrogena 98.0 4.2E-05 9.1E-10 65.7 9.9 63 1-64 7-82 (321)
224 COG2910 Putative NADH-flavin r 98.0 9.1E-06 2E-10 63.3 5.1 65 1-65 1-71 (211)
225 KOG2305 3-hydroxyacyl-CoA dehy 98.0 1.2E-05 2.7E-10 64.6 5.5 92 2-96 5-121 (313)
226 TIGR00561 pntA NAD(P) transhyd 98.0 3.8E-05 8.2E-10 69.5 9.0 88 2-95 166-285 (511)
227 cd01076 NAD_bind_1_Glu_DH NAD( 98.0 4.1E-05 8.9E-10 62.5 8.5 107 1-118 32-158 (227)
228 PRK14189 bifunctional 5,10-met 98.0 3.4E-05 7.4E-10 64.8 8.0 74 1-97 159-233 (285)
229 PF01262 AlaDh_PNT_C: Alanine 98.0 1.6E-05 3.5E-10 61.9 5.7 93 1-95 21-140 (168)
230 PRK12548 shikimate 5-dehydroge 97.9 5.1E-05 1.1E-09 64.3 8.4 112 2-118 128-258 (289)
231 cd00650 LDH_MDH_like NAD-depen 97.9 4.9E-05 1.1E-09 63.4 8.2 62 3-64 1-78 (263)
232 PRK14027 quinate/shikimate deh 97.9 5.1E-05 1.1E-09 64.0 7.9 112 2-118 129-251 (283)
233 cd05294 LDH-like_MDH_nadp A la 97.9 9.1E-05 2E-09 63.3 9.3 64 1-65 1-81 (309)
234 PRK00066 ldh L-lactate dehydro 97.9 0.00011 2.5E-09 62.9 9.8 65 1-65 7-82 (315)
235 PRK14982 acyl-ACP reductase; P 97.9 3.8E-05 8.2E-10 66.2 6.8 109 1-124 156-271 (340)
236 PRK09424 pntA NAD(P) transhydr 97.8 7.8E-05 1.7E-09 67.6 8.7 87 2-95 167-286 (509)
237 cd05211 NAD_bind_Glu_Leu_Phe_V 97.8 0.00017 3.7E-09 58.5 9.9 110 1-120 24-151 (217)
238 PF13460 NAD_binding_10: NADH( 97.8 5.8E-05 1.3E-09 58.9 6.8 62 3-66 1-70 (183)
239 PRK03562 glutathione-regulated 97.8 0.00024 5.2E-09 66.3 11.7 112 2-123 402-522 (621)
240 PRK06392 homoserine dehydrogen 97.8 4.7E-05 1E-09 65.4 6.4 125 1-128 1-152 (326)
241 COG0460 ThrA Homoserine dehydr 97.8 5.6E-05 1.2E-09 64.6 6.8 194 1-212 4-229 (333)
242 PF02882 THF_DHG_CYH_C: Tetrah 97.8 0.00011 2.4E-09 56.6 7.6 75 1-98 37-112 (160)
243 PRK10792 bifunctional 5,10-met 97.8 0.00012 2.7E-09 61.4 8.3 74 1-97 160-234 (285)
244 TIGR00745 apbA_panE 2-dehydrop 97.8 8.6E-05 1.9E-09 62.5 7.5 81 10-96 1-95 (293)
245 PLN02968 Probable N-acetyl-gam 97.8 6.6E-05 1.4E-09 65.9 6.9 88 1-96 39-136 (381)
246 PRK12749 quinate/shikimate deh 97.8 0.00014 3E-09 61.5 8.6 112 2-118 126-255 (288)
247 PRK08374 homoserine dehydrogen 97.8 0.00012 2.6E-09 63.3 8.1 121 1-128 3-158 (336)
248 PRK06719 precorrin-2 dehydroge 97.8 0.00027 5.8E-09 54.4 9.2 107 1-110 14-142 (157)
249 PF03720 UDPG_MGDP_dh_C: UDP-g 97.7 5.9E-05 1.3E-09 54.1 5.1 83 11-96 18-103 (106)
250 PF00899 ThiF: ThiF family; I 97.7 0.0001 2.2E-09 55.2 6.5 114 1-122 3-127 (135)
251 TIGR02354 thiF_fam2 thiamine b 97.7 0.00011 2.4E-09 58.8 7.1 32 1-32 22-54 (200)
252 PRK12550 shikimate 5-dehydroge 97.7 0.00014 3E-09 61.0 7.9 111 2-118 124-238 (272)
253 TIGR02356 adenyl_thiF thiazole 97.7 0.00032 7E-09 56.2 9.6 113 2-122 23-146 (202)
254 PRK14192 bifunctional 5,10-met 97.7 0.00011 2.4E-09 61.9 7.2 73 1-96 160-233 (283)
255 PRK07688 thiamine/molybdopteri 97.7 0.00028 6.1E-09 61.1 9.9 113 2-122 26-151 (339)
256 TIGR03855 NAD_NadX aspartate d 97.7 0.00024 5.2E-09 58.1 8.9 86 26-118 5-95 (229)
257 TIGR02717 AcCoA-syn-alpha acet 97.7 0.00029 6.4E-09 63.2 10.2 107 2-118 9-127 (447)
258 CHL00194 ycf39 Ycf39; Provisio 97.7 0.00011 2.3E-09 62.9 6.9 65 1-65 1-73 (317)
259 cd00300 LDH_like L-lactate deh 97.7 0.00016 3.6E-09 61.5 8.0 63 3-66 1-76 (300)
260 cd01487 E1_ThiF_like E1_ThiF_l 97.7 0.00034 7.5E-09 54.7 8.9 112 2-121 1-123 (174)
261 PRK14874 aspartate-semialdehyd 97.7 0.00011 2.4E-09 63.4 6.4 89 1-96 2-96 (334)
262 PLN02383 aspartate semialdehyd 97.7 0.00012 2.7E-09 63.4 6.7 88 1-95 8-101 (344)
263 TIGR01470 cysG_Nterm siroheme 97.6 0.00088 1.9E-08 53.9 11.0 110 1-110 10-142 (205)
264 COG0771 MurD UDP-N-acetylmuram 97.6 0.00077 1.7E-08 60.1 11.6 125 1-125 8-149 (448)
265 cd05293 LDH_1 A subgroup of L- 97.6 0.00016 3.4E-09 61.9 6.7 63 1-64 4-79 (312)
266 PRK14191 bifunctional 5,10-met 97.6 0.00022 4.8E-09 59.9 7.4 74 1-97 158-232 (285)
267 PRK09496 trkA potassium transp 97.6 0.00068 1.5E-08 60.7 11.0 68 1-68 232-309 (453)
268 cd05212 NAD_bind_m-THF_DH_Cycl 97.6 0.00046 9.9E-09 52.1 8.3 40 49-97 64-103 (140)
269 PRK00683 murD UDP-N-acetylmura 97.6 0.00015 3.2E-09 64.5 6.6 114 1-114 4-130 (418)
270 PRK01710 murD UDP-N-acetylmura 97.6 0.0018 3.9E-08 58.3 13.5 115 1-115 15-146 (458)
271 PRK15076 alpha-galactosidase; 97.6 0.0001 2.3E-09 65.7 5.4 66 1-66 2-85 (431)
272 PRK12475 thiamine/molybdopteri 97.6 0.00048 1E-08 59.6 9.3 114 1-122 25-151 (338)
273 PRK14176 bifunctional 5,10-met 97.6 0.00031 6.8E-09 59.0 7.8 73 1-96 165-238 (287)
274 COG1064 AdhP Zn-dependent alco 97.6 0.00037 8.1E-09 59.8 8.4 44 2-45 169-212 (339)
275 PRK08328 hypothetical protein; 97.6 0.00079 1.7E-08 55.1 10.1 114 2-123 29-154 (231)
276 PRK01390 murD UDP-N-acetylmura 97.6 0.00049 1.1E-08 62.0 9.6 117 2-118 11-146 (460)
277 PRK03369 murD UDP-N-acetylmura 97.6 0.0013 2.8E-08 59.7 12.3 124 1-124 13-155 (488)
278 cd00757 ThiF_MoeB_HesA_family 97.5 0.00071 1.5E-08 55.3 9.2 113 2-122 23-146 (228)
279 PRK02472 murD UDP-N-acetylmura 97.5 0.0026 5.7E-08 56.9 13.6 114 2-115 7-137 (447)
280 TIGR02355 moeB molybdopterin s 97.5 0.00078 1.7E-08 55.5 9.2 114 2-123 26-150 (240)
281 PRK05086 malate dehydrogenase; 97.5 0.0005 1.1E-08 58.8 8.3 65 1-65 1-78 (312)
282 COG0686 Ald Alanine dehydrogen 97.5 0.00014 3E-09 61.2 4.6 90 2-94 170-268 (371)
283 PRK00141 murD UDP-N-acetylmura 97.5 0.0025 5.4E-08 57.7 13.1 115 1-115 16-150 (473)
284 PRK00676 hemA glutamyl-tRNA re 97.5 0.00032 7E-09 60.3 6.8 58 1-63 175-233 (338)
285 PRK08223 hypothetical protein; 97.5 0.00089 1.9E-08 56.4 9.3 123 2-136 29-163 (287)
286 PF05368 NmrA: NmrA-like famil 97.5 0.00033 7.1E-09 57.0 6.6 64 3-66 1-74 (233)
287 cd01492 Aos1_SUMO Ubiquitin ac 97.4 0.0012 2.6E-08 52.7 9.3 114 1-123 22-146 (197)
288 cd01485 E1-1_like Ubiquitin ac 97.4 0.0015 3.2E-08 52.2 9.8 116 1-123 20-149 (198)
289 PRK14178 bifunctional 5,10-met 97.4 0.00046 1E-08 57.8 7.1 74 1-97 153-227 (279)
290 PRK14183 bifunctional 5,10-met 97.4 0.00064 1.4E-08 57.0 7.9 74 1-97 158-232 (281)
291 PRK05690 molybdopterin biosynt 97.4 0.0015 3.2E-08 54.0 10.0 114 2-123 34-158 (245)
292 PRK14106 murD UDP-N-acetylmura 97.4 0.0014 3E-08 58.8 10.5 113 1-113 6-135 (450)
293 PRK08644 thiamine biosynthesis 97.4 0.0012 2.5E-08 53.5 8.9 111 2-120 30-151 (212)
294 COG0002 ArgC Acetylglutamate s 97.4 0.0006 1.3E-08 58.3 7.3 89 1-96 3-103 (349)
295 PRK02318 mannitol-1-phosphate 97.4 0.00032 7E-09 61.7 5.9 43 1-43 1-44 (381)
296 PRK05678 succinyl-CoA syntheta 97.4 0.0016 3.5E-08 55.1 9.8 113 2-122 10-126 (291)
297 TIGR01546 GAPDH-II_archae glyc 97.4 0.00072 1.6E-08 58.2 7.7 67 3-69 1-88 (333)
298 PLN02520 bifunctional 3-dehydr 97.4 0.001 2.2E-08 61.0 9.1 112 2-118 381-497 (529)
299 PF10100 DUF2338: Uncharacteri 97.4 0.023 4.9E-07 49.8 16.4 67 2-68 3-95 (429)
300 PRK03803 murD UDP-N-acetylmura 97.4 0.0024 5.2E-08 57.3 11.2 124 2-125 8-147 (448)
301 cd05290 LDH_3 A subgroup of L- 97.4 0.00049 1.1E-08 58.7 6.4 64 2-65 1-77 (307)
302 cd01079 NAD_bind_m-THF_DH NAD 97.3 0.0011 2.3E-08 52.5 7.7 86 1-97 63-159 (197)
303 PRK05472 redox-sensing transcr 97.3 0.0004 8.6E-09 56.1 5.5 67 2-69 86-159 (213)
304 PLN02602 lactate dehydrogenase 97.3 0.00055 1.2E-08 59.4 6.7 63 1-64 38-113 (350)
305 TIGR00978 asd_EA aspartate-sem 97.3 0.00056 1.2E-08 59.3 6.7 89 1-96 1-106 (341)
306 PRK05671 aspartate-semialdehyd 97.3 0.00041 8.9E-09 59.9 5.8 88 1-96 5-99 (336)
307 PRK08306 dipicolinate synthase 97.3 0.00092 2E-08 56.8 7.8 110 2-119 4-121 (296)
308 PF13241 NAD_binding_7: Putati 97.3 0.00049 1.1E-08 49.1 5.2 65 2-70 9-74 (103)
309 TIGR03649 ergot_EASG ergot alk 97.3 0.00053 1.2E-08 57.4 6.2 65 2-66 1-77 (285)
310 KOG3007 Mu-crystallin [Amino a 97.3 0.00079 1.7E-08 55.5 6.8 107 3-118 141-260 (333)
311 cd01338 MDH_choloroplast_like 97.3 0.00094 2E-08 57.4 7.7 65 1-65 3-87 (322)
312 TIGR01082 murC UDP-N-acetylmur 97.3 0.0033 7.1E-08 56.5 11.4 112 2-113 1-126 (448)
313 PRK00421 murC UDP-N-acetylmura 97.3 0.0032 7E-08 56.7 11.5 113 1-113 8-134 (461)
314 PLN02477 glutamate dehydrogena 97.3 0.0016 3.5E-08 57.6 9.2 162 1-193 207-392 (410)
315 PRK11863 N-acetyl-gamma-glutam 97.3 0.00053 1.2E-08 58.5 6.0 78 1-95 3-82 (313)
316 COG0289 DapB Dihydrodipicolina 97.3 0.0029 6.2E-08 52.3 10.0 110 1-119 3-124 (266)
317 TIGR01851 argC_other N-acetyl- 97.3 0.0013 2.9E-08 55.9 8.1 76 2-95 3-81 (310)
318 PRK14173 bifunctional 5,10-met 97.3 0.0014 3E-08 55.2 8.1 74 1-97 156-230 (287)
319 TIGR01296 asd_B aspartate-semi 97.3 0.00042 9E-09 60.0 5.0 87 2-95 1-93 (339)
320 TIGR01019 sucCoAalpha succinyl 97.3 0.003 6.5E-08 53.3 10.0 109 2-118 8-120 (286)
321 TIGR01759 MalateDH-SF1 malate 97.2 0.002 4.3E-08 55.4 8.9 65 1-65 4-88 (323)
322 COG0499 SAM1 S-adenosylhomocys 97.2 0.0035 7.7E-08 53.9 10.2 96 2-104 211-310 (420)
323 PRK14177 bifunctional 5,10-met 97.2 0.0016 3.5E-08 54.7 8.1 74 1-97 160-234 (284)
324 TIGR01087 murD UDP-N-acetylmur 97.2 0.002 4.3E-08 57.5 9.2 123 2-124 1-140 (433)
325 PRK14170 bifunctional 5,10-met 97.2 0.0018 3.8E-08 54.5 8.1 74 1-97 158-232 (284)
326 PRK14193 bifunctional 5,10-met 97.2 0.0018 3.8E-08 54.5 8.1 74 1-97 159-235 (284)
327 PRK05442 malate dehydrogenase; 97.2 0.001 2.2E-08 57.2 6.9 65 1-65 5-89 (326)
328 PRK14172 bifunctional 5,10-met 97.2 0.0018 3.8E-08 54.3 8.0 74 1-97 159-233 (278)
329 PRK14186 bifunctional 5,10-met 97.2 0.0018 3.9E-08 54.8 8.1 74 1-97 159-233 (297)
330 PRK06728 aspartate-semialdehyd 97.2 0.00085 1.8E-08 58.1 6.3 88 1-96 6-101 (347)
331 PF02629 CoA_binding: CoA bind 97.2 0.00023 5.1E-09 50.0 2.4 71 2-74 5-79 (96)
332 PLN02516 methylenetetrahydrofo 97.2 0.0018 4E-08 54.7 8.1 74 1-97 168-242 (299)
333 PLN00112 malate dehydrogenase 97.2 0.0017 3.6E-08 58.0 8.2 64 2-65 102-185 (444)
334 PRK14166 bifunctional 5,10-met 97.2 0.0019 4.2E-08 54.2 8.0 74 1-97 158-232 (282)
335 PRK05597 molybdopterin biosynt 97.2 0.0026 5.6E-08 55.5 8.9 114 2-123 30-154 (355)
336 PRK14190 bifunctional 5,10-met 97.2 0.0019 4.1E-08 54.3 7.7 74 1-97 159-233 (284)
337 cd01336 MDH_cytoplasmic_cytoso 97.2 0.0016 3.5E-08 56.1 7.5 64 1-64 3-86 (325)
338 COG0039 Mdh Malate/lactate deh 97.1 0.0021 4.6E-08 54.7 7.9 64 1-64 1-77 (313)
339 PRK14169 bifunctional 5,10-met 97.1 0.0023 5E-08 53.7 8.0 74 1-97 157-231 (282)
340 cd00704 MDH Malate dehydrogena 97.1 0.0012 2.5E-08 56.8 6.4 64 1-64 1-84 (323)
341 COG1063 Tdh Threonine dehydrog 97.1 0.0031 6.6E-08 54.9 9.0 88 2-96 171-271 (350)
342 PRK09414 glutamate dehydrogena 97.1 0.0024 5.1E-08 57.1 8.3 109 1-117 233-365 (445)
343 PRK14180 bifunctional 5,10-met 97.1 0.0023 4.9E-08 53.8 7.7 74 1-97 159-233 (282)
344 PLN02353 probable UDP-glucose 97.1 0.0045 9.8E-08 56.0 10.2 108 1-117 325-464 (473)
345 TIGR03366 HpnZ_proposed putati 97.1 0.0056 1.2E-07 51.2 10.2 44 2-45 123-167 (280)
346 PRK01438 murD UDP-N-acetylmura 97.1 0.0068 1.5E-07 54.9 11.3 114 2-115 18-151 (480)
347 PRK14187 bifunctional 5,10-met 97.1 0.0025 5.5E-08 53.8 7.9 74 1-97 161-235 (294)
348 PLN03209 translocon at the inn 97.1 0.0066 1.4E-07 55.8 11.0 64 2-65 82-168 (576)
349 PRK08040 putative semialdehyde 97.1 0.00092 2E-08 57.7 5.3 87 1-95 5-98 (336)
350 cd01337 MDH_glyoxysomal_mitoch 97.1 0.0017 3.6E-08 55.5 6.7 65 1-65 1-77 (310)
351 cd08230 glucose_DH Glucose deh 97.1 0.0045 9.7E-08 53.6 9.5 45 2-46 175-222 (355)
352 PRK14171 bifunctional 5,10-met 97.0 0.0031 6.8E-08 53.1 7.9 74 1-97 160-234 (288)
353 PRK08664 aspartate-semialdehyd 97.0 0.002 4.3E-08 56.0 7.0 87 1-95 4-108 (349)
354 PRK09880 L-idonate 5-dehydroge 97.0 0.0064 1.4E-07 52.4 10.2 44 2-45 172-216 (343)
355 TIGR01757 Malate-DH_plant mala 97.0 0.0032 6.9E-08 55.4 8.2 64 2-65 46-129 (387)
356 PRK07878 molybdopterin biosynt 97.0 0.0041 9E-08 54.9 9.0 115 2-124 44-169 (392)
357 PRK02006 murD UDP-N-acetylmura 97.0 0.013 2.9E-07 53.3 12.5 114 2-115 9-150 (498)
358 PLN00106 malate dehydrogenase 97.0 0.0037 8.1E-08 53.7 8.3 65 1-65 19-95 (323)
359 PRK14182 bifunctional 5,10-met 97.0 0.0038 8.3E-08 52.4 8.0 74 1-97 158-232 (282)
360 PRK14851 hypothetical protein; 97.0 0.0052 1.1E-07 57.8 9.6 115 2-123 45-171 (679)
361 KOG1502 Flavonol reductase/cin 97.0 0.0023 4.9E-08 54.7 6.5 64 1-64 7-86 (327)
362 PRK03815 murD UDP-N-acetylmura 96.9 0.0065 1.4E-07 53.8 9.5 107 1-113 1-116 (401)
363 PRK06813 homoserine dehydrogen 96.9 0.0047 1E-07 53.6 8.3 121 1-127 3-157 (346)
364 TIGR01772 MDH_euk_gproteo mala 96.9 0.0026 5.6E-08 54.5 6.6 64 2-65 1-76 (312)
365 PRK14168 bifunctional 5,10-met 96.9 0.0046 9.9E-08 52.3 8.0 74 1-97 162-240 (297)
366 TIGR03466 HpnA hopanoid-associ 96.9 0.0014 2.9E-08 55.7 4.9 65 1-65 1-73 (328)
367 PLN02897 tetrahydrofolate dehy 96.9 0.0042 9.2E-08 53.4 7.8 74 1-97 215-289 (345)
368 cd05313 NAD_bind_2_Glu_DH NAD( 96.9 0.0064 1.4E-07 50.4 8.6 110 1-118 39-176 (254)
369 PRK14181 bifunctional 5,10-met 96.9 0.0049 1.1E-07 51.9 7.9 74 1-97 154-232 (287)
370 PLN02616 tetrahydrofolate dehy 96.9 0.0044 9.6E-08 53.6 7.8 74 1-97 232-306 (364)
371 PRK05600 thiamine biosynthesis 96.9 0.0061 1.3E-07 53.4 8.7 113 2-122 43-166 (370)
372 PRK02705 murD UDP-N-acetylmura 96.9 0.0093 2E-07 53.6 10.0 114 2-115 2-138 (459)
373 PRK08762 molybdopterin biosynt 96.9 0.0089 1.9E-07 52.5 9.6 114 2-123 137-261 (376)
374 PRK04663 murD UDP-N-acetylmura 96.8 0.014 3E-07 52.3 10.9 123 1-124 8-146 (438)
375 PRK04308 murD UDP-N-acetylmura 96.8 0.031 6.8E-07 50.1 13.2 115 1-115 6-139 (445)
376 COG2344 AT-rich DNA-binding pr 96.8 0.0017 3.6E-08 50.9 4.2 72 2-74 86-163 (211)
377 PRK14852 hypothetical protein; 96.8 0.0084 1.8E-07 58.1 9.7 116 2-124 334-461 (989)
378 COG0026 PurK Phosphoribosylami 96.8 0.0026 5.7E-08 54.9 5.7 62 1-62 2-68 (375)
379 PRK00961 H(2)-dependent methyl 96.8 0.0022 4.9E-08 53.1 5.0 79 43-124 128-209 (342)
380 cd01491 Ube1_repeat1 Ubiquitin 96.8 0.013 2.9E-07 49.4 9.8 109 2-122 21-140 (286)
381 PRK14185 bifunctional 5,10-met 96.8 0.0064 1.4E-07 51.4 7.9 74 1-97 158-236 (293)
382 PLN00141 Tic62-NAD(P)-related 96.8 0.0042 9.1E-08 51.1 6.8 66 1-66 18-95 (251)
383 PRK07411 hypothetical protein; 96.8 0.0086 1.9E-07 52.9 9.0 114 2-123 40-164 (390)
384 TIGR01723 hmd_TIGR 5,10-methen 96.8 0.0024 5.2E-08 53.0 4.9 69 43-114 126-194 (340)
385 PRK08309 short chain dehydroge 96.8 0.013 2.7E-07 46.1 8.9 101 1-114 1-101 (177)
386 PRK12769 putative oxidoreducta 96.8 0.006 1.3E-07 57.5 8.3 65 1-65 328-421 (654)
387 PRK14030 glutamate dehydrogena 96.8 0.006 1.3E-07 54.5 7.8 110 1-118 229-366 (445)
388 COG1648 CysG Siroheme synthase 96.7 0.038 8.3E-07 44.6 11.7 109 1-110 13-145 (210)
389 TIGR01758 MDH_euk_cyt malate d 96.7 0.0037 8.1E-08 53.8 6.0 64 2-65 1-84 (324)
390 TIGR02130 dapB_plant dihydrodi 96.7 0.032 6.9E-07 46.7 11.1 110 2-121 2-125 (275)
391 PRK10538 malonic semialdehyde 96.7 0.014 3E-07 47.7 9.0 40 1-40 1-41 (248)
392 PRK12809 putative oxidoreducta 96.7 0.0073 1.6E-07 56.7 8.1 66 1-66 311-405 (639)
393 PRK14031 glutamate dehydrogena 96.7 0.011 2.4E-07 52.8 8.8 109 1-117 229-364 (444)
394 PLN02427 UDP-apiose/xylose syn 96.6 0.0048 1E-07 54.1 6.4 64 1-64 15-94 (386)
395 PRK03806 murD UDP-N-acetylmura 96.6 0.036 7.8E-07 49.5 12.1 122 2-124 8-143 (438)
396 PRK14184 bifunctional 5,10-met 96.6 0.008 1.7E-07 50.6 7.2 74 1-97 158-236 (286)
397 PRK14573 bifunctional D-alanyl 96.6 0.019 4.1E-07 55.5 10.7 112 2-113 6-131 (809)
398 PTZ00325 malate dehydrogenase; 96.6 0.0036 7.8E-08 53.8 5.2 64 2-65 10-85 (321)
399 COG0136 Asd Aspartate-semialde 96.6 0.0063 1.4E-07 52.1 6.5 89 1-96 2-99 (334)
400 PRK05562 precorrin-2 dehydroge 96.6 0.052 1.1E-06 44.1 11.4 109 1-110 26-158 (223)
401 COG5495 Uncharacterized conser 96.6 0.0063 1.4E-07 49.3 5.8 131 1-140 11-148 (289)
402 PRK06598 aspartate-semialdehyd 96.5 0.0055 1.2E-07 53.5 5.9 87 1-95 2-99 (369)
403 PRK01368 murD UDP-N-acetylmura 96.5 0.031 6.8E-07 50.4 10.9 122 2-124 8-142 (454)
404 PF02056 Glyco_hydro_4: Family 96.5 0.0037 8E-08 49.2 4.4 65 2-66 1-83 (183)
405 PF00208 ELFV_dehydrog: Glutam 96.5 0.0072 1.6E-07 49.9 6.3 110 1-118 33-169 (244)
406 PRK14167 bifunctional 5,10-met 96.5 0.014 2.9E-07 49.5 8.0 74 1-97 158-236 (297)
407 PRK14174 bifunctional 5,10-met 96.5 0.012 2.5E-07 49.9 7.6 74 1-97 160-238 (295)
408 PLN02775 Probable dihydrodipic 96.5 0.029 6.2E-07 47.2 9.7 112 1-121 12-136 (286)
409 PRK11908 NAD-dependent epimera 96.5 0.0073 1.6E-07 52.1 6.3 63 1-63 2-75 (347)
410 TIGR01318 gltD_gamma_fam gluta 96.5 0.015 3.2E-07 52.6 8.4 66 1-66 142-236 (467)
411 PRK06182 short chain dehydroge 96.5 0.024 5.2E-07 47.0 9.2 40 2-41 5-45 (273)
412 PRK05865 hypothetical protein; 96.5 0.0068 1.5E-07 58.4 6.5 62 1-65 1-70 (854)
413 TIGR01771 L-LDH-NAD L-lactate 96.4 0.0054 1.2E-07 52.2 5.2 61 5-65 1-73 (299)
414 cd00755 YgdL_like Family of ac 96.4 0.038 8.2E-07 45.3 10.0 111 2-122 13-137 (231)
415 cd05197 GH4_glycoside_hydrolas 96.4 0.0082 1.8E-07 53.6 6.5 65 1-65 1-83 (425)
416 PRK12814 putative NADPH-depend 96.4 0.013 2.7E-07 55.3 8.1 66 1-66 194-288 (652)
417 COG0702 Predicted nucleoside-d 96.4 0.0093 2E-07 49.2 6.5 64 1-65 1-72 (275)
418 PLN02662 cinnamyl-alcohol dehy 96.4 0.013 2.7E-07 49.8 7.4 65 1-65 5-85 (322)
419 TIGR03201 dearomat_had 6-hydro 96.4 0.031 6.8E-07 48.2 9.9 43 2-44 169-211 (349)
420 cd01484 E1-2_like Ubiquitin ac 96.4 0.026 5.6E-07 46.3 8.8 116 2-123 1-127 (234)
421 cd01486 Apg7 Apg7 is an E1-lik 96.4 0.0095 2.1E-07 50.5 6.3 32 2-33 1-33 (307)
422 PF04016 DUF364: Domain of unk 96.4 0.0022 4.7E-08 48.8 2.2 105 1-119 12-116 (147)
423 PF00070 Pyr_redox: Pyridine n 96.4 0.0084 1.8E-07 40.3 4.8 35 2-36 1-35 (80)
424 cd01489 Uba2_SUMO Ubiquitin ac 96.3 0.031 6.8E-07 47.8 9.3 126 2-139 1-137 (312)
425 TIGR00715 precor6x_red precorr 96.3 0.036 7.7E-07 46.1 9.4 96 1-118 1-98 (256)
426 COG0190 FolD 5,10-methylene-te 96.3 0.017 3.7E-07 48.3 7.2 74 1-97 157-231 (283)
427 cd05188 MDR Medium chain reduc 96.3 0.036 7.9E-07 45.2 9.3 87 2-95 137-233 (271)
428 cd08245 CAD Cinnamyl alcohol d 96.3 0.031 6.8E-07 47.5 9.1 86 2-94 165-256 (330)
429 TIGR01777 yfcH conserved hypot 96.3 0.0066 1.4E-07 50.6 4.8 63 3-65 1-66 (292)
430 PRK06180 short chain dehydroge 96.3 0.029 6.2E-07 46.8 8.6 40 2-41 6-46 (277)
431 TIGR02822 adh_fam_2 zinc-bindi 96.3 0.027 5.9E-07 48.3 8.7 67 2-68 168-235 (329)
432 PRK00517 prmA ribosomal protei 96.3 0.035 7.7E-07 45.9 9.0 110 2-118 122-236 (250)
433 cd08239 THR_DH_like L-threonin 96.3 0.035 7.6E-07 47.5 9.4 43 2-44 166-209 (339)
434 cd01488 Uba3_RUB Ubiquitin act 96.3 0.012 2.6E-07 49.8 6.2 34 2-35 1-35 (291)
435 PRK06153 hypothetical protein; 96.3 0.03 6.4E-07 49.1 8.7 111 2-121 178-300 (393)
436 COG0451 WcaG Nucleoside-diphos 96.2 0.0081 1.7E-07 50.5 5.2 64 1-64 1-72 (314)
437 TIGR03736 PRTRC_ThiF PRTRC sys 96.2 0.023 4.9E-07 46.9 7.7 40 1-40 12-62 (244)
438 PRK08017 oxidoreductase; Provi 96.2 0.012 2.5E-07 48.2 6.1 43 2-44 4-47 (256)
439 cd01490 Ube1_repeat2 Ubiquitin 96.2 0.023 5.1E-07 50.7 8.2 125 2-137 1-143 (435)
440 PRK08340 glucose-1-dehydrogena 96.2 0.027 5.8E-07 46.3 8.2 40 1-40 1-41 (259)
441 COG1832 Predicted CoA-binding 96.2 0.071 1.5E-06 39.7 9.3 102 1-114 17-122 (140)
442 PRK12409 D-amino acid dehydrog 96.2 0.0068 1.5E-07 53.5 4.8 32 2-33 3-34 (410)
443 PRK05693 short chain dehydroge 96.2 0.041 8.8E-07 45.7 9.3 40 2-41 3-43 (274)
444 PRK00711 D-amino acid dehydrog 96.2 0.007 1.5E-07 53.4 4.9 34 1-34 1-34 (416)
445 PRK06753 hypothetical protein; 96.2 0.0068 1.5E-07 52.7 4.7 34 1-34 1-34 (373)
446 PRK10537 voltage-gated potassi 96.2 0.085 1.8E-06 46.7 11.5 106 2-119 242-356 (393)
447 PRK05993 short chain dehydroge 96.2 0.033 7.3E-07 46.4 8.7 42 2-43 6-48 (277)
448 cd08237 ribitol-5-phosphate_DH 96.2 0.038 8.3E-07 47.6 9.2 62 2-65 166-231 (341)
449 cd08281 liver_ADH_like1 Zinc-d 96.2 0.053 1.2E-06 47.2 10.1 43 2-44 194-237 (371)
450 TIGR01202 bchC 2-desacetyl-2-h 96.2 0.03 6.6E-07 47.5 8.3 38 2-39 147-185 (308)
451 COG0476 ThiF Dinucleotide-util 96.2 0.048 1E-06 45.1 9.3 125 2-139 32-167 (254)
452 PLN02695 GDP-D-mannose-3',5'-e 96.2 0.0064 1.4E-07 53.2 4.3 64 1-64 22-93 (370)
453 COG4091 Predicted homoserine d 96.1 0.022 4.7E-07 49.0 7.0 40 2-41 19-60 (438)
454 cd01493 APPBP1_RUB Ubiquitin a 96.1 0.05 1.1E-06 48.6 9.6 117 2-124 22-149 (425)
455 KOG2012 Ubiquitin activating e 96.1 0.026 5.7E-07 53.3 8.0 108 2-120 39-156 (1013)
456 PLN02896 cinnamyl-alcohol dehy 96.1 0.019 4.2E-07 49.6 6.9 64 1-64 11-87 (353)
457 PRK15116 sulfur acceptor prote 96.1 0.057 1.2E-06 45.2 9.3 107 2-118 32-152 (268)
458 PLN00016 RNA-binding protein; 96.1 0.075 1.6E-06 46.5 10.6 36 1-36 53-93 (378)
459 COG0334 GdhA Glutamate dehydro 96.1 0.025 5.4E-07 49.7 7.3 106 1-116 208-332 (411)
460 TIGR03026 NDP-sugDHase nucleot 96.1 0.033 7.1E-07 49.5 8.4 85 2-93 315-409 (411)
461 KOG1370 S-adenosylhomocysteine 96.1 0.037 8.1E-07 46.8 8.0 87 4-97 218-304 (434)
462 PTZ00079 NADP-specific glutama 96.1 0.036 7.8E-07 49.6 8.5 110 1-118 238-375 (454)
463 PRK12771 putative glutamate sy 96.1 0.02 4.3E-07 53.0 7.2 66 1-66 138-232 (564)
464 PRK05653 fabG 3-ketoacyl-(acyl 96.1 0.032 7E-07 45.0 7.7 38 2-39 7-45 (246)
465 PRK12429 3-hydroxybutyrate deh 96.0 0.032 7E-07 45.5 7.7 39 2-40 6-45 (258)
466 PLN02657 3,8-divinyl protochlo 96.0 0.0068 1.5E-07 53.5 3.9 65 1-65 61-145 (390)
467 PRK12939 short chain dehydroge 96.0 0.036 7.9E-07 45.0 8.0 40 1-40 8-48 (250)
468 PRK12828 short chain dehydroge 96.0 0.058 1.3E-06 43.3 9.1 37 2-38 9-46 (239)
469 PF13450 NAD_binding_8: NAD(P) 96.0 0.012 2.5E-07 38.6 4.1 31 5-35 1-31 (68)
470 PRK12779 putative bifunctional 96.0 0.02 4.2E-07 56.2 7.3 65 1-65 307-401 (944)
471 PRK07877 hypothetical protein; 96.0 0.047 1E-06 51.8 9.5 112 2-122 109-231 (722)
472 PRK06019 phosphoribosylaminoim 96.0 0.018 3.9E-07 50.5 6.4 62 1-62 3-69 (372)
473 COG1090 Predicted nucleoside-d 96.0 0.01 2.2E-07 49.5 4.5 58 7-64 6-64 (297)
474 PRK05866 short chain dehydroge 96.0 0.039 8.6E-07 46.5 8.3 39 2-40 42-81 (293)
475 PRK07326 short chain dehydroge 96.0 0.033 7.1E-07 44.9 7.5 39 2-40 8-47 (237)
476 cd05298 GH4_GlvA_pagL_like Gly 96.0 0.022 4.7E-07 51.0 6.9 65 1-65 1-83 (437)
477 PRK05884 short chain dehydroge 96.0 0.017 3.6E-07 46.7 5.8 41 1-41 1-42 (223)
478 PRK09436 thrA bifunctional asp 96.0 0.022 4.7E-07 55.0 7.3 119 1-126 466-615 (819)
479 PRK07454 short chain dehydroge 96.0 0.037 8.1E-07 44.8 7.8 39 2-40 8-47 (241)
480 cd05296 GH4_P_beta_glucosidase 96.0 0.021 4.5E-07 50.9 6.7 65 1-65 1-84 (419)
481 PRK07825 short chain dehydroge 96.0 0.048 1E-06 45.2 8.5 39 2-40 7-46 (273)
482 COG0493 GltD NADPH-dependent g 96.0 0.029 6.3E-07 50.5 7.5 66 1-66 124-218 (457)
483 TIGR01532 E4PD_g-proteo D-eryt 96.0 0.031 6.8E-07 48.1 7.4 28 2-29 1-32 (325)
484 PRK12829 short chain dehydroge 95.9 0.043 9.3E-07 45.0 8.0 41 1-41 12-53 (264)
485 PRK12810 gltD glutamate syntha 95.9 0.033 7.2E-07 50.4 7.9 66 1-66 144-238 (471)
486 PLN02214 cinnamoyl-CoA reducta 95.9 0.024 5.3E-07 48.9 6.7 65 1-65 11-90 (342)
487 PRK06057 short chain dehydroge 95.9 0.065 1.4E-06 43.9 9.0 39 2-40 9-48 (255)
488 COG1004 Ugd Predicted UDP-gluc 95.9 0.045 9.7E-07 47.9 8.1 87 2-94 312-408 (414)
489 PRK07774 short chain dehydroge 95.9 0.044 9.5E-07 44.6 7.9 39 1-39 7-46 (250)
490 KOG0022 Alcohol dehydrogenase, 95.9 0.052 1.1E-06 46.2 8.1 51 2-52 195-246 (375)
491 PLN02650 dihydroflavonol-4-red 95.9 0.032 6.9E-07 48.2 7.3 64 1-64 6-85 (351)
492 PRK12320 hypothetical protein; 95.9 0.017 3.8E-07 54.5 5.9 63 1-66 1-70 (699)
493 PLN02740 Alcohol dehydrogenase 95.9 0.092 2E-06 46.0 10.2 43 2-44 201-244 (381)
494 PRK08265 short chain dehydroge 95.8 0.059 1.3E-06 44.4 8.5 40 2-41 8-48 (261)
495 PF01494 FAD_binding_3: FAD bi 95.8 0.013 2.9E-07 49.8 4.8 34 2-35 3-36 (356)
496 PRK07538 hypothetical protein; 95.8 0.012 2.6E-07 52.1 4.6 34 1-34 1-34 (413)
497 COG0300 DltE Short-chain dehyd 95.8 0.067 1.4E-06 44.7 8.6 40 2-41 8-48 (265)
498 PRK06139 short chain dehydroge 95.8 0.047 1E-06 47.1 8.0 39 2-40 9-48 (330)
499 cd05283 CAD1 Cinnamyl alcohol 95.8 0.061 1.3E-06 46.1 8.8 43 2-44 172-214 (337)
500 COG2227 UbiG 2-polyprenyl-3-me 95.8 0.18 3.8E-06 41.3 10.7 86 1-94 61-161 (243)
No 1
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=100.00 E-value=1.6e-55 Score=365.04 Aligned_cols=220 Identities=40% Similarity=0.667 Sum_probs=213.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|||+|||+|.||.+||+||.++||+|++|||++++ .+.+...|+..+.++.|+++++|+||+|+|++.++++|++|+++
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 68999999999999999999999999999999999 66677779999999999999999999999999999999999999
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-------------------
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------------- 140 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------- 140 (226)
+.+.+++|+++|||||++|..++++++.++++|+.|+|+||+|++..+++|+|++|+||++
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~ 160 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVH 160 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEE
Confidence 9999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHH
Q 027255 141 ----------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 174 (226)
Q Consensus 141 ----------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 174 (226)
..++..||+++.+.++|++++|+|+|+++++.||
T Consensus 161 ~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KD 240 (286)
T COG2084 161 VGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKD 240 (286)
T ss_pred ECCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHH
Confidence 4567899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255 175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 220 (226)
Q Consensus 175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 220 (226)
++++++++++.|+++|+++++.++|+.+.+.|+|++|++++++.++
T Consensus 241 l~la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 241 LGLALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 9999999999999999999999999999999999999999999874
No 2
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=100.00 E-value=2.3e-53 Score=346.84 Aligned_cols=225 Identities=43% Similarity=0.747 Sum_probs=218.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|+||++|+.||.++||.|++|||+.+++++|++.|++++.+|.|+++.+|+||+|+|++.+++++++|+.++
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gv 115 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGV 115 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcEE-EecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-------------------
Q 027255 81 LEQICPGKGY-IDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------------- 140 (226)
Q Consensus 81 ~~~l~~g~iv-vd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------- 140 (226)
++.++++... ||+||++|.++++|++.+..++.+|+|+||+|+..+|++|+|+||+|||+
T Consensus 116 l~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~ 195 (327)
T KOG0409|consen 116 LSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVF 195 (327)
T ss_pred eeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEE
Confidence 9999999887 99999999999999999999999999999999999999999999999998
Q ss_pred ----------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHH
Q 027255 141 ----------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKD 174 (226)
Q Consensus 141 ----------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd 174 (226)
+.|..+|+++.++.|.|..++|.|+|.++++.||
T Consensus 196 ~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KD 275 (327)
T KOG0409|consen 196 LGGVGNGQAAKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKD 275 (327)
T ss_pred ecccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHH
Confidence 5688899999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhccC
Q 027255 175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLKRS 225 (226)
Q Consensus 175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~~~ 225 (226)
++++.+.++..+.|+|+...++|+|+.+.+.|+|+.||+++|+.+++.+..
T Consensus 276 Lgla~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~~~~~ 326 (327)
T KOG0409|consen 276 LGLALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRRLNGI 326 (327)
T ss_pred HHHHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999999876543
No 3
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=6.5e-47 Score=319.33 Aligned_cols=222 Identities=29% Similarity=0.493 Sum_probs=209.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|||||||+|.||.+||++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|+|++.+++++++++.++
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~ 79 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGC 79 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcch
Confidence 7999999999999999999999999999999985 577888899889999999999999999999999999999887788
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-------------------- 140 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-------------------- 140 (226)
.+.+.+|++|||+||++|.+++++++.+.++|+.|+|+||+|++.+++.|++++|+||++
T Consensus 80 ~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~ 159 (292)
T PRK15059 80 TKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLV 159 (292)
T ss_pred hccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEe
Confidence 888889999999999999999999999999999999999999999999999999999997
Q ss_pred ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255 141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 175 (226)
Q Consensus 141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 175 (226)
..+.+.|++++.+.+++.+++|.++|+++++.||+
T Consensus 160 G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl 239 (292)
T PRK15059 160 GGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDL 239 (292)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHH
Confidence 34567789999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhhc
Q 027255 176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDLK 223 (226)
Q Consensus 176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 223 (226)
+++++++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++..
T Consensus 240 ~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~~ 287 (292)
T PRK15059 240 NLALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELMA 287 (292)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999998754
No 4
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=100.00 E-value=5e-45 Score=308.80 Aligned_cols=222 Identities=32% Similarity=0.513 Sum_probs=206.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|+|||+|.||.+||++|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.+++.++++.+++
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 38999999999999999999999999999999999999999999889999999999999999999988899999877788
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-------------------- 140 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-------------------- 140 (226)
.+.+++++++||+||+.|...+++++.+.++|+.|+|+||+|++..++.|++++|+||++
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~ 161 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINA 161 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEee
Confidence 888889999999999999999999999999999999999999999999999999999987
Q ss_pred ---------------------------------------------CCCCCcchhhccccc-ccccCcccCCccchHHHHH
Q 027255 141 ---------------------------------------------DLGGIANPMFKGKGP-TMLQSNYAPAFPLKHQQKD 174 (226)
Q Consensus 141 ---------------------------------------------~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~kd 174 (226)
..+...++++..+.+ ++.+++|.++|+++++.||
T Consensus 162 g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD 241 (296)
T PRK15461 162 GGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKD 241 (296)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhh
Confidence 233445566665554 8899999999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255 175 MRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 222 (226)
Q Consensus 175 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 222 (226)
++++++++++.|+++|+.++++++|+.+.++|+|++|++++++++++.
T Consensus 242 ~~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 289 (296)
T PRK15461 242 LGIALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRVS 289 (296)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998763
No 5
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=5.3e-44 Score=348.95 Aligned_cols=222 Identities=22% Similarity=0.328 Sum_probs=214.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
.+|||||+|.||.+||+||+++||+|++|||++++.+++.+.|+..++|+.+++++||+||+|+|++.+++++++|++++
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~ 84 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGA 84 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcC--CcEEecCCCCChHhhccCcEEEEeccCC------------------
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKG--GHFLEAPVSGSKQPAETGQLVILSAGEK------------------ 140 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g--~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------ 140 (226)
.+.+.+|++|||+||++|..++++++.+.++| +.|+|+||+|++..|+.|++++|+||++
T Consensus 85 ~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~ 164 (1378)
T PLN02858 85 AKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLY 164 (1378)
T ss_pred HhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceE
Confidence 99999999999999999999999999999999 9999999999999999999999999998
Q ss_pred ------------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHH
Q 027255 141 ------------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 172 (226)
Q Consensus 141 ------------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (226)
+.+++.||+++.+.++++.++|.++|++++++
T Consensus 165 ~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~ 244 (1378)
T PLN02858 165 TFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLV 244 (1378)
T ss_pred EecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHH
Confidence 45678899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255 173 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 222 (226)
Q Consensus 173 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 222 (226)
||+++++++|++.|+++|+++.++++|+.+.+.|+|++|++++++++++.
T Consensus 245 KDl~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~~ 294 (1378)
T PLN02858 245 QNLGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEKV 294 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999763
No 6
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=100.00 E-value=2.5e-43 Score=297.44 Aligned_cols=216 Identities=29% Similarity=0.433 Sum_probs=200.1
Q ss_pred EEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccccccc
Q 027255 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQI 84 (226)
Q Consensus 5 vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l 84 (226)
|||+|.||.+||++|.++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|++.++++++++++++.+.+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 69999999999999999999999999999999999999998899999999999999999999889999998888888888
Q ss_pred CCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC------------------------
Q 027255 85 CPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK------------------------ 140 (226)
Q Consensus 85 ~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------------ 140 (226)
++++++||+||++|...+++++.+.++|+.|+|+||+|++..++.|++++|+||++
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g 160 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHG 160 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCC
Confidence 89999999999999999999999999999999999999999999999999999988
Q ss_pred -----------------------------------------CCCCCcchhhccccc-------ccccCcccCCccchHHH
Q 027255 141 -----------------------------------------DLGGIANPMFKGKGP-------TMLQSNYAPAFPLKHQQ 172 (226)
Q Consensus 141 -----------------------------------------~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~ 172 (226)
..+.+.++++..+.+ .+.+++|.++|++++++
T Consensus 161 ~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 240 (288)
T TIGR01692 161 AGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALML 240 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHH
Confidence 334555666655443 34679999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHH
Q 027255 173 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVK 220 (226)
Q Consensus 173 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 220 (226)
||++++.+++++.|+++|+.+++.++|+.+.++|+|++|+++++++++
T Consensus 241 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 288 (288)
T TIGR01692 241 KDLGLAQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288 (288)
T ss_pred hhHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHhC
Confidence 999999999999999999999999999999999999999999999763
No 7
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=100.00 E-value=1.1e-41 Score=287.87 Aligned_cols=221 Identities=32% Similarity=0.544 Sum_probs=207.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~ 81 (226)
||||||+|.||.+||++|+++||+|++|||++++.+.+.+.|...+.++.++++++|+||+|+|++.+++.++++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 69999999999999999999999999999999999999999998888999999999999999999889999987766677
Q ss_pred cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC---------------------
Q 027255 82 EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK--------------------- 140 (226)
Q Consensus 82 ~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~--------------------- 140 (226)
+.++++++|||+||+.|.+.+++.+.++++|++|+|+|++|++..+..|++.+|+||++
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g 160 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVG 160 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeC
Confidence 77889999999999999999999999999999999999999999999999999999987
Q ss_pred --------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHHH
Q 027255 141 --------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDMR 176 (226)
Q Consensus 141 --------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~ 176 (226)
..+...+++++.+.+++.+++|.++|+++++.||++
T Consensus 161 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~ 240 (291)
T TIGR01505 161 GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLN 240 (291)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHH
Confidence 234557788888888999999999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255 177 LALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 222 (226)
Q Consensus 177 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 222 (226)
++++++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++.
T Consensus 241 ~~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 241 LALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred HHHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999764
No 8
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=100.00 E-value=1.7e-41 Score=287.35 Aligned_cols=222 Identities=33% Similarity=0.567 Sum_probs=207.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|+|+|||+|.||.+||++|+++|++|++|||++++.+.+.+.|+..+.+++++++++|+||+|+|++.+++.++++.+++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 68999999999999999999999999999999999999998898888999999999999999999989999998776678
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC--------------------
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK-------------------- 140 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~-------------------- 140 (226)
.+.++++++|||+||+.|...+++.+.+.++|++|+|+||+|+++.+..|++.+|+||++
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~ 162 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHT 162 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEe
Confidence 888889999999999999999999999999999999999999999999999999999986
Q ss_pred ---------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHHHHH
Q 027255 141 ---------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQKDM 175 (226)
Q Consensus 141 ---------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~ 175 (226)
..+...+++++.+.+++.+++|.++|+++++.||+
T Consensus 163 g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl 242 (296)
T PRK11559 163 GDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDL 242 (296)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHH
Confidence 23455677788888889999999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255 176 RLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 222 (226)
Q Consensus 176 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 222 (226)
+++++++++.|+++|+++.++++|+.+.+.|+|++|++++++++++.
T Consensus 243 ~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 243 ANALDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999764
No 9
>PLN02858 fructose-bisphosphate aldolase
Probab=100.00 E-value=2.7e-41 Score=329.99 Aligned_cols=222 Identities=28% Similarity=0.448 Sum_probs=211.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||.+||++|+++||+|++|||++++.+.+...|+..+.++.+++++||+||+|+|++.+++++++++.++
T Consensus 325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~ 404 (1378)
T PLN02858 325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGA 404 (1378)
T ss_pred CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhH
Confidence 47999999999999999999999999999999999999999998889999999999999999999999999999988888
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHh--cCCcEEecCCCCChHhhccCcEEEEeccCC------------------
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITS--KGGHFLEAPVSGSKQPAETGQLVILSAGEK------------------ 140 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~--~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~------------------ 140 (226)
.+.+.+|++|||+||++|..++++++.+.+ +|+.|+|+||+|++..++.|++++|+||++
T Consensus 405 ~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~ 484 (1378)
T PLN02858 405 VSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLY 484 (1378)
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEE
Confidence 888899999999999999999999999999 899999999999999999999999999997
Q ss_pred ------------------------------------------------CCCCCcchhhcccccccccCcccCCccchHHH
Q 027255 141 ------------------------------------------------DLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ 172 (226)
Q Consensus 141 ------------------------------------------------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (226)
..+++.||+++.+.+++++++|.++|+++++.
T Consensus 485 ~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~ 564 (1378)
T PLN02858 485 VIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFV 564 (1378)
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHH
Confidence 34567788899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHhh
Q 027255 173 KDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKDL 222 (226)
Q Consensus 173 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 222 (226)
||++++++++++.|+|+|++.+++++|+.+.++|+|++|++++++++++.
T Consensus 565 KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~~ 614 (1378)
T PLN02858 565 KDLGIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYETL 614 (1378)
T ss_pred HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999763
No 10
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=100.00 E-value=5.9e-37 Score=272.66 Aligned_cols=201 Identities=21% Similarity=0.309 Sum_probs=179.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCc---ccCCHHHHhhh---CCeEEEecCCHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIKK---CTITIGMLADPAAA 70 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~~~~~~---advvi~~~p~~~~~ 70 (226)
++|||||+|.||.+||+||+++||+|++|||++++++.+.+. |+. .+.+++++++. +|+||+|+|+++++
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV 86 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPV 86 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHH
Confidence 479999999999999999999999999999999999998764 544 67899999986 99999999999999
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC----------
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK---------- 140 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~---------- 140 (226)
++++ +++++.+.+|++|||+||+.|.+++++++.++++|++|+|+||+|++.+|+.|+ ++|+||++
T Consensus 87 ~~Vi---~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL 162 (493)
T PLN02350 87 DQTI---KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDIL 162 (493)
T ss_pred HHHH---HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHH
Confidence 9999 788899999999999999999999999999999999999999999999999999 89999997
Q ss_pred -----------------------------------------------------------------CCCCCcchhhccccc
Q 027255 141 -----------------------------------------------------------------DLGGIANPMFKGKGP 155 (226)
Q Consensus 141 -----------------------------------------------------------------~~~~~~s~~~~~~~~ 155 (226)
+.+...|++++...+
T Consensus 163 ~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~ 242 (493)
T PLN02350 163 EKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITAD 242 (493)
T ss_pred HHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHH
Confidence 233455666666667
Q ss_pred ccccCc-ccCCccchHHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHHHHc
Q 027255 156 TMLQSN-YAPAFPLKHQQKDMR------LALALGDENAVSMPI-AAAANEAFKKARSL 205 (226)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~~ 205 (226)
.+..++ |.++|.++++.||++ .+.+.|.++|+|+|+ .+++...|......
T Consensus 243 ~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k~ 300 (493)
T PLN02350 243 IFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLKE 300 (493)
T ss_pred HHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccHH
Confidence 677664 888999999999999 899999999999999 88888887765543
No 11
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=7.1e-37 Score=259.38 Aligned_cols=215 Identities=20% Similarity=0.239 Sum_probs=192.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~ 77 (226)
|+|||||+|.||.+||++|.++|++|++|||++++.+.+.+.|+..+.++++++++ +|+||+|+|++.++++++
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~--- 77 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI--- 77 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH---
Confidence 79999999999999999999999999999999999999988899999999999876 599999999988999998
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------------
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK----------------- 140 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~----------------- 140 (226)
+++.+.+++|++|||+||+.|...+++++.+.++|+.|+|+||+|++..++.|+ ++|+||++
T Consensus 78 ~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (299)
T PRK12490 78 KDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEG 156 (299)
T ss_pred HHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcC
Confidence 678888889999999999999999999999999999999999999999999998 79999997
Q ss_pred -----------------------------------------------------CC-CCCcchhhcccccccccCcccCCc
Q 027255 141 -----------------------------------------------------DL-GGIANPMFKGKGPTMLQSNYAPAF 166 (226)
Q Consensus 141 -----------------------------------------------------~~-~~~~s~~~~~~~~~~~~~~~~~~~ 166 (226)
+. +...|++++.+.+.+..+++ .|
T Consensus 157 ~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~--~~ 234 (299)
T PRK12490 157 PGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPK--LA 234 (299)
T ss_pred CcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCC--hh
Confidence 11 12455666666666665543 36
Q ss_pred cchHHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHcCCCCCChHHHHHHHHh
Q 027255 167 PLKHQQKDM---RLALALGDENAVSMPIAAAAN-EAFKKARSLGLGDNDFSAVFEVVKD 221 (226)
Q Consensus 167 ~~~~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~~ 221 (226)
.++.+.||+ +++++.+++.|+|+|++..+. .+|....+.|.|..|++++.+++..
T Consensus 235 ~l~~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~~ 293 (299)
T PRK12490 235 GIKGYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFGG 293 (299)
T ss_pred hhhHHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhCC
Confidence 789999998 899999999999999999995 9999999999999999999998754
No 12
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=100.00 E-value=4.9e-36 Score=233.05 Aligned_cols=151 Identities=37% Similarity=0.644 Sum_probs=132.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|||||||+|.||++||++|.++||+|++|||++++.+++.+.|++.+.|+.|+++++|+||+|+|+++++++++++++ +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i 80 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-I 80 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-H
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-H
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999997766 9
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhcc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG 152 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~ 152 (226)
.+.+.+|++|||+||++|...+++++.+.++|+.|+|+||+|+++.+++|++++|+||++..-....++++.
T Consensus 81 ~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~ 152 (163)
T PF03446_consen 81 LAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEA 152 (163)
T ss_dssp GGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHH
T ss_pred hhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999996433333444443
No 13
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=100.00 E-value=5.7e-34 Score=241.86 Aligned_cols=215 Identities=23% Similarity=0.332 Sum_probs=182.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~ 77 (226)
|+|||||+|.||.+||++|+++||+|++|||++++.+.+.+.|+..+.+++++++. +|+||+|+|++.++++++
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~--- 77 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI--- 77 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH---
Confidence 89999999999999999999999999999999999999999999999999999876 699999999987899998
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------------
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK----------------- 140 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~----------------- 140 (226)
+++.+.+++++++||+||+.|..++++++.++++|+.|+|+||+|++..++.|. ++|+||++
T Consensus 78 ~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~ 156 (301)
T PRK09599 78 DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRA 156 (301)
T ss_pred HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccc
Confidence 677888889999999999999999999999999999999999999999999995 89999997
Q ss_pred ------------------------------------------------------CCCC-CcchhhcccccccccCcccCC
Q 027255 141 ------------------------------------------------------DLGG-IANPMFKGKGPTMLQSNYAPA 165 (226)
Q Consensus 141 ------------------------------------------------------~~~~-~~s~~~~~~~~~~~~~~~~~~ 165 (226)
+.+. ..|++++.+.+.+.. + +.
T Consensus 157 ~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~-~--~~ 233 (301)
T PRK09599 157 EDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAE-D--PK 233 (301)
T ss_pred cCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhc-C--CC
Confidence 1111 234444444444422 2 22
Q ss_pred cc-chHHHHH---HHHHHHHHhhcCCCchHHHHHHH-HHHHHHHcCCCCCChHHHHHHHHhh
Q 027255 166 FP-LKHQQKD---MRLALALGDENAVSMPIAAAANE-AFKKARSLGLGDNDFSAVFEVVKDL 222 (226)
Q Consensus 166 ~~-~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~-~~~~a~~~g~g~~d~~~~~~~~~~~ 222 (226)
|. +..+.|| ++++.+.|.+.|+|+|++.++.. .|....+.|++..|.+++.+++...
T Consensus 234 ~~~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg~h 295 (301)
T PRK09599 234 LDEISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFGGH 295 (301)
T ss_pred HHHHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCC
Confidence 32 4445666 59999999999999999999555 5999999999999999999987543
No 14
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.97 E-value=3.3e-30 Score=218.49 Aligned_cols=192 Identities=18% Similarity=0.240 Sum_probs=164.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh---hCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK---KCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~---~advvi~~~p~~~~~~~v~~~~ 77 (226)
|+|||||+|.||.+||++|.++||+|.+|||++++.+.+.+.|+..+.+++++++ ++|+||+|+|++ .+++++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~--- 76 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL--- 76 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH---
Confidence 8999999999999999999999999999999999999999988877788877654 579999999997 899999
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC-----------------
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK----------------- 140 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~----------------- 140 (226)
+++.+.+++|++|||+||+.|..+.++.+.+.++|++|+|+||+|++.+++.| +++|+||++
T Consensus 77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~ 155 (298)
T TIGR00872 77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEE 155 (298)
T ss_pred HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcC
Confidence 78888899999999999999999999999999999999999999999999999 589999987
Q ss_pred -----------------------------------------------------CCCC-CcchhhcccccccccCcccCCc
Q 027255 141 -----------------------------------------------------DLGG-IANPMFKGKGPTMLQSNYAPAF 166 (226)
Q Consensus 141 -----------------------------------------------------~~~~-~~s~~~~~~~~~~~~~~~~~~~ 166 (226)
+.+. ..|++++...+.+..+++.+.|
T Consensus 156 ~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~ 235 (298)
T TIGR00872 156 QGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEF 235 (298)
T ss_pred CCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHH
Confidence 1122 2445555554445555555566
Q ss_pred cch-HHHHHHHHHHHHHhhcCCCchHHHHHHH
Q 027255 167 PLK-HQQKDMRLALALGDENAVSMPIAAAANE 197 (226)
Q Consensus 167 ~~~-~~~kd~~~~~~~a~~~g~~~p~~~~~~~ 197 (226)
... ...+|.+.+...+.+.|+|+|.+.++..
T Consensus 236 ~~~~~~~~~~r~~v~~a~~~g~p~P~~~~al~ 267 (298)
T TIGR00872 236 SGRVSDSGEGRWTVIAAIDLGVPAPVIATSLQ 267 (298)
T ss_pred HHHHHhhccHHHHHHHHHHhCCCHHHHHHHHH
Confidence 544 4678889999999999999999999653
No 15
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.97 E-value=1.6e-29 Score=224.71 Aligned_cols=152 Identities=22% Similarity=0.342 Sum_probs=137.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhh---hCCeEEEecCCHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIK---KCTITIGMLADPAAAL 71 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~---~advvi~~~p~~~~~~ 71 (226)
++|||||+|.||++||++|+++||+|++|||++++++.+.+. | +..+.+++++++ ++|+||+|+|+++.++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 479999999999999999999999999999999999998764 5 446889999987 4899999999999999
Q ss_pred HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhc
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFK 151 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~ 151 (226)
+++ +++.+.+.+|++|||++|+.+..+.+..+.+.++|++|+|+||+|++.+|+.|. ++|+||++..-....|+++
T Consensus 82 ~vi---~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~ 157 (470)
T PTZ00142 82 ETI---DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILE 157 (470)
T ss_pred HHH---HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHH
Confidence 999 788999999999999999999999999999999999999999999999999999 8999999866555667776
Q ss_pred ccccc
Q 027255 152 GKGPT 156 (226)
Q Consensus 152 ~~~~~ 156 (226)
..+.+
T Consensus 158 ~ia~~ 162 (470)
T PTZ00142 158 KCSAK 162 (470)
T ss_pred HHhhh
Confidence 66544
No 16
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.96 E-value=2.3e-28 Score=217.40 Aligned_cols=152 Identities=25% Similarity=0.406 Sum_probs=136.3
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhh---hCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~---~advvi~~~p~~~~~~~v 73 (226)
+|||||+|.||.+||++|+++||+|++|||++++.+.+.+. ++..+.+++++++ ++|+||+|+|++..++++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V 80 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV 80 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence 48999999999999999999999999999999999999876 2567788888875 589999999999999999
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccc
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGK 153 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~ 153 (226)
+ +++.+.+.+|++|||+||+.|..+.+..+.+.++|++|+|+||+|++.+|+.|. ++|+||++..-....|+++..
T Consensus 81 i---~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~i 156 (467)
T TIGR00873 81 I---NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKI 156 (467)
T ss_pred H---HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHH
Confidence 9 788899999999999999999999999999999999999999999999999998 899999986655666777766
Q ss_pred cccc
Q 027255 154 GPTM 157 (226)
Q Consensus 154 ~~~~ 157 (226)
+.++
T Consensus 157 a~~~ 160 (467)
T TIGR00873 157 AAKV 160 (467)
T ss_pred hhhc
Confidence 6543
No 17
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=99.95 E-value=8.9e-27 Score=206.53 Aligned_cols=143 Identities=25% Similarity=0.391 Sum_probs=132.2
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhccccccc
Q 027255 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDKGGVLE 82 (226)
Q Consensus 11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~~~l~~ 82 (226)
||.+||+||+++||+|.+|||++++.+.+.+. |+..+.|+++++++ +|+||+|+|++.++++++ +++++
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi---~~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI---EQLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH---HHHHh
Confidence 89999999999999999999999999999874 58889999999985 899999999999999999 78999
Q ss_pred ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccccccc
Q 027255 83 QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTM 157 (226)
Q Consensus 83 ~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~~ 157 (226)
.+.+|.+|||+||+.|..+++.++.++++|++|+|+||+|++.+|+.|. ++|+||++..-....|+++..+.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~ 151 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKV 151 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999999998 8999999876666777777776654
No 18
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.94 E-value=1.9e-26 Score=203.56 Aligned_cols=199 Identities=18% Similarity=0.152 Sum_probs=159.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~~~~~~advv 60 (226)
|||+|||+|.||.+||.+|+++||+|++||+++++++.+.+ .| ++.+.++.++++++|+|
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv 80 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI 80 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence 89999999999999999999999999999999999988764 23 56677888999999999
Q ss_pred EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCc-EEecCCCCChHhhc
Q 027255 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH-FLEAPVSGSKQPAE 128 (226)
Q Consensus 61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~-~ld~pv~g~~~~a~ 128 (226)
|+|+|++. .+..++ +++.+.++++++||++||+.|.+.+++.+.+.++ |.. ++|.|+.++|..+.
T Consensus 81 ii~vpt~~~~~~~~d~~~v~~~~---~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~ 157 (411)
T TIGR03026 81 IICVPTPLKEDGSPDLSYVESAA---ETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLR 157 (411)
T ss_pred EEEeCCCCCCCCCcChHHHHHHH---HHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCC
Confidence 99999864 366666 6777888899999999999999999998666554 554 67899999999999
Q ss_pred cCcE--------EEEeccCC-----------CCC------------------------------------------CCcc
Q 027255 129 TGQL--------VILSAGEK-----------DLG------------------------------------------GIAN 147 (226)
Q Consensus 129 ~g~~--------~~~~gg~~-----------~~~------------------------------------------~~~s 147 (226)
.|++ .+++|+++ ..+ ....
T Consensus 158 ~G~~~~~~~~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~ 237 (411)
T TIGR03026 158 EGNAVHDLLNPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVY 237 (411)
T ss_pred CCChhhhhcCCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 9987 78998776 010 0000
Q ss_pred hhhc--ccccccccCcccCCc--cchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q 027255 148 PMFK--GKGPTMLQSNYAPAF--PLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKA 202 (226)
Q Consensus 148 ~~~~--~~~~~~~~~~~~~~~--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 202 (226)
.+.+ ...+++..+.|.|+| ...++.||++++++.++++|+++|+++++.++-+.-
T Consensus 238 ~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 238 EVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred HHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 0011 113566778888876 567799999999999999999999999998876543
No 19
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.93 E-value=1.7e-25 Score=192.17 Aligned_cols=206 Identities=16% Similarity=0.234 Sum_probs=167.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------C------CcccCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------G------ATVGGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g------~~~~~s~~~~~~~advvi~~~p~ 66 (226)
|||+|||+|.||++||.+|+++||+|++|+|++++.+.+... | +..+.+++++++++|+||+|+|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 799999999999999999999999999999999988888764 3 34567888988999999999998
Q ss_pred HHHHHHHhhcccccccccCCCcEEEecCC-CCHHH--HHHHHHHHHh---cCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255 67 PAAALSVVFDKGGVLEQICPGKGYIDMST-VDHET--SIKISRAITS---KGGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (226)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~--~~~l~~~~~~---~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~ 140 (226)
. ++++++ +.++++.++|++++ ..|.. .+.+++.+.+ +++.++++|..........+++++++|++.
T Consensus 85 ~-~~~~v~-------~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~ 156 (328)
T PRK14618 85 K-ALRETL-------AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEP 156 (328)
T ss_pred H-HHHHHH-------HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCH
Confidence 5 677776 44567889999998 46554 6677787766 678889999888877777789999999986
Q ss_pred --------------------------------------------------------------------------------
Q 027255 141 -------------------------------------------------------------------------------- 140 (226)
Q Consensus 141 -------------------------------------------------------------------------------- 140 (226)
T Consensus 157 ~~~~~v~~ll~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~ 236 (328)
T PRK14618 157 GLARRVQAAFSGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYG 236 (328)
T ss_pred HHHHHHHHHhCCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhc
Confidence
Q ss_pred --CC----CCCcchhhccc--ccccccC---c-ccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCC
Q 027255 141 --DL----GGIANPMFKGK--GPTMLQS---N-YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLG 208 (226)
Q Consensus 141 --~~----~~~~s~~~~~~--~~~~~~~---~-~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g 208 (226)
.. ++..|+..+++ ++++..+ + +.++|.+.++.||+++++++++++++++|+++.+++++ ++
T Consensus 237 ~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~ 309 (328)
T PRK14618 237 LSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------RG 309 (328)
T ss_pred CcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hC
Confidence 01 13345556666 3367777 4 67789999999999999999999999999999999988 46
Q ss_pred CCChHHHHHHHHh
Q 027255 209 DNDFSAVFEVVKD 221 (226)
Q Consensus 209 ~~d~~~~~~~~~~ 221 (226)
+.|..++++.+-+
T Consensus 310 ~~~~~~~~~~~~~ 322 (328)
T PRK14618 310 GWDPLAGLRSLMG 322 (328)
T ss_pred CCCHHHHHHHHhc
Confidence 6677776666543
No 20
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.93 E-value=5e-25 Score=175.22 Aligned_cols=204 Identities=24% Similarity=0.320 Sum_probs=169.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhh---CCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKK---CTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~---advvi~~~p~~~~~~~v~~~~ 77 (226)
|+||+||+|.||..|.++|.+.||+|++||+|++..+++...|++.++|+.+.++. ..+|++++|..+.+..++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi--- 77 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI--- 77 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH---
Confidence 89999999999999999999999999999999999999999999999999998764 689999999988899999
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccccccc
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPTM 157 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~~ 157 (226)
+.+.+.|.+|.+|||-.++...++.+.++.++++|++|+|+..+|+.-+++.|-. +|+||++.......|+|+...+.-
T Consensus 78 ~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~-lMiGG~~~a~~~~~pif~~lA~ge 156 (300)
T COG1023 78 DDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYC-LMIGGDEEAVERLEPIFKALAPGE 156 (300)
T ss_pred HHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCce-EEecCcHHHHHHHHHHHHhhCcCc
Confidence 8899999999999999999999999999999999999999999999999999975 999999866666677777766531
Q ss_pred ----ccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255 158 ----LQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 221 (226)
Q Consensus 158 ----~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 221 (226)
.-|.-..+--+++.+.-+++.+..|-..|+ +... ...=+.|+.++.++|+.
T Consensus 157 ~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGf------------elL~-~s~fD~D~~~VA~vW~h 211 (300)
T COG1023 157 DGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGF------------ELLK-NSPFDYDLEAVAEVWNH 211 (300)
T ss_pred CccccccCCCcchhHHHHhccHHHHHHHHHHHHH------------HHHH-hCCCCCCHHHHHHHHhC
Confidence 122222344578888888877665544443 2222 22356778888777764
No 21
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.90 E-value=2.6e-23 Score=178.07 Aligned_cols=136 Identities=19% Similarity=0.297 Sum_probs=113.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~~~~~~advvi~~~p~ 66 (226)
|||+|||+|.||..||.+|+++||+|++|+|++++.+.+... ++..+.+++++++++|+||+|+|+
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 699999999999999999999999999999999999888775 355567888888999999999988
Q ss_pred HHHHHHHhhcccccccccCCCcEEEecC-CCCHHHHHHHHHHHHhc-----CCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255 67 PAAALSVVFDKGGVLEQICPGKGYIDMS-TVDHETSIKISRAITSK-----GGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (226)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~s-t~~~~~~~~l~~~~~~~-----g~~~ld~pv~g~~~~a~~g~~~~~~gg~~ 140 (226)
.++++++ .++.+.+.+++++|+++ ++.+...+.+++.+.+. ...++++|.++....+..+++.++.+++.
T Consensus 82 -~~~~~v~---~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~ 157 (325)
T PRK00094 82 -QALREVL---KQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDE 157 (325)
T ss_pred -HHHHHHH---HHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCH
Confidence 6788888 67778888899999988 67776666677776664 44578888887776777778878877765
No 22
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.90 E-value=1.6e-23 Score=178.41 Aligned_cols=194 Identities=18% Similarity=0.301 Sum_probs=146.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|||+|||+|.||++||++|.++||+|++|+|++. .+++++++++|+||+|+|+ .++++++ +++
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~---~~l 67 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVA---EQV 67 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHH---HHH
Confidence 7999999999999999999999999999999864 5788899999999999999 5888888 666
Q ss_pred cc-ccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCC--CChHhh-----ccCcEEEEeccCC-----------
Q 027255 81 LE-QICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVS--GSKQPA-----ETGQLVILSAGEK----------- 140 (226)
Q Consensus 81 ~~-~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~--g~~~~a-----~~g~~~~~~gg~~----------- 140 (226)
.+ .+.+++++|++++ ..|...+.+++.+..+ |.+.|+. ++|..+ +.+++++++|++.
T Consensus 68 ~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~ 144 (308)
T PRK14619 68 QALNLPPETIIVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFS 144 (308)
T ss_pred HHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhC
Confidence 55 3678899999987 6777767666666543 4566763 343332 3368889999887
Q ss_pred ----------C------------------------------------------------CCCCcchhhc--------ccc
Q 027255 141 ----------D------------------------------------------------LGGIANPMFK--------GKG 154 (226)
Q Consensus 141 ----------~------------------------------------------------~~~~~s~~~~--------~~~ 154 (226)
+ .|.....+++ ...
T Consensus 145 ~~~~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~ 224 (308)
T PRK14619 145 SERFRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATC 224 (308)
T ss_pred CCcEEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheee
Confidence 0 0000000111 012
Q ss_pred cccccCcccCCccchHH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 027255 155 PTMLQSNYAPAFPLKHQ----------------QKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 218 (226)
Q Consensus 155 ~~~~~~~~~~~~~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~ 218 (226)
+.+.+|+|.++|.+..+ .||++++++++++.|+++|++.+++++| +++.+...+++.
T Consensus 225 ~~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~-------~~~~~~~~~~~~ 297 (308)
T PRK14619 225 TSPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLL-------QGEITPQQALEE 297 (308)
T ss_pred cCCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHH-------cCCCCHHHHHHH
Confidence 35678888888877777 9999999999999999999999999999 466677776666
Q ss_pred HHh
Q 027255 219 VKD 221 (226)
Q Consensus 219 ~~~ 221 (226)
+-+
T Consensus 298 l~~ 300 (308)
T PRK14619 298 LME 300 (308)
T ss_pred HHc
Confidence 543
No 23
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=99.89 E-value=1.7e-22 Score=178.44 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=143.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc----------------ccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----------------VGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~----------------~~~s~~~~~~~advvi~~~ 64 (226)
|||+|||+|.||.+||.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|+
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~V 84 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITV 84 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEc
Confidence 799999999999999999877 699999999999999998 4432 3445556789999999999
Q ss_pred CCH------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEe--------cCCCCChHhhc
Q 027255 65 ADP------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE--------APVSGSKQPAE 128 (226)
Q Consensus 65 p~~------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld--------~pv~g~~~~a~ 128 (226)
|++ ..++.++.+.+++.+.+++|++||++||+.|.+++++.+...++ |..+.| .|+.+|.....
T Consensus 85 ptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~ 164 (425)
T PRK15182 85 PTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHR 164 (425)
T ss_pred CCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCccccc
Confidence 988 34566666557888999999999999999999999765554443 766666 45666666666
Q ss_pred cCcEEEEeccCCC---------------CCC---------------------------------------Ccchhhcccc
Q 027255 129 TGQLVILSAGEKD---------------LGG---------------------------------------IANPMFKGKG 154 (226)
Q Consensus 129 ~g~~~~~~gg~~~---------------~~~---------------------------------------~~s~~~~~~~ 154 (226)
..++..+++|... .+. ....+.+..+
T Consensus 165 ~~~~~riv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~ 244 (425)
T PRK15182 165 LTNIKKITSGSTAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAG 244 (425)
T ss_pred ccCCCeEEECCCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 6666666666541 010 0000000000
Q ss_pred cccccCcccCC-ccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q 027255 155 PTMLQSNYAPA-FPLKHQQKDMRLALALGDENAVSMPIAAAANEAFK 200 (226)
Q Consensus 155 ~~~~~~~~~~~-~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 200 (226)
....-..+.|+ |.=.++-||..+....+++.|.++++.++++++-+
T Consensus 245 ~~~~~~~~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~ 291 (425)
T PRK15182 245 SKWNFLPFRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLND 291 (425)
T ss_pred CCCCcccCCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 01011123455 66678889999999999999999999998887644
No 24
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.88 E-value=1.2e-21 Score=167.00 Aligned_cols=208 Identities=15% Similarity=0.154 Sum_probs=159.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~ 56 (226)
|+|+|||+|.||.+||.+|+++||+|++|||++++.+.. .+.| +..+.++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 589999999999999999999999999999999877653 3344 2577889999999
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEe
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~ 136 (226)
+|+|+.|+|++..++..+++ .+.+.. ++.+++.+||. +....++++.+...+..+++.|+.+.... .++.++
T Consensus 83 ad~Vi~avpe~~~~k~~~~~--~l~~~~-~~~~ii~ssts-~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv 154 (308)
T PRK06129 83 ADYVQESAPENLELKRALFA--ELDALA-PPHAILASSTS-ALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVV 154 (308)
T ss_pred CCEEEECCcCCHHHHHHHHH--HHHHhC-CCcceEEEeCC-CCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEe
Confidence 99999999997777666653 344444 55555554444 44567788888777889999999864221 366788
Q ss_pred ccCC-------------------------------------------------------------CCCCCcchhhccccc
Q 027255 137 AGEK-------------------------------------------------------------DLGGIANPMFKGKGP 155 (226)
Q Consensus 137 gg~~-------------------------------------------------------------~~~~~~s~~~~~~~~ 155 (226)
+|+. ..+.+.+|.+ .+|
T Consensus 155 ~~~~t~~~~~~~~~~~~~~lG~~~v~v~~~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp 232 (308)
T PRK06129 155 PAPWTAPATLARAEALYRAAGQSPVRLRREIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGP 232 (308)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEecCCCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCH
Confidence 7443 1223333333 577
Q ss_pred ccccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 027255 156 TMLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEV 218 (226)
Q Consensus 156 ~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~ 218 (226)
.++.+.|.++|...++.||..++.+++++.+.|.|++....+.....++.-++..++..+.++
T Consensus 233 ~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 233 FETIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred HHHHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 777778888999999999999999999999999999987777777777777888889888764
No 25
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.84 E-value=5.3e-20 Score=154.68 Aligned_cols=136 Identities=18% Similarity=0.254 Sum_probs=117.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------CCcccCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------GATVGGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~~~~~~advvi~~~p~ 66 (226)
|+|+|||.|+||+++|..|+++||+|++|.|+++..+++... ++.+++++.++++++|+|++.+|+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs 81 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS 81 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence 689999999999999999999999999999999999988764 145688999999999999999999
Q ss_pred HHHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhc----CCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (226)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~----g~~~ld~pv~g~~~~a~~g~~~~~~gg~~ 140 (226)
+.+++++ .++.+.++++.++|.+++. .+.+.+.+.+.+.+. -+.+|.+|-+..+.....++.+++++-|.
T Consensus 82 -~~~r~v~---~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~ 156 (329)
T COG0240 82 -QALREVL---RQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQ 156 (329)
T ss_pred -HHHHHHH---HHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCH
Confidence 7899999 7787788899999999984 666666666666654 36799999999999999999877777666
No 26
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=99.84 E-value=5.1e-20 Score=160.96 Aligned_cols=128 Identities=17% Similarity=0.153 Sum_probs=108.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH----------------CCCcc--cCCHHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA----------------HGATV--GGSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----------------~g~~~--~~s~~~~~~~advvi~ 62 (226)
|||+|||+|.||.+||..|+ .||+|++||+++++++.+.+ .+.+. ..++.++++++|+||+
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii 79 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII 79 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence 89999999999999997776 59999999999999998876 23334 3346788899999999
Q ss_pred ecCCH----------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcE
Q 027255 63 MLADP----------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQL 132 (226)
Q Consensus 63 ~~p~~----------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~ 132 (226)
|+|++ ..+++++ +++.+ +++|++||+.||+.|.+++++.+.+.+.++.| +|..+..|++
T Consensus 80 ~Vpt~~~~k~~~~dl~~v~~v~---~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a 148 (388)
T PRK15057 80 ATPTDYDPKTNYFNTSSVESVI---KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKA 148 (388)
T ss_pred eCCCCCccCCCCcChHHHHHHH---HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcc
Confidence 99987 6778887 67766 68999999999999999999999887766655 6777888988
Q ss_pred --------EEEeccCC
Q 027255 133 --------VILSAGEK 140 (226)
Q Consensus 133 --------~~~~gg~~ 140 (226)
.+++|++.
T Consensus 149 ~~d~~~p~rvv~G~~~ 164 (388)
T PRK15057 149 LYDNLHPSRIVIGERS 164 (388)
T ss_pred cccccCCCEEEEEcCc
Confidence 89999886
No 27
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.84 E-value=7.5e-20 Score=161.53 Aligned_cols=137 Identities=12% Similarity=0.060 Sum_probs=110.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHH---------------hhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEV---------------IKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~~~---------------~~~advvi~~~ 64 (226)
|||+|||+|.||.+||.+|+++||+|++||+++++++.+....... ...++++ .+++|+||+|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 6899999999999999999999999999999999999865332221 1112222 24799999999
Q ss_pred CCH---------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC--------------cEEecC--
Q 027255 65 ADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--------------HFLEAP-- 119 (226)
Q Consensus 65 p~~---------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~--------------~~ld~p-- 119 (226)
|++ ..+..++ +++.+.+++|++||++||+.|.+++++...+.+++. .++++|
T Consensus 84 ptp~~~~~~~dl~~v~~~~---~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~ 160 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAA---KSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPER 160 (415)
T ss_pred CCCCCCCCCcChHHHHHHH---HHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCc
Confidence 997 5777777 778888999999999999999999999998877533 357888
Q ss_pred CCCChHhhccCcEEEEecc-CC
Q 027255 120 VSGSKQPAETGQLVILSAG-EK 140 (226)
Q Consensus 120 v~g~~~~a~~g~~~~~~gg-~~ 140 (226)
+..|...+..+++..++|| ++
T Consensus 161 ~~~G~~~~~~~~~~~vvgG~~~ 182 (415)
T PRK11064 161 VLPGQVMVELIKNDRVIGGMTP 182 (415)
T ss_pred cCCCChhhhhcCCCEEEEeCCH
Confidence 7777777777888899999 44
No 28
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2e-20 Score=158.48 Aligned_cols=205 Identities=24% Similarity=0.384 Sum_probs=154.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhh---hCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIK---KCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~---~advvi~~~p~~~~~~~v 73 (226)
.||+||+|.||+.+|.|+.++||+|.+|||++++.+++.+. .+..+.|++|.+. ....|++++.....+..+
T Consensus 5 ~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~ 84 (473)
T COG0362 5 DIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAV 84 (473)
T ss_pred ceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHH
Confidence 59999999999999999999999999999999999998765 3567788888764 578899999877778888
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccc
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGK 153 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~ 153 (226)
+ +++++.|.+|.++||-.+....++.+-.+.+.++|+.|+...|+||+.+|..|.. +|.||++.......|+++..
T Consensus 85 I---~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GPS-iMpGG~~eay~~v~pil~~I 160 (473)
T COG0362 85 I---EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGPS-IMPGGQKEAYELVAPILTKI 160 (473)
T ss_pred H---HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCCC-cCCCCCHHHHHHHHHHHHHH
Confidence 8 8899999999999999988777777778889999999999999999999999985 99999987666666666654
Q ss_pred ccccccCc-------ccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255 154 GPTMLQSN-------YAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 221 (226)
Q Consensus 154 ~~~~~~~~-------~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 221 (226)
..+.-.+. -..+--+++.+.-+++. +|.+...++.+++.. .|+..++.+.+++-|.+
T Consensus 161 aAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYg---------DMQlIaE~Y~ilk~~--lgls~~ei~~vF~~WN~ 224 (473)
T COG0362 161 AAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYG---------DMQLIAEAYDILKDG--LGLSAEEIAEVFEEWNK 224 (473)
T ss_pred HhhcCCCCceeeECCCCCCceeeeeecCchHH---------HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHhcc
Confidence 43322111 11122344444444432 234444455554432 35555666666555544
No 29
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.77 E-value=1.8e-18 Score=145.40 Aligned_cols=127 Identities=20% Similarity=0.238 Sum_probs=102.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCch-hHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLS-KCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~~-~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~ 74 (226)
|||+|||+|+||.+|+++|.++| ++|++|||+++ +.+.+... |+..+.++.++++++|+||+|+|+ ..+.+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~vl 82 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAEAL 82 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHHHH
Confidence 79999999999999999999998 78999999864 66777654 888888999999999999999987 6777777
Q ss_pred hcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCC---hHhhccCcEEEEeccCC
Q 027255 75 FDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGS---KQPAETGQLVILSAGEK 140 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~---~~~a~~g~~~~~~gg~~ 140 (226)
.++.+.+.++++||++ ++++++..+++. .. ++||++. .+.+..+.++++++|+.
T Consensus 83 ---~~l~~~~~~~~liIs~~aGi~~~~l~~~~----~~-----~~~v~r~mPn~~~~~~~~~t~~~~~~~ 140 (279)
T PRK07679 83 ---IPFKEYIHNNQLIISLLAGVSTHSIRNLL----QK-----DVPIIRAMPNTSAAILKSATAISPSKH 140 (279)
T ss_pred ---HHHHhhcCCCCEEEEECCCCCHHHHHHHc----CC-----CCeEEEECCCHHHHHhcccEEEeeCCC
Confidence 6777777788999996 778887666643 12 3567766 44666677888988874
No 30
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.75 E-value=1.8e-17 Score=138.35 Aligned_cols=180 Identities=16% Similarity=0.218 Sum_probs=121.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC----eEEEE-cCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|||+|||+|+||.+|+++|.++|| +|++| ||++++.+.+.+.|+..+.+..++++++|+||+|+| ++++++++
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl- 78 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL- 78 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence 899999999999999999999998 89999 999999999988899999999999999999999996 47899998
Q ss_pred cccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEe-cCCCCChHhhccCcEEEEecc---CCCCCCCcchhh
Q 027255 76 DKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLE-APVSGSKQPAETGQLVILSAG---EKDLGGIANPMF 150 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld-~pv~g~~~~a~~g~~~~~~gg---~~~~~~~~s~~~ 150 (226)
.++.+.+.++++||++++ +.....+ +.+... .++. .|..+..... ..+.++.+ ++.......+++
T Consensus 79 --~~l~~~~~~~~~iIs~~~g~~~~~l~---~~~~~~--~vvr~mP~~~~~~~~---~~~~l~~~~~~~~~~~~~v~~l~ 148 (266)
T PLN02688 79 --TELRPLLSKDKLLVSVAAGITLADLQ---EWAGGR--RVVRVMPNTPCLVGE---AASVMSLGPAATADDRDLVATLF 148 (266)
T ss_pred --HHHHhhcCCCCEEEEecCCCcHHHHH---HHcCCC--CEEEECCCcHHHHhC---ceEEEEeCCCCCHHHHHHHHHHH
Confidence 667777788998887644 4444333 333221 5664 6766554433 33334433 222122233444
Q ss_pred ccccccc-c-cCccc-----CCccchHHHHHHHHHHHHHhhcCCCchHH
Q 027255 151 KGKGPTM-L-QSNYA-----PAFPLKHQQKDMRLALALGDENAVSMPIA 192 (226)
Q Consensus 151 ~~~~~~~-~-~~~~~-----~~~~~~~~~kd~~~~~~~a~~~g~~~p~~ 192 (226)
+..+.-. . ...++ .+.......--++.+.+.+.+.|++....
T Consensus 149 ~~~G~~~~~~e~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a 197 (266)
T PLN02688 149 GAVGKIWVVDEKLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVA 197 (266)
T ss_pred HhCCCEEEeCHHHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 4433311 1 11111 12222334455666777788889987654
No 31
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.74 E-value=1.1e-17 Score=141.28 Aligned_cols=130 Identities=16% Similarity=0.209 Sum_probs=103.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC------------------------CCcccCCHHHHhhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH------------------------GATVGGSPAEVIKK 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~------------------------g~~~~~s~~~~~~~ 56 (226)
.+|+|||+|.||..||.+|+++||+|++||+++++++++.+. +++.+.++.+++++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 479999999999999999999999999999999988875421 13457788899999
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEE-EecCCCCHHHHHHHHHHHH-hcCCcEEecCCCCChHhhccCcEEE
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGY-IDMSTVDHETSIKISRAIT-SKGGHFLEAPVSGSKQPAETGQLVI 134 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~iv-vd~st~~~~~~~~l~~~~~-~~g~~~ld~pv~g~~~~a~~g~~~~ 134 (226)
||+||.|+|++..++..+++ ++.+.+++++++ +++||..|....+..+... ..|++|+ +|+.++ .++.
T Consensus 82 aD~Vi~avpe~~~~k~~~~~--~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve 151 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFE--TADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVE 151 (288)
T ss_pred CCEEEEeccCCHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEE
Confidence 99999999998887777653 466778888866 7899999876554433221 1488888 898775 5899
Q ss_pred EeccCC
Q 027255 135 LSAGEK 140 (226)
Q Consensus 135 ~~gg~~ 140 (226)
|++|+.
T Consensus 152 ~v~g~~ 157 (288)
T PRK09260 152 LIRGLE 157 (288)
T ss_pred EeCCCC
Confidence 999954
No 32
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.74 E-value=1.6e-17 Score=149.90 Aligned_cols=182 Identities=19% Similarity=0.177 Sum_probs=130.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-------------------CC-CcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-------------------HG-ATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~~~~~~advv 60 (226)
|||+|||+|.||.+||.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999999998776532 12 67788999999999999
Q ss_pred EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (226)
Q Consensus 61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~ 140 (226)
+.|+|+..+++..+++ ++.+.++++ .+|++||+.+... .+.+.+...+..+++.|+... ..+.++.+++|+.
T Consensus 85 ieavpe~~~vk~~l~~--~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~ 156 (495)
T PRK07531 85 QESVPERLDLKRRVLA--EIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGK 156 (495)
T ss_pred EEcCcCCHHHHHHHHH--HHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCC
Confidence 9999998888887763 455556555 4677777766544 667777777889999998732 2447889999984
Q ss_pred C---CCCCcchhhcccccc-cccCcccCCccchHHHHH-HHHHHHHHhhcCCCch
Q 027255 141 D---LGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKD-MRLALALGDENAVSMP 190 (226)
Q Consensus 141 ~---~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd-~~~~~~~a~~~g~~~p 190 (226)
. .-....++++..+.. +.-+...++|-...+.-- +..++.++++.+++..
T Consensus 157 t~~e~~~~~~~~~~~lG~~~v~~~k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~ 211 (495)
T PRK07531 157 TSPETIRRAKEILREIGMKPVHIAKEIDAFVGDRLLEALWREALWLVKDGIATTE 211 (495)
T ss_pred CCHHHHHHHHHHHHHcCCEEEeecCCCcchhHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 2 112223444444322 222334567755555555 4777777777777643
No 33
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.74 E-value=3e-17 Score=137.21 Aligned_cols=104 Identities=15% Similarity=0.157 Sum_probs=94.2
Q ss_pred CeEEEEecChh--------------------HHHHHHHHHhCCCeEEEEcCCchhH-----HHHHHCCCcccCCHHHHhh
Q 027255 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSKC-----DELVAHGATVGGSPAEVIK 55 (226)
Q Consensus 1 m~IgvIG~G~m--------------------G~~~A~~l~~~G~~V~~~dr~~~~~-----~~l~~~g~~~~~s~~~~~~ 55 (226)
|||.|.|+|+- |.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa 80 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAK 80 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHh
Confidence 89999999974 8899999999999999999987655 4588889999999999999
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHH
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRA 107 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~ 107 (226)
++|+||+|+|+++++++++ .++.+.+++|++|||+||++|.....+-+.
T Consensus 81 ~ADVVIL~LPd~aaV~eVl---~GLaa~L~~GaIVID~STIsP~t~~~~~e~ 129 (341)
T TIGR01724 81 HGEIHVLFTPFGKGTFSIA---RTIIEHVPENAVICNTCTVSPVVLYYSLEK 129 (341)
T ss_pred CCCEEEEecCCHHHHHHHH---HHHHhcCCCCCEEEECCCCCHHHHHHHHHH
Confidence 9999999999999999998 678899999999999999999988777666
No 34
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.74 E-value=7.3e-17 Score=135.39 Aligned_cols=131 Identities=24% Similarity=0.415 Sum_probs=103.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
|||+|||+|.||..||+.|.++|+ +|++|||++++.+.+.+.|+. .+.+++++. ++|+||+|+|. ..+.+++
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~--- 75 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEIL--- 75 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHH---
Confidence 799999999999999999999996 789999999999888887864 455777765 49999999988 4566677
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCC----hHhhc----cCcEEEEeccCC
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGS----KQPAE----TGQLVILSAGEK 140 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~----~~~a~----~g~~~~~~gg~~ 140 (226)
.++.+ ++++++|+|++++.+...+.+.+. .+..|+.+ |+.|+ +..+. .|..+++++++.
T Consensus 76 ~~l~~-l~~~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~ 143 (275)
T PRK08507 76 PKLLD-IKENTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEK 143 (275)
T ss_pred HHHhc-cCCCCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCC
Confidence 66777 888999999999877766655443 24578999 99885 44433 677888887543
No 35
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=99.73 E-value=5.2e-17 Score=140.16 Aligned_cols=109 Identities=21% Similarity=0.298 Sum_probs=81.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----------------cCCHHHHhhhCCeEEEe
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------------GGSPAEVIKKCTITIGM 63 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------------~~s~~~~~~~advvi~~ 63 (226)
|||+|||+|.||..+|..|+++||+|++|+|++. .+.+.+.|... ..++ +.++.+|+||+|
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~ 80 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVT 80 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEE
Confidence 6899999999999999999999999999999754 46666655432 2344 567789999999
Q ss_pred cCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 64 ~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
++. ....+++ +.+.+.+.++++|+++++. ....+.+.+.+.+ ..++++
T Consensus 81 vk~-~~~~~~~---~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~--~~~~~g 128 (341)
T PRK08229 81 VKS-AATADAA---AALAGHARPGAVVVSFQNG-VRNADVLRAALPG--ATVLAG 128 (341)
T ss_pred ecC-cchHHHH---HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCC--CcEEEE
Confidence 988 4567777 6777888888998888653 3334455555543 345555
No 36
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.72 E-value=1.7e-16 Score=137.29 Aligned_cols=136 Identities=17% Similarity=0.135 Sum_probs=106.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-------CeEEEEcCCch-----hHHHHHHCC--------------CcccCCHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-------FKVTVWNRTLS-----KCDELVAHG--------------ATVGGSPAEVI 54 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-------~~V~~~dr~~~-----~~~~l~~~g--------------~~~~~s~~~~~ 54 (226)
|||+|||.|+||+++|..|+++| |+|.+|.|+++ ..+.+.+.+ +..++++.+++
T Consensus 12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav 91 (365)
T PTZ00345 12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV 91 (365)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence 68999999999999999999997 89999999986 366666432 34577888999
Q ss_pred hhCCeEEEecCCHHHHHHHhhccccccc--ccCCCcEEEecCCC-CHHHH--HHHHHHHHh---cCCcEEecCCCCChHh
Q 027255 55 KKCTITIGMLADPAAALSVVFDKGGVLE--QICPGKGYIDMSTV-DHETS--IKISRAITS---KGGHFLEAPVSGSKQP 126 (226)
Q Consensus 55 ~~advvi~~~p~~~~~~~v~~~~~~l~~--~l~~g~ivvd~st~-~~~~~--~~l~~~~~~---~g~~~ld~pv~g~~~~ 126 (226)
+++|+|++++|. +.+++++ +++.+ .++++.++|.++.. .+.+. +.+.+.+++ ..+.++.+|.+..+..
T Consensus 92 ~~aDiIvlAVPs-q~l~~vl---~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l~~~~~~LsGPs~A~Eva 167 (365)
T PTZ00345 92 EDADLLIFVIPH-QFLESVL---SQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEELGIPCCALSGANVANDVA 167 (365)
T ss_pred hcCCEEEEEcCh-HHHHHHH---HHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHhCCCeEEEECCCHHHHHH
Confidence 999999999988 7899999 77777 67777789988764 22221 233333333 3566789999999998
Q ss_pred hccCcEEEEeccCC
Q 027255 127 AETGQLVILSAGEK 140 (226)
Q Consensus 127 a~~g~~~~~~gg~~ 140 (226)
.+..+.+++++-+.
T Consensus 168 ~~~pt~~vias~~~ 181 (365)
T PTZ00345 168 REEFSEATIGCEDK 181 (365)
T ss_pred cCCCcEEEEEeCCH
Confidence 88999888887765
No 37
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.71 E-value=1.8e-16 Score=140.89 Aligned_cols=134 Identities=25% Similarity=0.366 Sum_probs=114.3
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
|+|+||| +|.||..+|+.|.++|++|++|+|++++...+. +.|+..+.+..++++++|+||+|+|. ..+.+++ .
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl---~ 76 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI---K 76 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH---H
Confidence 8999997 899999999999999999999999998865544 45877777888999999999999998 5667887 7
Q ss_pred ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHhhccCcEEEEeccC
Q 027255 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQPAETGQLVILSAGE 139 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~a~~g~~~~~~gg~ 139 (226)
++.+.++++++|+|++++.+...+.+.+.+. .++.|+.+ |++|+......+...+++.++
T Consensus 77 ~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~-~~~~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 77 EVAPHVKEGSLLMDVTSVKERPVEAMEEYAP-EGVEILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred HHHhhCCCCCEEEEcccccHHHHHHHHHhcC-CCCEEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 7888888999999999998888888877653 57899999 999976666778888888765
No 38
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.71 E-value=4.8e-17 Score=136.81 Aligned_cols=127 Identities=21% Similarity=0.385 Sum_probs=99.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|+|+|||+|.||..||..|.++|++|++||++++..+.+.+.|.. ...+..+.++++|+||+|+|. ..+.+++ ++
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~---~~ 76 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPS---EQ 76 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHH---HH
Confidence 899999999999999999999999999999999999888887753 233334577899999999987 4556666 67
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe-cCCCCCh-HhhccCcEEEE
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE-APVSGSK-QPAETGQLVIL 135 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld-~pv~g~~-~~a~~g~~~~~ 135 (226)
+.+.++++.+|+|++++.+...+.+.+. ...|+. .|++|++ .+.+.+...+|
T Consensus 77 l~~~l~~~~ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf 130 (279)
T PRK07417 77 LIPALPPEAIVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLF 130 (279)
T ss_pred HHHhCCCCcEEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHh
Confidence 7788888999999999987766555433 335888 5999987 45554444333
No 39
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.5e-17 Score=137.94 Aligned_cols=206 Identities=22% Similarity=0.375 Sum_probs=151.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC---C--CcccCCHHHHhh---hCCeEEEecCCHHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH---G--ATVGGSPAEVIK---KCTITIGMLADPAAALS 72 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~---g--~~~~~s~~~~~~---~advvi~~~p~~~~~~~ 72 (226)
+.||+||++.||+.++.|.+.+||.|.+|||+.++++++.+. | +....|+++.+. ...+|++.+.....+..
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 368999999999999999999999999999999999998664 2 445778999875 47889999988888998
Q ss_pred HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhcc
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKG 152 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~ 152 (226)
.+ +++.+.+.+|.+|||-.+.....+.+-.+.+.++|+-|+.+.|+||+.+|+.|.. +|.||+......--++++.
T Consensus 87 ~I---~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GPS-lMpGg~~~Awp~ik~ifq~ 162 (487)
T KOG2653|consen 87 FI---EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGPS-LMPGGSKEAWPHIKDIFQK 162 (487)
T ss_pred HH---HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCCc-cCCCCChHHHHHHHHHHHH
Confidence 88 8899999999999999988777777777888899999999999999999999985 9999998666555555554
Q ss_pred cccccccC--------cccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHHHh
Q 027255 153 KGPTMLQS--------NYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVVKD 221 (226)
Q Consensus 153 ~~~~~~~~--------~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 221 (226)
......++ +-..+--+++.+..+++- +|.++..++.++... -|+.++..+.++.-|.+
T Consensus 163 iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYG---------DMqLI~EaY~vlk~~--~gls~~eia~vF~~WN~ 228 (487)
T KOG2653|consen 163 IAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYG---------DMQLICEAYDVLKSV--LGLSNDEIAEVFDDWNK 228 (487)
T ss_pred HHHHhcCCCCCeeeecCCCCccchhhhccCcccc---------hHHHHHHHHHHHHHh--cCCcHHHHHHHHHhhcc
Confidence 43322211 111122244443333221 344555555555532 35556666666555543
No 40
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.70 E-value=1.7e-16 Score=143.33 Aligned_cols=124 Identities=19% Similarity=0.356 Sum_probs=102.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhhC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC 57 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~a 57 (226)
+|+|||+|.||..||.+|+.+||+|++||++++++++. .+.| ++.+.+++++ .+|
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~-~~a 87 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL-ADC 87 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-CCC
Confidence 69999999999999999999999999999999988773 4555 4677888664 699
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEE-EecCCCCHHHHHHHHHHHHh----cCCcEEe-cCCCCChHhhccCc
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGY-IDMSTVDHETSIKISRAITS----KGGHFLE-APVSGSKQPAETGQ 131 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~iv-vd~st~~~~~~~~l~~~~~~----~g~~~ld-~pv~g~~~~a~~g~ 131 (226)
|+||.|+|++..++..++++ +...+++++++ .|+||.++. ++++.+.. .|++|++ +|++ .
T Consensus 88 DlViEav~E~~~vK~~vf~~--l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------~ 153 (507)
T PRK08268 88 DLVVEAIVERLDVKQALFAQ--LEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------K 153 (507)
T ss_pred CEEEEcCcccHHHHHHHHHH--HHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------e
Confidence 99999999999999998743 55666788888 489999886 45555443 3899999 8888 5
Q ss_pred EEEEeccCC
Q 027255 132 LVILSAGEK 140 (226)
Q Consensus 132 ~~~~~gg~~ 140 (226)
|+.+++|+.
T Consensus 154 LvEvv~g~~ 162 (507)
T PRK08268 154 LVEVVSGLA 162 (507)
T ss_pred eEEEeCCCC
Confidence 889998854
No 41
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=99.70 E-value=6.8e-17 Score=124.69 Aligned_cols=134 Identities=19% Similarity=0.232 Sum_probs=103.9
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHhhhCCeEEEecCCH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVIKKCTITIGMLADP 67 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~~~advvi~~~p~~ 67 (226)
||+|||.|+||+++|..|+.+||+|++|.|+++.++.+.+.+ +.++++++++++++|+|++++|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs- 79 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS- 79 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence 799999999999999999999999999999999999887643 34678899999999999999998
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCCCC-HHH----HHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVD-HET----SIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~----~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~ 139 (226)
...++++ +.+.+.+++++++|.++..- +.+ .+.+.+.+....+.++.+|.+..+...+..+..++++-+
T Consensus 80 ~~~~~~~---~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~ 153 (157)
T PF01210_consen 80 QAHREVL---EQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKN 153 (157)
T ss_dssp GGHHHHH---HHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESS
T ss_pred HHHHHHH---HHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecc
Confidence 6788999 88999999999999998753 333 344444444445789999999999999888887777654
No 42
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.69 E-value=3.4e-16 Score=134.66 Aligned_cols=132 Identities=17% Similarity=0.200 Sum_probs=108.8
Q ss_pred CeEEEEecChh--------------------HHHHHHHHHhCCCeEEEEcCCch-----hHHHHHHCCCcccCCHHHHhh
Q 027255 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGSPAEVIK 55 (226)
Q Consensus 1 m~IgvIG~G~m--------------------G~~~A~~l~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~~~~~ 55 (226)
|||.|.|+|+- |.+||.+|+++||+|++|||+++ +.+.+...|+.++.++.++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~ 80 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAK 80 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHh
Confidence 78999999974 88999999999999999999987 455677789988899999999
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHH-HHHHHHHH----hcCCcEEe-cCCCCChHhhcc
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETS-IKISRAIT----SKGGHFLE-APVSGSKQPAET 129 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~-~~l~~~~~----~~g~~~ld-~pv~g~~~~a~~ 129 (226)
++|+||+|+|++.++++++ .++.+.++++++|||+||+.|... +.+.+.+. ..|+.+.+ +++.| ++.
T Consensus 81 ~ADvVIlaVP~~~~v~~Vl---~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~G----ae~ 153 (342)
T PRK12557 81 HGEIHILFTPFGKKTVEIA---KNILPHLPENAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPG----TPQ 153 (342)
T ss_pred CCCEEEEECCCcHHHHHHH---HHHHhhCCCCCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCccccc----ccc
Confidence 9999999999977689998 678888989999999999999987 67777765 33565553 34444 455
Q ss_pred CcEEEEeccC
Q 027255 130 GQLVILSAGE 139 (226)
Q Consensus 130 g~~~~~~gg~ 139 (226)
+.+.+|+||.
T Consensus 154 g~l~Vm~gg~ 163 (342)
T PRK12557 154 HGHYVIAGKT 163 (342)
T ss_pred chheEEeCCC
Confidence 6678888874
No 43
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=99.69 E-value=4e-16 Score=134.10 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=107.5
Q ss_pred eEEEEecChhHHHHHHHHHhCC--------CeEEEEcC-----CchhHHHHHHC--------C------CcccCCHHHHh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG--------FKVTVWNR-----TLSKCDELVAH--------G------ATVGGSPAEVI 54 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G--------~~V~~~dr-----~~~~~~~l~~~--------g------~~~~~s~~~~~ 54 (226)
||+|||.|+||+++|..|+.+| |+|++|.| +++..+.+.+. | +++++++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 6999999999999999999999 99999998 54555555432 1 34567889999
Q ss_pred hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC-CHH--HHHHHHHHHHh---cCCcEEecCCCCChHhhc
Q 027255 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHE--TSIKISRAITS---KGGHFLEAPVSGSKQPAE 128 (226)
Q Consensus 55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~--~~~~l~~~~~~---~g~~~ld~pv~g~~~~a~ 128 (226)
+++|+||+++|+ +.+++++ ..+.+.+++++++|.++.. .+. +.+.+.+.+.+ ..+.++.+|.+..+...+
T Consensus 81 ~~ADiIIlAVPs-~~i~~vl---~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~ 156 (342)
T TIGR03376 81 KGADILVFVIPH-QFLEGIC---KQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKE 156 (342)
T ss_pred hcCCEEEEECCh-HHHHHHH---HHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcC
Confidence 999999999998 7899988 7888888888999998874 444 44444444443 356779999999999999
Q ss_pred cCcEEEEeccC
Q 027255 129 TGQLVILSAGE 139 (226)
Q Consensus 129 ~g~~~~~~gg~ 139 (226)
..+.+++++-+
T Consensus 157 ~pt~~~ia~~~ 167 (342)
T TIGR03376 157 KFSETTVGYRD 167 (342)
T ss_pred CCceEEEEeCC
Confidence 99998888888
No 44
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=99.67 E-value=3.8e-16 Score=140.70 Aligned_cols=125 Identities=19% Similarity=0.270 Sum_probs=97.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKK 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~ 56 (226)
.+|+|||+|.||..||.+++++||+|++||++++++++. .+.| ++.+.++++ +.+
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 479999999999999999999999999999999988753 3334 346778865 469
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHHH----HhcCCcEEe-cCCCCChHhhccC
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAI----TSKGGHFLE-APVSGSKQPAETG 130 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~~----~~~g~~~ld-~pv~g~~~~a~~g 130 (226)
||+||.|+|++.+++..+|+ ++...++++.++. ++||.++. ++++.+ +..|.+|++ +|++
T Consensus 85 aDlVIEav~E~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~--------- 150 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVM--------- 150 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccC---------
Confidence 99999999999999998874 3556666666654 56666664 344444 335899999 8888
Q ss_pred cEEEEeccCC
Q 027255 131 QLVILSAGEK 140 (226)
Q Consensus 131 ~~~~~~gg~~ 140 (226)
.++.+++|+.
T Consensus 151 ~LvEvv~g~~ 160 (503)
T TIGR02279 151 ALVEVVSGLA 160 (503)
T ss_pred ceEEEeCCCC
Confidence 3889999954
No 45
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.66 E-value=6.7e-15 Score=122.41 Aligned_cols=204 Identities=16% Similarity=0.195 Sum_probs=132.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCe---EEEEcCCchhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFK---VTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|||||||+|+||.+|++.|.+.|++ +.+|+|++++.+.+.+. ++..+.+..++++++|+||+|+| ++.+.+++
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl- 78 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVL- 78 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 8999999999999999999998864 57999999999888775 57778899999999999999998 57888888
Q ss_pred cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCCCCCCCcchhhccccc
Q 027255 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGP 155 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~ 155 (226)
+++ . +.++++||++... .....+.+.+......+...|+. +.+.....+.++.++. ...++++..+.
T Consensus 79 --~~l-~-~~~~~~vis~~ag--~~~~~l~~~~~~~~~~~r~~P~~---~~a~~~g~t~~~~~~~----~~~~l~~~lG~ 145 (258)
T PRK06476 79 --RAL-R-FRPGQTVISVIAA--TDRAALLEWIGHDVKLVRAIPLP---FVAERKGVTAIYPPDP----FVAALFDALGT 145 (258)
T ss_pred --HHh-c-cCCCCEEEEECCC--CCHHHHHHHhCCCCCEEEECCCC---hhhhCCCCeEecCCHH----HHHHHHHhcCC
Confidence 444 2 4578888886543 34455555554444567788883 2233334455555542 22333333332
Q ss_pred cc--ccCcccCCc-----cchHHHHHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHHcC--CCCCChHHHHHHH
Q 027255 156 TM--LQSNYAPAF-----PLKHQQKDMRLALALGDENAVSMPIA-AAANEAFKKARSLG--LGDNDFSAVFEVV 219 (226)
Q Consensus 156 ~~--~~~~~~~~~-----~~~~~~kd~~~~~~~a~~~g~~~p~~-~~~~~~~~~a~~~g--~g~~d~~~~~~~~ 219 (226)
.+ .+.+.-..+ ....+..=+..+.+.+.+.|++.... +.+.+.+..+.+.. .++.++..+.+.+
T Consensus 146 ~~~~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~~~~~l~~~v 219 (258)
T PRK06476 146 AVECDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKTDFSALSREF 219 (258)
T ss_pred cEEECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHhC
Confidence 22 111111111 23344445778888899999986543 44445555444331 3445556665543
No 46
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.65 E-value=3.5e-15 Score=128.89 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=95.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC---------------CcccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG---------------ATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~~~~~~advvi~~~p 65 (226)
|||+|||+|.||+.+|..|+++| +|.+|.|+++..+.+.+.+ +..++++.++++++|+||+++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 69999999999999999999999 6889999999988887542 2345677788899999999998
Q ss_pred CHHHHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHh----cCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITS----KGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (226)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~----~g~~~ld~pv~g~~~~a~~g~~~~~~gg~ 139 (226)
. ..+++++ +.+.+.+.+++++|.++.. ...+.+.+.+.+.+ ..+..+.+|-+..+......+..++.+-+
T Consensus 87 s-~~~~~vl---~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~ 161 (341)
T PRK12439 87 S-HGFRGVL---TELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPD 161 (341)
T ss_pred H-HHHHHHH---HHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCC
Confidence 7 6789998 7888888888888887764 33223333333333 22345666755554444444444444433
No 47
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=99.65 E-value=9.1e-16 Score=121.34 Aligned_cols=118 Identities=19% Similarity=0.256 Sum_probs=85.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------------------CCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------------------GATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~~~~~~advv 60 (226)
|||+|||+|.+|.++|..|+++||+|++||.++++++.+.+. ...++.+..++++++|++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 899999999999999999999999999999999999887643 135677888989999999
Q ss_pred EEecCCH---------HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHH-HHHHhcC-----CcEEecCCC
Q 027255 61 IGMLADP---------AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKIS-RAITSKG-----GHFLEAPVS 121 (226)
Q Consensus 61 i~~~p~~---------~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~-~~~~~~g-----~~~ld~pv~ 121 (226)
|+|+|++ ..++.++ +.+.+.++++++||..||+.|.+++++. ..+.+.+ +.+.-+|-+
T Consensus 81 ~I~VpTP~~~~~~~Dls~v~~a~---~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr 153 (185)
T PF03721_consen 81 FICVPTPSDEDGSPDLSYVESAI---ESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER 153 (185)
T ss_dssp EE----EBETTTSBETHHHHHHH---HHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred EEecCCCccccCCccHHHHHHHH---HHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence 9999865 3466677 7788899999999999999999999555 4444433 356666644
No 48
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.65 E-value=2.9e-15 Score=128.11 Aligned_cols=196 Identities=17% Similarity=0.128 Sum_probs=141.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~~~~~~advv 60 (226)
|||.|||.|.+|...+..|++.||+|+.+|.++++++.+... | .+++++.+++++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 899999999999999999999999999999999999887643 1 56788999999999999
Q ss_pred EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcC----CcEEecCCCCChHhh
Q 027255 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKG----GHFLEAPVSGSKQPA 127 (226)
Q Consensus 61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g----~~~ld~pv~g~~~~a 127 (226)
|+|+|++. .++.++ +.+.+.++..++||.-||+.|.+.+.+.+.+.... +.++..|-+=.+..|
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava---~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~A 157 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVA---KDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSA 157 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHH---HHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcch
Confidence 99999754 466666 77888887779999999999999999998887754 335555544333222
Q ss_pred ccCcE---EEEeccCCCC-------------------------------------------------------CCCcchh
Q 027255 128 ETGQL---VILSAGEKDL-------------------------------------------------------GGIANPM 149 (226)
Q Consensus 128 ~~g~~---~~~~gg~~~~-------------------------------------------------------~~~~s~~ 149 (226)
-...+ -+.+|..... |.....+
T Consensus 158 v~D~~~PdRIViG~~~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V 237 (414)
T COG1004 158 VYDFLYPDRIVIGVRSERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEKVGADVKQV 237 (414)
T ss_pred hhhccCCCeEEEccCChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 21111 1556654410 0000111
Q ss_pred hccc--ccccccCcccC--CccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHH
Q 027255 150 FKGK--GPTMLQSNYAP--AFPLKHQQKDMRLALALGDENAVSMPIAAAANEAF 199 (226)
Q Consensus 150 ~~~~--~~~~~~~~~~~--~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~ 199 (226)
.+.. -+|+-..-..+ ||.=.++-||++..+..++++|.+.+|++++.++=
T Consensus 238 ~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN 291 (414)
T COG1004 238 AEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVN 291 (414)
T ss_pred HHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 1111 13333222233 55668889999999999999999999999886653
No 49
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.63 E-value=9.2e-15 Score=125.51 Aligned_cols=135 Identities=16% Similarity=0.240 Sum_probs=91.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC--------------CcccCCHHHHh-hhCCeEEEecC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG--------------ATVGGSPAEVI-KKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~~~~-~~advvi~~~p 65 (226)
|||+|||+|.||+.+|..|+++||+|.+|+|+++.++.+.+.+ +....++.+.+ ..+|+||+++|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk 80 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP 80 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC
Confidence 8999999999999999999999999999999998888887631 12345666665 58999999998
Q ss_pred CHHHHHHHhhccccccc-ccCCCcEEEecCCCC-HH----HHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255 66 DPAAALSVVFDKGGVLE-QICPGKGYIDMSTVD-HE----TSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (226)
Q Consensus 66 ~~~~~~~v~~~~~~l~~-~l~~g~ivvd~st~~-~~----~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~ 139 (226)
+ .++++++ +.+.+ .+.+++.++.+++.- .. ..+.+.+.+..+.+..+.+|.+.........+...+.|.+
T Consensus 81 s-~~~~~~l---~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~ 156 (326)
T PRK14620 81 T-QQLRTIC---QQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQN 156 (326)
T ss_pred H-HHHHHHH---HHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCC
Confidence 7 7788888 77777 777777666665532 21 1233344443333445556654333332333344444433
No 50
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.62 E-value=1.6e-15 Score=107.28 Aligned_cols=89 Identities=24% Similarity=0.408 Sum_probs=76.2
Q ss_pred eEEEEecChhHHHHHHHHHhCC---CeEEEE-cCCchhHHHHHHC-CCcccC-CHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG---FKVTVW-NRTLSKCDELVAH-GATVGG-SPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G---~~V~~~-dr~~~~~~~l~~~-g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
||||||.|+||++|++.|.++| ++|+++ +|++++.+++.+. ++.... +..++++++|+||+|+|. .++.+++
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH-
Confidence 7999999999999999999999 899955 9999999998665 666666 899999999999999976 7888888
Q ss_pred cccccccccCCCcEEEecCC
Q 027255 76 DKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st 95 (226)
..+ ....+++++|+++.
T Consensus 79 --~~i-~~~~~~~~vis~~a 95 (96)
T PF03807_consen 79 --SEI-PHLLKGKLVISIAA 95 (96)
T ss_dssp --HHH-HHHHTTSEEEEEST
T ss_pred --HHH-hhccCCCEEEEeCC
Confidence 667 66779999999764
No 51
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.62 E-value=1.8e-15 Score=127.58 Aligned_cols=120 Identities=19% Similarity=0.246 Sum_probs=95.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-----------HHHCCC-------------cccCCHHHHhhhC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHGA-------------TVGGSPAEVIKKC 57 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-----------l~~~g~-------------~~~~s~~~~~~~a 57 (226)
+|+|||+|.||..||.+++.+||+|++||++++..+. +.+.|. +.++++ +.+++|
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~ 85 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADR 85 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCC
Confidence 7999999999999999999999999999999998776 444442 256777 557999
Q ss_pred CeEEEecCCHHHHHHHhhccccccccc-CCCcEEEecCCCCHHHHHHHHHHHHhc--CCcEEe-cCCCCCh
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQI-CPGKGYIDMSTVDHETSIKISRAITSK--GGHFLE-APVSGSK 124 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l-~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~~ld-~pv~g~~ 124 (226)
|+||.|+|++..++..+|+ .+...+ ++++++++.||+.|.+.........++ |.+|.+ +|+++..
T Consensus 86 d~ViEav~E~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv 154 (286)
T PRK07819 86 QLVIEAVVEDEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV 154 (286)
T ss_pred CEEEEecccCHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE
Confidence 9999999999999998874 355555 789999998888777666555444445 788888 5666543
No 52
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.62 E-value=5.4e-15 Score=125.97 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=98.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCC--cccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
++|+|||+|.||..+|+.|.+.|+ +|++|||++++.+.+.+.|+ ..+.++.++++++|+||+|+|. .....++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~-- 83 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVA-- 83 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence 589999999999999999999985 89999999999888887775 3456788888999999999998 4556666
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK 124 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~ 124 (226)
+++.+.++++.+|+|++++.....+.+.+.+. .++.|+.+ |+.|++
T Consensus 84 -~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~-~~~~~v~~hPm~g~e 130 (307)
T PRK07502 84 -AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLP-EGVHFIPGHPLAGTE 130 (307)
T ss_pred -HHHHhhCCCCCEEEeCccchHHHHHHHHHhCC-CCCeEEeCCCCCCCc
Confidence 56667788899999999988877777666543 47789998 999865
No 53
>PRK07680 late competence protein ComER; Validated
Probab=99.62 E-value=4.3e-15 Score=124.57 Aligned_cols=127 Identities=17% Similarity=0.278 Sum_probs=99.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~ 74 (226)
|+|+|||+|.||..|++.|.++|+ +|.+|+|++++.+.+.+. |+....+..+++.++|+||+|+|. ..+++++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p-~~~~~vl 79 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKP-LDIYPLL 79 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCH-HHHHHHH
Confidence 799999999999999999999984 799999999988887664 677788899999999999999975 6788888
Q ss_pred hcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255 75 FDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g 137 (226)
+++.+.+.++++||+++... ..+.+.+.+..+.++++.. .+..+..|...++.|
T Consensus 80 ---~~l~~~l~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p~----~~~~~~~G~t~~~~g 133 (273)
T PRK07680 80 ---QKLAPHLTDEHCLVSITSPI--SVEQLETLVPCQVARIIPS----ITNRALSGASLFTFG 133 (273)
T ss_pred ---HHHHhhcCCCCEEEEECCCC--CHHHHHHHcCCCEEEECCC----hHHHHhhccEEEeeC
Confidence 77777888889999998743 3455555554444455542 344566787766654
No 54
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.61 E-value=2.9e-15 Score=126.88 Aligned_cols=130 Identities=18% Similarity=0.252 Sum_probs=95.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-----------HHHCC------------CcccCCHHHHhhhC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-----------LVAHG------------ATVGGSPAEVIKKC 57 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-----------l~~~g------------~~~~~s~~~~~~~a 57 (226)
++|+|||+|.||.+||.+|+++|++|++||+++++.++ +.+.| .....+..+++++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 37999999999999999999999999999999988753 33333 12233344678999
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHH-HHhcCCcEEecCCCCChHhhccCcEEEE
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRA-ITSKGGHFLEAPVSGSKQPAETGQLVIL 135 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~-~~~~g~~~ld~pv~g~~~~a~~g~~~~~ 135 (226)
|+||.|+|++.+++..+++ ++.+.++++++|+ ++|++++....+.... .+-.+++|.+.|..+ .++.+
T Consensus 85 D~Vieav~e~~~~k~~v~~--~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~--------~lvei 154 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFS--ELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM--------KLVEI 154 (295)
T ss_pred CEEEEcCccCHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--------ceEEE
Confidence 9999999988888888764 3667788888886 7888877655443322 112378889888764 44566
Q ss_pred eccCC
Q 027255 136 SAGEK 140 (226)
Q Consensus 136 ~gg~~ 140 (226)
+.|+.
T Consensus 155 v~g~~ 159 (295)
T PLN02545 155 IRGAD 159 (295)
T ss_pred eCCCC
Confidence 66643
No 55
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=99.61 E-value=2.8e-14 Score=127.54 Aligned_cols=120 Identities=16% Similarity=0.165 Sum_probs=99.0
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHCC-------------------CcccCCHHHHhhhCCe
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAHG-------------------ATVGGSPAEVIKKCTI 59 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~adv 59 (226)
|+|+|||+|.+|.++|..|+++ ||+|+++|+++++++.+.+.+ ...+++..++++++|+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 8999999999999999999988 478999999999999875432 3355667788899999
Q ss_pred EEEecCCHH--------------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--C--CcEEecCCC
Q 027255 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--G--GHFLEAPVS 121 (226)
Q Consensus 60 vi~~~p~~~--------------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g--~~~ld~pv~ 121 (226)
+|+|+|++. .++.++ +.+.+.++++++||..||+.|.+++++...+.+. | +.+.-+|-+
T Consensus 82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~---~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PEr 158 (473)
T PLN02353 82 VFVSVNTPTKTRGLGAGKAADLTYWESAA---RMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEF 158 (473)
T ss_pred EEEEeCCCCCCCCCcCCCCCcHHHHHHHH---HHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCc
Confidence 999998654 466666 7788889999999999999999999999988764 3 456677755
Q ss_pred CC
Q 027255 122 GS 123 (226)
Q Consensus 122 g~ 123 (226)
=.
T Consensus 159 l~ 160 (473)
T PLN02353 159 LA 160 (473)
T ss_pred cC
Confidence 33
No 56
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.60 E-value=7.6e-15 Score=128.13 Aligned_cols=119 Identities=16% Similarity=0.246 Sum_probs=97.9
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+||| +|.||..+|+.|.++||+|++|||++. .++++++++||+||+|+|.. ....++ .+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~---~~ 161 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVI---AR 161 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHH---HH
Confidence 4799998 999999999999999999999998641 35678888999999999995 456666 66
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChHhhccCcEEEEeccCC
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQPAETGQLVILSAGEK 140 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~~a~~g~~~~~~gg~~ 140 (226)
+.+ ++++++|+|++|+.+.....+.+... ..|+ ..|++|++...-.+..++++++..
T Consensus 162 l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~ 219 (374)
T PRK11199 162 LPP-LPEDCILVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQ 219 (374)
T ss_pred HhC-CCCCcEEEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCC
Confidence 777 88999999999998888877776532 2588 779999987777778888877643
No 57
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.58 E-value=8.3e-15 Score=123.94 Aligned_cols=115 Identities=19% Similarity=0.346 Sum_probs=87.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------CC-------------CcccCCHHHHhhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------HG-------------ATVGGSPAEVIKK 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~~~~~~ 56 (226)
++|+|||+|.||..||.+|+++|++|++||+++++++.+.+ .| ++.+++.+ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 47999999999999999999999999999999998776432 23 34556664 5789
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHHHHHHHHHHHHh----cCCcEEe-cCCC
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHETSIKISRAITS----KGGHFLE-APVS 121 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~~~~~l~~~~~~----~g~~~ld-~pv~ 121 (226)
||+||.|+|++.+++..++ .++.+.++++++++ ++|+..+. ++++.+.. .|++|++ +|++
T Consensus 84 aD~Vieavpe~~~~k~~~~--~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~ 149 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIF--AQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVM 149 (292)
T ss_pred CCEEEEcCcCCHHHHHHHH--HHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccC
Confidence 9999999998777666554 46778888899887 56666654 46665532 2778888 4444
No 58
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.58 E-value=3.7e-14 Score=123.27 Aligned_cols=134 Identities=15% Similarity=0.211 Sum_probs=102.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc----ccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT----VGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~----~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
++|+|||+|.||..||+.|.++|++|.+|++++++.+.....+.. ...++.+++++||+||+|+|. ..+.+++
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-- 77 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-- 77 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH--
Confidence 589999999999999999999999999999988876554444332 235677888999999999998 5678888
Q ss_pred cccccc-ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH-h-------hccCcEEEEeccC
Q 027255 77 KGGVLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ-P-------AETGQLVILSAGE 139 (226)
Q Consensus 77 ~~~l~~-~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~-~-------a~~g~~~~~~gg~ 139 (226)
.++.+ .++++.+|.|.++++....+.+.+. ...+..|+.+ |+.|++. + .-.+..++++.++
T Consensus 78 -~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~ 148 (359)
T PRK06545 78 -AELADLELKPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDD 148 (359)
T ss_pred -HHHhhcCCCCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCC
Confidence 66766 4778999999999998877777665 3457789994 9998742 1 1244445666544
No 59
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.58 E-value=1.6e-14 Score=120.98 Aligned_cols=98 Identities=18% Similarity=0.245 Sum_probs=84.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|||+|||+|+||.+|++.|.++|+ +|++|||++++.+.+.+ .|+..+.+..+++++||+||+|+|. ..+++++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence 589999999999999999999885 69999999999988875 6887888899999999999999985 8899998
Q ss_pred cccccccccCCCcEEEecCCC-CHHHHH
Q 027255 76 DKGGVLEQICPGKGYIDMSTV-DHETSI 102 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~-~~~~~~ 102 (226)
+++.+.++++++||+.... +.+..+
T Consensus 81 --~~l~~~~~~~~lvISi~AGi~i~~l~ 106 (272)
T PRK12491 81 --NQIKDQIKNDVIVVTIAAGKSIKSTE 106 (272)
T ss_pred --HHHHHhhcCCcEEEEeCCCCcHHHHH
Confidence 7777778788899997664 444433
No 60
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.57 E-value=6.6e-14 Score=117.10 Aligned_cols=135 Identities=21% Similarity=0.306 Sum_probs=104.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--HHHHHHCCCccc--CCH-HHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVG--GSP-AEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--~~~l~~~g~~~~--~s~-~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|+|+|+|+|.||..+|+.|.++|+.|.+|+++... .+...+.|+... .+. .+.+..+|+||+++|- .+..+++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l- 81 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL- 81 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH-
Confidence 68999999999999999999999998777665554 444444555432 233 6677789999999998 6777888
Q ss_pred cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh--HhhccCcEEEEeccCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK--QPAETGQLVILSAGEK 140 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~--~~a~~g~~~~~~gg~~ 140 (226)
+.+.+.+++|++|+|.+++.-...+.+.+...+.. .|+.+ |++|++ ..--++..++++-++.
T Consensus 82 --~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~ 146 (279)
T COG0287 82 --KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEG 146 (279)
T ss_pred --HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCC
Confidence 78888999999999999998888888877776555 89988 999994 3334566666665543
No 61
>PLN02712 arogenate dehydrogenase
Probab=99.57 E-value=3.3e-14 Score=131.96 Aligned_cols=120 Identities=13% Similarity=0.213 Sum_probs=96.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|+|||||+|.||..+|+.|.+.|++|++|||+... +...+.|+..+.+.+++++ .+|+||+|+|. ..+.+++ +.
T Consensus 370 ~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi---~~ 444 (667)
T PLN02712 370 LKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVL---KS 444 (667)
T ss_pred CEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHH---HH
Confidence 68999999999999999999999999999998654 4555678877788888876 58999999996 6777777 55
Q ss_pred ccc-ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChHh
Q 027255 80 VLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQP 126 (226)
Q Consensus 80 l~~-~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~~ 126 (226)
+.. .++++++|+|++++.....+.+.+. ...++.|+ ..|++|.+..
T Consensus 445 l~~~~lk~g~ivvDv~SvK~~~~~~~~~~-l~~~~~~v~~HPm~G~e~~ 492 (667)
T PLN02712 445 LPFQRLKRSTLFVDVLSVKEFPRNLFLQH-LPQDFDILCTHPMFGPESG 492 (667)
T ss_pred HHHhcCCCCcEEEECCCccHHHHHHHHHh-ccCCCceEeeCCCCCcccc
Confidence 543 5778999999999875444444444 34578888 7799998864
No 62
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=2e-14 Score=122.68 Aligned_cols=107 Identities=22% Similarity=0.322 Sum_probs=91.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------C-CcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------G-ATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~~~~~~advv 60 (226)
++|+|||||.+|.++|..++++|++|+.+|.++.+++.+.+. | .+.++++.++. .||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~-~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK-ECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc-cCCEE
Confidence 589999999999999999999999999999999998887643 1 45566666654 89999
Q ss_pred EEecCCHH---------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255 61 IGMLADPA---------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (226)
Q Consensus 61 i~~~p~~~---------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~ 111 (226)
++|+|++- .++... +.+.+.|++|.+||--||+.|.+++++...+.+.
T Consensus 89 iI~VPTPl~~~~~pDls~v~~aa---~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~ 145 (436)
T COG0677 89 IICVPTPLKKYREPDLSYVESAA---RSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE 145 (436)
T ss_pred EEEecCCcCCCCCCChHHHHHHH---HHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence 99999752 345555 6788999999999999999999999999999885
No 63
>PLN02256 arogenate dehydrogenase
Probab=99.56 E-value=6.1e-14 Score=119.07 Aligned_cols=120 Identities=14% Similarity=0.259 Sum_probs=96.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|+|+|||+|.||..+|+.|.+.|++|++|++++.. +.....|+....+.++++ .++|+||+|+|. ..+.+++ ..
T Consensus 37 ~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl---~~ 111 (304)
T PLN02256 37 LKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVL---RS 111 (304)
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHH---Hh
Confidence 68999999999999999999999999999998743 444556877778888876 469999999987 5778887 66
Q ss_pred c-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHh
Q 027255 80 V-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQP 126 (226)
Q Consensus 80 l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~ 126 (226)
+ .+.++++++|+|.+++.-...+.+.+.+. .+..|+-+ |++|.+..
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~ 159 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESG 159 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCC
Confidence 6 56678999999999987666666666553 35678877 88888753
No 64
>PRK07574 formate dehydrogenase; Provisional
Probab=99.54 E-value=7.7e-14 Score=121.59 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=98.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|+|||||+|.||+.+|++|...|.+|++|||++...+.....|+....+++++++.||+|++++|..++.+.++. .+.
T Consensus 193 ktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 270 (385)
T PRK07574 193 MTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFD--ADV 270 (385)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhC--HHH
Confidence 589999999999999999999999999999987544444455777678999999999999999999999999883 467
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
+..+++|.++||++....-....+.+.+.+..+.
T Consensus 271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCcc
Confidence 7889999999999999999999999999886554
No 65
>PLN03139 formate dehydrogenase; Provisional
Probab=99.53 E-value=1.3e-13 Score=120.10 Aligned_cols=113 Identities=12% Similarity=0.077 Sum_probs=99.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||+.+|++|...|.+|.+|||++...+.....|+....++++++++||+|++++|..+..+.++. .+.
T Consensus 200 ktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~--~~~ 277 (386)
T PLN03139 200 KTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFN--KER 277 (386)
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhC--HHH
Confidence 579999999999999999999999999999986555555556777777999999999999999999999999873 357
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ 115 (226)
+..+++|.++||++....-....+.+.+.+.-+..
T Consensus 278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~G 312 (386)
T PLN03139 278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGG 312 (386)
T ss_pred HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceE
Confidence 88899999999999999999999999998765543
No 66
>PLN02712 arogenate dehydrogenase
Probab=99.51 E-value=2.2e-13 Score=126.52 Aligned_cols=119 Identities=12% Similarity=0.210 Sum_probs=96.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|+|+|||+|.||..+|+.|.+.|++|++|||+... +...+.|+..+.++.+++ +++|+|++|+|. ..+.+++ ++
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl---~~ 127 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVL---KS 127 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHH---Hh
Confidence 68999999999999999999999999999998544 455567888888888866 469999999996 6788888 55
Q ss_pred cc-cccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH
Q 027255 80 VL-EQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ 125 (226)
Q Consensus 80 l~-~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~ 125 (226)
+. +.++++++|+|++++.....+.+.+.+. .+..|+.. |++|.+.
T Consensus 128 l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~-~~~~~v~~HPMaG~e~ 174 (667)
T PLN02712 128 LPLQRLKRNTLFVDVLSVKEFAKNLLLDYLP-EDFDIICSHPMFGPQS 174 (667)
T ss_pred hhhhcCCCCeEEEECCCCcHHHHHHHHHhcC-CCCeEEeeCCcCCCcc
Confidence 54 5678899999999988766666665553 46677777 9998874
No 67
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=99.51 E-value=4e-14 Score=108.60 Aligned_cols=112 Identities=21% Similarity=0.243 Sum_probs=89.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CC----cccCCHHHHhhhCCeEEEecCCHHH-HHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GA----TVGGSPAEVIKKCTITIGMLADPAA-ALSV 73 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~----~~~~s~~~~~~~advvi~~~p~~~~-~~~v 73 (226)
++|+|||+|.||..+++.|.+.| ++|++|||++++.+.+.+. +. ....+..++++++|+|++|+|.+.+ ++.+
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~ 99 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDEL 99 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCC
Confidence 47999999999999999999986 7899999999988876654 32 2456777778999999999998665 3444
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.+.. ..++++++++|+++..+.+ .+.+.+++.|+.++++
T Consensus 100 ~~~~----~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~g 138 (155)
T cd01065 100 PLPP----SLLKPGGVVYDVVYNPLET--PLLKEARALGAKTIDG 138 (155)
T ss_pred CCCH----HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeCC
Confidence 3221 3467899999999985544 8888899999988876
No 68
>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D ....
Probab=99.51 E-value=2.9e-14 Score=105.42 Aligned_cols=78 Identities=36% Similarity=0.706 Sum_probs=70.9
Q ss_pred CCCCcchhhcccccc-cccCcccCCccchHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCChHHHHHHH
Q 027255 142 LGGIANPMFKGKGPT-MLQSNYAPAFPLKHQQKDMRLALALGDENAVSMPIAAAANEAFKKARSLGLGDNDFSAVFEVV 219 (226)
Q Consensus 142 ~~~~~s~~~~~~~~~-~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 219 (226)
.+++.|++++.+.|+ +.+++|.++|++++++||++++++++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 44 ~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 44 AGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp TSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred cCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 466788999999985 999999999999999999999999999999999999999999999999999999999999986
No 69
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.51 E-value=1.7e-14 Score=106.88 Aligned_cols=108 Identities=20% Similarity=0.335 Sum_probs=73.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
|||+|||.|++|..+++.|.++||+|. +|+|+++..+++... +...+.++.++++.+|++|+++|+ .++.++. +
T Consensus 11 l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpD-daI~~va---~ 86 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPD-DAIAEVA---E 86 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-C-CHHHHHH---H
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEech-HHHHHHH---H
Confidence 689999999999999999999999987 468998888877664 555667788999999999999999 5788888 7
Q ss_pred ccccc--cCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255 79 GVLEQ--ICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 79 ~l~~~--l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ 115 (226)
++... ..+|++|+.||-..+.... +-++++|+..
T Consensus 87 ~La~~~~~~~g~iVvHtSGa~~~~vL---~p~~~~Ga~~ 122 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTSGALGSDVL---APARERGAIV 122 (127)
T ss_dssp HHHCC--S-TT-EEEES-SS--GGGG---HHHHHTT-EE
T ss_pred HHHHhccCCCCcEEEECCCCChHHhh---hhHHHCCCeE
Confidence 77666 7799999999976544332 3344556543
No 70
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.50 E-value=8.7e-13 Score=110.13 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=92.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCC---CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G---~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
|+|+|||+|.||..+++.|.++| ++|.+|+|++++.+.+.+. |+....+..++++++|+||+|+|. ..+++++
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~-- 79 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL-- 79 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH--
Confidence 68999999999999999999999 7899999999998888875 888888888989999999999977 6788888
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g 137 (226)
+.+.+.+ +++||.++...+. ..+.+.+. .+..++.+ +-..+.....+...++.+
T Consensus 80 -~~l~~~~--~~~vvs~~~gi~~--~~l~~~~~-~~~~iv~~-~P~~p~~~~~~~~~i~~~ 133 (267)
T PRK11880 80 -SELKGQL--DKLVVSIAAGVTL--ARLERLLG-ADLPVVRA-MPNTPALVGAGMTALTAN 133 (267)
T ss_pred -HHHHhhc--CCEEEEecCCCCH--HHHHHhcC-CCCcEEEe-cCCchHHHcCceEEEecC
Confidence 6666655 5677777665432 23444432 34555553 112333444444434443
No 71
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.50 E-value=7.5e-14 Score=119.04 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=82.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------C---------CCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H---------GATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~---------g~~~~~s~~~~~~~advv 60 (226)
.+|+|||+|.||..||.+++.+||+|++||++++..+.+.. . .+..++++++++++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 37999999999999999999999999999999987654322 2 235677888999999999
Q ss_pred EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH
Q 027255 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT 109 (226)
Q Consensus 61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~ 109 (226)
+.|+|....++..++ .++.+.+++++ |+.+||+. ....++++.+.
T Consensus 88 iEavpE~l~vK~~lf--~~l~~~~~~~a-IlaSnTS~-l~~s~la~~~~ 132 (321)
T PRK07066 88 QESAPEREALKLELH--ERISRAAKPDA-IIASSTSG-LLPTDFYARAT 132 (321)
T ss_pred EECCcCCHHHHHHHH--HHHHHhCCCCe-EEEECCCc-cCHHHHHHhcC
Confidence 999999999998887 56777787777 66666653 34455666553
No 72
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.49 E-value=2.6e-13 Score=116.56 Aligned_cols=109 Identities=16% Similarity=0.128 Sum_probs=92.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|+|||||+|.||+++|+.|...|++|++|||+++....+ .....+++++++++|+|++++|...+.+.++. .++
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~--~~~ 220 (330)
T PRK12480 147 MTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFD--KAM 220 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHh--HHH
Confidence 589999999999999999999999999999998654322 23456899999999999999999888777763 467
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ 115 (226)
++.+++|.++|+++....-....+.+.+.+..+..
T Consensus 221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~g 255 (330)
T PRK12480 221 FDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLG 255 (330)
T ss_pred HhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeE
Confidence 78899999999999988888889999998765543
No 73
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.48 E-value=9.9e-14 Score=117.14 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=76.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-------------------------CCcccCCHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-------------------------GATVGGSPAEVIK 55 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-------------------------g~~~~~s~~~~~~ 55 (226)
++|+|||+|.||..||..|+.+|++|++||++++.++++.+. ++..+++.+++++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 479999999999999999999999999999999876655321 3345788889999
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEE-ecCCCCHH
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI-DMSTVDHE 99 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv-d~st~~~~ 99 (226)
++|+||.|+|++..++..++ .++.+.++++++|+ ++||..+.
T Consensus 84 ~aDlVieavpe~~~~k~~~~--~~l~~~~~~~~ii~sntSt~~~~ 126 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFY--EELAKVAPEKTIFATNSSTLLPS 126 (287)
T ss_pred CCCEEEEeccCCHHHHHHHH--HHHHhhCCCCCEEEECcccCCHH
Confidence 99999999998655544443 55777787888885 45555554
No 74
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=99.47 E-value=8.2e-13 Score=112.19 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=85.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-------------ccCCHHHHhhhCCeEEEecCCH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------------VGGSPAEVIKKCTITIGMLADP 67 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~~~~~~advvi~~~p~~ 67 (226)
|||+|||+|.||..+|..|+++||+|++|+| +++.+.+.+.|.. ..++.+++.+.+|+||+|+|.
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~- 78 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA- 78 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-
Confidence 8999999999999999999999999999999 8888888776532 134556666889999999987
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEecCCCC
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSG 122 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld~pv~g 122 (226)
.++++++ +.+.+.+.++++||.+.+.- ...+.+.+.+.+. ++.++.++..+
T Consensus 79 ~~~~~~~---~~l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~ 133 (305)
T PRK12921 79 YQLDAAI---PDLKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNG 133 (305)
T ss_pred cCHHHHH---HHHHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECC
Confidence 5677877 67777777788888776542 2233455544332 34455555444
No 75
>PRK13243 glyoxylate reductase; Reviewed
Probab=99.47 E-value=3.7e-13 Score=115.76 Aligned_cols=110 Identities=13% Similarity=0.157 Sum_probs=93.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||+.+|+.|...|++|.+|||++... .....+.. ..++++++++||+|++++|..+..+.++. .+.
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~--~~~ 226 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMIN--EER 226 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccC--HHH
Confidence 479999999999999999999999999999987643 22334554 35899999999999999999888888873 357
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.+++|.++||+++...-..+.+.+.+.+..+.
T Consensus 227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~ 260 (333)
T PRK13243 227 LKLMKPTAILVNTARGKVVDTKALVKALKEGWIA 260 (333)
T ss_pred HhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeE
Confidence 7889999999999999999999999999876544
No 76
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.47 E-value=3.4e-13 Score=114.34 Aligned_cols=106 Identities=15% Similarity=0.289 Sum_probs=90.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|||||+|.||+.+|+.+...|++|++|||+... .+.. ...++++++++||+|++++|..++.+.++. .+
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~--~~ 194 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMIN--SK 194 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcC--HH
Confidence 47999999999999999988889999999998542 2332 256899999999999999999899988873 45
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
.+..+++|.++||+++..+.....+.+.+.+..+.
T Consensus 195 ~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~ 229 (303)
T PRK06436 195 MLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDK 229 (303)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCce
Confidence 67889999999999999999999999999876443
No 77
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.47 E-value=4.6e-13 Score=114.24 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=86.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----C--------------CcccCCHHHHhhhCCeEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----G--------------ATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g--------------~~~~~s~~~~~~~advvi 61 (226)
++|+|||+|.||..||..|+++|++|++||+++++.+.+.+. + +..++++.+++++||+||
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 479999999999999999999999999999999988776541 2 245677888889999999
Q ss_pred EecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEecCCCCChHhhccCcEEEEec
Q 027255 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLEAPVSGSKQPAETGQLVILSA 137 (226)
Q Consensus 62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld~pv~g~~~~a~~g~~~~~~g 137 (226)
+|+|.+..+...++ ..+.+.++++++|+ ++|..+. ..++++.+... ++++.+.|.. +.++.++.
T Consensus 85 ~av~~~~~~~~~v~--~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~~~ig~h~~~p~~~--------~~l~~i~~ 152 (311)
T PRK06130 85 EAVPEKLELKRDVF--ARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPERFVGTHFFTPADV--------IPLVEVVR 152 (311)
T ss_pred EeccCcHHHHHHHH--HHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcccEEEEccCCCCcc--------CceEEEeC
Confidence 99998765444333 44555565555554 3333322 33566655331 4444444422 22455666
Q ss_pred cCC
Q 027255 138 GEK 140 (226)
Q Consensus 138 g~~ 140 (226)
|+.
T Consensus 153 g~~ 155 (311)
T PRK06130 153 GDK 155 (311)
T ss_pred CCC
Confidence 653
No 78
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.45 E-value=7.4e-13 Score=125.12 Aligned_cols=121 Identities=17% Similarity=0.205 Sum_probs=101.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHCCCc--ccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAHGAT--VGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g~~--~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
.+|+|||+|.||..+++.|.++| ++|++|||++++.+.+.+.|+. ...+..++++++|+||+|+|. ..+++++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl-- 80 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVL-- 80 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHH--
Confidence 47999999999999999999998 4899999999998888877764 456678888999999999987 5788888
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE-ecCCCCChH
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL-EAPVSGSKQ 125 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l-d~pv~g~~~ 125 (226)
..+.+.++++.+|+|++++.....+.+.+.+....++|+ ..|++|++.
T Consensus 81 -~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~ 129 (735)
T PRK14806 81 -ADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEK 129 (735)
T ss_pred -HHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCc
Confidence 677777888999999999998888888777655556654 559887763
No 79
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.44 E-value=7.9e-13 Score=113.75 Aligned_cols=109 Identities=11% Similarity=0.130 Sum_probs=89.8
Q ss_pred CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|+|||||+|.||+.+|++|+ ..|.+|++||+++.... ..++....+++++++++|+|++++|.....+.++ + .+
T Consensus 147 ~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li-~-~~ 221 (332)
T PRK08605 147 LKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLF-N-AD 221 (332)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhc-C-HH
Confidence 68999999999999999994 46889999999876431 2234556789999999999999999977776654 2 24
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
.++.+++|.++||+|+........+.+.+.+..+.
T Consensus 222 ~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~ 256 (332)
T PRK08605 222 LFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256 (332)
T ss_pred HHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCee
Confidence 67789999999999999999999999999876554
No 80
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.43 E-value=3.8e-13 Score=113.75 Aligned_cols=117 Identities=21% Similarity=0.334 Sum_probs=84.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH--------------CCC-------------cccCCHHHHh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--------------HGA-------------TVGGSPAEVI 54 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~--------------~g~-------------~~~~s~~~~~ 54 (226)
+|+|||+|.||..||..|+.+|++|++||++++.++...+ .|. ...++. +++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~ 83 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESL 83 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHh
Confidence 7999999999999999999999999999999988764321 121 234444 577
Q ss_pred hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc----CCcEEe-cCCCCC
Q 027255 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK----GGHFLE-APVSGS 123 (226)
Q Consensus 55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~----g~~~ld-~pv~g~ 123 (226)
+++|+||.|+|.+..++..++ .++.+.++++++++..++. ....++++.+... |.+|.+ +|+++.
T Consensus 84 ~~aDlVieav~e~~~~k~~~~--~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~~r~ig~hf~~P~~~~~~ 153 (291)
T PRK06035 84 SDADFIVEAVPEKLDLKRKVF--AELERNVSPETIIASNTSG--IMIAEIATALERKDRFIGMHWFNPAPVMKL 153 (291)
T ss_pred CCCCEEEEcCcCcHHHHHHHH--HHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCcccEEEEecCCCcccCcc
Confidence 899999999999776555554 4566777788888755443 2345566665432 677777 666654
No 81
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=99.43 E-value=7.7e-13 Score=111.62 Aligned_cols=90 Identities=24% Similarity=0.248 Sum_probs=74.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||++||++|...|++|++|+|.....+.....|..+ .++++++++||+|++++|++.+ +.++. +++
T Consensus 17 KtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v-~sl~Eaak~ADVV~llLPd~~t-~~V~~--~ei 92 (335)
T PRK13403 17 KTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEV-MSVSEAVRTAQVVQMLLPDEQQ-AHVYK--AEV 92 (335)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEE-CCHHHHHhcCCEEEEeCCChHH-HHHHH--HHH
Confidence 4799999999999999999999999999988655545555567765 4899999999999999999554 77774 458
Q ss_pred ccccCCCcEEEecC
Q 027255 81 LEQICPGKGYIDMS 94 (226)
Q Consensus 81 ~~~l~~g~ivvd~s 94 (226)
++.+++|++++-.-
T Consensus 93 l~~MK~GaiL~f~h 106 (335)
T PRK13403 93 EENLREGQMLLFSH 106 (335)
T ss_pred HhcCCCCCEEEECC
Confidence 88999999876543
No 82
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.42 E-value=9.5e-13 Score=106.94 Aligned_cols=91 Identities=26% Similarity=0.415 Sum_probs=73.7
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--------CCc---ccCCHHHHhhhCCeEEEecCCHH
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--------GAT---VGGSPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--------g~~---~~~s~~~~~~~advvi~~~p~~~ 68 (226)
|||+||| +|+||+.+++.|+++||+|.+|+|++++.+.+... |.. ...+..++++++|+||+|+|. .
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~ 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence 8999997 89999999999999999999999999988776542 221 234667888999999999987 6
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
++++++ +++.+.+ ++++|||++..
T Consensus 80 ~~~~~l---~~l~~~l-~~~vvI~~~ng 103 (219)
T TIGR01915 80 HVLKTL---ESLRDEL-SGKLVISPVVP 103 (219)
T ss_pred HHHHHH---HHHHHhc-cCCEEEEeccC
Confidence 677777 5565555 45899999875
No 83
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.42 E-value=6.7e-13 Score=104.47 Aligned_cols=111 Identities=18% Similarity=0.221 Sum_probs=90.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.+|+.+|+.+...|.+|++|||+..........+. ...++++++++||+|++++|..+..+.++. ...
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~--~~~ 113 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLIN--AEF 113 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBS--HHH
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeee--eee
Confidence 47999999999999999999999999999999887665666666 455999999999999999997777777662 356
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
+..+++|.++|+++....-....+.+.+++.-+.
T Consensus 114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVDEDALLDALESGKIA 147 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEE
T ss_pred eeccccceEEEeccchhhhhhhHHHHHHhhccCc
Confidence 7889999999999998888888899999876443
No 84
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=99.42 E-value=4.1e-12 Score=107.75 Aligned_cols=91 Identities=20% Similarity=0.285 Sum_probs=75.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----------cCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----------GGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------~~s~~~~~~~advvi~~~p~~~~ 69 (226)
|||+|||+|.||..+|..|.++||+|++|+|++++.+.+.+.|... ..++.++ +.+|+||++++. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 8999999999999999999999999999999988888888777532 4455555 789999999987 56
Q ss_pred HHHHhhcccccccccCCCcEEEecCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+++++ ..+.+.+.++++||.+.+.
T Consensus 79 ~~~~~---~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 79 LPAAL---PSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred HHHHH---HHHhhhcCCCCEEEEecCC
Confidence 78887 7777777777788776654
No 85
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=99.41 E-value=1.1e-12 Score=111.76 Aligned_cols=110 Identities=17% Similarity=0.338 Sum_probs=91.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||+.+|++|...|++|++|||++++...+.. .....++++++++||+|++++|..++.+.++. .+.
T Consensus 137 ~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~--~~~ 212 (312)
T PRK15469 137 FTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIIN--QQL 212 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhH--HHH
Confidence 47999999999999999999999999999998754321111 11235789999999999999999999998884 357
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
+..+++|.++||++....-....+.+.+.+..+.
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhcCCee
Confidence 7889999999999999888888999999876554
No 86
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.41 E-value=1.8e-12 Score=102.72 Aligned_cols=91 Identities=21% Similarity=0.315 Sum_probs=72.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHC-CCc-ccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAH-GAT-VGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~-g~~-~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
|+|+|+|.|+||.++|++|+++||+|.+-+|+.+ +.+...+. +.. ...+..++++.+|+||+++|. .++..++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~--- 77 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVL--- 77 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHH---
Confidence 6899999999999999999999999999866554 44444332 332 345788899999999999999 6777887
Q ss_pred cccccccCCCcEEEecCCC
Q 027255 78 GGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~ 96 (226)
.++...+ .|++|||++.-
T Consensus 78 ~~l~~~~-~~KIvID~tnp 95 (211)
T COG2085 78 AELRDAL-GGKIVIDATNP 95 (211)
T ss_pred HHHHHHh-CCeEEEecCCC
Confidence 6676666 49999999874
No 87
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.40 E-value=6.8e-12 Score=103.39 Aligned_cols=208 Identities=13% Similarity=0.095 Sum_probs=120.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC---e-EEEEcC-CchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF---K-VTVWNR-TLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~---~-V~~~dr-~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~ 74 (226)
|||+|||+|.||++++..|.++|+ + +++++| ++++.+.+.+ .++..+.+.+++++++|+||+++|+ ...++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~ 83 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELL 83 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHH
Confidence 579999999999999999998873 3 778887 4678887776 4777778899999999999999988 5678887
Q ss_pred hcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCc-EEecCCCCChHhhccCcEEEEeccCC--CCCCCcchhh
Q 027255 75 FDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGH-FLEAPVSGSKQPAETGQLVILSAGEK--DLGGIANPMF 150 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~~g~~~~~~gg~~--~~~~~~s~~~ 150 (226)
+++.+.++ +++||+++.. +.+. +.+.+.. +.. ..-.|-+.. ....|...+.++.+. ........++
T Consensus 84 ---~~l~~~~~-~~~vis~~~gi~~~~---l~~~~~~-~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf 153 (245)
T PRK07634 84 ---AELSPLLS-NQLVVTVAAGIGPSY---LEERLPK-GTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLIL 153 (245)
T ss_pred ---HHHHhhcc-CCEEEEECCCCCHHH---HHHHcCC-CCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHH
Confidence 66666664 6788888764 4443 4444432 222 233453332 233443333333221 0011112223
Q ss_pred cccccc--cccCcccC-----CccchHHHHHHHHHHHHHhhcCCCchHH-HHHHHHHHHHHHcCCCCCChHHHHHHH
Q 027255 151 KGKGPT--MLQSNYAP-----AFPLKHQQKDMRLALALGDENAVSMPIA-AAANEAFKKARSLGLGDNDFSAVFEVV 219 (226)
Q Consensus 151 ~~~~~~--~~~~~~~~-----~~~~~~~~kd~~~~~~~a~~~g~~~p~~-~~~~~~~~~a~~~g~g~~d~~~~~~~~ 219 (226)
+..+.. +...++.. +..-..+..=++.+.+.+.+.|++-... +.+.+.+..+.+.-....+...+.+.+
T Consensus 154 ~~~G~~~~~~e~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~l~~~v 230 (245)
T PRK07634 154 KGIGTSQLCTEEEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMISGSASMLEQTQDPANLREQV 230 (245)
T ss_pred HhCCCEEEECHHHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhC
Confidence 322221 11112211 2222344455667777888889986553 334444444433211124566665543
No 88
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.36 E-value=3.7e-12 Score=115.82 Aligned_cols=111 Identities=13% Similarity=0.156 Sum_probs=94.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||+.+|++|...|.+|++||+.... +.....|+..++++++++++||+|++++|..++.+.++. .+.
T Consensus 139 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~--~~~ 215 (525)
T TIGR01327 139 KTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIG--AEE 215 (525)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcC--HHH
Confidence 47999999999999999999999999999986332 233445776667899999999999999999888888872 356
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.+++|.++||++....-....+.+.+.+..+.
T Consensus 216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHVR 249 (525)
T ss_pred HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCee
Confidence 7789999999999999999999999999887664
No 89
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.36 E-value=7.8e-12 Score=103.47 Aligned_cols=91 Identities=26% Similarity=0.392 Sum_probs=78.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCchhHHHHHH-CCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-HGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|||||||+|+||.+|+..|.++| .+|++.||++++.+.+.+ .|+..+.+..++++++|+||+++ .|+.+++++
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~Lav-KPq~~~~vl- 79 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAV-KPQDLEEVL- 79 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEe-ChHhHHHHH-
Confidence 68999999999999999999999 589999999999975544 57766778889999999999999 558899999
Q ss_pred cccccccccCCCcEEEecCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~ 96 (226)
..+.+ ..++++||.....
T Consensus 80 --~~l~~-~~~~~lvISiaAG 97 (266)
T COG0345 80 --SKLKP-LTKDKLVISIAAG 97 (266)
T ss_pred --HHhhc-ccCCCEEEEEeCC
Confidence 77766 6789999997664
No 90
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.36 E-value=1.2e-11 Score=107.38 Aligned_cols=120 Identities=13% Similarity=0.249 Sum_probs=92.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR-NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~-~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
++|+|||+ |.||..+|+.|.+ .|++|++||++.+ ...++.+++++||+||+|+|- ..+.+++ +
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l---~ 69 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALI---E 69 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHH---H
Confidence 58999999 9999999999986 4899999998522 234677889999999999998 5677777 6
Q ss_pred ccccc---cCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH-hhccCcEEEEeccC
Q 027255 79 GVLEQ---ICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ-PAETGQLVILSAGE 139 (226)
Q Consensus 79 ~l~~~---l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~-~a~~g~~~~~~gg~ 139 (226)
++.+. ++++++|+|.+++.....+.+ .+.+..|+.+ |++|++. ..-++...+++.+.
T Consensus 70 ~l~~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~ 131 (370)
T PRK08818 70 EYVALAGGRAAGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEAR 131 (370)
T ss_pred HHhhhhcCCCCCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCC
Confidence 66654 789999999999986655554 2346778888 9999864 33356666766543
No 91
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.35 E-value=5e-12 Score=106.47 Aligned_cols=102 Identities=20% Similarity=0.263 Sum_probs=74.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHH-----------HHHHCC-------------CcccCCHHHHhhhC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCD-----------ELVAHG-------------ATVGGSPAEVIKKC 57 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----------~l~~~g-------------~~~~~s~~~~~~~a 57 (226)
||+|||+|.||.+||..|+++|++|++||+++++++ .+.+.| +..+++.+ .+++|
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~a 83 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDA 83 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 699999999999999999999999999999999875 333444 23355654 47899
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAI 108 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~ 108 (226)
|+||+|+|.+..++..++ ..+.+.++++++++. +|.+.... .+++.+
T Consensus 84 DlVi~av~e~~~~k~~~~--~~l~~~~~~~~il~s-~ts~~~~~-~la~~~ 130 (282)
T PRK05808 84 DLVIEAATENMDLKKKIF--AQLDEIAKPEAILAT-NTSSLSIT-ELAAAT 130 (282)
T ss_pred CeeeecccccHHHHHHHH--HHHHhhCCCCcEEEE-CCCCCCHH-HHHHhh
Confidence 999999988666664444 557777878887733 33322222 556655
No 92
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=99.35 E-value=9.8e-12 Score=104.06 Aligned_cols=116 Identities=18% Similarity=0.222 Sum_probs=90.2
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCeEE-EEcCCchhHHHHHHC-CC-cccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GA-TVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|||||||+|.||+.++++|.+. ++++. +|||++++.+++.+. |. ..+.+++++++++|+|++|+|++.+ .++.
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h-~e~~- 84 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL-RAIV- 84 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH-HHHH-
Confidence 5899999999999999999873 78865 889999998877654 53 5678999999999999999998654 4443
Q ss_pred cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcE-EecCCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHF-LEAPVSGS 123 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~-ld~pv~g~ 123 (226)
. ..++.|+.++..++......+++.+.++++|..+ +...-.++
T Consensus 85 --~---~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~v~sGa~~g 128 (271)
T PRK13302 85 --E---PVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQIIVPTGALLG 128 (271)
T ss_pred --H---HHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEEEEcchHHHh
Confidence 2 4456788777777776777899999999998875 54333333
No 93
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.34 E-value=6.1e-12 Score=114.39 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=95.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.||+.+|++|...|++|++|||+... +.....|+..+ ++++++++||+|++++|..+..+.++. .+.
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~--~~~ 216 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIG--AEE 216 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcC--HHH
Confidence 47999999999999999999999999999996542 33345577666 899999999999999999888888873 357
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc--EEe
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH--FLE 117 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~--~ld 117 (226)
++.+++|.++||++....-....+.+.+.+.-+. .+|
T Consensus 217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLD 255 (526)
T PRK13581 217 LAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALD 255 (526)
T ss_pred HhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEe
Confidence 7889999999999999998999999999876543 355
No 94
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.32 E-value=1.4e-11 Score=103.52 Aligned_cols=92 Identities=17% Similarity=0.377 Sum_probs=74.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCC----CeEEEEcCCc-hhHHHHHHC--CCcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG----FKVTVWNRTL-SKCDELVAH--GATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G----~~V~~~dr~~-~~~~~l~~~--g~~~~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
|+|+|||+|+||.+|++.|.++| ++|++|+|++ ++.+.+... +...+.+..++++++|+||+|+|. +.++++
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp-~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPP-LAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCH-HHHHHH
Confidence 58999999999999999999998 7899999865 445555443 344567888889999999999985 778888
Q ss_pred hhcccccccccCCCcEEEecCCC
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+ .++.+.+.++++||.....
T Consensus 81 l---~~l~~~l~~~~~ivS~~aG 100 (277)
T PRK06928 81 L---KDCAPVLTPDRHVVSIAAG 100 (277)
T ss_pred H---HHHHhhcCCCCEEEEECCC
Confidence 8 7777778788888887764
No 95
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=99.32 E-value=1.1e-11 Score=105.68 Aligned_cols=95 Identities=24% Similarity=0.211 Sum_probs=75.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-HHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+|||+|+||+++|++|...|++|++++++.++... ..+.|+... +++++++++|+|++++|+..+ ..++. ++
T Consensus 18 ktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~~~-~~V~~--~~ 93 (330)
T PRK05479 18 KKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDEVQ-AEVYE--EE 93 (330)
T ss_pred CEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHHHH-HHHHH--HH
Confidence 57999999999999999999999999998887554433 444577655 899999999999999998554 67763 35
Q ss_pred cccccCCCcEEEecCCCCHH
Q 027255 80 VLEQICPGKGYIDMSTVDHE 99 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~ 99 (226)
+.+.+++|++|+-+.-....
T Consensus 94 I~~~Lk~g~iL~~a~G~~i~ 113 (330)
T PRK05479 94 IEPNLKEGAALAFAHGFNIH 113 (330)
T ss_pred HHhcCCCCCEEEECCCCChh
Confidence 77888899988665554443
No 96
>PLN02928 oxidoreductase family protein
Probab=99.30 E-value=1.8e-11 Score=105.81 Aligned_cols=111 Identities=16% Similarity=0.084 Sum_probs=90.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH------------HHCCCcccCCHHHHhhhCCeEEEecCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL------------VAHGATVGGSPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l------------~~~g~~~~~s~~~~~~~advvi~~~p~~~ 68 (226)
++|||||+|.||+.+|+.|...|.+|++|||+..+.... ..... ...++++++++||+|++++|...
T Consensus 160 ktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~ 238 (347)
T PLN02928 160 KTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTK 238 (347)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCCh
Confidence 479999999999999999999999999999974432111 11112 34689999999999999999888
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
..+.++. .+.+..+++|.++||++....-....+.+.+.+.-+.
T Consensus 239 ~T~~li~--~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~ 282 (347)
T PLN02928 239 ETAGIVN--DEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLG 282 (347)
T ss_pred HhhcccC--HHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 8888773 3567889999999999998888888999999876554
No 97
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.29 E-value=1.7e-11 Score=102.06 Aligned_cols=94 Identities=18% Similarity=0.199 Sum_probs=75.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
|||+|||+|+||.+|++.|.++++ ++++++|++++. +...+.++.++++++|+||+|+|. .++++++
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavkp-~~~~~vl-- 74 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVKP-DLAGKVL-- 74 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeCH-HHHHHHH--
Confidence 799999999999999999998872 499999987652 445567888888999999999965 7899999
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHH
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKI 104 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l 104 (226)
.++.+.+.++.+|.+++.++.+..+.+
T Consensus 75 -~~i~~~l~~~~iIS~~aGi~~~~l~~~ 101 (260)
T PTZ00431 75 -LEIKPYLGSKLLISICGGLNLKTLEEM 101 (260)
T ss_pred -HHHHhhccCCEEEEEeCCccHHHHHHH
Confidence 777777766667777777877666543
No 98
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=99.29 E-value=3.4e-11 Score=100.55 Aligned_cols=111 Identities=23% Similarity=0.374 Sum_probs=86.4
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
|||||||+|.||..+++.+.+. +++ +.+|||++++.+.+.+. +...+.+.++++.++|+|++|+|. ....+..
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~-- 78 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVV-- 78 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHH--
Confidence 7999999999999999999876 466 55899999998887654 677788999988899999999976 4455554
Q ss_pred ccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCc-EEec
Q 027255 77 KGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGH-FLEA 118 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~-~ld~ 118 (226)
. ..++.|+.++.+|+ .++...+++.+.++++|.. +++.
T Consensus 79 -~---~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v~s 120 (265)
T PRK13304 79 -P---KSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYLPS 120 (265)
T ss_pred -H---HHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEEeC
Confidence 2 33456666666666 3677788999999888865 4544
No 99
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.28 E-value=1.7e-11 Score=106.75 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=88.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHH----HHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPA----AALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~----~~~~v~~~ 76 (226)
++|||||+|+||+.+|+.+...|++|.+||+..... .+.....++++++++||+|++++|... ..+.++ +
T Consensus 117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li-~ 190 (381)
T PRK00257 117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLL-D 190 (381)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccC-C
Confidence 479999999999999999999999999999864321 122335689999999999999999754 344444 3
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC--cEEec
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--HFLEA 118 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~--~~ld~ 118 (226)
.+.+..+++|.++||++....-....+.+.+.+..+ ..+|.
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV 233 (381)
T PRK00257 191 -EAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDV 233 (381)
T ss_pred -HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeC
Confidence 246678999999999999999999999999977644 34565
No 100
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=99.28 E-value=2.5e-11 Score=103.76 Aligned_cols=111 Identities=20% Similarity=0.200 Sum_probs=93.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.+|+.+|+.+..-|.+|.+||+...+- .....+.....++++++++||+|++.+|-.+..+.++. .+.
T Consensus 143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~--~~~ 219 (324)
T COG0111 143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLIN--AEE 219 (324)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccC--HHH
Confidence 479999999999999999999999999999943332 22234667778999999999999999999888988883 345
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
+..+++|.++|+++....-+...|.+.+.+..+.
T Consensus 220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~ 253 (324)
T COG0111 220 LAKMKPGAILINAARGGVVDEDALLAALDSGKIA 253 (324)
T ss_pred HhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc
Confidence 6789999999999999888888999998775443
No 101
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=99.26 E-value=4.3e-11 Score=102.01 Aligned_cols=94 Identities=21% Similarity=0.253 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcC-CchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNR-TLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+|||+|+||.++|++|...|++|+++++ ++++.+.+.+.|+... +..++++++|+|++++|+..+...++ ++
T Consensus 4 kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~---~e 79 (314)
T TIGR00465 4 KTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYE---AE 79 (314)
T ss_pred CEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHH---HH
Confidence 5899999999999999999999999887654 4456666777788654 58889999999999999864666555 56
Q ss_pred cccccCCCcEEEecCCCCH
Q 027255 80 VLEQICPGKGYIDMSTVDH 98 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~ 98 (226)
+.+.++++.+|.-+.-.+.
T Consensus 80 i~~~l~~g~iVs~aaG~~i 98 (314)
T TIGR00465 80 IQPLLKEGKTLGFSHGFNI 98 (314)
T ss_pred HHhhCCCCcEEEEeCCccH
Confidence 7777877764433333443
No 102
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=99.26 E-value=2.6e-11 Score=95.56 Aligned_cols=93 Identities=17% Similarity=0.287 Sum_probs=69.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----------C-------------CCcccCCHHHHhhhC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----------H-------------GATVGGSPAEVIKKC 57 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~~~~~~a 57 (226)
||+|||+|.||..||..++.+|++|++||++++..+...+ . .+..+++++++. ++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 7999999999999999999999999999999997654321 1 245678888888 99
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~ 97 (226)
|+||.++|.+-.++.-+| ..+.+.+++++++...|+.-
T Consensus 80 dlViEai~E~l~~K~~~~--~~l~~~~~~~~ilasnTSsl 117 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELF--AELDEICPPDTILASNTSSL 117 (180)
T ss_dssp SEEEE-S-SSHHHHHHHH--HHHHCCS-TTSEEEE--SSS
T ss_pred heehhhccccHHHHHHHH--HHHHHHhCCCceEEecCCCC
Confidence 999999999888777665 55777788888877665543
No 103
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=99.24 E-value=7.9e-11 Score=100.64 Aligned_cols=110 Identities=18% Similarity=0.206 Sum_probs=93.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
+++||||+|.+|+++|+++..-|.+|..|||++. .+.-...+....+ ++++++++|+|++.+|-..+.+.++. ...
T Consensus 147 ktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin--~~~ 222 (324)
T COG1052 147 KTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLIN--AEE 222 (324)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcC--HHH
Confidence 5899999999999999999977889999999876 3333334466655 99999999999999999899888873 356
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.+++|.++|+++....-+.+.+.+.+++..+.
T Consensus 223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~ 256 (324)
T COG1052 223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKIA 256 (324)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhCCcc
Confidence 7889999999999999999999999999886544
No 104
>PRK06141 ornithine cyclodeaminase; Validated
Probab=99.24 E-value=1.7e-11 Score=104.78 Aligned_cols=108 Identities=17% Similarity=0.224 Sum_probs=85.9
Q ss_pred eEEEEecChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
+|+|||+|.||..+++.+.. ...+|++|||++++.+.+.+. | +.++.+++++++++|+|++++|.. +.+
T Consensus 127 ~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pv 203 (314)
T PRK06141 127 RLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPL 203 (314)
T ss_pred eEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCE
Confidence 79999999999999986654 447899999999999888764 4 556789999999999998888764 333
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+. .+.+++|+ +|++.+..+...+++...+.+++..|+|-
T Consensus 204 l~-----~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD~ 242 (314)
T PRK06141 204 VR-----GEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVDT 242 (314)
T ss_pred ec-----HHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEcC
Confidence 31 14567888 77888777778888888887788788886
No 105
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.23 E-value=5.9e-11 Score=104.74 Aligned_cols=108 Identities=17% Similarity=0.167 Sum_probs=91.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.+|+.+|+.+...|.+|.+||+++.. ...++....++++++++||+|++++|..+..+.++. .+.
T Consensus 152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~--~~~ 225 (409)
T PRK11790 152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIG--AEE 225 (409)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccC--HHH
Confidence 47999999999999999999999999999987432 112445567899999999999999998888888773 346
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
+..+++|.++|+++....-....+.+.+.+..+.
T Consensus 226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~ 259 (409)
T PRK11790 226 LALMKPGAILINASRGTVVDIDALADALKSGHLA 259 (409)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCce
Confidence 7889999999999999998999999999887554
No 106
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=99.23 E-value=7.2e-11 Score=99.57 Aligned_cols=109 Identities=21% Similarity=0.216 Sum_probs=83.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
.+|+|||+|.||+.+|+.|...|.+|++++|++++.+.+.+.|.... .++.+.++++|+||.++|..-..+
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~------- 224 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTA------- 224 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCH-------
Confidence 37999999999999999999999999999999988877776676543 356778889999999998742112
Q ss_pred ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
..++.++++.++||+++..-.+. + +.+++.|+..+-+|
T Consensus 225 ~~l~~~k~~aliIDlas~Pg~td--f-~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 225 DVLSKLPKHAVIIDLASKPGGTD--F-EYAKKRGIKALLAP 262 (287)
T ss_pred HHHhcCCCCeEEEEeCcCCCCCC--H-HHHHHCCCEEEEeC
Confidence 23466788999999998543322 2 45577888877655
No 107
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=99.21 E-value=1.2e-10 Score=99.87 Aligned_cols=110 Identities=11% Similarity=0.096 Sum_probs=90.3
Q ss_pred CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|||||+|.+|+.+|+.+. .-|.+|..|||.... +.....++.. .++++++++||+|++++|-.+..+.++. ..
T Consensus 146 ktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~--~~ 221 (323)
T PRK15409 146 KTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFG--AE 221 (323)
T ss_pred CEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccC--HH
Confidence 47999999999999999997 778899999987432 2223345544 4899999999999999999888888773 34
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
.+..+++|.++|+++....-....+.+.+.+.-+.
T Consensus 222 ~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 256 (323)
T PRK15409 222 QFAKMKSSAIFINAGRGPVVDENALIAALQKGEIH 256 (323)
T ss_pred HHhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 67889999999999999888889999999876543
No 108
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=99.21 E-value=6.3e-11 Score=90.33 Aligned_cols=91 Identities=26% Similarity=0.311 Sum_probs=68.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+|||.|+.|.+.|.||.+.|++|++..|..+ ..++..+.|.++ .+..|+++.+|+|++.+|+ +...+++. +.
T Consensus 5 k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v-~~~~eAv~~aDvV~~L~PD-~~q~~vy~--~~ 80 (165)
T PF07991_consen 5 KTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEV-MSVAEAVKKADVVMLLLPD-EVQPEVYE--EE 80 (165)
T ss_dssp SEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-EC-CEHHHHHHC-SEEEE-S-H-HHHHHHHH--HH
T ss_pred CEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCee-ccHHHHHhhCCEEEEeCCh-HHHHHHHH--HH
Confidence 4799999999999999999999999999988877 666777778876 4799999999999999998 55556653 56
Q ss_pred cccccCCCcEEEecCC
Q 027255 80 VLEQICPGKGYIDMST 95 (226)
Q Consensus 80 l~~~l~~g~ivvd~st 95 (226)
+.+.+++|+.++-..-
T Consensus 81 I~p~l~~G~~L~fahG 96 (165)
T PF07991_consen 81 IAPNLKPGATLVFAHG 96 (165)
T ss_dssp HHHHS-TT-EEEESSS
T ss_pred HHhhCCCCCEEEeCCc
Confidence 8899999998876543
No 109
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.18 E-value=9.1e-11 Score=98.64 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=64.4
Q ss_pred CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+|||.| .||.+||.+|.++|++|++|++... ++++++++||+||+|++.+..++..+
T Consensus 160 k~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~----- 220 (301)
T PRK14194 160 KHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW----- 220 (301)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh-----
Confidence 479999996 9999999999999999999987643 78899999999999999987666554
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+++|.+|||+++..
T Consensus 221 ----ik~GaiVIDvgin~ 234 (301)
T PRK14194 221 ----LKPGAVVIDVGINR 234 (301)
T ss_pred ----ccCCcEEEEecccc
Confidence 67999999998653
No 110
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=99.17 E-value=4.6e-10 Score=82.23 Aligned_cols=108 Identities=20% Similarity=0.299 Sum_probs=86.5
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCeE-EEEcCCchhHHHHHH-CCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFKV-TVWNRTLSKCDELVA-HGATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~ 74 (226)
|||+|||+|.+|+.....+.+. ++++ .++|+++++.+.+.+ .|+..++|.+++++ +.|+|++++|+..+.+.+.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~ 80 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAK 80 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHH
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHH
Confidence 6899999999999999999876 4564 478999999888754 58889999999998 6899999999977776654
Q ss_pred hcccccccccCCCc-EEEecC-CCCHHHHHHHHHHHHhcCCcE
Q 027255 75 FDKGGVLEQICPGK-GYIDMS-TVDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 75 ~~~~~l~~~l~~g~-ivvd~s-t~~~~~~~~l~~~~~~~g~~~ 115 (226)
..++.|. ++++-- ..++++.+++.+.++++|..+
T Consensus 81 -------~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 81 -------KALEAGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp -------HHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred -------HHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 3344555 455543 358999999999999988764
No 111
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.17 E-value=1.5e-10 Score=100.65 Aligned_cols=111 Identities=15% Similarity=0.175 Sum_probs=86.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH----HHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA----ALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~----~~~v~~~ 76 (226)
++|||||+|+||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++ +
T Consensus 117 ktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li-~ 190 (378)
T PRK15438 117 RTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA-D 190 (378)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCccccccccc-C
Confidence 479999999999999999999999999999753321 111 1346899999999999999995442 44444 2
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCC--cEEec
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGG--HFLEA 118 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~--~~ld~ 118 (226)
.+.+..+++|.++||++....-....+.+.+++..+ ..+|.
T Consensus 191 -~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV 233 (378)
T PRK15438 191 -EKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDV 233 (378)
T ss_pred -HHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEec
Confidence 345678999999999999988888999999877643 34565
No 112
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=99.16 E-value=1.4e-10 Score=98.89 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=89.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.+|+.+|+.+..-|.+|..|||+.... ..+.. ..++++++++||+|++++|-.+..+.++. ...
T Consensus 146 ktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~--~~~ 218 (311)
T PRK08410 146 KKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIA--YKE 218 (311)
T ss_pred CEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccC--HHH
Confidence 479999999999999999999999999999974321 12333 45899999999999999998888888773 356
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.+++|.++|+++....-....+.+.+++..+.
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE
Confidence 7889999999999999888889999999875444
No 113
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.16 E-value=2.5e-10 Score=91.44 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=103.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~ 78 (226)
|+|+|+|+|+||+.+|++|.+.|++|+++|+++++.+.+.+. +....++ .++.. ++|+++.|........+.+
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~---- 103 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI---- 103 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH----
Confidence 579999999999999999999999999999999998888766 7665544 44543 7999997765432223333
Q ss_pred ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC--CCChHhhccCcEEEEeccCCCCCCCcchhhcccccc
Q 027255 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV--SGSKQPAETGQLVILSAGEKDLGGIANPMFKGKGPT 156 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv--~g~~~~a~~g~~~~~~gg~~~~~~~~s~~~~~~~~~ 156 (226)
+.+ +.++|++..+... +..+-.+.++++|+.|++--+ +|+. .+ .+++...
T Consensus 104 ---~~l-~~~~v~~~AN~~~-~~~~~~~~L~~~Gi~~~Pd~~~NaGGv----------~~-----------~~~e~~~-- 155 (200)
T cd01075 104 ---PQL-KAKAIAGAANNQL-ADPRHGQMLHERGILYAPDYVVNAGGL----------IN-----------VADELYG-- 155 (200)
T ss_pred ---HHc-CCCEEEECCcCcc-CCHhHHHHHHHCCCEEeCceeeeCcCc----------ee-----------ehhHHhC--
Confidence 334 3567777766432 215667888999999987432 2321 11 1111111
Q ss_pred cccCccc-CCccchHHHHHHHHHHHHHhhcCCCchHHH
Q 027255 157 MLQSNYA-PAFPLKHQQKDMRLALALGDENAVSMPIAA 193 (226)
Q Consensus 157 ~~~~~~~-~~~~~~~~~kd~~~~~~~a~~~g~~~p~~~ 193 (226)
+... ..-.++...+.+..+++.+++.++++....
T Consensus 156 ---~~~~~~~~~~~~~~~~~~~v~~~a~~~~~~~~~aA 190 (200)
T cd01075 156 ---GNEARVLAKVEAIYDTLLEIFAQAKQDGITTLEAA 190 (200)
T ss_pred ---CcHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHH
Confidence 0010 011344557888888999999988765443
No 114
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.13 E-value=1.5e-10 Score=98.87 Aligned_cols=105 Identities=18% Similarity=0.209 Sum_probs=80.4
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCchh-------HHH-----------HHHCC-------------CcccCC--HHHHhhhC
Q 027255 11 MGKAISMNLLRNGFKVTVWNRTLSK-------CDE-----------LVAHG-------------ATVGGS--PAEVIKKC 57 (226)
Q Consensus 11 mG~~~A~~l~~~G~~V~~~dr~~~~-------~~~-----------l~~~g-------------~~~~~s--~~~~~~~a 57 (226)
||..||..++.+|++|++||++++. +++ +.+.| ++.+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 111 12222 333433 66888999
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH----hcCCcEEecC
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT----SKGGHFLEAP 119 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~----~~g~~~ld~p 119 (226)
|+||.|+|.+..++..+|++ +.+.+++++++ +|++++....++++.+. -.|.+|++.|
T Consensus 81 D~ViEav~E~~~~K~~~f~~--l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp 142 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRW--LGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPA 142 (314)
T ss_pred CEEEECCcCCHHHHHHHHHH--HHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCcc
Confidence 99999999999999998854 77788888888 55566666677888773 3488999998
No 115
>PRK06932 glycerate dehydrogenase; Provisional
Probab=99.12 E-value=4.4e-10 Score=96.00 Aligned_cols=106 Identities=14% Similarity=0.063 Sum_probs=88.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.+|+.+|+.+..-|.+|+.|+|.... .. .. ...++++++++||+|++++|-.+..+.++. .+.
T Consensus 148 ktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~--~~~ 219 (314)
T PRK06932 148 STLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLIN--AET 219 (314)
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccC--HHH
Confidence 47999999999999999999999999999986431 11 11 135899999999999999998888888773 356
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.+++|.++|+++....-....+.+.+.+..+.
T Consensus 220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~ 253 (314)
T PRK06932 220 LALMKPTAFLINTGRGPLVDEQALLDALENGKIA 253 (314)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCcc
Confidence 7889999999999999888888999999876554
No 116
>PRK06487 glycerate dehydrogenase; Provisional
Probab=99.11 E-value=4.6e-10 Score=96.05 Aligned_cols=105 Identities=14% Similarity=0.074 Sum_probs=87.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||||+|.+|+.+|+.+...|.+|.+|||.... . ... ..++++++++||+|++++|-.+..+.++. ...
T Consensus 149 ktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~-----~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~--~~~ 219 (317)
T PRK06487 149 KTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A-----RPD-RLPLDELLPQVDALTLHCPLTEHTRHLIG--ARE 219 (317)
T ss_pred CEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c-----ccc-ccCHHHHHHhCCEEEECCCCChHHhcCcC--HHH
Confidence 37999999999999999999999999999986431 1 111 34899999999999999998888888773 356
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.+++|.++|+++....-....+.+.+.+.-+.
T Consensus 220 ~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~ 253 (317)
T PRK06487 220 LALMKPGALLINTARGGLVDEQALADALRSGHLG 253 (317)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCee
Confidence 7889999999999998888888999999876554
No 117
>PLN02306 hydroxypyruvate reductase
Probab=99.09 E-value=9e-10 Score=96.37 Aligned_cols=112 Identities=13% Similarity=0.122 Sum_probs=88.9
Q ss_pred CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchh-HHHH-HHCC------------CcccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSK-CDEL-VAHG------------ATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~-~~~l-~~~g------------~~~~~s~~~~~~~advvi~~~p 65 (226)
++|||||+|.+|+.+|+.+. ..|.+|..||+++.. .+.+ ...+ .....++++++++||+|++++|
T Consensus 166 ktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~P 245 (386)
T PLN02306 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPV 245 (386)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCC
Confidence 47999999999999999986 679999999998642 1211 1111 1234689999999999999999
Q ss_pred CHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 66 DPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
-....+.++. ...++.+++|.++|+++....-....+.+.+.+..+.
T Consensus 246 lt~~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~ 292 (386)
T PLN02306 246 LDKTTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMF 292 (386)
T ss_pred CChhhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCee
Confidence 8888888873 3567889999999999998888888899998776443
No 118
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.09 E-value=1.1e-09 Score=91.17 Aligned_cols=120 Identities=19% Similarity=0.311 Sum_probs=89.6
Q ss_pred HHHHHHhCC--CeEEEEcCCchhHHHHHHCCCcccC-CHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEE
Q 027255 15 ISMNLLRNG--FKVTVWNRTLSKCDELVAHGATVGG-SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYI 91 (226)
Q Consensus 15 ~A~~l~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~-s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivv 91 (226)
+|+.|.++| ++|++||++++..+...+.|+.... +..++++++|+||+|+|- ..+..++ +.+.+.++++++|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l---~~~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL---EEIAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH---HHHHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH---HHhhhhcCCCcEEE
Confidence 588899998 7899999999998888888865432 226789999999999988 5677888 78888899999999
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh--------HhhccCcEEEEeccC
Q 027255 92 DMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK--------QPAETGQLVILSAGE 139 (226)
Q Consensus 92 d~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~--------~~a~~g~~~~~~gg~ 139 (226)
|.+++.-...+.+.+.+. .+..|+.+ |++|++ ..--+|...+++-++
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~ 132 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGE 132 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECT
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCC
Confidence 999999888888777665 68888888 888882 222257777777554
No 119
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=99.07 E-value=4e-10 Score=94.36 Aligned_cols=112 Identities=23% Similarity=0.256 Sum_probs=82.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCcccCCHHHH-hhhCCeEEEecCCHH--HHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GATVGGSPAEV-IKKCTITIGMLADPA--AALSV 73 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~~~-~~~advvi~~~p~~~--~~~~v 73 (226)
+++.|+|+|.+|++++..|++.|++|+++||++++.+.+.+. +.....+..+. ..++|+||.|+|..- ...++
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~ 197 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEP 197 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCC
Confidence 368999999999999999999999999999999988777653 32222333333 357999999998741 12111
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.+ -...++++.+++|+++..+.+ .+.+.++++|+.++|+
T Consensus 198 ~~----~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vdG 236 (270)
T TIGR00507 198 PV----PAEKLKEGMVVYDMVYNPGET--PFLAEAKSLGTKTIDG 236 (270)
T ss_pred CC----CHHHcCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeCC
Confidence 10 123467899999999876655 5888889999998876
No 120
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=99.07 E-value=1.4e-09 Score=92.90 Aligned_cols=101 Identities=18% Similarity=0.223 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--------------~~s~~~~~~~advvi~~~p~ 66 (226)
|||+|||+|.||..+|..|.++||+|++|.|++. +.+...|... ..++ +....+|+||+|++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vilavK~ 82 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSA-EDMPPCDWVLVGLKT 82 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcch-hhcCCCCEEEEEecC
Confidence 7999999999999999999999999999999863 4455544321 1222 345678999999987
Q ss_pred HHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHH
Q 027255 67 PAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAIT 109 (226)
Q Consensus 67 ~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~ 109 (226)
.++.+++ +.+.+.+.++.+|+.+...- ...+.+.+.+.
T Consensus 83 -~~~~~~~---~~l~~~~~~~~~iv~lqNG~-~~~e~l~~~~~ 120 (313)
T PRK06249 83 -TANALLA---PLIPQVAAPDAKVLLLQNGL-GVEEQLREILP 120 (313)
T ss_pred -CChHhHH---HHHhhhcCCCCEEEEecCCC-CcHHHHHHHCC
Confidence 4566666 56667777777777765542 23344555543
No 121
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=99.05 E-value=1.1e-09 Score=92.83 Aligned_cols=108 Identities=23% Similarity=0.225 Sum_probs=82.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
+|++|||.|.+|..++..|...|.+|+++||++++.+.....|.... .++.+.+.++|+||.++|..-..++
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~------ 226 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE------ 226 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH------
Confidence 47999999999999999999999999999999988777777787654 3567788899999999986322222
Q ss_pred ccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 79 GVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.++.++++.+|||+++....+. + +.++++|+..+-+
T Consensus 227 -~l~~~~~g~vIIDla~~pggtd--~-~~a~~~Gv~~~~~ 262 (296)
T PRK08306 227 -VLSKMPPEALIIDLASKPGGTD--F-EYAEKRGIKALLA 262 (296)
T ss_pred -HHHcCCCCcEEEEEccCCCCcC--e-eehhhCCeEEEEE
Confidence 3466789999999987543322 1 3445667766543
No 122
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=99.04 E-value=1e-09 Score=92.47 Aligned_cols=73 Identities=23% Similarity=0.338 Sum_probs=63.0
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEc-CCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWN-RTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
++|+||| .|.||.+||.+|.++|++|++|+ |++ +++++++++|+|++|++.+..++..+
T Consensus 159 k~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~---- 219 (296)
T PRK14188 159 LNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW---- 219 (296)
T ss_pred CEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe----
Confidence 4799999 99999999999999999999995 765 36888999999999999987665543
Q ss_pred ccccccCCCcEEEecCCCC
Q 027255 79 GVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st~~ 97 (226)
+++|++|||++...
T Consensus 220 -----lk~GavVIDvGin~ 233 (296)
T PRK14188 220 -----IKPGATVIDVGINR 233 (296)
T ss_pred -----ecCCCEEEEcCCcc
Confidence 67999999998754
No 123
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.03 E-value=2.4e-09 Score=90.05 Aligned_cols=119 Identities=13% Similarity=0.172 Sum_probs=92.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-HCCCcccCCHHHHhh-hCCeEEEecCCHHHHHHHhhcccc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-AHGATVGGSPAEVIK-KCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~~~~~-~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
+|||||.|+||+-+|.-|.++||.|.+++|+. .+.++ ..|....+.+.++++ ..|+|++|+. ...++.++ ..
T Consensus 54 ~IaIIGfGnmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekil---at 127 (480)
T KOG2380|consen 54 VIAIIGFGNMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKIL---AT 127 (480)
T ss_pred EEEEEecCcHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHH---Hh
Confidence 69999999999999999999999999999976 44444 458777888888876 5899999994 46777777 33
Q ss_pred ccc-ccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChHhh
Q 027255 80 VLE-QICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQPA 127 (226)
Q Consensus 80 l~~-~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~~a 127 (226)
+-. .++.|++++|..+...-....+.+.+.+ .+..+-+ |++|+...-
T Consensus 128 ypfqrlrrgtlfvdvlSvKefek~lfekYLPk-dfDIlctHpmfGPksvn 176 (480)
T KOG2380|consen 128 YPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK-DFDILCTHPMFGPKSVN 176 (480)
T ss_pred cCchhhccceeEeeeeecchhHHHHHHHhCcc-ccceEeecCCcCCCcCC
Confidence 333 3789999999998876666667776654 6666655 888877433
No 124
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.03 E-value=1.7e-09 Score=92.01 Aligned_cols=108 Identities=19% Similarity=0.165 Sum_probs=92.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|||+|+|.+|+.+|++|...|..+.-+.|++...+...+.+.. ..+..+.+.++|+|++|+|.....+.++. ..+
T Consensus 163 K~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liN--k~~ 239 (336)
T KOG0069|consen 163 KTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLIN--KKF 239 (336)
T ss_pred CEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhh--HHH
Confidence 479999999999999999999884455567888777777776666 56789999999999999999999999884 357
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~ 111 (226)
+..+++|.++|+++....-..+.+.+.+++.
T Consensus 240 ~~~mk~g~vlVN~aRG~iide~~l~eaL~sG 270 (336)
T KOG0069|consen 240 IEKMKDGAVLVNTARGAIIDEEALVEALKSG 270 (336)
T ss_pred HHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence 8899999999999999888888888888763
No 125
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=99.00 E-value=1.5e-09 Score=91.70 Aligned_cols=96 Identities=17% Similarity=0.249 Sum_probs=71.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~ 56 (226)
++|+|||.|.||+.||..++..|++|+++|++++.+++.. +.| ++...++. .+++
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~ 82 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKD 82 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhcc
Confidence 5899999999999999999998899999999977655432 222 23344444 6789
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCC-CCHH
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST-VDHE 99 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~ 99 (226)
||+|+.++|.+..++.-+| ..+-+..++++++-..|+ .++.
T Consensus 83 ~DlVIEAv~E~levK~~vf--~~l~~~~~~~aIlASNTSsl~it 124 (307)
T COG1250 83 ADLVIEAVVEDLELKKQVF--AELEALAKPDAILASNTSSLSIT 124 (307)
T ss_pred CCEEEEeccccHHHHHHHH--HHHHhhcCCCcEEeeccCCCCHH
Confidence 9999999999888887776 446666767777654333 4443
No 126
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.92 E-value=1.1e-08 Score=87.23 Aligned_cols=105 Identities=15% Similarity=0.243 Sum_probs=80.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc------------cCCHHHHhhhCCeEEEecCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV------------GGSPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~------------~~s~~~~~~~advvi~~~p~~~ 68 (226)
|||.|+|+|.||+-++..|.++|++|+++.|++. .+++++.|..+ .....+....+|+||+++-. -
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~ 78 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-Y 78 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-c
Confidence 8999999999999999999999999999999876 88888876432 22233445579999999955 7
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~ 111 (226)
++++++ ..+.+.+.+.+.|+-+-+.-.. .+.+.+...+.
T Consensus 79 q~~~al---~~l~~~~~~~t~vl~lqNG~g~-~e~l~~~~~~~ 117 (307)
T COG1893 79 QLEEAL---PSLAPLLGPNTVVLFLQNGLGH-EEELRKILPKE 117 (307)
T ss_pred cHHHHH---HHhhhcCCCCcEEEEEeCCCcH-HHHHHHhCCcc
Confidence 788888 7888889888877766554332 22566655554
No 127
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=98.91 E-value=6.9e-08 Score=82.29 Aligned_cols=92 Identities=18% Similarity=0.224 Sum_probs=70.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCccc-----------CCHHHHhhhCCeEEEecCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG-----------GSPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~-----------~s~~~~~~~advvi~~~p~~~ 68 (226)
|||+|||+|.||.-+|..|.+.|++|++++|+.++++.+++. |+... ....+.....|+||+|+-. .
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~-~ 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKA-Y 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCH-H
Confidence 899999999999999999999999999999988888888754 43221 1111223468999999955 6
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
++.+++ ..+.+.+.+++.||-+-+.
T Consensus 82 ~~~~al---~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 82 DAEPAV---ASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred hHHHHH---HHHHhhCCCCCEEEEEeCC
Confidence 677887 7788888888877766553
No 128
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.87 E-value=8.6e-09 Score=97.07 Aligned_cols=92 Identities=15% Similarity=0.188 Sum_probs=72.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-----------HHCC-------------CcccCCHHHHhhhC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-----------VAHG-------------ATVGGSPAEVIKKC 57 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~~~~~~a 57 (226)
+|+|||+|.||..||..++.+||+|++||++++.+++. .+.| ++++.+. +.+++|
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~a 393 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERV 393 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCC
Confidence 79999999999999999999999999999999876542 1122 4445666 456899
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
|+||.++|.+-.++.-+| .++.+.+++++++...|++
T Consensus 394 DlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasNTSs 430 (715)
T PRK11730 394 DVVVEAVVENPKVKAAVL--AEVEQKVREDTILASNTST 430 (715)
T ss_pred CEEEecccCcHHHHHHHH--HHHHhhCCCCcEEEEcCCC
Confidence 999999999888887776 4576778788877654444
No 129
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.87 E-value=1.7e-08 Score=87.85 Aligned_cols=117 Identities=20% Similarity=0.267 Sum_probs=93.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHCC---C-------cccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAHG---A-------TVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~g---~-------~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
|+|.|||+|.+|+.+|..|+++| ++|++.||+++++.++.... + .-...+.+++++.|+||.|.|....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~ 81 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD 81 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence 68999999999999999999999 99999999999999987653 2 1233566788899999999988544
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEecCCCCChH
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEAPVSGSKQ 125 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~ 125 (226)
. .++ ..+++.|..++|+|-..+.. .++.+.+.+.|+. ++++.+.-|..
T Consensus 82 ~-~i~------ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 82 L-TIL------KACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred H-HHH------HHHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 4 443 35667899999999887776 8888999998876 46666655543
No 130
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.85 E-value=8.7e-09 Score=86.15 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=62.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+|||. |.||.+||.+|.++|+.|++|+.. +.++++.+++||+||++++.+..++..+
T Consensus 159 k~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~----- 219 (284)
T PRK14179 159 KHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF----- 219 (284)
T ss_pred CEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH-----
Confidence 47999999 999999999999999999999422 1268889999999999999987766543
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+++|.++||++...
T Consensus 220 ----ik~GavVIDvgin~ 233 (284)
T PRK14179 220 ----VKEGAVVIDVGMNR 233 (284)
T ss_pred ----ccCCcEEEEeccee
Confidence 67999999998754
No 131
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=98.85 E-value=7.2e-09 Score=89.00 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=77.9
Q ss_pred eEEEEecChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
++||||+|.||...++.+.. ...+|++|||++++.+.+.+. | +..+.+++++++++|+|++|+|+.+ .+
T Consensus 130 ~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~---P~ 206 (325)
T TIGR02371 130 VLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRK---PV 206 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCC---cE
Confidence 69999999999998777764 346899999999998877652 5 4568899999999999999998743 22
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+. .+.+++|..|...++..|... ++...+-++.-.|+|.
T Consensus 207 ~~-----~~~l~~g~~v~~vGs~~p~~~-Eld~~~l~~a~v~vD~ 245 (325)
T TIGR02371 207 VK-----ADWVSEGTHINAIGADAPGKQ-ELDPEILKNAKIFVDD 245 (325)
T ss_pred ec-----HHHcCCCCEEEecCCCCcccc-cCCHHHHhcCcEEECC
Confidence 21 134689999988888776433 2332222223345664
No 132
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.84 E-value=1.3e-08 Score=95.89 Aligned_cols=93 Identities=16% Similarity=0.175 Sum_probs=73.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKK 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~ 56 (226)
.+|+|||+|.||..||..++.+|++|+++|++++.+++.. +.| ++.+.+. +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 3799999999999999999999999999999998766422 112 3445555 45689
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
||+||.++|.+-.++.-+| .++-+.+++++++...|+.
T Consensus 393 aDlViEav~E~l~~K~~vf--~~l~~~~~~~~ilasnTS~ 430 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVL--AEVEQHVREDAILASNTST 430 (714)
T ss_pred CCEEEEcCcccHHHHHHHH--HHHHhhCCCCcEEEECCCC
Confidence 9999999999888887776 5577778788887665444
No 133
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.84 E-value=9.8e-09 Score=96.49 Aligned_cols=93 Identities=16% Similarity=0.167 Sum_probs=71.4
Q ss_pred CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHH-----------HC-------------CCcccCCHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AH-------------GATVGGSPAEVIK 55 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~~~~~ 55 (226)
.+|+|||+|.||..||..++ .+|++|++||++++..++.. +. .++.+++. +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 37999999999999999998 58999999999998655421 11 13455666 4678
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+||+||.++|.+-.++.-+| .++-+.+++++++...|+.
T Consensus 384 ~adlViEav~E~l~~K~~v~--~~l~~~~~~~~ilasnTS~ 422 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMV--KDIEQECAAHTIFASNTSS 422 (699)
T ss_pred cCCEEEEeccccHHHHHHHH--HHHHhhCCCCcEEEeCCCC
Confidence 99999999999888887665 5566778788777654443
No 134
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.83 E-value=8.9e-09 Score=96.91 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=72.7
Q ss_pred CeEEEEecChhHHHHHHHHH-hCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLL-RNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIK 55 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~-~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~ 55 (226)
.+|+|||+|.||..||..++ .+|++|++||++++..++.. +.| ++.+++. +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 37999999999999999999 88999999999988655421 112 3445565 5678
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+||+||.++|.+-.++.-+| .++-+.+++++++...|+.
T Consensus 389 ~aDlViEav~E~~~~K~~v~--~~le~~~~~~~ilasnTS~ 427 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMV--AEVEQNCAPHTIFASNTSS 427 (708)
T ss_pred cCCEEeecccccHHHHHHHH--HHHHhhCCCCcEEEECCCC
Confidence 99999999999888887766 5576778888888765544
No 135
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=98.82 E-value=3.4e-08 Score=82.54 Aligned_cols=121 Identities=17% Similarity=0.207 Sum_probs=83.2
Q ss_pred CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCc--hhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL--SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~--~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
|||+|||+|.||+.+++.+.+. +.++. ++++.. ++.......++..+.+++++..+.|+|+.|.|...+ .+..
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~-- 78 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHV-- 78 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHH--
Confidence 6999999999999999999875 45543 444432 232222223667788888884568999999988544 3443
Q ss_pred ccccccccCCCcEEEecCCC---CHHHHHHHHHHHHhcCCc-EEecCCCCChHhhc
Q 027255 77 KGGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGH-FLEAPVSGSKQPAE 128 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~ 128 (226)
...+..|+.++..++. .++..+++.+.+++.|.. |++....|+.....
T Consensus 79 ----~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d~l~ 130 (265)
T PRK13303 79 ----VPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGIDALA 130 (265)
T ss_pred ----HHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHHHHH
Confidence 2456678777776664 566678888888888865 56666666655433
No 136
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=98.82 E-value=5.3e-08 Score=82.08 Aligned_cols=133 Identities=17% Similarity=0.120 Sum_probs=94.9
Q ss_pred eEEEEecChhHHHHHHHHHhC--CC-----eEEEEcCCchhHH---HHH----HC--------------CCcccCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN--GF-----KVTVWNRTLSKCD---ELV----AH--------------GATVGGSPAEV 53 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~--G~-----~V~~~dr~~~~~~---~l~----~~--------------g~~~~~s~~~~ 53 (226)
||+|||.|+||+.+|+.+.++ .+ +|..|-+..+.-. .+. .. ++.+++++.++
T Consensus 23 kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~ea 102 (372)
T KOG2711|consen 23 KVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVEA 102 (372)
T ss_pred EEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHHH
Confidence 799999999999999999864 22 5777754333211 221 11 24568899999
Q ss_pred hhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC----HH-HHHHHHHHHHhc---CCcEEecCCCCChH
Q 027255 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD----HE-TSIKISRAITSK---GGHFLEAPVSGSKQ 125 (226)
Q Consensus 54 ~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~----~~-~~~~l~~~~~~~---g~~~ld~pv~g~~~ 125 (226)
+.++|+++..+|. +.+..++ +++...++++...|+++..- +. ..+-+++.+.+. .+.+|.+|-...+.
T Consensus 103 ~~dADilvf~vPh-Qf~~~ic---~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA~EV 178 (372)
T KOG2711|consen 103 AKDADILVFVVPH-QFIPRIC---EQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIASEV 178 (372)
T ss_pred hccCCEEEEeCCh-hhHHHHH---HHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchHHHH
Confidence 9999999999998 7899999 88999999999999998642 11 234455555544 45688888888877
Q ss_pred hhccCcEEEEecc
Q 027255 126 PAETGQLVILSAG 138 (226)
Q Consensus 126 ~a~~g~~~~~~gg 138 (226)
..+.-.-+...+-
T Consensus 179 a~~~f~e~tIg~~ 191 (372)
T KOG2711|consen 179 ANEKFCETTIGYK 191 (372)
T ss_pred HhccccceeEecc
Confidence 7666554444433
No 137
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.82 E-value=1.1e-08 Score=87.47 Aligned_cols=91 Identities=21% Similarity=0.348 Sum_probs=67.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
++|+|||+|.||..+++.|...| ++|+++||++++.+.+.+. |.... .+..+++.++|+||.|+|.+.. .+.+
T Consensus 179 ~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~-- 255 (311)
T cd05213 179 KKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIV-- 255 (311)
T ss_pred CEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHH--
Confidence 58999999999999999999866 6899999999988777664 54332 3456777889999999998654 3322
Q ss_pred cccccccc-CCCcEEEecCC
Q 027255 77 KGGVLEQI-CPGKGYIDMST 95 (226)
Q Consensus 77 ~~~l~~~l-~~g~ivvd~st 95 (226)
....+.. .++.++||.+.
T Consensus 256 -~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 256 -ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred -HHHHhhCCCCCeEEEEeCC
Confidence 2121222 35789999984
No 138
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.81 E-value=2e-08 Score=81.52 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=88.3
Q ss_pred CeEEEEecChh--------------------HHHHHHHHHhCCCeEEEEcCCchh-----HHHHHHCCCcccCCHHHHhh
Q 027255 1 MEVGFLGLGIM--------------------GKAISMNLLRNGFKVTVWNRTLSK-----CDELVAHGATVGGSPAEVIK 55 (226)
Q Consensus 1 m~IgvIG~G~m--------------------G~~~A~~l~~~G~~V~~~dr~~~~-----~~~l~~~g~~~~~s~~~~~~ 55 (226)
|||.|.|+|+- |..||..++++||+|.+.++|.+- .+++...|++++++..++++
T Consensus 2 mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~ 81 (340)
T COG4007 2 MKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAE 81 (340)
T ss_pred ceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhh
Confidence 78999999874 788999999999999999877553 45566779999999999999
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHH-HHHHHHHH
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHET-SIKISRAI 108 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~-~~~l~~~~ 108 (226)
.+++.++.+|-..+.-.+. +.++++++.|.+|.+++|++|-. ...+...+
T Consensus 82 ~~Ei~VLFTPFGk~T~~Ia---rei~~hvpEgAVicnTCT~sp~vLy~~LE~~L 132 (340)
T COG4007 82 HGEIHVLFTPFGKATFGIA---REILEHVPEGAVICNTCTVSPVVLYYSLEGEL 132 (340)
T ss_pred cceEEEEecccchhhHHHH---HHHHhhCcCCcEecccccCchhHHHHHhhhhh
Confidence 9999999999987887887 78899999999999999987753 34444444
No 139
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=98.81 E-value=8.6e-08 Score=76.60 Aligned_cols=106 Identities=25% Similarity=0.358 Sum_probs=79.6
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCe-EEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFK-VTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
|+||+||+|.+|..+.+.+... .++ +.+|||+.+++.++.+. +...++++++.++..|+++.|. +++++++..
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaA-S~~Av~e~~-- 77 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAA-SPEAVREYV-- 77 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeC-CHHHHHHHh--
Confidence 7999999999999999887643 355 78999999999887664 5666688999999999999998 557888776
Q ss_pred ccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCC
Q 027255 77 KGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGG 113 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~ 113 (226)
. +.|+.|.-+|-+|+ ..|...+++.+.++..+.
T Consensus 78 -~---~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 78 -P---KILKAGIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred -H---HHHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 3 44556655555554 356666666666555443
No 140
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.79 E-value=1.8e-08 Score=95.13 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=72.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC-------------CcccCCHHHHhhhC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG-------------ATVGGSPAEVIKKC 57 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g-------------~~~~~s~~~~~~~a 57 (226)
+|+|||+|.||..||..++.+|++|++||++++.+++.. +.| ++.+.+.+ .+++|
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~a 415 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNA 415 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccC
Confidence 799999999999999999999999999999998866522 112 44456664 56899
Q ss_pred CeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255 58 TITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 58 dvvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
|+||.++|.+-.++.-+| .++-+.+++++++...|+
T Consensus 416 DlViEAv~E~l~~K~~vf--~~l~~~~~~~~ilasNTS 451 (737)
T TIGR02441 416 DMVIEAVFEDLSLKHKVI--KEVEAVVPPHCIIASNTS 451 (737)
T ss_pred CeehhhccccHHHHHHHH--HHHHhhCCCCcEEEEcCC
Confidence 999999999888887776 457777888887765443
No 141
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.78 E-value=1.7e-08 Score=76.96 Aligned_cols=100 Identities=14% Similarity=0.238 Sum_probs=73.9
Q ss_pred EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--------------CHHHHhhhCCeEEEecCCHH
Q 027255 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------SPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------s~~~~~~~advvi~~~p~~~ 68 (226)
|.|+|+|.||.-+|..|.+.|++|.++.|++ +.+.+.+.|++... +..+..+.+|+||+|+.. .
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~ 78 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-Y 78 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-c
Confidence 7899999999999999999999999999998 88888877653321 122456779999999966 6
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHH
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAI 108 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~ 108 (226)
++++++ +.+.+.+.+++.|+.+-+.- ...+.+.+.+
T Consensus 79 ~~~~~l---~~l~~~~~~~t~iv~~qNG~-g~~~~l~~~~ 114 (151)
T PF02558_consen 79 QLEQAL---QSLKPYLDPNTTIVSLQNGM-GNEEVLAEYF 114 (151)
T ss_dssp GHHHHH---HHHCTGEETTEEEEEESSSS-SHHHHHHCHS
T ss_pred chHHHH---HHHhhccCCCcEEEEEeCCC-CcHHHHHHHc
Confidence 777888 77888888886666655542 2224444444
No 142
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.77 E-value=8.4e-09 Score=77.50 Aligned_cols=69 Identities=23% Similarity=0.250 Sum_probs=56.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCC------CcccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHG------ATVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g------~~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
.++.|||+|.||+.++..|...|.+ |+++||+.++++.+.+.- .....+..+...++|+||.|+|.+..
T Consensus 13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 3789999999999999999999986 999999999999887642 22345666778899999999987643
No 143
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=98.77 E-value=1.1e-07 Score=78.54 Aligned_cols=117 Identities=13% Similarity=0.168 Sum_probs=87.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCC---Ce-EEEEcCCchhHHHHHHCCCcccCCHHHH-hhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG---FK-VTVWNRTLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G---~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~-~~~advvi~~~p~~~~~~~v~~ 75 (226)
+|||+||+|.||+.+++.|.+.+ ++ +.+++|++++.+.+... ..++.+++++ ...+|+|+.|-+. +++++..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~~-~av~e~~- 79 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAGQ-QAIAEHA- 79 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCCH-HHHHHHH-
Confidence 58999999999999999987643 55 55789998888888765 7788999996 6789999999954 7777776
Q ss_pred cccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCc-EEecCCCCChH
Q 027255 76 DKGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGH-FLEAPVSGSKQ 125 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~-~ld~pv~g~~~ 125 (226)
. +.|..|.-++-+|. .++...+++.+.+++.|.+ |+-+.-.||-.
T Consensus 80 --~---~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSGAigGlD 128 (267)
T PRK13301 80 --E---GCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLD 128 (267)
T ss_pred --H---HHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeChHHHhHH
Confidence 3 44556776666665 3677888888888776643 55554444433
No 144
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=98.76 E-value=4.6e-08 Score=72.43 Aligned_cols=110 Identities=27% Similarity=0.380 Sum_probs=72.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-CCCeE-EEEcCCch-h----HHHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR-NGFKV-TVWNRTLS-K----CDELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~-~G~~V-~~~dr~~~-~----~~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
|||+++|+ |.||+.+++.+.+ .++++ .+++|+++ . ...+. ..++.+..+++++.+.+|+||-++ .++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~ 79 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDA 79 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHH
Confidence 79999999 9999999999998 68884 46788872 1 11221 347788899999999999999988 6666
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCH-HHHHHHHHHHHhcCCcEEecC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~-~~~~~l~~~~~~~g~~~ld~p 119 (226)
+.+.+ + ..++.+..+|-.+|... +..+.+.+ +.++ +..+-+|
T Consensus 80 ~~~~~---~---~~~~~g~~~ViGTTG~~~~~~~~l~~-~a~~-~~vl~a~ 122 (124)
T PF01113_consen 80 VYDNL---E---YALKHGVPLVIGTTGFSDEQIDELEE-LAKK-IPVLIAP 122 (124)
T ss_dssp HHHHH---H---HHHHHT-EEEEE-SSSHHHHHHHHHH-HTTT-SEEEE-S
T ss_pred hHHHH---H---HHHhCCCCEEEECCCCCHHHHHHHHH-Hhcc-CCEEEeC
Confidence 66665 3 23445778888888764 44455544 3333 5555444
No 145
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.76 E-value=7e-08 Score=85.88 Aligned_cols=91 Identities=15% Similarity=0.097 Sum_probs=72.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|+|||+|.+|+.+|+.+...|.+|+++++++.+.......|+.. .+.+++++.+|+|++++.+...+. ...
T Consensus 255 KtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~iI~------~e~ 327 (476)
T PTZ00075 255 KTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKDIIT------LEH 327 (476)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCcccccC------HHH
Confidence 4799999999999999999999999999999988765555567654 468899999999999975433222 124
Q ss_pred ccccCCCcEEEecCCCCH
Q 027255 81 LEQICPGKGYIDMSTVDH 98 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~ 98 (226)
++.+++|.++++.+....
T Consensus 328 ~~~MKpGAiLINvGr~d~ 345 (476)
T PTZ00075 328 MRRMKNNAIVGNIGHFDN 345 (476)
T ss_pred HhccCCCcEEEEcCCCch
Confidence 477899999999988753
No 146
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=98.75 E-value=8.2e-08 Score=79.86 Aligned_cols=112 Identities=18% Similarity=0.170 Sum_probs=78.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
|||+|||+ |.||+.+++.+.+. ++++. ++|+++++.......++....+++++++.+|+|+.++|... ..+++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~p~~-~~~~~--- 77 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTTPEA-TLENL--- 77 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCCHHH-HHHHH---
Confidence 69999998 99999999998864 67755 58998876655433466677899998888999998886644 34443
Q ss_pred cccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255 78 GGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVS 121 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~ 121 (226)
...++.|..+|..+| .+++..+++.+ +. +++..+=+|-+
T Consensus 78 ---~~al~~G~~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~ 117 (257)
T PRK00048 78 ---EFALEHGKPLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNF 117 (257)
T ss_pred ---HHHHHcCCCEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcc
Confidence 244556766655554 47777777777 33 55555555543
No 147
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.74 E-value=1.3e-07 Score=83.20 Aligned_cols=101 Identities=20% Similarity=0.129 Sum_probs=78.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
.+|+|+|+|.+|+.+|+.+...|.+|+++++++.+.......|..+. +.+++++++|+||.++.+...+..- .
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~ 268 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------H 268 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------H
Confidence 37999999999999999999999999999999988766666677544 5688899999999988765544432 3
Q ss_pred ccccCCCcEEEecCCCCH-HHHHHHHHHH
Q 027255 81 LEQICPGKGYIDMSTVDH-ETSIKISRAI 108 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~-~~~~~l~~~~ 108 (226)
+..+++|.++++.+.... -....+.+.+
T Consensus 269 ~~~mK~GailiN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 269 FENMKDGAIVANIGHFDVEIDVKALEELA 297 (406)
T ss_pred HhcCCCCcEEEEECCCCceeCHHHHHHHH
Confidence 467889999999987654 3444454444
No 148
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=98.73 E-value=1.6e-07 Score=80.05 Aligned_cols=109 Identities=8% Similarity=0.119 Sum_probs=78.4
Q ss_pred CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCc-hhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTL-SKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~-~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
+||+|||+|+||+.+++.+.++ ++++. +|+|++ ++.. ...++....+..++..+.|+|++|+|+..+.+.+.
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~--- 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA--- 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH---
Confidence 4899999999999999999875 68866 579986 4332 12344455677777788999999999877766554
Q ss_pred cccccccCCCcEEEecCCC---CHHHHHHHHHHHHhc-CCcEEec
Q 027255 78 GGVLEQICPGKGYIDMSTV---DHETSIKISRAITSK-GGHFLEA 118 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~-g~~~ld~ 118 (226)
+.+..|.-+|++... .|+..+++.+.+++. ++.++.+
T Consensus 79 ----~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vsvi~~ 119 (324)
T TIGR01921 79 ----PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVSVIST 119 (324)
T ss_pred ----HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 556788888887643 356677777766653 4444453
No 149
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=98.71 E-value=2.1e-07 Score=80.09 Aligned_cols=112 Identities=17% Similarity=0.186 Sum_probs=87.0
Q ss_pred CeEEEEecChh-HHHHHHHHHhCCC--e-EEEEcCCchhHHHHHHC-CC-cccCCHHHHhhh--CCeEEEecCCHHHHHH
Q 027255 1 MEVGFLGLGIM-GKAISMNLLRNGF--K-VTVWNRTLSKCDELVAH-GA-TVGGSPAEVIKK--CTITIGMLADPAAALS 72 (226)
Q Consensus 1 m~IgvIG~G~m-G~~~A~~l~~~G~--~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~~~~~~--advvi~~~p~~~~~~~ 72 (226)
+||||||+|.+ +...+..+.+.+. + |.++|+++++++.+.+. |+ ..+++.++++++ .|+|++++|+..+.+.
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~ 83 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAEL 83 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHH
Confidence 58999999955 4668888888763 4 66789999999888775 66 478899999986 5899999999888877
Q ss_pred HhhcccccccccCCCcEEEecC--CCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 73 VVFDKGGVLEQICPGKGYIDMS--TVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~s--t~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
++ ..+..|+.|+.-- +.++++.++|.+..+++|..+.-+-
T Consensus 84 ~~-------~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~ 125 (342)
T COG0673 84 AL-------AALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGF 125 (342)
T ss_pred HH-------HHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeeh
Confidence 65 5566777665544 3578899999999999877655443
No 150
>PLN02494 adenosylhomocysteinase
Probab=98.71 E-value=1.2e-07 Score=84.17 Aligned_cols=98 Identities=11% Similarity=0.116 Sum_probs=75.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHH-HHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~-~~v~~~~~~ 79 (226)
.+|+|+|+|.+|+.+|+.+...|.+|+++++++.+.......|..+. +.+++++.+|+|+++..+...+ .+.
T Consensus 255 KtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e~------ 327 (477)
T PLN02494 255 KVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVDH------ 327 (477)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHHH------
Confidence 36999999999999999999999999999999987666666677654 6788999999999877654332 333
Q ss_pred cccccCCCcEEEecCCC-CHHHHHHHHH
Q 027255 80 VLEQICPGKGYIDMSTV-DHETSIKISR 106 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~-~~~~~~~l~~ 106 (226)
++.++++.++++.+.. ..-....+.+
T Consensus 328 -L~~MK~GAiLiNvGr~~~eID~~aL~~ 354 (477)
T PLN02494 328 -MRKMKNNAIVCNIGHFDNEIDMLGLET 354 (477)
T ss_pred -HhcCCCCCEEEEcCCCCCccCHHHHhh
Confidence 3678899999999884 3334444443
No 151
>PRK06444 prephenate dehydrogenase; Provisional
Probab=98.70 E-value=9.7e-08 Score=76.12 Aligned_cols=80 Identities=24% Similarity=0.332 Sum_probs=62.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|||+|||. |.||+.+++.|.++||.|+ +.+||+||+|+|- ....+++ +.
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i---~~ 50 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYI---ES 50 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHH---HH
Confidence 89999998 9999999999999999986 2589999999998 4566666 33
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCCh
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSK 124 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~ 124 (226)
+. .+++|.+++.-... +....|+.. |++|..
T Consensus 51 ~~------~~v~Dv~SvK~~i~--------~~~~~~vg~HPMfGp~ 82 (197)
T PRK06444 51 YD------NNFVEISSVKWPFK--------KYSGKIVSIHPLFGPM 82 (197)
T ss_pred hC------CeEEeccccCHHHH--------HhcCCEEecCCCCCCC
Confidence 32 37899998876422 124578877 899843
No 152
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=98.68 E-value=8e-08 Score=86.60 Aligned_cols=103 Identities=21% Similarity=0.318 Sum_probs=75.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCccc--CCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATVG--GSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~~~~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
++++|+|+|.+|++++..|.+.|++|+++||++++.+.+.+. +.... .+..+ +.++|+||.|+|.+..+...
T Consensus 333 k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~~---- 407 (477)
T PRK09310 333 QHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPKA---- 407 (477)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchhH----
Confidence 478999999999999999999999999999999988887654 22211 22222 46799999999986432211
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+. .+++|+....+.+. +.+.++++|+..+++
T Consensus 408 ------l~--~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~G 438 (477)
T PRK09310 408 ------FP--PCVVDINTLPKHSP--YTQYARSQGSSIIYG 438 (477)
T ss_pred ------Hh--hhEEeccCCCCCCH--HHHHHHHCcCEEECc
Confidence 11 38999988765544 667888888887665
No 153
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=98.68 E-value=7.6e-08 Score=82.29 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=87.1
Q ss_pred eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC----C---CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----G---ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~----g---~~~~~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
.++|||+|.++....+.+..- --+|.+|+|+++..+++... + +..+.|.++++++||+|++|+|+.+ .
T Consensus 132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---P 208 (330)
T COG2423 132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---P 208 (330)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---C
Confidence 589999999999999998863 34799999999999887643 3 5688999999999999999999855 4
Q ss_pred HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
++. .+.+++|..|..+++-.|...+--.+.+.+.+..|+|.+
T Consensus 209 il~-----~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~ 250 (330)
T COG2423 209 VLK-----AEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSL 250 (330)
T ss_pred eec-----HhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCH
Confidence 441 245779999998888777666555566666668888875
No 154
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.68 E-value=1.8e-07 Score=82.63 Aligned_cols=91 Identities=18% Similarity=0.121 Sum_probs=73.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
.+|+|+|+|.+|+.+|+.+...|.+|+++|+++.+.......|..+ .+.+++++.+|+||.++.+...+.. ..
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~------~~ 285 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITA------EH 285 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHH------HH
Confidence 3699999999999999999999999999999998876666667664 4688999999999999866443432 23
Q ss_pred ccccCCCcEEEecCCCCH
Q 027255 81 LEQICPGKGYIDMSTVDH 98 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~ 98 (226)
+..+++|.++++.+....
T Consensus 286 ~~~mK~GailiNvG~~d~ 303 (425)
T PRK05476 286 MEAMKDGAILANIGHFDN 303 (425)
T ss_pred HhcCCCCCEEEEcCCCCC
Confidence 467889999999987543
No 155
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=98.68 E-value=2.1e-07 Score=77.78 Aligned_cols=114 Identities=19% Similarity=0.226 Sum_probs=78.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHh-CCCeEE-EEcCC-chhH----HHHHH---CCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLG-LGIMGKAISMNLLR-NGFKVT-VWNRT-LSKC----DELVA---HGATVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~-~G~~V~-~~dr~-~~~~----~~l~~---~g~~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
|||+|+| +|.||+.+++.+.. .++++. ++||. +++. ..+.. .|+.++++++++...+|+|+.++|.. .
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p~-~ 80 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTPE-G 80 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCChH-H
Confidence 6999999 69999999999986 577755 57854 3221 12211 35667788888855689999999764 4
Q ss_pred HHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVS 121 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~ 121 (226)
..+.+ ...+..|..+|..+| .+++..+++.+.+++.|+.++-+|-+
T Consensus 81 ~~~~~------~~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 81 VLNHL------KFALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred HHHHH------HHHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 44444 245566766655444 67888888888887777776665543
No 156
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.68 E-value=1e-07 Score=73.11 Aligned_cols=91 Identities=20% Similarity=0.202 Sum_probs=65.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
+++.|+|.|..|+.+|+.|...|.+|++++++|-++-+....|.++. +.++++..+|++|+++-....+.. +.
T Consensus 24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~------e~ 96 (162)
T PF00670_consen 24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG------EH 96 (162)
T ss_dssp SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H------HH
T ss_pred CEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH------HH
Confidence 36889999999999999999999999999999988777777788765 689999999999998865332221 12
Q ss_pred ccccCCCcEEEecCCCCH
Q 027255 81 LEQICPGKGYIDMSTVDH 98 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~ 98 (226)
++.++.|.++.+.+...-
T Consensus 97 ~~~mkdgail~n~Gh~d~ 114 (162)
T PF00670_consen 97 FRQMKDGAILANAGHFDV 114 (162)
T ss_dssp HHHS-TTEEEEESSSSTT
T ss_pred HHHhcCCeEEeccCcCce
Confidence 366889999999887543
No 157
>PRK07340 ornithine cyclodeaminase; Validated
Probab=98.68 E-value=1.2e-07 Score=80.85 Aligned_cols=108 Identities=14% Similarity=0.187 Sum_probs=79.1
Q ss_pred CeEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC----CCcc-cCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----GATV-GGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~----g~~~-~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
.+|+|||+|.+|..+++.+.. .+ .+|.+|+|++++.+.+.+. +... +.+.+++++++|+|++|+|... .+
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl 202 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PV 202 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ce
Confidence 379999999999999999975 45 4699999999998887654 3333 4788899999999999998864 33
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+ . ..+++|+.|...++..|...+--.+.+... -.|+|.
T Consensus 203 ~---~---~~~~~g~hi~~iGs~~p~~~El~~~~~~~a-~v~vD~ 240 (304)
T PRK07340 203 Y---P---EAARAGRLVVAVGAFTPDMAELAPRTVRGS-RLYVDD 240 (304)
T ss_pred e---C---ccCCCCCEEEecCCCCCCcccCCHHHHhhC-eEEEcC
Confidence 3 2 235799999998887775433222333333 346776
No 158
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=98.67 E-value=5.8e-08 Score=82.51 Aligned_cols=109 Identities=6% Similarity=0.049 Sum_probs=80.4
Q ss_pred eEEEEecChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
+++|||+|..|...++.+..- . .+|++|+|++++.+.|.+. | +.++.++++++.+||+|++++|..+ .
T Consensus 119 ~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~---P 195 (301)
T PRK06407 119 NFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDT---P 195 (301)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC---c
Confidence 689999999999999888863 2 4699999999998887543 4 4567899999999999999998743 3
Q ss_pred HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
++. .+.+++|..|.-..+..|...+--.+.+.+....|+|.
T Consensus 196 ~~~-----~~~l~pg~hV~aiGs~~p~~~El~~~~l~~a~~v~vD~ 236 (301)
T PRK06407 196 IFN-----RKYLGDEYHVNLAGSNYPNRREAEHSVLNDADIVVTEH 236 (301)
T ss_pred Eec-----HHHcCCCceEEecCCCCCCcccCCHHHHHhCCEEEECC
Confidence 331 13467888888888777754433334444444567775
No 159
>PRK06823 ornithine cyclodeaminase; Validated
Probab=98.65 E-value=9e-08 Score=81.81 Aligned_cols=109 Identities=17% Similarity=0.228 Sum_probs=79.6
Q ss_pred eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC----CC--cccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----GA--TVGGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~----g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
+++|||+|..+...++.+..- -.+|++|+|++++.+.+.+. +. .++++.+++++++|+|++|++..+ .+
T Consensus 130 ~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~---P~ 206 (315)
T PRK06823 130 AIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSRE---PL 206 (315)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCC---ce
Confidence 689999999999999988753 24799999999998876642 43 447899999999999999998643 33
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+. .+.+++|..|+..++..|...+--.+.+.+....|+|-
T Consensus 207 ~~-----~~~l~~G~hi~~iGs~~p~~~Eld~~~l~~a~~vvvD~ 246 (315)
T PRK06823 207 LQ-----AEDIQPGTHITAVGADSPGKQELDAELVARADKILVDS 246 (315)
T ss_pred eC-----HHHcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 31 13567999999888877754333333444434456775
No 160
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.65 E-value=1.3e-07 Score=78.66 Aligned_cols=88 Identities=22% Similarity=0.244 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|+|||.|+-|.+.|.||..+|.+|++--|..+. .+...+.|..+ .+.+|+++.+|+|++.+|+ ..-.+++. +.
T Consensus 19 K~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PD-e~q~~vy~--~~ 94 (338)
T COG0059 19 KKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPD-EQQKEVYE--KE 94 (338)
T ss_pred CeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCch-hhHHHHHH--HH
Confidence 47999999999999999999999998887776555 56666678775 5799999999999999998 55666762 36
Q ss_pred cccccCCCcEEEe
Q 027255 80 VLEQICPGKGYID 92 (226)
Q Consensus 80 l~~~l~~g~ivvd 92 (226)
+.+.|+.|+.+.-
T Consensus 95 I~p~Lk~G~aL~F 107 (338)
T COG0059 95 IAPNLKEGAALGF 107 (338)
T ss_pred hhhhhcCCceEEe
Confidence 8888888886543
No 161
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=98.64 E-value=6.9e-08 Score=84.95 Aligned_cols=87 Identities=20% Similarity=0.276 Sum_probs=69.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCC------chhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRT------LSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~------~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~ 74 (226)
++|+|||+|..|++.|.+|...|++|++--|. .+..+.+.+.|..+ .++.|+++.||+|++.+|+. .-..+.
T Consensus 37 KtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~ 114 (487)
T PRK05225 37 KKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVV 114 (487)
T ss_pred CEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHH
Confidence 57999999999999999999999999854443 34555566678765 67999999999999999996 444454
Q ss_pred hcccccccccCCCcEEEe
Q 027255 75 FDKGGVLEQICPGKGYID 92 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivvd 92 (226)
+.+.+.+++|..+.-
T Consensus 115 ---~~i~p~LK~Ga~L~f 129 (487)
T PRK05225 115 ---RAVQPLMKQGAALGY 129 (487)
T ss_pred ---HHHHhhCCCCCEEEe
Confidence 678899998887654
No 162
>PRK08618 ornithine cyclodeaminase; Validated
Probab=98.61 E-value=1.9e-07 Score=80.35 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=79.4
Q ss_pred eEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC-----CC--cccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GA--TVGGSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
+++|||+|.+|..++..++. .+ .+|.+|||++++.+++.+. ++ ..+.+.++++.++|+|++|+|... .
T Consensus 129 ~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---p 205 (325)
T PRK08618 129 TLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---P 205 (325)
T ss_pred EEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---c
Confidence 69999999999999988764 34 4699999999999887652 43 356788999999999999998753 3
Q ss_pred HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
++ . ..+++|+.|+...+..|...+--.+.+.+....|+|.
T Consensus 206 ~i---~---~~l~~G~hV~~iGs~~p~~~E~~~~~~~~a~~vvvD~ 245 (325)
T PRK08618 206 VF---S---EKLKKGVHINAVGSFMPDMQELPSEAIARANKVVVES 245 (325)
T ss_pred ch---H---HhcCCCcEEEecCCCCcccccCCHHHHhhCCEEEECC
Confidence 33 1 4568999999888877754433233444434456676
No 163
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=98.61 E-value=8.2e-07 Score=76.67 Aligned_cols=108 Identities=11% Similarity=0.142 Sum_probs=83.5
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCC----HHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLAD----PAAALS 72 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~----~~~~~~ 72 (226)
.||+|||+ .||...+..+.+. ++++. ++|+++++++++.+. |+..+++.++++++.|++++++|+ ..+.+.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~ 82 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSAL 82 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHH
Confidence 48999999 6899999999875 46754 689999999988775 888889999999888999998864 244443
Q ss_pred HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l 116 (226)
+. ..++.|+.|+.--....++.+++.+.++++|+.+.
T Consensus 83 a~-------~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~ 119 (343)
T TIGR01761 83 AR-------ALLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYL 119 (343)
T ss_pred HH-------HHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEE
Confidence 33 45667777666655567888999988888876543
No 164
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=98.60 E-value=1.4e-07 Score=69.51 Aligned_cols=91 Identities=18% Similarity=0.189 Sum_probs=59.9
Q ss_pred eEEEEec-ChhHHHHHHHHHhC-CCeEEEE-cCCchhHHHHHHCC--Cc-c---cCCHHHH-hhhCCeEEEecCCHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRN-GFKVTVW-NRTLSKCDELVAHG--AT-V---GGSPAEV-IKKCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~-dr~~~~~~~l~~~g--~~-~---~~s~~~~-~~~advvi~~~p~~~~~~ 71 (226)
||+|||. |.+|..++..|... ++++... +++.++.+.+...+ +. . ..+..+. ..++|+||+|+|++.+.+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~ 80 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE 80 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence 6899995 99999999999984 7887655 66554433333322 11 0 1111112 247999999999965554
Q ss_pred HHhhcccccccccCCCcEEEecCCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
.+ ..+...+.+|+++||+|+.
T Consensus 81 ~~----~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 81 IA----PLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HH----HHHHhhhcCCCEEEECCcc
Confidence 33 2334556799999999985
No 165
>PLN00203 glutamyl-tRNA reductase
Probab=98.60 E-value=1.2e-07 Score=85.94 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=56.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--CCc----ccCCHHHHhhhCCeEEEecCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--GAT----VGGSPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--g~~----~~~s~~~~~~~advvi~~~p~~~ 68 (226)
.+|+|||+|.||..++++|...|+ +|+++||++++.+.+.+. +.. ...+..+++.++|+||+|+|.+.
T Consensus 267 kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 267 ARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred CEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 379999999999999999999996 699999999999988764 322 23566778899999999986543
No 166
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.57 E-value=5.7e-07 Score=79.32 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=73.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~ 81 (226)
+|+|+|+|.+|..+++.+...|.+|+++|+++.+.+.....|+... +.+++++.+|+||.|+.+...+..- .+
T Consensus 204 tVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l 276 (413)
T cd00401 204 VAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HF 276 (413)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HH
Confidence 7999999999999999999999999999999999888888888554 4578888999999998765544433 24
Q ss_pred cccCCCcEEEecCCC
Q 027255 82 EQICPGKGYIDMSTV 96 (226)
Q Consensus 82 ~~l~~g~ivvd~st~ 96 (226)
..+++|.++++.+..
T Consensus 277 ~~mk~GgilvnvG~~ 291 (413)
T cd00401 277 EQMKDGAIVCNIGHF 291 (413)
T ss_pred hcCCCCcEEEEeCCC
Confidence 678899999998854
No 167
>PRK11579 putative oxidoreductase; Provisional
Probab=98.57 E-value=1.2e-06 Score=76.01 Aligned_cols=109 Identities=17% Similarity=0.205 Sum_probs=79.7
Q ss_pred CeEEEEecChhHHH-HHHHHHh-CCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKA-ISMNLLR-NGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~-~A~~l~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~ 74 (226)
+||||||+|.||.. .+..+.+ .++++. ++|+++++... .. +...+.+++++++ +.|+|++|+|+..+.+.++
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~~--~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~ 82 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVKA--DWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAK 82 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHHh--hCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHH
Confidence 48999999999984 5666655 367765 78999876542 22 5567889999986 4799999999988777665
Q ss_pred hcccccccccCCCcEEE-ecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255 75 FDKGGVLEQICPGKGYI-DMS-TVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivv-d~s-t~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
..++.|+.|+ +-- +.+.+..++|.+.++++|+.+.-+
T Consensus 83 -------~al~aGkhVl~EKPla~t~~ea~~l~~~a~~~g~~l~v~ 121 (346)
T PRK11579 83 -------AALEAGKHVVVDKPFTVTLSQARELDALAKSAGRVLSVF 121 (346)
T ss_pred -------HHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEE
Confidence 4456676554 432 357788899999888888765433
No 168
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=98.57 E-value=6.5e-07 Score=86.65 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=83.3
Q ss_pred eEEEEecChhHHHHHHHHHhCC-Ce-------------EEEEcCCchhHHHHHHC--C---Ccc-cCCHHHHh---hhCC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG-FK-------------VTVWNRTLSKCDELVAH--G---ATV-GGSPAEVI---KKCT 58 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G-~~-------------V~~~dr~~~~~~~l~~~--g---~~~-~~s~~~~~---~~ad 58 (226)
+|+|||+|.||+..++.|++.. ++ |.+.|+++++++++.+. + +.. +.+.+++. +++|
T Consensus 571 rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~D 650 (1042)
T PLN02819 571 NVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVD 650 (1042)
T ss_pred cEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCC
Confidence 7999999999999999998753 33 88999999998887663 4 233 45656554 5799
Q ss_pred eEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 59 ITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 59 vvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+|++|+|..-+..-+ ..+++.|+.+++.+ ......+++.+.++++|+.++-.
T Consensus 651 aVIsalP~~~H~~VA-------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~e 702 (1042)
T PLN02819 651 VVISLLPASCHAVVA-------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILCE 702 (1042)
T ss_pred EEEECCCchhhHHHH-------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEEC
Confidence 999999996554333 25667888888887 55667788999999999876443
No 169
>PRK06046 alanine dehydrogenase; Validated
Probab=98.56 E-value=1.9e-07 Score=80.38 Aligned_cols=108 Identities=21% Similarity=0.262 Sum_probs=77.7
Q ss_pred eEEEEecChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHHC-----C--CcccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-----G--ATVGGSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
+|+|||+|.+|...++.+... + ..|.+|||++++.+++.+. + +..+.+.+++++ +|+|++|+|+.. .
T Consensus 131 ~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~---P 206 (326)
T PRK06046 131 VVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRK---P 206 (326)
T ss_pred EEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCC---c
Confidence 699999999999999999853 4 3688999999998887653 4 345778999987 999999999843 3
Q ss_pred HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
++. .+.+++|+.|...++..|...+ +...+-.+.-.|+|..
T Consensus 207 ~~~-----~~~l~~g~hV~~iGs~~p~~~E-l~~~~~~~a~vvvD~~ 247 (326)
T PRK06046 207 VVK-----AEWIKEGTHINAIGADAPGKQE-LDPEILLRAKVVVDDM 247 (326)
T ss_pred Eec-----HHHcCCCCEEEecCCCCCcccc-CCHHHHhCCcEEECCH
Confidence 331 1346799999888887774333 3333323334577763
No 170
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=98.55 E-value=2e-07 Score=80.14 Aligned_cols=89 Identities=17% Similarity=0.327 Sum_probs=68.3
Q ss_pred eEEEEecChhHHHHHHHHHh-CCC-eEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR-NGF-KVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~-~G~-~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
+++|||+|.++...+..|.. .+. +|++|+|++++.+.+.+. |+. .+.+++++++++|+|+.|+|..+ .
T Consensus 131 ~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p 207 (326)
T TIGR02992 131 VVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---P 207 (326)
T ss_pred EEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---c
Confidence 69999999999999999974 564 699999999999887653 443 36788999999999999998743 2
Q ss_pred HhhcccccccccCCCcEEEecCCCCH
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTVDH 98 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~~~ 98 (226)
++. .+.+++|..+...+...|
T Consensus 208 ~i~-----~~~l~~g~~i~~vg~~~p 228 (326)
T TIGR02992 208 ILH-----AEWLEPGQHVTAMGSDAE 228 (326)
T ss_pred Eec-----HHHcCCCcEEEeeCCCCC
Confidence 231 134678888877665433
No 171
>PRK08291 ectoine utilization protein EutC; Validated
Probab=98.52 E-value=2.9e-07 Score=79.30 Aligned_cols=88 Identities=19% Similarity=0.274 Sum_probs=66.2
Q ss_pred CeEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC-----CCc--ccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH-----GAT--VGGSPAEVIKKCTITIGMLADPAAAL 71 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~~~~~~advvi~~~p~~~~~~ 71 (226)
++|+|||+|.+|..++..+.. .+ .+|++|+|++++.+.+.+. |+. ...++++++.++|+|++++|...
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~--- 209 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE--- 209 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---
Confidence 479999999999999998875 44 5799999999999988662 443 46788999999999999998743
Q ss_pred HHhhcccccccccCCCcEEEecCCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
.++ . ...+++|..+....+.
T Consensus 210 p~i---~--~~~l~~g~~v~~vg~d 229 (330)
T PRK08291 210 PIL---K--AEWLHPGLHVTAMGSD 229 (330)
T ss_pred cEe---c--HHHcCCCceEEeeCCC
Confidence 222 1 1235677777665543
No 172
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=98.52 E-value=2.9e-07 Score=77.49 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=78.1
Q ss_pred eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-C----CcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-G----ATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g----~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++.|+|+|.+|++++..|...| .+|++++|+.++.+.+.+. + +....+..+.+.++|+||.++|.+-.- +.-
T Consensus 125 ~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~~-~~~- 202 (278)
T PRK00258 125 RILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMSG-ELP- 202 (278)
T ss_pred EEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCCC-CCC-
Confidence 6899999999999999999999 7899999999998887654 1 111113346667899999999874321 000
Q ss_pred cccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 76 DKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
...-....++++.+++|+.- .|..+ .+.+.++++|+..+++
T Consensus 203 ~~~~~~~~l~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~~G 243 (278)
T PRK00258 203 LPPLPLSLLRPGTIVYDMIY-GPLPT-PFLAWAKAQGARTIDG 243 (278)
T ss_pred CCCCCHHHcCCCCEEEEeec-CCCCC-HHHHHHHHCcCeecCC
Confidence 00001234678899999976 34332 4566677788876654
No 173
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.51 E-value=3.6e-07 Score=77.09 Aligned_cols=111 Identities=22% Similarity=0.238 Sum_probs=77.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-----C-Ccc--cCCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G-ATV--GGSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----g-~~~--~~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
+|.|||+|.+|++++..|...|. +|+++||+.++++.+.+. . ... ..+..+.++++|+||.|+|..-.-..
T Consensus 129 ~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~ 208 (284)
T PRK12549 129 RVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHP 208 (284)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCCCCC
Confidence 68999999999999999999997 799999999999888653 1 111 23445567789999999986421000
Q ss_pred Hhhccccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 73 VVFDKGGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 73 v~~~~~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
- ..+ ...+.++.+++|+.-.... + .+.+.++++|+..+|+
T Consensus 209 ~----~~~~~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~G 249 (284)
T PRK12549 209 G----LPLPAELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLDG 249 (284)
T ss_pred C----CCCCHHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEecC
Confidence 0 001 1236678899998764332 2 4566677788877665
No 174
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=98.51 E-value=9.4e-07 Score=75.30 Aligned_cols=65 Identities=11% Similarity=0.136 Sum_probs=50.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHH----HC--------CCcccCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH--------GATVGGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~----~~--------g~~~~~s~~~~~~~advvi~~~p~ 66 (226)
|||+|||+|.||..+|..++.+|+ +|.++|++++..+... +. .++.+.+.++ +++||+||++++.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGL 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCC
Confidence 799999999999999999999887 8999999776543211 11 1333566666 6899999999873
No 175
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=98.49 E-value=7.4e-08 Score=77.02 Aligned_cols=89 Identities=11% Similarity=0.148 Sum_probs=67.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----------C------------------CcccCCHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----------G------------------ATVGGSPAE 52 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----------g------------------~~~~~s~~~ 52 (226)
+|+|||.|.||+.||+--+..|++|+++|++++.+.+..+. + +..+++..+
T Consensus 13 ~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~ 92 (298)
T KOG2304|consen 13 NVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSD 92 (298)
T ss_pred ceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHH
Confidence 59999999999999999999999999999999876654321 1 345677888
Q ss_pred HhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEe
Q 027255 53 VIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYID 92 (226)
Q Consensus 53 ~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd 92 (226)
+++++|+||.++-....++.-+| ..+-...++.+++..
T Consensus 93 ~v~dadliiEAivEn~diK~~lF--~~l~~~ak~~~il~t 130 (298)
T KOG2304|consen 93 AVSDADLIIEAIVENLDIKRKLF--KDLDKIAKSSTILAT 130 (298)
T ss_pred hhhhhHHHHHHHHHhHHHHHHHH--HHHHhhcccceEEee
Confidence 88889999988766666665555 344455555555543
No 176
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=98.49 E-value=9.6e-07 Score=74.00 Aligned_cols=136 Identities=15% Similarity=0.181 Sum_probs=96.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC-------------------CCcccCCHHHHhhhCCe
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH-------------------GATVGGSPAEVIKKCTI 59 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~adv 59 (226)
+||+.||+|.+|.+-+..++-+- .+|++.|.+..++..+... +.-+.++.+.+++++|+
T Consensus 2 ~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadl 81 (481)
T KOG2666|consen 2 VKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADL 81 (481)
T ss_pred ceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcce
Confidence 58999999999999888776543 5788999998887766432 23457788999999999
Q ss_pred EEEecCCHH--------------HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc--CCc--EEecCCC
Q 027255 60 TIGMLADPA--------------AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK--GGH--FLEAPVS 121 (226)
Q Consensus 60 vi~~~p~~~--------------~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~--g~~--~ld~pv~ 121 (226)
||+.+.++. .++... +-+.+.....++++.-||+....++.+...+... |+. .|.-|-+
T Consensus 82 vfisvntptkt~g~gkg~aadlky~es~a---r~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpef 158 (481)
T KOG2666|consen 82 VFISVNTPTKTYGLGKGKAADLKYWESAA---RMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEF 158 (481)
T ss_pred EEEEecCCcccccCCCCcccchhHHHHHH---HHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHH
Confidence 999986543 122222 3344555678999999999999999999998532 554 4666654
Q ss_pred CChHhh----ccCcEEEEeccCC
Q 027255 122 GSKQPA----ETGQLVILSAGEK 140 (226)
Q Consensus 122 g~~~~a----~~g~~~~~~gg~~ 140 (226)
=.+..| .++. -++.||++
T Consensus 159 laegtaikdl~npd-rvligg~e 180 (481)
T KOG2666|consen 159 LAEGTAIKDLFNPD-RVLIGGRE 180 (481)
T ss_pred hcccchhhhhcCCc-eEEECCCC
Confidence 322222 1222 27888887
No 177
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=98.48 E-value=1.8e-07 Score=83.20 Aligned_cols=69 Identities=30% Similarity=0.466 Sum_probs=56.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcc--cCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATV--GGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~--~~s~~~~~~~advvi~~~p~~~~ 69 (226)
++|+|||+|.||..+++.|...|+ +|++++|++++.+.+... |... ..+..+.+.++|+||.|++.+..
T Consensus 183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~ 255 (423)
T PRK00045 183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHP 255 (423)
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCc
Confidence 479999999999999999999997 799999999998877654 4332 24456677889999999987543
No 178
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=98.48 E-value=3.4e-07 Score=81.26 Aligned_cols=69 Identities=26% Similarity=0.411 Sum_probs=56.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
.+|+|||+|.||..+++.|...| .+|++|||++++.+.+.+. |.. ...+..+++.++|+||.|++.+..
T Consensus 181 ~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ 253 (417)
T TIGR01035 181 KKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHP 253 (417)
T ss_pred CEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCc
Confidence 37999999999999999999999 7899999999988777654 432 224566778899999999876543
No 179
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=98.44 E-value=9e-07 Score=68.87 Aligned_cols=73 Identities=26% Similarity=0.337 Sum_probs=58.4
Q ss_pred CeEEEEecChh-HHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
.+|.|||.|.| |..+|++|.+.|.+|++.+|+. .++.+.+.++|+||++++.+. ++ ..
T Consensus 45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii-~~-- 103 (168)
T cd01080 45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LV-KG-- 103 (168)
T ss_pred CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----ee-cH--
Confidence 37899999997 9999999999999999999984 245678899999999998854 22 11
Q ss_pred cccccCCCcEEEecCCC
Q 027255 80 VLEQICPGKGYIDMSTV 96 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~ 96 (226)
+.++++.++||.+.-
T Consensus 104 --~~~~~~~viIDla~p 118 (168)
T cd01080 104 --DMVKPGAVVIDVGIN 118 (168)
T ss_pred --HHccCCeEEEEccCC
Confidence 235678999998864
No 180
>PRK07589 ornithine cyclodeaminase; Validated
Probab=98.43 E-value=4.7e-07 Score=78.26 Aligned_cols=110 Identities=13% Similarity=0.137 Sum_probs=76.5
Q ss_pred eEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
+++|||+|..+...++.+..- -.+|++|+|++++.+.+.+. + +.++.+++++++++|+|++++|+.. -..+
T Consensus 131 ~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~Pv 209 (346)
T PRK07589 131 TMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NATI 209 (346)
T ss_pred EEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCce
Confidence 589999999999988777642 24799999999998876642 3 4457899999999999999997532 1122
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+. .+.+++|+.|.-..+..|...+--.+.+.+ .-.|+|.
T Consensus 210 l~-----~~~lkpG~hV~aIGs~~p~~~Eld~~~l~~-a~v~vD~ 248 (346)
T PRK07589 210 LT-----DDMVEPGMHINAVGGDCPGKTELHPDILRR-ARVFVEY 248 (346)
T ss_pred ec-----HHHcCCCcEEEecCCCCCCcccCCHHHHhc-CEEEECC
Confidence 31 134678998888877766543322333333 3356674
No 181
>PRK10206 putative oxidoreductase; Provisional
Probab=98.42 E-value=2.7e-06 Score=73.73 Aligned_cols=111 Identities=13% Similarity=0.150 Sum_probs=77.9
Q ss_pred CeEEEEecChhHH-HHHHHHHh--CCCeEE-EEcCCchhHHHHHHCC-CcccCCHHHHhh--hCCeEEEecCCHHHHHHH
Q 027255 1 MEVGFLGLGIMGK-AISMNLLR--NGFKVT-VWNRTLSKCDELVAHG-ATVGGSPAEVIK--KCTITIGMLADPAAALSV 73 (226)
Q Consensus 1 m~IgvIG~G~mG~-~~A~~l~~--~G~~V~-~~dr~~~~~~~l~~~g-~~~~~s~~~~~~--~advvi~~~p~~~~~~~v 73 (226)
+||||||+|.++. ..+..+.. .+++|. ++|+++++.+.....+ +..+++.+++++ +.|+|++|+|+..+.+.+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~ 81 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYA 81 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHH
Confidence 4899999999765 34554533 356764 7899986653333344 667889999996 479999999998887766
Q ss_pred hhcccccccccCCCcE-EEecC-CCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKG-YIDMS-TVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~i-vvd~s-t~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
. ..++.|+. +++-- +.+....++|.+.++++|+.+.-+
T Consensus 82 ~-------~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~ 121 (344)
T PRK10206 82 K-------RALEAGKNVLVEKPFTPTLAEAKELFALAKSKGLTVTPY 121 (344)
T ss_pred H-------HHHHcCCcEEEecCCcCCHHHHHHHHHHHHHhCCEEEEE
Confidence 5 44556654 44433 346788899999888888765444
No 182
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.42 E-value=3.5e-06 Score=71.53 Aligned_cols=111 Identities=18% Similarity=0.249 Sum_probs=89.3
Q ss_pred eEEEEecChhHHHHHHHHHh---CCCeEE-EEcCCchhHHHHHHC-CC---cccCCHHHHhhhC--CeEEEecCCHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR---NGFKVT-VWNRTLSKCDELVAH-GA---TVGGSPAEVIKKC--TITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~---~G~~V~-~~dr~~~~~~~l~~~-g~---~~~~s~~~~~~~a--dvvi~~~p~~~~~~ 71 (226)
|+||+|+|.|++-.++.|.- .+|.|. +++|+.+++.++++. ++ ++..|.+|++++. |+|.+..|++++.+
T Consensus 8 r~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~e 87 (351)
T KOG2741|consen 8 RWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYE 87 (351)
T ss_pred EEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHH
Confidence 79999999999999999863 478755 679999999888775 43 6788999999875 99999999998887
Q ss_pred HHhhcccccccccCCCc-EEEecCC-CCHHHHHHHHHHHHhcCCcEEecC
Q 027255 72 SVVFDKGGVLEQICPGK-GYIDMST-VDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~-ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
-+. ..+..++ ++++--. .+..+.+++-+.++++|+.++++-
T Consensus 88 vv~-------l~l~~~K~VL~EKPla~n~~e~~~iveaA~~rgv~~meg~ 130 (351)
T KOG2741|consen 88 VVM-------LALNKGKHVLCEKPLAMNVAEAEEIVEAAEARGVFFMEGL 130 (351)
T ss_pred HHH-------HHHHcCCcEEecccccCCHHHHHHHHHHHHHcCcEEEeee
Confidence 766 2233444 5565443 578899999999999999999884
No 183
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.42 E-value=1.2e-06 Score=76.99 Aligned_cols=115 Identities=28% Similarity=0.351 Sum_probs=79.4
Q ss_pred EEEEecChhHHHHHHHHHhCC-C-eEEEEcCCchhHHHHHHC--C--C-----cc--cCCHHHHhhhCCeEEEecCCHHH
Q 027255 3 VGFLGLGIMGKAISMNLLRNG-F-KVTVWNRTLSKCDELVAH--G--A-----TV--GGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~G-~-~V~~~dr~~~~~~~l~~~--g--~-----~~--~~s~~~~~~~advvi~~~p~~~~ 69 (226)
|.|||+|.+|+.+++.|++.+ + +|++.||+.++++++.+. + + .+ ..++.++++++|+||.|+|.. .
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~ 79 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-F 79 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-G
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-h
Confidence 789999999999999999886 4 899999999999988752 2 1 11 123567788999999999774 3
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-CCCCChH
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-PVSGSKQ 125 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-pv~g~~~ 125 (226)
-..++ ..++..|..+||.+- ......++.+.++++|+.+|-+ .+.-|..
T Consensus 80 ~~~v~------~~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 80 GEPVA------RACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp HHHHH------HHHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred hHHHH------HHHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 33444 245667889999332 3667778888888888876544 5554443
No 184
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.41 E-value=1.4e-06 Score=73.53 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=86.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
+++||||+|.+|+.+|+++...|-.|+.||.-.- .+...+.|++.. +.+|++..||+|.+.+|-.++.+.++. +.-
T Consensus 147 KTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin--~~t 222 (406)
T KOG0068|consen 147 KTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLN--DET 222 (406)
T ss_pred cEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccC--HHH
Confidence 4689999999999999999999988888875322 234555677764 799999999999999998888888874 245
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSK 111 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~ 111 (226)
+..+++|..||+++....-+...+-+.+..-
T Consensus 223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~sG 253 (406)
T KOG0068|consen 223 FAKMKKGVRIINVARGGVVDEPALVRALDSG 253 (406)
T ss_pred HHHhhCCcEEEEecCCceechHHHHHHHhcC
Confidence 6778999999999998777777777777553
No 185
>PRK06223 malate dehydrogenase; Reviewed
Probab=98.41 E-value=9.6e-07 Score=75.26 Aligned_cols=63 Identities=13% Similarity=0.194 Sum_probs=48.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHH----HC----C--Ccc--cCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELV----AH----G--ATV--GGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~----~~----g--~~~--~~s~~~~~~~advvi~~~ 64 (226)
|||+|||+|.||..+|..++..|+ +|.++|+++++.+... .. + .+. +.+. +.+++||+||++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~ 78 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITA 78 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECC
Confidence 689999999999999999999876 9999999887654322 11 1 122 3444 5678999999986
No 186
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=98.40 E-value=5.7e-07 Score=76.93 Aligned_cols=110 Identities=15% Similarity=0.262 Sum_probs=67.5
Q ss_pred eEEEEecChhHHHHHHHHHh-CC-CeEEEEcCCchhHHHHHHC----C--CcccCCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR-NG-FKVTVWNRTLSKCDELVAH----G--ATVGGSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~-~G-~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
+++|||+|..+...++.+.. .. .+|++|+|+++++++|.+. + +..+.++++++++||+|++|+|..... .+
T Consensus 130 ~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P~ 208 (313)
T PF02423_consen 130 TLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-PV 208 (313)
T ss_dssp EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-ES
T ss_pred eEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-cc
Confidence 68999999999999998875 33 4799999999998887653 3 346889999999999999999774411 23
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+. ...+++|.+|...++..|.. +++...+-++.-.++|.
T Consensus 209 ~~-----~~~l~~g~hi~~iGs~~~~~-~El~~~~~~~a~~~vd~ 247 (313)
T PF02423_consen 209 FD-----AEWLKPGTHINAIGSYTPGM-RELDDELLKRADIVVDS 247 (313)
T ss_dssp B------GGGS-TT-EEEE-S-SSTTB-ESB-HHHHHCSEEEESC
T ss_pred cc-----HHHcCCCcEEEEecCCCCch-hhcCHHHhccCCEEEcc
Confidence 31 14577999999888876643 23333333333334444
No 187
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=98.40 E-value=1e-06 Score=77.10 Aligned_cols=92 Identities=22% Similarity=0.364 Sum_probs=66.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc---c---CCHHHHhhhCCeEEEecCCHH-HHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV---G---GSPAEVIKKCTITIGMLADPA-AALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~---~---~s~~~~~~~advvi~~~p~~~-~~~~v 73 (226)
+|.|||+|.+|...++.+...|.+|+++||++++.+.+... +..+ . .++.+.+.++|+||.+++.+. ....+
T Consensus 169 ~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~l 248 (370)
T TIGR00518 169 DVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKL 248 (370)
T ss_pred eEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcC
Confidence 58999999999999999999999999999999988877654 3321 1 234567788999999974311 11111
Q ss_pred hhcccccccccCCCcEEEecCC
Q 027255 74 VFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st 95 (226)
+ . ......++++.+|||.+.
T Consensus 249 i-t-~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 249 V-S-NSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred c-C-HHHHhcCCCCCEEEEEec
Confidence 1 1 223355788999999874
No 188
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.38 E-value=1.4e-06 Score=77.61 Aligned_cols=119 Identities=24% Similarity=0.374 Sum_probs=82.2
Q ss_pred CeEEEEecChhHHHHHHHHHhC--------C--Ce-EEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--------G--FK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADP 67 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--------G--~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~ 67 (226)
++||+||+|.+|+.+++.|.++ | .+ +.+++|++++.+.+...+..++.++++++++ .|+|+.+++..
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~ 83 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI 83 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence 3799999999999999888653 3 34 4467998877543322345677889999864 69999988653
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE-EecCCCCChH
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF-LEAPVSGSKQ 125 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~-ld~pv~g~~~ 125 (226)
....+.+ ...++.|+.||.... ......+++.+.++++|+.+ .++-|.|+-|
T Consensus 84 ~~~~~~~------~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEasV~ggiP 137 (426)
T PRK06349 84 EPARELI------LKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAAVAGGIP 137 (426)
T ss_pred hHHHHHH------HHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEEeeccCc
Confidence 3222332 356778888886554 23456678888888889864 4676666644
No 189
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=98.35 E-value=1.5e-06 Score=69.15 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=64.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCc--c--cCC---HHHHhhhCCeEEEecCCH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GAT--V--GGS---PAEVIKKCTITIGMLADP 67 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~--~--~~s---~~~~~~~advvi~~~p~~ 67 (226)
+++.|+|. |.+|+.+++.|++.|++|++++|++++.+.+.+. +.. . ..+ ..++++++|+||.++|.+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g 108 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAG 108 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCC
Confidence 47899995 9999999999999999999999999988776542 221 1 122 246778899999999876
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~ 97 (226)
...... .....+++.+++|+.-..
T Consensus 109 ~~~~~~------~~~~~~~~~vv~D~~~~~ 132 (194)
T cd01078 109 VELLEK------LAWAPKPLAVAADVNAVP 132 (194)
T ss_pred ceechh------hhcccCceeEEEEccCCC
Confidence 531111 112344578899986543
No 190
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=98.35 E-value=1.5e-06 Score=76.21 Aligned_cols=66 Identities=30% Similarity=0.473 Sum_probs=56.3
Q ss_pred eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-CCc--ccCCHHHHhhhCCeEEEecCCH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-GAT--VGGSPAEVIKKCTITIGMLADP 67 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~~~~~~advvi~~~p~~ 67 (226)
++.|||+|.||.-.|++|..+| .+|++.||+.++++.++.. |+. ...+..+.+..+|+||+++..+
T Consensus 180 ~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 180 KVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAP 249 (414)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCC
Confidence 6899999999999999999999 6799999999999998775 533 3456677788999999997554
No 191
>PRK06199 ornithine cyclodeaminase; Validated
Probab=98.35 E-value=1.1e-06 Score=76.93 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=65.7
Q ss_pred eEEEEecChhHHHHHHHHHhC--C-CeEEEEcCCchhHHHHHHC------C---CcccCCHHHHhhhCCeEEEecCCHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRN--G-FKVTVWNRTLSKCDELVAH------G---ATVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~--G-~~V~~~dr~~~~~~~l~~~------g---~~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
+++|||+|.++....+.+..- . -+|++|+|++++.+.+.+. + +.++.++++++++||+|++|++..+.
T Consensus 157 ~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~ 236 (379)
T PRK06199 157 VVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETG 236 (379)
T ss_pred EEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCC
Confidence 689999999999999998762 2 3799999999998876542 2 45678999999999999999975331
Q ss_pred ---HHHHhhcccccccccCCCcEEEecCC
Q 027255 70 ---ALSVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 70 ---~~~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
..-++. .+.+++|+.|+..++
T Consensus 237 ~~s~~Pv~~-----~~~lkpG~hv~~ig~ 260 (379)
T PRK06199 237 DPSTYPYVK-----REWVKPGAFLLMPAA 260 (379)
T ss_pred CCCcCcEec-----HHHcCCCcEEecCCc
Confidence 112231 134678887765444
No 192
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=98.33 E-value=4.2e-06 Score=70.39 Aligned_cols=89 Identities=17% Similarity=0.193 Sum_probs=66.0
Q ss_pred CeEEEEecChhHHHHHHHHHh-CCCeEE-EEcCCchhH--HHHHHCCCcc-cCCHHHHhh--hCCeEEEecCCHHHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKC--DELVAHGATV-GGSPAEVIK--KCTITIGMLADPAAALSV 73 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~~~~~--~advvi~~~p~~~~~~~v 73 (226)
+||||||+|.||+.++..+.+ .++++. ++|+++++. +...+.|+.. ..+.+++++ +.|+|++++|+..+.+..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a 81 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHA 81 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHH
Confidence 589999999999999888775 456755 679888753 3344467754 457888875 478899999997776655
Q ss_pred hhcccccccccCCCcEEEecCCC
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
. ..++.|+.++|.+..
T Consensus 82 ~-------~al~aGk~VIdekPa 97 (285)
T TIGR03215 82 R-------LLAELGKIVIDLTPA 97 (285)
T ss_pred H-------HHHHcCCEEEECCcc
Confidence 4 456688888887754
No 193
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=98.33 E-value=2.9e-06 Score=69.25 Aligned_cols=108 Identities=16% Similarity=0.229 Sum_probs=71.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC---eEEEEcCC----chhH-------HHHHHC-CC-cccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF---KVTVWNRT----LSKC-------DELVAH-GA-TVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~---~V~~~dr~----~~~~-------~~l~~~-g~-~~~~s~~~~~~~advvi~~~ 64 (226)
++|.|+|+|.+|+.+|..|.+.|. +++++||+ .++. +.+.+. +. ....++.++++++|+||-++
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT 105 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVS 105 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCC
Confidence 478999999999999999999996 59999999 4543 233322 11 11136778888999999999
Q ss_pred CCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc-EEec
Q 027255 65 ADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH-FLEA 118 (226)
Q Consensus 65 p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~-~ld~ 118 (226)
|..-..++.+ +.+.++.++++.++-.+ +.+.+.+.+.|+. +.++
T Consensus 106 ~~G~~~~~~l-------~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~G 150 (226)
T cd05311 106 RPGVVKKEMI-------KKMAKDPIVFALANPVP---EIWPEEAKEAGADIVATG 150 (226)
T ss_pred CCCCCCHHHH-------HhhCCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEeC
Confidence 7432222333 44456778888874332 3455666666775 5554
No 194
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=2.7e-06 Score=69.35 Aligned_cols=68 Identities=19% Similarity=0.393 Sum_probs=53.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH--CCCcc---cCC----HHHH-hhhCCeEEEecCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA--HGATV---GGS----PAEV-IKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~--~g~~~---~~s----~~~~-~~~advvi~~~p~~~ 68 (226)
|+|.|||+|.+|..+|+.|.+.||+|.+.|++++++++... ....+ ..+ +.++ ++++|+++.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d~ 78 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGNDE 78 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCCH
Confidence 89999999999999999999999999999999999988554 33222 122 2233 456899999997743
No 195
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=98.32 E-value=2.6e-06 Score=72.71 Aligned_cols=66 Identities=17% Similarity=0.249 Sum_probs=50.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHH----HHHCC-----CcccCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAHG-----ATVGGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~----l~~~g-----~~~~~s~~~~~~~advvi~~~p~ 66 (226)
|||+|||+|.+|..+|..|+.+| ++|.++|+++++.+. +.... .....+..+.+++||+||++.+.
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~ 77 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGA 77 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCC
Confidence 89999999999999999999999 589999999887653 22111 11112334567899999999875
No 196
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=98.31 E-value=3.9e-06 Score=74.71 Aligned_cols=66 Identities=11% Similarity=0.199 Sum_probs=52.6
Q ss_pred CeEEEEecChhHHHHHH--HH----HhCCCeEEEEcCCchhHHHHHHC------------CCcccCCHHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIMGKAISM--NL----LRNGFKVTVWNRTLSKCDELVAH------------GATVGGSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~--~l----~~~G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~~~~~~advvi~ 62 (226)
|||+|||.|.||..++. .+ ..+|++|.+||+++++.+..... .+..+++..+++++||+||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 68999999999998665 34 44678999999999887765331 13457788899999999999
Q ss_pred ecCC
Q 027255 63 MLAD 66 (226)
Q Consensus 63 ~~p~ 66 (226)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9984
No 197
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=98.30 E-value=1.5e-06 Score=63.98 Aligned_cols=88 Identities=19% Similarity=0.248 Sum_probs=58.3
Q ss_pred eEEEEe-cChhHHHHHHHHHhCC-Ce-EEEEcCCchhHHHHHHC--------CCcccCCHHHHhhhCCeEEEecCCHHHH
Q 027255 2 EVGFLG-LGIMGKAISMNLLRNG-FK-VTVWNRTLSKCDELVAH--------GATVGGSPAEVIKKCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG-~G~mG~~~A~~l~~~G-~~-V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~advvi~~~p~~~~~ 70 (226)
||+||| .|.+|+.+.+.|.++- ++ +.++.++.+.-..+... ...+.....+.+.++|+||+|+|+. ..
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-AS 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HH
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HH
Confidence 799999 9999999999999853 34 55667666332223222 1223333344558999999999874 44
Q ss_pred HHHhhcccccccccCCCcEEEecCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
.+.. . ..+++|..|||.|+.
T Consensus 80 ~~~~---~---~~~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 80 KELA---P---KLLKAGIKVIDLSGD 99 (121)
T ss_dssp HHHH---H---HHHHTTSEEEESSST
T ss_pred HHHH---H---HHhhCCcEEEeCCHH
Confidence 4544 2 235688999999975
No 198
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=98.29 E-value=1.1e-05 Score=61.00 Aligned_cols=113 Identities=19% Similarity=0.220 Sum_probs=74.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|.+|+.++++|++.|+ +++++|.+.-....+..+ |...+....+.++ ..++-+...+....-
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 68999999999999999999997 699998775444344332 2222222333322 134444444321111
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
... ...+.+-.+||+++.. +.....+.+.+++.++.|+++.+.|
T Consensus 81 ~~~-------~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 81 DNL-------DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred hhH-------HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 011 1334466788888776 6678889999999999999998877
No 199
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=98.27 E-value=1.5e-06 Score=76.97 Aligned_cols=69 Identities=20% Similarity=0.235 Sum_probs=56.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-C-Cc--ccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G-AT--VGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g-~~--~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
++|.|||+|.||+.++++|...|. +++++||++++++.+.+. + .. ..++..+.+.++|+||.|++.+..
T Consensus 182 kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 182 KNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred CEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 379999999999999999999995 699999999999988774 3 32 234556778899999999987654
No 200
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=98.24 E-value=5.2e-06 Score=70.83 Aligned_cols=66 Identities=14% Similarity=0.189 Sum_probs=51.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC--------C--CcccCCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH--------G--ATVGGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~--------g--~~~~~s~~~~~~~advvi~~~p~ 66 (226)
+||+|||+|.+|+.+|..|+..| ++|.++|+++++++.+... + ........+.+++||+||++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~ 78 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGA 78 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCC
Confidence 58999999999999999999999 6899999999987655431 1 12222333457899999999864
No 201
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=98.24 E-value=4.3e-06 Score=69.08 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=59.3
Q ss_pred CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255 24 FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 24 ~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~ 97 (226)
++|++|+|++++.+.+.+. |+..+.+..++++++|+||+|++ +..+++++ ..+.+.+.++++||+++..-
T Consensus 10 ~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl---~~l~~~~~~~~~ivS~~agi 80 (245)
T TIGR00112 10 YDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVL---SELKSEKGKDKLLISIAAGV 80 (245)
T ss_pred CeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHH---HHHhhhccCCCEEEEecCCC
Confidence 6899999999999888664 88888899999999999999998 68899998 66766666778999987653
No 202
>PRK04148 hypothetical protein; Provisional
Probab=98.22 E-value=1.4e-05 Score=59.53 Aligned_cols=90 Identities=14% Similarity=0.132 Sum_probs=66.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-----cCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-----GGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|..||+| -|..+|..|.+.|++|++.|.++..++.+++.+..+ ....-+.-+++|.|..+-|.++..+.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~- 95 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFIL- 95 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHH-
Confidence 469999999 999999999999999999999999999888876543 3344466788999998888866555554
Q ss_pred cccccccccCCCcEEEecCC
Q 027255 76 DKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st 95 (226)
.+.......-+|.-++.
T Consensus 96 ---~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 96 ---ELAKKINVPLIIKPLSG 112 (134)
T ss_pred ---HHHHHcCCCEEEEcCCC
Confidence 34444434444444443
No 203
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.21 E-value=6.7e-06 Score=56.73 Aligned_cols=62 Identities=29% Similarity=0.356 Sum_probs=49.0
Q ss_pred CeEEEEecChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++++|+|.|.+|..++..|... +.+|++||| |++|.|++.+....+-
T Consensus 24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------ 71 (86)
T cd05191 24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------ 71 (86)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------
Confidence 3799999999999999999998 678999999 9999999875544331
Q ss_pred cccccCCCcEEEecC
Q 027255 80 VLEQICPGKGYIDMS 94 (226)
Q Consensus 80 l~~~l~~g~ivvd~s 94 (226)
....+.++.+|+|++
T Consensus 72 ~~~~~~~~~~v~~~a 86 (86)
T cd05191 72 ATAKINEGAVVIDLA 86 (86)
T ss_pred HHHhcCCCCEEEecC
Confidence 113456788888864
No 204
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=98.21 E-value=5.4e-06 Score=71.89 Aligned_cols=89 Identities=19% Similarity=0.281 Sum_probs=59.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-C----CC---ccc-CCHHHHhhhCCeEEEecCCHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-H----GA---TVG-GSPAEVIKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-~----g~---~~~-~s~~~~~~~advvi~~~p~~~ 68 (226)
|||+|||+ |.+|..+.+.|.++ ++++. +++++.+.-+.+.. . +. ... .+.+++.+++|+||+|+|+..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~~ 80 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHGV 80 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCchH
Confidence 79999998 99999999999976 56777 55654432222221 1 11 111 145566668999999999964
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+ +++. . .....|..|||.|+.
T Consensus 81 s-~~~~---~---~~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 81 S-AELA---P---ELLAAGVKVIDLSAD 101 (346)
T ss_pred H-HHHH---H---HHHhCCCEEEeCChh
Confidence 4 4443 2 223478999999974
No 205
>PTZ00117 malate dehydrogenase; Provisional
Probab=98.21 E-value=9.8e-06 Score=69.52 Aligned_cols=63 Identities=13% Similarity=0.208 Sum_probs=47.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHH----H----CC--Cc--ccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELV----A----HG--AT--VGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~----~----~g--~~--~~~s~~~~~~~advvi~~~ 64 (226)
+||+|||+|.||..+|..++..| .++.++|+++++.+... . .+ .. ...+.+ .+++||+|+++.
T Consensus 6 ~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 6 KKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 58999999999999999999988 68999999887543211 1 01 12 234555 779999999998
No 206
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=98.20 E-value=1.2e-05 Score=68.00 Aligned_cols=110 Identities=11% Similarity=0.170 Sum_probs=75.0
Q ss_pred CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhH--HHHHHCCCcc-cCCHHHHhh-----hCCeEEEecCCHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKC--DELVAHGATV-GGSPAEVIK-----KCTITIGMLADPAAA 70 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~~~~~-----~advvi~~~p~~~~~ 70 (226)
+||||||+|.+|+.+...+.+. +.++. ++|++++.. ....+.|+.. ..+.+++++ +.|+||.++|...+.
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~ 84 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHV 84 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHH
Confidence 4799999999999988887754 56654 679988642 3444568765 477888885 478899999886655
Q ss_pred HHHhhcccccccccCCCcEEEecCCCC------HHHHHHHHHHHHhcCCcEEecC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVD------HETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~------~~~~~~l~~~~~~~g~~~ld~p 119 (226)
+... ...+.|+.+||.+... |+...+ +.....+..++.+|
T Consensus 85 e~a~-------~a~eaGk~VID~sPA~~~PlvVP~VN~~--~~~~~~~~~iia~p 130 (302)
T PRK08300 85 RHAA-------KLREAGIRAIDLTPAAIGPYCVPAVNLD--EHLDAPNVNMVTCG 130 (302)
T ss_pred HHHH-------HHHHcCCeEEECCccccCCcccCcCCHH--HHhcccCCCEEECc
Confidence 5443 3456899999988643 222211 12223456777777
No 207
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=98.20 E-value=3.5e-06 Score=61.58 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=72.1
Q ss_pred CeEEEEe----cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLG----LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG----~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
++|+||| .+.+|..+.++|.++|++|+..|...+.+ .|...+.++.|.-...|++++++|. +.+.+++
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-- 72 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-- 72 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH--
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH--
Confidence 4799999 79999999999999999999998877543 4777888999844789999999976 5666776
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+++.+ +..+.+++..+ ...+++.+.+++.|+.++.-
T Consensus 73 -~~~~~-~g~~~v~~~~g----~~~~~~~~~a~~~gi~vigp 108 (116)
T PF13380_consen 73 -DEAAA-LGVKAVWLQPG----AESEELIEAAREAGIRVIGP 108 (116)
T ss_dssp -HHHHH-HT-SEEEE-TT----S--HHHHHHHHHTT-EEEES
T ss_pred -HHHHH-cCCCEEEEEcc----hHHHHHHHHHHHcCCEEEeC
Confidence 54433 23566777666 44556777778889988744
No 208
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=98.19 E-value=6.6e-06 Score=69.40 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=74.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-C----CcccC---CHHHHhhhCCeEEEecCCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-G----ATVGG---SPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g----~~~~~---s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
++.|||+|.++++++..|...|. +|+++||++++.+.+.+. + +.... +..+...++|+||.|+|.......
T Consensus 127 ~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~ 206 (282)
T TIGR01809 127 RGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADY 206 (282)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCH
Confidence 68899999999999999999996 699999999999988764 1 11122 223445679999999986432211
Q ss_pred H-hhcccc--cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 73 V-VFDKGG--VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 73 v-~~~~~~--l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
. +..... ....+.++.+++|+--. |..+ .+.+.++++|+..+++
T Consensus 207 ~~l~~~~~~~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~G 253 (282)
T TIGR01809 207 VDLFATVPFLLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVISG 253 (282)
T ss_pred HHhhhhhhhhccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEECc
Confidence 1 100000 00123467788898643 3222 3455566778777655
No 209
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=98.18 E-value=8.7e-06 Score=72.86 Aligned_cols=69 Identities=17% Similarity=0.204 Sum_probs=55.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-CCCccc-------CCHHHH-hhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-HGATVG-------GSPAEV-IKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-~g~~~~-------~s~~~~-~~~advvi~~~p~~~~ 69 (226)
|+|.|+|+|.+|..+++.|.+.|++|+++++++++.+.+.+ .+.... ..+.++ ++++|.|+++++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~~ 78 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDET 78 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChHH
Confidence 89999999999999999999999999999999999988876 443221 122333 5679999999987543
No 210
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=98.18 E-value=7.7e-06 Score=66.75 Aligned_cols=93 Identities=20% Similarity=0.309 Sum_probs=74.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC----eEEEEcCCchhHHH-HHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF----KVTVWNRTLSKCDE-LVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~----~V~~~dr~~~~~~~-l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
|+|||||.|+|..++++.+.+.|. +++.+-.+...... +...|+..+.+-.+.++.+|++++++ .+..+..++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~sv-Kp~~i~~vl- 78 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSV-KPQVIESVL- 78 (267)
T ss_pred CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEee-cchhHHHHh-
Confidence 799999999999999999999984 56666664333333 67778887777799999999999999 558899998
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
.++...+..+++++..--..
T Consensus 79 --s~~~~~~~~~~iivS~aaG~ 98 (267)
T KOG3124|consen 79 --SEIKPKVSKGKIIVSVAAGK 98 (267)
T ss_pred --hcCccccccceEEEEEeecc
Confidence 66766677888998876543
No 211
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=98.16 E-value=7.7e-06 Score=70.88 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=57.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-CCeEEE-EcCCchhHHHHHHC-----CC--cccCCHHH-HhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTV-WNRTLSKCDELVAH-----GA--TVGGSPAE-VIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~-~dr~~~~~~~l~~~-----g~--~~~~s~~~-~~~~advvi~~~p~~~~ 69 (226)
|||+|||+ |.+|..+++.|.++ ++++.. .+|. +..+.+.+. +. ....+.++ ..+++|+||+|+|+..+
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH
Confidence 58999997 99999999999976 577654 5543 332223211 11 01222222 45679999999999655
Q ss_pred HHHHhhcccccccccCCCcEEEecCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
.+.+. ..++.|+.|||.|+.
T Consensus 82 ~~~v~-------~a~~aG~~VID~S~~ 101 (343)
T PRK00436 82 MDLAP-------QLLEAGVKVIDLSAD 101 (343)
T ss_pred HHHHH-------HHHhCCCEEEECCcc
Confidence 44443 334578999999974
No 212
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.15 E-value=1.3e-05 Score=69.41 Aligned_cols=70 Identities=19% Similarity=0.339 Sum_probs=51.3
Q ss_pred CeEEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-------------------CCCcccCCHHHHhhhCCe
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-------------------HGATVGGSPAEVIKKCTI 59 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-------------------~g~~~~~s~~~~~~~adv 59 (226)
+||||+|+|.||+.+++.+.++ +++|. +++++++....+.. .++.+..++.++.+++|+
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV 81 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI 81 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence 5899999999999999998864 56755 56777655444333 134445677888888999
Q ss_pred EEEecCCHHHH
Q 027255 60 TIGMLADPAAA 70 (226)
Q Consensus 60 vi~~~p~~~~~ 70 (226)
|+.|+|.....
T Consensus 82 VIdaT~~~~~~ 92 (341)
T PRK04207 82 VVDATPGGVGA 92 (341)
T ss_pred EEECCCchhhH
Confidence 99999885443
No 213
>PRK06270 homoserine dehydrogenase; Provisional
Probab=98.14 E-value=2.4e-05 Score=67.78 Aligned_cols=122 Identities=19% Similarity=0.243 Sum_probs=78.9
Q ss_pred CeEEEEecChhHHHHHHHHHhC----------CCeEE-EEcCC----------chhHHHHHHC-CC-c------ccCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN----------GFKVT-VWNRT----------LSKCDELVAH-GA-T------VGGSPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~----------G~~V~-~~dr~----------~~~~~~l~~~-g~-~------~~~s~~ 51 (226)
++|+++|+|.||+.+++.|.++ +.+|. ++|++ .+++..+.+. +. . ...++.
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 4799999999999999999765 34543 56753 3344444332 21 1 124778
Q ss_pred HHhh--hCCeEEEecCCHHHH----HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEE-ecCCCCC
Q 027255 52 EVIK--KCTITIGMLADPAAA----LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFL-EAPVSGS 123 (226)
Q Consensus 52 ~~~~--~advvi~~~p~~~~~----~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~l-d~pv~g~ 123 (226)
++++ +.|+|+.|+|+..+. .+. +...+..|+.||..++. ......++.+.++++|+.+. .+.|.++
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~------~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ea~v~~g 156 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSH------CRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRYEATVGGA 156 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHH------HHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEEeeeeeec
Confidence 8874 579999999874331 222 23556788888876542 12245678888888888764 6777766
Q ss_pred hHhhc
Q 027255 124 KQPAE 128 (226)
Q Consensus 124 ~~~a~ 128 (226)
-|...
T Consensus 157 lPii~ 161 (341)
T PRK06270 157 MPIIN 161 (341)
T ss_pred hhHHH
Confidence 55443
No 214
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=98.12 E-value=3.7e-05 Score=70.85 Aligned_cols=109 Identities=18% Similarity=0.245 Sum_probs=72.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHH-----hhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEV-----IKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~-----~~~advvi~~~p~~~~~~~v 73 (226)
+|-|+|+|.+|+.+|+.|.++|++|.++|.|+++++++.+.|..+. .+..+. ++++|.++++++++.....+
T Consensus 419 hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~i 498 (558)
T PRK10669 419 HALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEI 498 (558)
T ss_pred CEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHH
Confidence 4779999999999999999999999999999999999988875431 112222 35789999999886655444
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
. ...... .+...++-.. .+++..+ .+++.|+.++=.|
T Consensus 499 v---~~~~~~-~~~~~iiar~-~~~~~~~----~l~~~Gad~vv~p 535 (558)
T PRK10669 499 V---ASAREK-RPDIEIIARA-HYDDEVA----YITERGANQVVMG 535 (558)
T ss_pred H---HHHHHH-CCCCeEEEEE-CCHHHHH----HHHHcCCCEEECh
Confidence 4 222222 2333333222 2343333 3455677765544
No 215
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=98.12 E-value=9.8e-06 Score=68.93 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=46.1
Q ss_pred EEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHH----HHHC----C----CcccCCHHHHhhhCCeEEEecC
Q 027255 3 VGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE----LVAH----G----ATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~----l~~~----g----~~~~~s~~~~~~~advvi~~~p 65 (226)
|+|||+|.||..+|..++.+|+ +|+++|+++++.+. +... + ++...+. +.+++||+||++..
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence 6899999999999999998876 99999999876432 1111 1 1223444 55789999999773
No 216
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=1.3e-05 Score=67.41 Aligned_cols=73 Identities=18% Similarity=0.285 Sum_probs=59.7
Q ss_pred CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
.+|.|||.|. +|.++|..|...|..|+++++.. .++.+.+++||+||.+++.+..+..
T Consensus 159 k~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~------- 217 (286)
T PRK14175 159 KNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK------- 217 (286)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH-------
Confidence 3789999988 99999999999999999998753 3567888999999999988543221
Q ss_pred cccccCCCcEEEecCCC
Q 027255 80 VLEQICPGKGYIDMSTV 96 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~ 96 (226)
+.+++|.+|||.++.
T Consensus 218 --~~vk~gavVIDvGi~ 232 (286)
T PRK14175 218 --DVVKEGAVIIDVGNT 232 (286)
T ss_pred --HHcCCCcEEEEcCCC
Confidence 246789999999874
No 217
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=98.11 E-value=4.7e-06 Score=63.04 Aligned_cols=65 Identities=17% Similarity=0.326 Sum_probs=51.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~~advvi~~~p 65 (226)
|||+|||+ |..|..+|..|...+. ++.++|+++++++..... .........+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 89999999 9999999999998874 799999998766543211 23344466777889999999863
No 218
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=98.08 E-value=0.0001 Score=53.35 Aligned_cols=72 Identities=26% Similarity=0.424 Sum_probs=55.5
Q ss_pred EEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc----CCHHHH----hhhCCeEEEecCCHHHHHHHh
Q 027255 3 VGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG----GSPAEV----IKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~~~----~~~advvi~~~p~~~~~~~v~ 74 (226)
|-|+|+|.+|..+++.|.+.+.+|.+.++++++.+.+.+.|..+. .++..+ +++++.|+++++++.....+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~ 80 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIA 80 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHH
Confidence 568999999999999999977799999999999999999885441 222222 356899999998876554444
No 219
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=98.07 E-value=2.1e-05 Score=57.34 Aligned_cols=102 Identities=17% Similarity=0.196 Sum_probs=69.6
Q ss_pred ecChhHHHHHHHHHhC----CCeE-EEEcCC--chhHHHHHHCCCcccCCHHHHhh--hCCeEEEecCCHHHHHHHhhcc
Q 027255 7 GLGIMGKAISMNLLRN----GFKV-TVWNRT--LSKCDELVAHGATVGGSPAEVIK--KCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 7 G~G~mG~~~A~~l~~~----G~~V-~~~dr~--~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~~~~ 77 (226)
|+|.+|+.+++.|.++ +++| .+++|+ .+....-...+...+.+++++++ ..|+||-|.+. +.+.+.+
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~-~~~~~~~--- 76 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSS-EAVAEYY--- 76 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSC-HHHHHHH---
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCc-hHHHHHH---
Confidence 8999999999999986 4564 467888 22222222235667889999988 89999999766 5565555
Q ss_pred cccccccCCCcEEEecCCC---CHHHHHHHHHHHHhcCCcE
Q 027255 78 GGVLEQICPGKGYIDMSTV---DHETSIKISRAITSKGGHF 115 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~---~~~~~~~l~~~~~~~g~~~ 115 (226)
.+.++.|..||..|.. ++...++|.+.+++.|.++
T Consensus 77 ---~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 77 ---EKALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp ---HHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred ---HHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 3566789999998864 4457788888888888765
No 220
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.05 E-value=6.6e-05 Score=60.22 Aligned_cols=110 Identities=21% Similarity=0.245 Sum_probs=70.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC-C-HHHHhhhCCeEEEecCCHHHHHHHhh-
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG-S-PAEVIKKCTITIGMLADPAAALSVVF- 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s-~~~~~~~advvi~~~p~~~~~~~v~~- 75 (226)
++|.|||.|.+|...++.|.+.|++|++++++.. .+..+...+ +.... . ..+.+.++|+||.++.+++.-..+..
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN~~i~~~ 90 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVNEQVKED 90 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHHHHHHHH
Confidence 4789999999999999999999999999987653 334554443 22211 1 12345789999999977543332221
Q ss_pred -cccccc--------------cccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255 76 -DKGGVL--------------EQICPGKGYIDMST--VDHETSIKISRAITS 110 (226)
Q Consensus 76 -~~~~l~--------------~~l~~g~ivvd~st--~~~~~~~~l~~~~~~ 110 (226)
....+. .....|.+.|-.|| .+|..++.+.+.+.+
T Consensus 91 a~~~~lvn~~d~~~~~~f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~ 142 (202)
T PRK06718 91 LPENALFNVITDAESGNVVFPSALHRGKLTISVSTDGASPKLAKKIRDELEA 142 (202)
T ss_pred HHhCCcEEECCCCccCeEEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 000111 11234666666665 488888888887765
No 221
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=98.04 E-value=1.9e-05 Score=66.40 Aligned_cols=110 Identities=24% Similarity=0.305 Sum_probs=76.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC----CCc-ccCCHHHH--hhhCCeEEEecCCHHHHHH-
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----GAT-VGGSPAEV--IKKCTITIGMLADPAAALS- 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~----g~~-~~~s~~~~--~~~advvi~~~p~~~~~~~- 72 (226)
++.|+|+|.++++++..|++.|. +++++||+.++.+++.+. +.. ......+. .+++|+||-++|-.-.-..
T Consensus 128 ~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~~ 207 (283)
T COG0169 128 RVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEG 207 (283)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCCC
Confidence 58999999999999999999995 799999999999988764 211 11222222 1258999999986433221
Q ss_pred --HhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 73 --VVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 73 --v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.+ . ...++++.++.|+--.... + .+.++++++|...+|+
T Consensus 208 ~~~~----~-~~~l~~~~~v~D~vY~P~~-T-plL~~A~~~G~~~idG 248 (283)
T COG0169 208 DSPV----P-AELLPKGAIVYDVVYNPLE-T-PLLREARAQGAKTIDG 248 (283)
T ss_pred CCCC----c-HHhcCcCCEEEEeccCCCC-C-HHHHHHHHcCCeEECc
Confidence 11 1 3457788999998654322 2 3566777888887776
No 222
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=98.04 E-value=6.4e-05 Score=69.89 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=74.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc---CCHHHH-----hhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG---GSPAEV-----IKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~~~-----~~~advvi~~~p~~~~~~~v 73 (226)
+|-|+|.|.+|+.+++.|.++|+++++.|.|+++++.+.+.|..+. .+-.+. ++++|.+++++++++....+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i 481 (601)
T PRK03659 402 QVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKI 481 (601)
T ss_pred CEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHH
Confidence 5889999999999999999999999999999999999988875431 122222 35789999999997766555
Q ss_pred hhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+ ....+ ..|...++--+ .++.. .+.+.+.|+..+--
T Consensus 482 ~---~~~r~-~~p~~~IiaRa-~~~~~----~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 482 V---ELCQQ-HFPHLHILARA-RGRVE----AHELLQAGVTQFSR 517 (601)
T ss_pred H---HHHHH-HCCCCeEEEEe-CCHHH----HHHHHhCCCCEEEc
Confidence 5 22333 33443333322 23333 34555668776543
No 223
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=98.03 E-value=4.2e-05 Score=65.67 Aligned_cols=63 Identities=14% Similarity=0.220 Sum_probs=47.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHH--HH---HH---CC----CcccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCD--EL---VA---HG----ATVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~--~l---~~---~g----~~~~~s~~~~~~~advvi~~~ 64 (226)
+||+|||+|.||..+|..++..|+ +|.++|+++++++ .+ .. .+ +..+.+. +.+++||+||++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 489999999999999999999995 8999999998542 11 11 11 2223455 5779999999965
No 224
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=98.02 E-value=9.1e-06 Score=63.31 Aligned_cols=65 Identities=23% Similarity=0.213 Sum_probs=51.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~~~~~~advvi~~~p 65 (226)
|||+|||+ |..|+.+++-..+.||+|+.+-||++++..++.. .+---++..+.+.+-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEecc
Confidence 89999998 9999999999999999999999999998654221 12112344577788999999863
No 225
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.99 E-value=1.2e-05 Score=64.55 Aligned_cols=92 Identities=15% Similarity=0.242 Sum_probs=70.3
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH-----------HCC--------------CcccCCHHHHhhh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV-----------AHG--------------ATVGGSPAEVIKK 56 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~~~~~~ 56 (226)
||+|+|.|..|+.+|..++..||+|.+||..++.+.... +.| +..++++.|++++
T Consensus 5 ki~ivgSgl~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~ 84 (313)
T KOG2305|consen 5 KIAIVGSGLVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKG 84 (313)
T ss_pred ceeEeecccccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhh
Confidence 799999999999999999999999999999988754321 222 3557899999999
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+=.|-.|+|.+-.++.-++ .++-+.+ ..+.|+..||+
T Consensus 85 Ai~iQEcvpE~L~lkk~ly--~qlD~i~-d~~tIlaSSTS 121 (313)
T KOG2305|consen 85 AIHIQECVPEDLNLKKQLY--KQLDEIA-DPTTILASSTS 121 (313)
T ss_pred hhhHHhhchHhhHHHHHHH--HHHHHhc-CCceEEecccc
Confidence 9888899999877776664 3343334 44555555554
No 226
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=97.98 E-value=3.8e-05 Score=69.48 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=66.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-CC--------------------------HHHHh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GS--------------------------PAEVI 54 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--------------------------~~~~~ 54 (226)
|+.|+|+|.+|...+..+...|..|+++|+++++.+.+...|.... -+ ..+.+
T Consensus 166 kVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~ 245 (511)
T TIGR00561 166 KVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQA 245 (511)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999888877775430 01 23445
Q ss_pred hhCCeEEEec-----CCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255 55 KKCTITIGML-----ADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 55 ~~advvi~~~-----p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
+++|+||.++ |.+.-+. ++..+.+++|.+|||.+.
T Consensus 246 ~~~DIVI~TalipG~~aP~Lit------~emv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 246 KEVDIIITTALIPGKPAPKLIT------EEMVDSMKAGSVIVDLAA 285 (511)
T ss_pred CCCCEEEECcccCCCCCCeeeh------HHHHhhCCCCCEEEEeee
Confidence 7799999988 4431111 223467888999998874
No 227
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=97.98 E-value=4.1e-05 Score=62.51 Aligned_cols=107 Identities=18% Similarity=0.201 Sum_probs=71.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEE-EEcC----------CchhHHHHHHC-C-------CcccCCHHHHh-hhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNR----------TLSKCDELVAH-G-------ATVGGSPAEVI-KKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr----------~~~~~~~l~~~-g-------~~~~~s~~~~~-~~advv 60 (226)
++|.|.|+|++|+.+|+.|.+.|.+|+ +.|. +.+.+.++.+. | .... +.++.. .+||++
T Consensus 32 ~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvl 110 (227)
T cd01076 32 ARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDIL 110 (227)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEE
Confidence 589999999999999999999999988 6677 66666655443 2 1111 223322 368999
Q ss_pred EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+-|.+.+....+.+ . .+ +=++|+...+. |-+ .+..+.++++|+.|+.-
T Consensus 111 ip~a~~~~i~~~~~---~----~l-~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 111 IPAALENQITADNA---D----RI-KAKIIVEAANG-PTT-PEADEILHERGVLVVPD 158 (227)
T ss_pred EecCccCccCHHHH---h----hc-eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEECh
Confidence 99987755444444 2 23 23456665554 333 55677888999988654
No 228
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.97 E-value=3.4e-05 Score=64.76 Aligned_cols=74 Identities=20% Similarity=0.319 Sum_probs=60.2
Q ss_pred CeEEEEecChh-HHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIM-GKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~m-G~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||.|.. |.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+..+..
T Consensus 159 k~vvViGrs~iVGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~i~~------- 217 (285)
T PRK14189 159 AHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNVLTA------- 217 (285)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCccCH-------
Confidence 37899999988 999999999999999998653 24677888999999999997542211
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
..+++|.++||.++..
T Consensus 218 --~~ik~gavVIDVGin~ 233 (285)
T PRK14189 218 --DMVKPGATVIDVGMNR 233 (285)
T ss_pred --HHcCCCCEEEEccccc
Confidence 5578999999998753
No 229
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=97.97 E-value=1.6e-05 Score=61.87 Aligned_cols=93 Identities=24% Similarity=0.198 Sum_probs=64.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--------------------------CHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--------------------------SPAEVI 54 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--------------------------s~~~~~ 54 (226)
.+|.|+|.|..|..-++.+...|++|+++|.++++.+.+...+..... .+.+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i 100 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFI 100 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHH
Confidence 379999999999999999999999999999999988887776532211 244666
Q ss_pred hhCCeEEEecC-CHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255 55 KKCTITIGMLA-DPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 55 ~~advvi~~~p-~~~~~~~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
+.+|+||.+.- .......++. ++-.+.++++.+|+|.|.
T Consensus 101 ~~~d~vI~~~~~~~~~~P~lvt--~~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 101 APADIVIGNGLYWGKRAPRLVT--EEMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HH-SEEEEHHHBTTSS---SBE--HHHHHTSSTTEEEEETTG
T ss_pred hhCcEEeeecccCCCCCCEEEE--hHHhhccCCCceEEEEEe
Confidence 78999997542 2222222221 233466889999999874
No 230
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.92 E-value=5.1e-05 Score=64.26 Aligned_cols=112 Identities=13% Similarity=0.069 Sum_probs=71.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCc---hhHHHHHH----CC--Ccc--c--C---CHHHHhhhCCeEEEec
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL---SKCDELVA----HG--ATV--G--G---SPAEVIKKCTITIGML 64 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~---~~~~~l~~----~g--~~~--~--~---s~~~~~~~advvi~~~ 64 (226)
++.|+|.|.+|++++..|++.|.+ |++++|++ ++.+++.+ .+ +.. + . +..+.++.+|+||.++
T Consensus 128 ~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaT 207 (289)
T PRK12548 128 KLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNAT 207 (289)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeC
Confidence 578999999999999999999986 99999997 56655433 11 111 1 1 1233456789999999
Q ss_pred CCHHH--HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 65 ADPAA--ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 65 p~~~~--~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
|-.-. .....+ .-...+.++.+++|+.-.... -.+.+.++++|+..+++
T Consensus 208 p~Gm~~~~~~~~~---~~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~G 258 (289)
T PRK12548 208 LVGMKPNDGETNI---KDTSVFRKDLVVADTVYNPKK--TKLLEDAEAAGCKTVGG 258 (289)
T ss_pred CCCCCCCCCCCCC---CcHHhcCCCCEEEEecCCCCC--CHHHHHHHHCCCeeeCc
Confidence 85321 000000 001346678899998754322 23556667778776665
No 231
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=97.92 E-value=4.9e-05 Score=63.43 Aligned_cols=62 Identities=16% Similarity=0.327 Sum_probs=48.9
Q ss_pred EEEEec-ChhHHHHHHHHHhCC----CeEEEEcCCchhHHHHHH-----------CCCcccCCHHHHhhhCCeEEEec
Q 027255 3 VGFLGL-GIMGKAISMNLLRNG----FKVTVWNRTLSKCDELVA-----------HGATVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 3 IgvIG~-G~mG~~~A~~l~~~G----~~V~~~dr~~~~~~~l~~-----------~g~~~~~s~~~~~~~advvi~~~ 64 (226)
|+|||+ |.||..++..|+..| .+|.++|+++++++.... ..+..++++.+++++||+|+++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 689999 999999999999988 789999999876554322 12233556688899999999954
No 232
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.89 E-value=5.1e-05 Score=64.01 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=73.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-----CC--cccCCH---HHHhhhCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----GA--TVGGSP---AEVIKKCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----g~--~~~~s~---~~~~~~advvi~~~p~~~~~ 70 (226)
++.|+|+|..+++++..|.+.|. +|+++||++++.+.+.+. +. ....+. .+...++|+||-++|-.-.-
T Consensus 129 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm~~ 208 (283)
T PRK14027 129 SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPA 208 (283)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCCCC
Confidence 68899999999999999999986 699999999999888653 11 111222 33456799999999853210
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
..-. +-. ...+.++.+++|+--.... + .+.+.++++|+..+|+
T Consensus 209 ~~~~--~~~-~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~G 251 (283)
T PRK14027 209 HPGT--AFD-VSCLTKDHWVGDVVYMPIE-T-ELLKAARALGCETLDG 251 (283)
T ss_pred CCCC--CCC-HHHcCCCcEEEEcccCCCC-C-HHHHHHHHCCCEEEcc
Confidence 0000 000 1235677889998653222 2 3455667778877665
No 233
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=97.88 E-value=9.1e-05 Score=63.31 Aligned_cols=64 Identities=23% Similarity=0.350 Sum_probs=46.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCc--hhHHHH----H----HCC--Ccc--cCCHHHHhhhCCeEEEe
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTL--SKCDEL----V----AHG--ATV--GGSPAEVIKKCTITIGM 63 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~--~~~~~l----~----~~g--~~~--~~s~~~~~~~advvi~~ 63 (226)
|||+|||+ |..|..++..|+..|+ +|+++||++ ++++.. . ..+ ... ..+. +.++++|+||++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 89999998 9999999999999987 499999965 433221 1 112 122 3344 558999999999
Q ss_pred cC
Q 027255 64 LA 65 (226)
Q Consensus 64 ~p 65 (226)
..
T Consensus 80 ag 81 (309)
T cd05294 80 AG 81 (309)
T ss_pred cC
Confidence 85
No 234
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.87 E-value=0.00011 Score=62.85 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=49.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHH----C-----CCcccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVA----H-----GATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~----~-----g~~~~~s~~~~~~~advvi~~~p 65 (226)
+||+|||+|.+|..+|..|+..|. ++.++|++.++++.... . ......+.-+.+++||+||++.-
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 589999999999999999999886 79999998887544321 1 22333344566799999999753
No 235
>PRK14982 acyl-ACP reductase; Provisional
Probab=97.87 E-value=3.8e-05 Score=66.18 Aligned_cols=109 Identities=23% Similarity=0.244 Sum_probs=75.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-C-CeEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-G-FKVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
++|.|+|+ |.||+.+++.|..+ | .++++++|++++...+... +.....+..+++.++|+|+.+...+.. +...
T Consensus 156 k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~~---~~I~ 232 (340)
T PRK14982 156 ATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPKG---VEID 232 (340)
T ss_pred CEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCcC---CcCC
Confidence 47999998 89999999999854 5 5899999999888887654 211223577888899999988754332 2111
Q ss_pred ccccccccCCCcEEEecCC---CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 77 KGGVLEQICPGKGYIDMST---VDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st---~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
+ +.++++.++||.+- +.|.. .+.|+.++|+.+.--|
T Consensus 233 ~----~~l~~~~~viDiAvPRDVd~~v--------~~~~V~v~~gG~V~~p 271 (340)
T PRK14982 233 P----ETLKKPCLMIDGGYPKNLDTKV--------QGPGIHVLKGGIVEHS 271 (340)
T ss_pred H----HHhCCCeEEEEecCCCCCCccc--------CCCCEEEEeCCccccC
Confidence 1 34468899999874 34322 2357888886554433
No 236
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=97.85 E-value=7.8e-05 Score=67.57 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=65.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc--CC---------------HH----------HHh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG--GS---------------PA----------EVI 54 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s---------------~~----------~~~ 54 (226)
||.|||+|.+|...+..+...|.+|+++|+++++.+...+.|++.. +. .+ +.+
T Consensus 167 kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~ 246 (509)
T PRK09424 167 KVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA 246 (509)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence 7999999999999999999999999999999999998888887632 11 01 112
Q ss_pred hhCCeEEEecCCHH-----H-HHHHhhcccccccccCCCcEEEecCC
Q 027255 55 KKCTITIGMLADPA-----A-ALSVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 55 ~~advvi~~~p~~~-----~-~~~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
+++|+||.|...+. . .++.+ +.+++|.+|+|.+.
T Consensus 247 ~gaDVVIetag~pg~~aP~lit~~~v-------~~mkpGgvIVdvg~ 286 (509)
T PRK09424 247 KEVDIIITTALIPGKPAPKLITAEMV-------ASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCEEEECCCCCcccCcchHHHHHH-------HhcCCCCEEEEEcc
Confidence 46899999985422 2 24443 66778888888775
No 237
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=97.85 E-value=0.00017 Score=58.46 Aligned_cols=110 Identities=17% Similarity=0.145 Sum_probs=69.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCe-EEEEcCCc----------hhHHHHHHCC-CcccC-----CHHHHh-hhCCeEEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTL----------SKCDELVAHG-ATVGG-----SPAEVI-KKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~----------~~~~~l~~~g-~~~~~-----s~~~~~-~~advvi~ 62 (226)
++|.|.|+|++|+.+|+.|.+.|.. |.+.|.+. +.++...+.+ +...+ +.+++. .+||+++.
T Consensus 24 ~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlip 103 (217)
T cd05211 24 LTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAP 103 (217)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEee
Confidence 5899999999999999999999885 66789887 6665554442 22211 112322 36899999
Q ss_pred ecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (226)
Q Consensus 63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv 120 (226)
|.+.+....+.. ..+ +=++|+...+. |.+. +..+.+.++|+.|+.--+
T Consensus 104 aA~~~~i~~~~a-------~~l-~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd~~ 151 (217)
T cd05211 104 CALGNVIDLENA-------KKL-KAKVVAEGANN-PTTD-EALRILHERGIVVAPDIV 151 (217)
T ss_pred ccccCccChhhH-------hhc-CccEEEeCCCC-CCCH-HHHHHHHHCCcEEEChHH
Confidence 987753332222 223 23455555543 3222 567788889988765433
No 238
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=97.83 E-value=5.8e-05 Score=58.92 Aligned_cols=62 Identities=27% Similarity=0.446 Sum_probs=50.6
Q ss_pred EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~ 66 (226)
|.|+|. |.+|+.+++.|.+.||+|++..|++++.+. ..++++ ..+..++++++|+||.+++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 679996 999999999999999999999999998877 334322 22345677899999999974
No 239
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=97.82 E-value=0.00024 Score=66.30 Aligned_cols=112 Identities=22% Similarity=0.245 Sum_probs=76.9
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc----cCCHHHH----hhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV----GGSPAEV----IKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~----~~s~~~~----~~~advvi~~~p~~~~~~~v 73 (226)
+|-|+|+|.+|+.+++.|.++|+++++.|.|+++++.+++.|..+ .++++-+ ++++|.+++++++++....+
T Consensus 402 ~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i 481 (621)
T PRK03562 402 RVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQL 481 (621)
T ss_pred cEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHH
Confidence 578999999999999999999999999999999999998887644 1222211 24689999999887766555
Q ss_pred hhcccccccccCCC-cEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 74 VFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 74 ~~~~~~l~~~l~~g-~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
. ..... +.|+ .+++-. .++. -.+.+.+.|+.++.-+...+
T Consensus 482 ~---~~ar~-~~p~~~iiaRa--~d~~----~~~~L~~~Gad~v~~e~~e~ 522 (621)
T PRK03562 482 V---ELVKE-HFPHLQIIARA--RDVD----HYIRLRQAGVEKPERETFEG 522 (621)
T ss_pred H---HHHHH-hCCCCeEEEEE--CCHH----HHHHHHHCCCCEEehhhHhH
Confidence 4 22222 2233 344322 2333 24455677888776555543
No 240
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.81 E-value=4.7e-05 Score=65.43 Aligned_cols=125 Identities=14% Similarity=0.138 Sum_probs=76.5
Q ss_pred CeEEEEecChhHHHHHHHHHhC------C--Ce-EEEEcCCchhH-------HHH---HHCC-C--cccC--CHHHHh-h
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN------G--FK-VTVWNRTLSKC-------DEL---VAHG-A--TVGG--SPAEVI-K 55 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~------G--~~-V~~~dr~~~~~-------~~l---~~~g-~--~~~~--s~~~~~-~ 55 (226)
|||++||+|++|+.+++.|.++ | .+ |.++|++.... +.+ .+.| . .... ++.++. .
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~ 80 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEI 80 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcC
Confidence 7999999999999999999873 3 44 34557654221 111 2212 1 1112 455553 3
Q ss_pred hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH-HHHHHHHHHHHhcCCc-EEecCCCCChHhhc
Q 027255 56 KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH-ETSIKISRAITSKGGH-FLEAPVSGSKQPAE 128 (226)
Q Consensus 56 ~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~-~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~ 128 (226)
++|+|+-|+|+...-...+ .-+.+.++.|..||-.+.... ....++.+.++++|+. +.++.|.|+-|-..
T Consensus 81 ~~DVvVE~t~~~~~g~~~~---~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~eatV~~g~Pii~ 152 (326)
T PRK06392 81 KPDVIVDVTPASKDGIREK---NLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEATVAGGVPLFS 152 (326)
T ss_pred CCCEEEECCCCCCcCchHH---HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEeeeeeeccchhh
Confidence 6899999998532100011 112456778999998886422 3456677777778876 46787887765443
No 241
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=97.81 E-value=5.6e-05 Score=64.57 Aligned_cols=194 Identities=19% Similarity=0.195 Sum_probs=111.9
Q ss_pred CeEEEEecChhHHHHHHHHHhC--------CCeEE---EEcCCchhHHHHHHCC-CcccCCH-----HHHhh--hCCeEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCDELVAHG-ATVGGSP-----AEVIK--KCTITI 61 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--------G~~V~---~~dr~~~~~~~l~~~g-~~~~~s~-----~~~~~--~advvi 61 (226)
++|+++|+|.+|+.+++.|.++ |.++. +.+|+......+.-.+ ..+..+. .+.+. +.|+|+
T Consensus 4 v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvv 83 (333)
T COG0460 4 VKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLNAEVWTTDGALSLGDEVLLDEDIDVVV 83 (333)
T ss_pred EEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccchhhheecccccccHhhhccccCCEEE
Confidence 4799999999999999999875 33433 3466655543111112 2233333 44443 457888
Q ss_pred EecCC-HHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCc-EEecCCCCChHhhccCcEEEEecc
Q 027255 62 GMLAD-PAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGH-FLEAPVSGSKQPAETGQLVILSAG 138 (226)
Q Consensus 62 ~~~p~-~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~-~ld~pv~g~~~~a~~g~~~~~~gg 138 (226)
-+++. ....+. + +.+...++.|+.||-..... -..-.++.+.+++.|+. +.++.|.|+-|-...=+- .+. |
T Consensus 84 e~~~~d~~~~~~-~---~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l~yEAtV~gGiPiI~~lr~-~l~-g 157 (333)
T COG0460 84 ELVGGDVEPAEP-A---DLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKLLYEATVGGGIPIIKLLRE-LLA-G 157 (333)
T ss_pred ecCcccCCchhh-H---HHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeEEEEeeeccCcchHHHHHh-hcc-c
Confidence 88776 333332 2 33457788899998766532 22345778888888865 678888888654322111 011 2
Q ss_pred CCCCCCCcchhhcccccccccCcccCCccchHHH---HHHHHHHHHHhhcCC-------CchHHHHHHHHHHHHHHcCCC
Q 027255 139 EKDLGGIANPMFKGKGPTMLQSNYAPAFPLKHQQ---KDMRLALALGDENAV-------SMPIAAAANEAFKKARSLGLG 208 (226)
Q Consensus 139 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~---kd~~~~~~~a~~~g~-------~~p~~~~~~~~~~~a~~~g~g 208 (226)
++ +.+. ..+++|.-. |=+..|. .+.+.+++.|+++|+ ++.-.++++++.-.+...+..
T Consensus 158 ~~--------I~~i--~GIlNGT~N--yIlt~m~~~~~~f~dal~eAq~lGyAE~DPt~DleG~DaA~Kl~ILa~~~~g~ 225 (333)
T COG0460 158 DE--------ILSI--RGILNGTTN--YILTRMEEGGLSFEDALAEAQELGYAEADPTDDLEGIDAARKLVILARLAFGT 225 (333)
T ss_pred Cc--------eEEE--EEEEeccHH--HHHHHHHccCCCHHHHHHHHHHcCCCCCCCCCCccchHHHHHHHHHHHHHcCC
Confidence 21 1111 112333222 2122221 256778888888887 456778888888888866554
Q ss_pred CCCh
Q 027255 209 DNDF 212 (226)
Q Consensus 209 ~~d~ 212 (226)
....
T Consensus 226 ~~~~ 229 (333)
T COG0460 226 PETL 229 (333)
T ss_pred CCCh
Confidence 4433
No 242
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=97.79 E-value=0.00011 Score=56.60 Aligned_cols=75 Identities=25% Similarity=0.382 Sum_probs=53.0
Q ss_pred CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||-+ ..|.+++..|.++|..|++++... .++.+.++++|+||+++..+..++.
T Consensus 37 k~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T--------------~~l~~~~~~ADIVVsa~G~~~~i~~------- 95 (160)
T PF02882_consen 37 KKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT--------------KNLQEITRRADIVVSAVGKPNLIKA------- 95 (160)
T ss_dssp -EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS--------------SSHHHHHTTSSEEEE-SSSTT-B-G-------
T ss_pred CEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC--------------CcccceeeeccEEeeeecccccccc-------
Confidence 478999997 599999999999999999998764 3566778899999999987654321
Q ss_pred cccccCCCcEEEecCCCCH
Q 027255 80 VLEQICPGKGYIDMSTVDH 98 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~ 98 (226)
+.+++|.++||+++...
T Consensus 96 --~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 96 --DWIKPGAVVIDVGINYV 112 (160)
T ss_dssp --GGS-TTEEEEE--CEEE
T ss_pred --ccccCCcEEEecCCccc
Confidence 34689999999987544
No 243
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.79 E-value=0.00012 Score=61.41 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=60.5
Q ss_pred CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||-+. .|.+++..|.+.|..|+++++. +.++.+.++++|+||.++..+..+..
T Consensus 160 k~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~------- 218 (285)
T PRK10792 160 LNAVVVGASNIVGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG------- 218 (285)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH-------
Confidence 3689999998 9999999999999999999864 23678889999999999977553322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.++..
T Consensus 219 --~~vk~gavVIDvGin~ 234 (285)
T PRK10792 219 --EWIKPGAIVIDVGINR 234 (285)
T ss_pred --HHcCCCcEEEEccccc
Confidence 4567999999998543
No 244
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.78 E-value=8.6e-05 Score=62.48 Aligned_cols=81 Identities=19% Similarity=0.220 Sum_probs=62.2
Q ss_pred hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--------------cCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 10 IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--------------GGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 10 ~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--------------~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
.||..+|..|.++||+|++|+|+ ++.+.+.+.|... ..++++ ....|+||+|++. .++++++
T Consensus 1 aiG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs-~~~~~~l- 76 (293)
T TIGR00745 1 AVGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKA-YQTEEAA- 76 (293)
T ss_pred CchHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccc-hhHHHHH-
Confidence 47999999999999999999997 6677777665321 223344 4678999999987 4678887
Q ss_pred cccccccccCCCcEEEecCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~ 96 (226)
+.+.+.+.++++||.+...
T Consensus 77 --~~l~~~l~~~~~iv~~qNG 95 (293)
T TIGR00745 77 --ALLLPLIGKNTKVLFLQNG 95 (293)
T ss_pred --HHhHhhcCCCCEEEEccCC
Confidence 7788888888888876654
No 245
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=97.78 E-value=6.6e-05 Score=65.90 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=59.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCC-------CcccCCHH-HHhhhCCeEEEecCCHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATVGGSPA-EVIKKCTITIGMLADPAAA 70 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~-~~~~~advvi~~~p~~~~~ 70 (226)
|||+|+|+ |..|..+.+.|.++ .++|+.+.++.++-+.+.... .....+.+ +.++++|+||+++|+. ..
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s 117 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TT 117 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HH
Confidence 58999998 99999999999988 678888776544433322211 11112222 2247899999999884 45
Q ss_pred HHHhhcccccccccCCCcEEEecCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
.+++ +.+..|..|||+|+.
T Consensus 118 ~~i~-------~~~~~g~~VIDlSs~ 136 (381)
T PLN02968 118 QEII-------KALPKDLKIVDLSAD 136 (381)
T ss_pred HHHH-------HHHhCCCEEEEcCch
Confidence 5554 223468899999964
No 246
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.77 E-value=0.00014 Score=61.51 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=72.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc---hhHHHHHHC-C----Cc-ccCCH------HHHhhhCCeEEEecC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL---SKCDELVAH-G----AT-VGGSP------AEVIKKCTITIGMLA 65 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~---~~~~~l~~~-g----~~-~~~s~------~~~~~~advvi~~~p 65 (226)
++.|||+|..+++++..|+..|. +|+++||++ ++++.+.+. + .. ...++ .+...++|+||.++|
T Consensus 126 ~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aDivINaTp 205 (288)
T PRK12749 126 TMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTK 205 (288)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCCEEEECCC
Confidence 68899999999999999999885 799999995 477777553 1 11 11222 234557899999998
Q ss_pred CHHH--HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 66 DPAA--ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 66 ~~~~--~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
-.-. ..... .--...++++.+++|+--. |..+ .+.+.++++|+..+|+
T Consensus 206 ~Gm~~~~~~~~---~~~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~G 255 (288)
T PRK12749 206 VGMKPLENESL---VNDISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTIDG 255 (288)
T ss_pred CCCCCCCCCCC---CCcHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEECC
Confidence 5321 00101 0001235678889998643 3332 4566677888887665
No 247
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.76 E-value=0.00012 Score=63.31 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=74.0
Q ss_pred CeEEEEecChhHHHHHHHHHh--------CCC--eEE-EEcCCch----------hHHHHHHCCC---cc-------cCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLR--------NGF--KVT-VWNRTLS----------KCDELVAHGA---TV-------GGS 49 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~--------~G~--~V~-~~dr~~~----------~~~~l~~~g~---~~-------~~s 49 (226)
++|+++|+|++|+.+++.|.+ .|. +|. +.|++.. ++.+..+.+. .. ..+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 479999999999999999877 464 333 4464422 1111121111 01 115
Q ss_pred HHHHh--hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcEE-ecCCCCChH
Q 027255 50 PAEVI--KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFL-EAPVSGSKQ 125 (226)
Q Consensus 50 ~~~~~--~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~l-d~pv~g~~~ 125 (226)
+.+++ ..+|+|+-+++. ....+.+ ...+..|..||-.++.. ....+++.+..++++..++ ++.+.++.|
T Consensus 83 ~~ell~~~~~DVvVd~t~~-~~a~~~~------~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP 155 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTND-KNAHEWH------LEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP 155 (336)
T ss_pred HHHHHhcCCCCEEEECCCc-HHHHHHH------HHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence 66776 368999999865 4444544 25567888888877741 1244466666667787754 555776765
Q ss_pred hhc
Q 027255 126 PAE 128 (226)
Q Consensus 126 ~a~ 128 (226)
-..
T Consensus 156 ii~ 158 (336)
T PRK08374 156 IIG 158 (336)
T ss_pred chH
Confidence 443
No 248
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.75 E-value=0.00027 Score=54.45 Aligned_cols=107 Identities=20% Similarity=0.123 Sum_probs=68.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-CcccC-CH-HHHhhhCCeEEEecCCHHHHHHHhhc-
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-ATVGG-SP-AEVIKKCTITIGMLADPAAALSVVFD- 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-~~~~~-s~-~~~~~~advvi~~~p~~~~~~~v~~~- 76 (226)
.+|.|||.|.+|...++.|.+.|++|++++ ++..+++.+.+ +.+.. .+ .+-++++|+||.++.+++ +...+..
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~~i~~~ 90 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQHA-VNMMVKQA 90 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCHH-HHHHHHHH
Confidence 378999999999999999999999999996 44445554432 22211 11 123567899999987644 3322210
Q ss_pred -c-cc--------------cccccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255 77 -K-GG--------------VLEQICPGKGYIDMST--VDHETSIKISRAITS 110 (226)
Q Consensus 77 -~-~~--------------l~~~l~~g~ivvd~st--~~~~~~~~l~~~~~~ 110 (226)
. .. .-.....+.+.|-.|| .+|..++.+.+.+.+
T Consensus 91 a~~~~~vn~~d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 91 AHDFQWVNVVSDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred HHHCCcEEECCCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 0 00 0111334566666666 489888888887765
No 249
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=97.74 E-value=5.9e-05 Score=54.14 Aligned_cols=83 Identities=12% Similarity=0.064 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhCCCeEEEEcCCchhHHHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCC
Q 027255 11 MGKAISMNLLRNGFKVTVWNRTLSKCDELV---AHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPG 87 (226)
Q Consensus 11 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g 87 (226)
-+..|++.|.+.|.+|.+||+.-....... ..+++.++++.++++++|+|+++++.++ .+.+- .+++...+.++
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~-f~~l~--~~~~~~~~~~~ 94 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDE-FRELD--WEEIAKLMRKP 94 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GG-GGCCG--HHHHHHHSCSS
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHH-HhccC--HHHHHHhcCCC
Confidence 456789999999999999998776654444 2578888999999999999999998754 33321 13455666788
Q ss_pred cEEEecCCC
Q 027255 88 KGYIDMSTV 96 (226)
Q Consensus 88 ~ivvd~st~ 96 (226)
.+|+|+-.+
T Consensus 95 ~~iiD~~~~ 103 (106)
T PF03720_consen 95 PVIIDGRNI 103 (106)
T ss_dssp EEEEESSST
T ss_pred CEEEECccc
Confidence 999998653
No 250
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=97.74 E-value=0.0001 Score=55.17 Aligned_cols=114 Identities=18% Similarity=0.269 Sum_probs=69.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhhh--CCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIKK--CTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~--advvi~~~p~~~~ 69 (226)
.||.|+|+|.+|+.+|++|++.|. +++++|.+.=....+..+ |...+....+.+.+ .++=+.+.+..-.
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~~~ 82 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEKID 82 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESHCS
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecccc
Confidence 479999999999999999999997 699998765443333322 22222223333332 3444555544221
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
.+.+ ..+. ..-.+||+++.. +.....+.+.+.+++..|+++-+.|
T Consensus 83 -~~~~---~~~~---~~~d~vi~~~d~-~~~~~~l~~~~~~~~~p~i~~~~~g 127 (135)
T PF00899_consen 83 -EENI---EELL---KDYDIVIDCVDS-LAARLLLNEICREYGIPFIDAGVNG 127 (135)
T ss_dssp -HHHH---HHHH---HTSSEEEEESSS-HHHHHHHHHHHHHTT-EEEEEEEET
T ss_pred -cccc---cccc---cCCCEEEEecCC-HHHHHHHHHHHHHcCCCEEEEEeec
Confidence 1111 1122 234577777554 6677788899999999999887664
No 251
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=97.74 E-value=0.00011 Score=58.82 Aligned_cols=32 Identities=31% Similarity=0.547 Sum_probs=30.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRT 32 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~ 32 (226)
.+|+|+|+|.||+.+|.+|++.|+ +++++|++
T Consensus 22 ~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 22 ATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 379999999999999999999998 69999998
No 252
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=97.73 E-value=0.00014 Score=61.01 Aligned_cols=111 Identities=18% Similarity=0.135 Sum_probs=73.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-CCcccCCHHHHhhhCCeEEEecCCHHHH-HHHhhccc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-GATVGGSPAEVIKKCTITIGMLADPAAA-LSVVFDKG 78 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~~~advvi~~~p~~~~~-~~v~~~~~ 78 (226)
++.|+|+|..+++++..|.+.|. +|+++||++++.+.+.+. +......+ ....+|+||-|+|-.-.- .+.- +.
T Consensus 124 ~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm~~~~~~~--~~ 199 (272)
T PRK12550 124 VVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGMAGGPEAD--KL 199 (272)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCccccCCCCccc--cC
Confidence 58899999999999999999996 599999999999988764 22211111 124589999999853210 0000 00
Q ss_pred cc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 79 GV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 79 ~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.+ ...+.++.+++|+.-... . -.+.+.++++|+..+++
T Consensus 200 pi~~~~l~~~~~v~D~vY~P~-~-T~ll~~A~~~G~~~i~G 238 (272)
T PRK12550 200 AFPEAEIDAASVVFDVVALPA-E-TPLIRYARARGKTVITG 238 (272)
T ss_pred CCCHHHcCCCCEEEEeecCCc-c-CHHHHHHHHCcCeEeCC
Confidence 01 133667889999865432 2 23556667788877665
No 253
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=97.72 E-value=0.00032 Score=56.22 Aligned_cols=113 Identities=18% Similarity=0.227 Sum_probs=69.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|.+|+.+|++|+..|. +++++|.+.=....+..+ |...+....+.++ +.++-+...+..- .
T Consensus 23 ~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i-~ 101 (202)
T TIGR02356 23 HVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERV-T 101 (202)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcC-C
Confidence 69999999999999999999997 799999875433333322 2222222222222 2344444443211 0
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
.+.+ .+.+..-.+||+++. ++.....+.+.+.+.++.++++-+.|
T Consensus 102 ~~~~------~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 102 AENL------ELLINNVDLVLDCTD-NFATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred HHHH------HHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 1111 122334467888754 46667778888899999999987665
No 254
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.72 E-value=0.00011 Score=61.93 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=57.4
Q ss_pred CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||.|. .|++++..|...|..|++++|.. .++.+.++++|+||.+++.+.. + .
T Consensus 160 k~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~~----v---~- 217 (283)
T PRK14192 160 KHAVVVGRSAILGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPEL----I---K- 217 (283)
T ss_pred CEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCCc----C---C-
Confidence 3789999998 99999999999999999999832 2455666899999999975441 2 1
Q ss_pred cccccCCCcEEEecCCC
Q 027255 80 VLEQICPGKGYIDMSTV 96 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~ 96 (226)
.+.+++|.+++|....
T Consensus 218 -~~~lk~gavViDvg~n 233 (283)
T PRK14192 218 -KDWIKQGAVVVDAGFH 233 (283)
T ss_pred -HHHcCCCCEEEEEEEe
Confidence 1447799999998754
No 255
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=97.72 E-value=0.00028 Score=61.06 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=69.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCC----------cccCCHHHHhh--hCCeEEEecCCHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA----------TVGGSPAEVIK--KCTITIGMLADPA 68 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~----------~~~~s~~~~~~--~advvi~~~p~~~ 68 (226)
+|.|||+|.+|+.+|.+|++.|. +++++|.+.-....+..+-. ..+....+.++ +.++-+......-
T Consensus 26 ~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~ 105 (339)
T PRK07688 26 HVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDV 105 (339)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccC
Confidence 79999999999999999999998 89999987644444433311 11111222222 2444444432211
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
...+ + .+.+..-.+|||++. .+.....+.+.+.+.++.++.+.+.|
T Consensus 106 ~~~~-~------~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 106 TAEE-L------EELVTGVDLIIDATD-NFETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred CHHH-H------HHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeeee
Confidence 1111 1 122334568888765 45666678888888888888876554
No 256
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=97.72 E-value=0.00024 Score=58.07 Aligned_cols=86 Identities=20% Similarity=0.253 Sum_probs=66.5
Q ss_pred EEEEcCCchhHHHHHHC-CCcccCCHHHHh-hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCC---CHHH
Q 027255 26 VTVWNRTLSKCDELVAH-GATVGGSPAEVI-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTV---DHET 100 (226)
Q Consensus 26 V~~~dr~~~~~~~l~~~-g~~~~~s~~~~~-~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~---~~~~ 100 (226)
+.+||+++++.+.+.+. |+..+.+.++++ .+.|+|++|+|+..+.+... ..++.|+.++-.+.. +.+.
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~~H~e~a~-------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQEAVKEYAE-------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChHHHHHHHH-------HHHHCCCCEEEECCcccCCHHH
Confidence 56899999999888764 788889999986 57999999999976655544 556677666656664 6688
Q ss_pred HHHHHHHHHhcCCcEEec
Q 027255 101 SIKISRAITSKGGHFLEA 118 (226)
Q Consensus 101 ~~~l~~~~~~~g~~~ld~ 118 (226)
.+++.+.+++.|..+.=.
T Consensus 78 ~~~l~~aA~~~g~~l~i~ 95 (229)
T TIGR03855 78 RERLREVARSSGRKVYIP 95 (229)
T ss_pred HHHHHHHHHhcCCEEEEC
Confidence 999999999988765433
No 257
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=97.71 E-value=0.00029 Score=63.22 Aligned_cols=107 Identities=19% Similarity=0.198 Sum_probs=76.2
Q ss_pred eEEEEec----ChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 2 EVGFLGL----GIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG~----G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
+|+|||. |.+|..+.++|.+.|| +|+.+|+..+. -.|.....+++++-+..|++++++|. +.+.+++
T Consensus 9 siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l- 81 (447)
T TIGR02717 9 SVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVV- 81 (447)
T ss_pred EEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCH-HHHHHHH-
Confidence 6999999 8899999999999998 57666665432 24788899999998889999999987 5666666
Q ss_pred cccccccccCCCcEEEecCCCC------HHHHHHHHHHHHhcCCcEEec
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD------HETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~------~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+++.+. .-..++|-.+-.. ....+++.+.+++.|++++.-
T Consensus 82 --~e~~~~-gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlGP 127 (447)
T TIGR02717 82 --EECGEK-GVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLGP 127 (447)
T ss_pred --HHHHhc-CCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEec
Confidence 444332 2234444332211 233567888888888887654
No 258
>CHL00194 ycf39 Ycf39; Provisional
Probab=97.70 E-value=0.00011 Score=62.86 Aligned_cols=65 Identities=26% Similarity=0.361 Sum_probs=51.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p 65 (226)
|||.|+|. |.+|+.+++.|.++||+|++..|++++...+...++++ ..++.++++++|+||.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 89999995 99999999999999999999999987765555445433 2245567788999998754
No 259
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=97.70 E-value=0.00016 Score=61.46 Aligned_cols=63 Identities=17% Similarity=0.292 Sum_probs=48.8
Q ss_pred EEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHHHHHC---------CCcc--cCCHHHHhhhCCeEEEecCC
Q 027255 3 VGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDELVAH---------GATV--GGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~l~~~---------g~~~--~~s~~~~~~~advvi~~~p~ 66 (226)
|+|||+|.+|..+|..|+..| +++.++|+++++++..... ..+. ..+ .+.+++||+||++...
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~ 76 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGA 76 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCC
Confidence 689999999999999999988 6899999999876654331 0122 233 4678899999999864
No 260
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=97.67 E-value=0.00034 Score=54.74 Aligned_cols=112 Identities=14% Similarity=0.148 Sum_probs=64.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCCHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~~~~~~ 71 (226)
||.|||+|.+|+.++++|++.|. +++++|.+.=....+.++ |...+....+.++ +.++=+.+.+..-.-+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~ 80 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN 80 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence 68999999999999999999998 599999876222222221 2111111122221 2344443332211001
Q ss_pred HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc-CCcEEecCCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK-GGHFLEAPVS 121 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~-g~~~ld~pv~ 121 (226)
. +.+.++.-.+||++ +-.+.....+.+.+.++ ++.++.+-+.
T Consensus 81 ~-------~~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~~~ip~i~~~~~ 123 (174)
T cd01487 81 N-------LEGLFGDCDIVVEA-FDNAETKAMLAESLLGNKNKPVVCASGM 123 (174)
T ss_pred h-------HHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEEehh
Confidence 1 11223344688888 44566666677777776 8888776443
No 261
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.66 E-value=0.00011 Score=63.44 Aligned_cols=89 Identities=19% Similarity=0.191 Sum_probs=57.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeE---EEEcCCchhHHHHHHCC--CcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHG--ATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~~~~~~advvi~~~p~~~~~~~v~ 74 (226)
|||+|||. |..|..+.+.|.+++|++ ....+..+.-+.+.-.+ +...+...+.++++|+||.|+|.. ..+++.
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~ 80 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYA 80 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHH
Confidence 68999997 999999999999988863 55544433333332122 222222223447899999999885 444444
Q ss_pred hcccccccccCCCcEEEecCCC
Q 027255 75 FDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivvd~st~ 96 (226)
. ..+..|.+|||.|+.
T Consensus 81 ---~---~~~~~G~~VIDlS~~ 96 (334)
T PRK14874 81 ---P---KAAAAGAVVIDNSSA 96 (334)
T ss_pred ---H---HHHhCCCEEEECCch
Confidence 2 233568899999863
No 262
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=97.66 E-value=0.00012 Score=63.36 Aligned_cols=88 Identities=16% Similarity=0.166 Sum_probs=55.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCe---EEEE--cCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~---V~~~--dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~ 74 (226)
+||+|||. |..|..+.+.|.+.+|+ +... .|+..+.-........+.....+.++++|+||+|+|+.. ..++.
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~~-s~~~~ 86 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGSI-SKKFG 86 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcHH-HHHHH
Confidence 58999997 99999999999998874 3222 344333222211112222222245578999999999954 44444
Q ss_pred hcccccccccCCCcEEEecCC
Q 027255 75 FDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 75 ~~~~~l~~~l~~g~ivvd~st 95 (226)
. .....|..|||.|.
T Consensus 87 ---~---~~~~~g~~VIDlS~ 101 (344)
T PLN02383 87 ---P---IAVDKGAVVVDNSS 101 (344)
T ss_pred ---H---HHHhCCCEEEECCc
Confidence 2 22347889999995
No 263
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.64 E-value=0.00088 Score=53.86 Aligned_cols=110 Identities=16% Similarity=0.148 Sum_probs=72.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC--CHHHHhhhCCeEEEecCCHHHHHHHhh-
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG--SPAEVIKKCTITIGMLADPAAALSVVF- 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~--s~~~~~~~advvi~~~p~~~~~~~v~~- 75 (226)
.+|.|||.|.+|..-++.|++.|.+|++++.+.. ..+.+.+.| +.... -..+.++++++||.++.+++.-..+..
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~~ 89 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAHA 89 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence 3789999999999999999999999999987764 445555553 33211 113456789999998866532222221
Q ss_pred -----------ccccc----c-cccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255 76 -----------DKGGV----L-EQICPGKGYIDMST--VDHETSIKISRAITS 110 (226)
Q Consensus 76 -----------~~~~l----~-~~l~~g~ivvd~st--~~~~~~~~l~~~~~~ 110 (226)
++.+. . .....|.+.|-.|| .+|..++.+.+.+.+
T Consensus 90 a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 90 ARARGVPVNVVDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred HHHcCCEEEECCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 00011 1 12345667766666 489999888888865
No 264
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=97.64 E-value=0.00077 Score=60.12 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=80.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh----HHHHHHCCCcccC--CHHHHhhhCCeEEEec---CCHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK----CDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAAL 71 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~ 71 (226)
|||.|+|+|.-|.++++.|.+.|++|+++|.++.. ...+...++.+.. ...+...++|+|+..- |+...++
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~ 87 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVE 87 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHH
Confidence 68999999999999999999999999999966655 2233345554422 1225667889888752 2333444
Q ss_pred HHh-hc-----cccccccc-CCCcEE-EecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255 72 SVV-FD-----KGGVLEQI-CPGKGY-IDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQ 125 (226)
Q Consensus 72 ~v~-~~-----~~~l~~~l-~~g~iv-vd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~ 125 (226)
... .| +-++.-.. .+..+| |.-|+....++.-++..+++.|....-+.-.|.|.
T Consensus 88 ~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 88 AAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred HHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence 432 11 11222222 123344 44455677888888999999898776666666654
No 265
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.62 E-value=0.00016 Score=61.93 Aligned_cols=63 Identities=14% Similarity=0.197 Sum_probs=47.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC-------CCcccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-------GATVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~-------g~~~~~s~~~~~~~advvi~~~ 64 (226)
+||+|||+|.+|..+|..|+..|. ++.++|+++++++... .. .+..+.++++ +++||+||++.
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvita 79 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTA 79 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECC
Confidence 589999999999999999998874 7999999887654322 11 1222345555 78999999965
No 266
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.61 E-value=0.00022 Score=59.87 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=58.9
Q ss_pred CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||-| ..|.++|..|.++|..|++++... .++.+.+++||+|++++..+..+..
T Consensus 158 k~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t--------------~~l~~~~~~ADIvV~AvG~p~~i~~------- 216 (285)
T PRK14191 158 KDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT--------------KDLSFYTQNADIVCVGVGKPDLIKA------- 216 (285)
T ss_pred CEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc--------------HHHHHHHHhCCEEEEecCCCCcCCH-------
Confidence 478999999 999999999999999999986432 2346788999999999987653321
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.++||.+...
T Consensus 217 --~~vk~GavVIDvGi~~ 232 (285)
T PRK14191 217 --SMVKKGAVVVDIGINR 232 (285)
T ss_pred --HHcCCCcEEEEeeccc
Confidence 3457999999988643
No 267
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=97.61 E-value=0.00068 Score=60.71 Aligned_cols=68 Identities=21% Similarity=0.307 Sum_probs=53.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--CCcc-c---CCHHHH----hhhCCeEEEecCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV-G---GSPAEV----IKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--g~~~-~---~s~~~~----~~~advvi~~~p~~~ 68 (226)
++|.|+|+|.+|..+++.|.+.|++|+++|+++++.+.+.+. +... . .+.+.+ ++++|.|+++++++.
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~ 309 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDE 309 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcH
Confidence 468999999999999999999999999999999999888775 3322 1 222222 357899999888753
No 268
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=97.61 E-value=0.00046 Score=52.08 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=31.0
Q ss_pred CHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCC
Q 027255 49 SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 49 s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~ 97 (226)
++++.+++||+|+++++.+.. + + .+.+++|.+++|.+...
T Consensus 64 ~l~~~v~~ADIVvsAtg~~~~----i---~--~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 64 QLQSKVHDADVVVVGSPKPEK----V---P--TEWIKPGATVINCSPTK 103 (140)
T ss_pred CHHHHHhhCCEEEEecCCCCc----c---C--HHHcCCCCEEEEcCCCc
Confidence 678899999999999987532 2 1 24578999999988755
No 269
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.60 E-value=0.00015 Score=64.52 Aligned_cols=114 Identities=16% Similarity=0.111 Sum_probs=67.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCH---HHHHHHhh-c
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADP---AAALSVVF-D 76 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~---~~~~~v~~-~ 76 (226)
.+|.|||+|.+|.++|+.|.+.|++|+++|+++..........-..........+++|+||.+.+.+ ..+++... |
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~g 83 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIASH 83 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHCC
Confidence 3799999999999999999999999999998876433211000011223444456789888876432 23333321 1
Q ss_pred -----cccc-ccc--cCCCcEE-EecCCCCHHHHHHHHHHHHhcCCc
Q 027255 77 -----KGGV-LEQ--ICPGKGY-IDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 77 -----~~~l-~~~--l~~g~iv-vd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
+..+ ... ..+..+| |--|.....++.-+++.+...|..
T Consensus 84 ~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g~~ 130 (418)
T PRK00683 84 IPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLGIP 130 (418)
T ss_pred CcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcCCC
Confidence 0011 111 1122344 444446777777788888877654
No 270
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.59 E-value=0.0018 Score=58.33 Aligned_cols=115 Identities=16% Similarity=0.195 Sum_probs=71.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-----hHHHHHHCCCcccC--CHHHHhhhCCeEEEec---CCHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAA 70 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~ 70 (226)
++|+|+|+|.-|.++|+.|.+.|++|+++|+++. ..+++.+.|+.... ...+.+.++|+||..- |+.+.+
T Consensus 15 ~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spgi~~~~p~~ 94 (458)
T PRK01710 15 KKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPSMRIDSPEL 94 (458)
T ss_pred CeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCCCCCCchHH
Confidence 3799999999999999999999999999998753 22456667876532 2234457899888763 122333
Q ss_pred HHHhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 71 LSVVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 71 ~~v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
..... + +-+++....+.++|--+.| ....+..-++..+...|...
T Consensus 95 ~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~~g~~~ 146 (458)
T PRK01710 95 VKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKEEGYKT 146 (458)
T ss_pred HHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHhCCCCE
Confidence 32221 1 0011111223345555555 56666777777777777654
No 271
>PRK15076 alpha-galactosidase; Provisional
Probab=97.58 E-value=0.0001 Score=65.70 Aligned_cols=66 Identities=14% Similarity=0.205 Sum_probs=48.7
Q ss_pred CeEEEEecChhHHHHHH--HHH----hCCCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIMGKAISM--NLL----RNGFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~--~l~----~~G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~ 62 (226)
|||+|||.|.||...+. .++ -.+.+|.++|+++++.+.... .+ +..+++..+++++||+||+
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~ 81 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN 81 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence 68999999999966554 443 245789999999988763211 12 3346677899999999999
Q ss_pred ecCC
Q 027255 63 MLAD 66 (226)
Q Consensus 63 ~~p~ 66 (226)
+.-.
T Consensus 82 ti~v 85 (431)
T PRK15076 82 AIQV 85 (431)
T ss_pred eeee
Confidence 8754
No 272
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=97.58 E-value=0.00048 Score=59.60 Aligned_cols=114 Identities=17% Similarity=0.207 Sum_probs=65.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhh--hCCeEEEecCCH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADP 67 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~--~advvi~~~p~~ 67 (226)
.+|.|||+|.+|+.+|.+|++.|+ +++++|++.-....+..+ |...+....+.++ +.++-+...+..
T Consensus 25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~~~~ 104 (338)
T PRK12475 25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPVVTD 104 (338)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEEecc
Confidence 379999999999999999999998 799999875322222221 1111111112221 245544444321
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
.. .+.+ +. .+..-.+|||++. .+.....+.+.+.+.++.++.+.+.|
T Consensus 105 ~~-~~~~---~~---~~~~~DlVid~~D-~~~~r~~in~~~~~~~ip~i~~~~~g 151 (338)
T PRK12475 105 VT-VEEL---EE---LVKEVDLIIDATD-NFDTRLLINDLSQKYNIPWIYGGCVG 151 (338)
T ss_pred CC-HHHH---HH---HhcCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1111 11 1223467777764 45555667777777788777775554
No 273
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.58 E-value=0.00031 Score=59.00 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=58.7
Q ss_pred CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
+++.|||-+. .|.++|..|.+.|..|++++... .++.+.++++|+||.++..+..+..
T Consensus 165 k~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvv~AvG~p~~i~~------- 223 (287)
T PRK14176 165 KNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT--------------DDLKKYTLDADILVVATGVKHLIKA------- 223 (287)
T ss_pred CEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC--------------CCHHHHHhhCCEEEEccCCccccCH-------
Confidence 4789999998 99999999999999999998432 3567788999999998876543211
Q ss_pred cccccCCCcEEEecCCC
Q 027255 80 VLEQICPGKGYIDMSTV 96 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~ 96 (226)
..+++|.+|||.++.
T Consensus 224 --~~vk~gavVIDvGin 238 (287)
T PRK14176 224 --DMVKEGAVIFDVGIT 238 (287)
T ss_pred --HHcCCCcEEEEeccc
Confidence 356799999998875
No 274
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.58 E-value=0.00037 Score=59.85 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=36.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT 45 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~ 45 (226)
+|+|+|+|..|..-.+.....|.+|++++|++++.+.+.+.|+.
T Consensus 169 ~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd 212 (339)
T COG1064 169 WVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD 212 (339)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc
Confidence 69999999999855555555899999999999999888877653
No 275
>PRK08328 hypothetical protein; Provisional
Probab=97.58 E-value=0.00079 Score=55.14 Aligned_cols=114 Identities=15% Similarity=0.160 Sum_probs=72.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcc---c-C-CHHHHh----h--hCCeEEEecCCHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATV---G-G-SPAEVI----K--KCTITIGMLADPAA 69 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~---~-~-s~~~~~----~--~advvi~~~p~~~~ 69 (226)
+|.|||+|..|+.++.+|++.|. +++++|.+.-....+..+-... . . .-.+++ + +.++.+.+.+.. .
T Consensus 29 ~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~~~-~ 107 (231)
T PRK08328 29 KVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFVGR-L 107 (231)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEEecc-C
Confidence 69999999999999999999996 6889988766555554431100 0 0 111121 1 467776665431 1
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
.++-+ .+.++.-.+|||+.-. +..-..+.+.+.+.++.++.+.+.|.
T Consensus 108 ~~~~~------~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~~~ip~i~g~~~g~ 154 (231)
T PRK08328 108 SEENI------DEVLKGVDVIVDCLDN-FETRYLLDDYAHKKGIPLVHGAVEGT 154 (231)
T ss_pred CHHHH------HHHHhcCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 11111 1223345788888765 55666777788888999998877653
No 276
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.58 E-value=0.00049 Score=61.95 Aligned_cols=117 Identities=15% Similarity=0.054 Sum_probs=72.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEec--CCH-----HHHHHHh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGML--ADP-----AAALSVV 74 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~--p~~-----~~~~~v~ 74 (226)
+|.|||+|..|.+.|+.|.+.|++|.++|+.+.....+...|+.......+-+.++|+||..- |.. ..+....
T Consensus 11 ~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~v~~a~ 90 (460)
T PRK01390 11 TVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWVVDLAR 90 (460)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHHHHHHH
Confidence 699999999999999999999999999998765555566667765432223356789887532 211 1333322
Q ss_pred hc------cccccccc-----CCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEec
Q 027255 75 FD------KGGVLEQI-----CPGKGYIDMST-VDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 75 ~~------~~~l~~~l-----~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.. ..++.... .+..+|--+.| ....++.-++..+...|..+.-+
T Consensus 91 ~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~~g~~~~~~ 146 (460)
T PRK01390 91 AAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILREAGRDVQMG 146 (460)
T ss_pred HcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCCeEEc
Confidence 11 00111111 12345544544 56667777777887777655433
No 277
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.56 E-value=0.0013 Score=59.75 Aligned_cols=124 Identities=15% Similarity=0.135 Sum_probs=76.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccC--CHHHHhhhCCeEEEec--CC-HHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGG--SPAEVIKKCTITIGML--AD-PAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~~~~~~advvi~~~--p~-~~~~~~v~~ 75 (226)
.+|.|+|+|..|.+.++.|...|++|+++|+++...+.+.+.|+.... ...+.++++|+||.+- |. .+.++..-.
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~a~~ 92 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAAAAA 92 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHHHHH
Confidence 379999999999999999999999999999887776666666776532 2345567899888764 22 122222210
Q ss_pred ------ccccccccc-------CCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 76 ------DKGGVLEQI-------CPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 76 ------~~~~l~~~l-------~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
++-++.-.. .+..+|--+.| ....++.-+++.+...|....-..-.|.|
T Consensus 93 ~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~g~~~~~~GniG~p 155 (488)
T PRK03369 93 AGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAAGRRSVLCGNIGSP 155 (488)
T ss_pred CCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHcCCceEEeCCCchH
Confidence 111111111 12245544444 56667777788888777543322234444
No 278
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=97.53 E-value=0.00071 Score=55.26 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=69.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|+.+|++|++.|. +++++|.+.=....+..+ |-..+....+.++ +.++-+...+..-..
T Consensus 23 ~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~~i~~ 102 (228)
T cd00757 23 RVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNERLDA 102 (228)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecceeCH
Confidence 79999999999999999999996 688998765443333322 2222222222222 234444444321101
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
++ + .+.+..-.+||++.. .+.....+.+.+.++++.++++.+.|
T Consensus 103 ~~-~------~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~~ip~i~~g~~g 146 (228)
T cd00757 103 EN-A------EELIAGYDLVLDCTD-NFATRYLINDACVKLGKPLVSGAVLG 146 (228)
T ss_pred HH-H------HHHHhCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 11 1 122223457777754 56677788888899999999987665
No 279
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.53 E-value=0.0026 Score=56.92 Aligned_cols=114 Identities=19% Similarity=0.147 Sum_probs=70.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch----hHHHHHHCCCccc--CCHHHHhhh-CCeEEEec--C-CHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS----KCDELVAHGATVG--GSPAEVIKK-CTITIGML--A-DPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~----~~~~l~~~g~~~~--~s~~~~~~~-advvi~~~--p-~~~~~~ 71 (226)
+|.|+|.|.+|.++|+.|++.|++|.++|++.. ..+.+.+.|+... ....+.... .|+||... | +...++
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~~~~~~ 86 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYTNPMVE 86 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCCCHHHH
Confidence 689999999999999999999999999998653 2344666676553 234454444 88877754 2 223333
Q ss_pred HHhh------cccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 72 SVVF------DKGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 72 ~v~~------~~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
.... ...++...+.+..+|.-+.| ....++.-++..+...|...
T Consensus 87 ~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~~g~~~ 137 (447)
T PRK02472 87 KALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKAGGQHA 137 (447)
T ss_pred HHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHHCCCCe
Confidence 3221 11112222223344544444 56677777788887777544
No 280
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=97.51 E-value=0.00078 Score=55.51 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=73.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|+|+|.+|+.+|.+|++.|. +++++|.+.-....+..+ |-..+....+.++ +.++-+...+..- .
T Consensus 26 ~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~~~~i-~ 104 (240)
T TIGR02355 26 RVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPINAKL-D 104 (240)
T ss_pred cEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEEeccC-C
Confidence 69999999999999999999996 688888775554444432 2222222223222 3455555553211 1
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
.+. +.+.+..-.+|||++.. +.....+.+.+.+.++.++.+.+.|.
T Consensus 105 ~~~------~~~~~~~~DlVvd~~D~-~~~r~~ln~~~~~~~ip~v~~~~~g~ 150 (240)
T TIGR02355 105 DAE------LAALIAEHDIVVDCTDN-VEVRNQLNRQCFAAKVPLVSGAAIRM 150 (240)
T ss_pred HHH------HHHHhhcCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEEEeccc
Confidence 111 11223345688887754 66777788899999999999877764
No 281
>PRK05086 malate dehydrogenase; Provisional
Probab=97.50 E-value=0.0005 Score=58.83 Aligned_cols=65 Identities=18% Similarity=0.338 Sum_probs=46.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHh---CCCeEEEEcCCchhH---HHHHHCC--Ccc----cCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR---NGFKVTVWNRTLSKC---DELVAHG--ATV----GGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~---~G~~V~~~dr~~~~~---~~l~~~g--~~~----~~s~~~~~~~advvi~~~p 65 (226)
|||+|||+ |.+|..++..|.. .++++.++|+++... -.+...+ ..+ ..++.+.++++|+||+|.-
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG 78 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAG 78 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCC
Confidence 89999999 9999999988854 346899999986531 1233212 122 2455678889999999974
No 282
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=97.50 E-value=0.00014 Score=61.21 Aligned_cols=90 Identities=23% Similarity=0.368 Sum_probs=67.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCc--c----cCCHHHHhhhCCeEEEec--CCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT--V----GGSPAEVIKKCTITIGML--ADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~--~----~~s~~~~~~~advvi~~~--p~~~~~~~ 72 (226)
+|.|||-|..|+.-|+...-.|.+|++.|+|.+++..+... +.+ . ...+++.+.++|+||-++ |...+ ..
T Consensus 170 kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgaka-Pk 248 (371)
T COG0686 170 KVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKA-PK 248 (371)
T ss_pred cEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCC-ce
Confidence 68999999999999999999999999999999988777654 322 1 234667788999999876 33221 12
Q ss_pred HhhcccccccccCCCcEEEecC
Q 027255 73 VVFDKGGVLEQICPGKGYIDMS 94 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~s 94 (226)
+.+ ++....++||.+|||..
T Consensus 249 Lvt--~e~vk~MkpGsVivDVA 268 (371)
T COG0686 249 LVT--REMVKQMKPGSVIVDVA 268 (371)
T ss_pred ehh--HHHHHhcCCCcEEEEEE
Confidence 221 44557899999999975
No 283
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.49 E-value=0.0025 Score=57.67 Aligned_cols=115 Identities=14% Similarity=0.106 Sum_probs=72.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHH-HHCCCcccC--CHHHHhhhCCeEEEec---CCHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDEL-VAHGATVGG--SPAEVIKKCTITIGML---ADPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l-~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~~v~ 74 (226)
++|.|+|+|..|.++|+.|.+.|++|+++|+++....++ ...|+.... ...+-+.++|+||..- |+...+....
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~~~~a~ 95 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPLLVDAQ 95 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHHHHHHH
Confidence 369999999999999999999999999999987665543 344776543 2334456789888762 2323333322
Q ss_pred h-c-----ccccccc------c-CCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 75 F-D-----KGGVLEQ------I-CPGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 75 ~-~-----~~~l~~~------l-~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
. | .-++.-. . .+.++|--+.| ....++.-+++.+...|...
T Consensus 96 ~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~g~~~ 150 (473)
T PRK00141 96 SQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEGGFAA 150 (473)
T ss_pred HCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhcCCcE
Confidence 1 1 0011100 1 13345555555 56667777778887777654
No 284
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=97.48 E-value=0.00032 Score=60.31 Aligned_cols=58 Identities=12% Similarity=0.169 Sum_probs=41.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEe
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGM 63 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~ 63 (226)
.+|.|||+|.||...+++|.++|. +|++.||+.... .+.... ....+....+|+||+|
T Consensus 175 k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~~~~~~----~~~~~~~~~~DvVIs~ 233 (338)
T PRK00676 175 ASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-PYRTVV----REELSFQDPYDVIFFG 233 (338)
T ss_pred CEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-chhhhh----hhhhhcccCCCEEEEc
Confidence 378999999999999999999995 699999998531 111110 0111334578999986
No 285
>PRK08223 hypothetical protein; Validated
Probab=97.48 E-value=0.00089 Score=56.37 Aligned_cols=123 Identities=18% Similarity=0.196 Sum_probs=75.9
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|+.++.+|++.|. +++++|.+.=....+..+ |-..+....+.+. +.++=+...+..- .
T Consensus 29 ~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~~~~l-~ 107 (287)
T PRK08223 29 RVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAFPEGI-G 107 (287)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEEeccc-C
Confidence 69999999999999999999996 688888765444444333 2222222333332 2344344443211 0
Q ss_pred HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEe
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILS 136 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~ 136 (226)
. +.+.+.+..-.+|||++.. ....-..+.+.+.+.++.++.+.+.|.. |.+.++.
T Consensus 108 ~------~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~-----gqv~v~~ 163 (287)
T PRK08223 108 K------ENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMG-----TALLVFD 163 (287)
T ss_pred c------cCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCe-----EEEEEEc
Confidence 1 1111223344688888865 3466777888889999999998777643 4555554
No 286
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=97.47 E-value=0.00033 Score=57.01 Aligned_cols=64 Identities=27% Similarity=0.348 Sum_probs=52.5
Q ss_pred EEEEec-ChhHHHHHHHHHhCCCeEEEEcCCch--hHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecCC
Q 027255 3 VGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAHGATV-------GGSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 3 IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~--~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p~ 66 (226)
|.|+|. |..|+.+++.|.+.+|+|.+.-|++. ..+.+...|+++ ..++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689996 99999999999999999999988864 466777788654 23455678899999999983
No 287
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=97.45 E-value=0.0012 Score=52.72 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=70.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~ 69 (226)
.+|.|||+|.+|..++++|+..|. +++++|.+.=....+..+ |-..+....+.++ +.++-+.+.+..
T Consensus 22 s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~~~~~-- 99 (197)
T cd01492 22 ARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASLERLRALNPRVKVSVDTDD-- 99 (197)
T ss_pred CcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHHHHHHHHCCCCEEEEEecC--
Confidence 379999999999999999999997 599998764333333221 2222222222222 356655544321
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
+.+.. + +.+..-.+||+++. .+.....+.+.+.++++.++.+-+.|.
T Consensus 100 ~~~~~---~---~~~~~~dvVi~~~~-~~~~~~~ln~~c~~~~ip~i~~~~~G~ 146 (197)
T cd01492 100 ISEKP---E---EFFSQFDVVVATEL-SRAELVKINELCRKLGVKFYATGVHGL 146 (197)
T ss_pred ccccH---H---HHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEecCC
Confidence 11111 1 11223357777644 577788899999999999888877663
No 288
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=97.44 E-value=0.0015 Score=52.23 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=69.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC----------CCcccCCHHHHhh--hCCeEEEecCCH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH----------GATVGGSPAEVIK--KCTITIGMLADP 67 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~--~advvi~~~p~~ 67 (226)
.+|.|||+|.+|..++++|+..|. +++++|.+.-....+..+ |...+....+.++ +.++-+......
T Consensus 20 s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~~~~L~~lNp~v~i~~~~~~ 99 (198)
T cd01485 20 AKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAASYEFLQELNPNVKLSIVEED 99 (198)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHHHHHHHHHCCCCEEEEEecc
Confidence 379999999999999999999996 599998764332233221 2211212222222 345555444321
Q ss_pred HH-HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 68 AA-ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 68 ~~-~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
.. ..+-. . ..+.+-.+||++. ..+.....+.+.+.++++.++.+-+.|.
T Consensus 100 ~~~~~~~~---~---~~~~~~dvVi~~~-d~~~~~~~ln~~c~~~~ip~i~~~~~G~ 149 (198)
T cd01485 100 SLSNDSNI---E---EYLQKFTLVIATE-ENYERTAKVNDVCRKHHIPFISCATYGL 149 (198)
T ss_pred cccchhhH---H---HHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 10 01111 1 1223345777774 4477778889999999998888866553
No 289
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00046 Score=57.79 Aligned_cols=74 Identities=15% Similarity=0.231 Sum_probs=59.1
Q ss_pred CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
.+|.|||-+ ..|+++|..|...|..|++++++. .++.+.+++||+||.+++.+..+..
T Consensus 153 k~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t--------------~~L~~~~~~ADIvI~Avgk~~lv~~------- 211 (279)
T PRK14178 153 KRAVVVGRSIDVGRPMAALLLNADATVTICHSKT--------------ENLKAELRQADILVSAAGKAGFITP------- 211 (279)
T ss_pred CEEEEECCCccccHHHHHHHHhCCCeeEEEecCh--------------hHHHHHHhhCCEEEECCCcccccCH-------
Confidence 368999998 999999999999999999988653 3577888999999999976532221
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
..+++|.+|||.+...
T Consensus 212 --~~vk~GavVIDVgi~~ 227 (279)
T PRK14178 212 --DMVKPGATVIDVGINQ 227 (279)
T ss_pred --HHcCCCcEEEEeeccc
Confidence 2358999999988653
No 290
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.44 E-value=0.00064 Score=56.96 Aligned_cols=74 Identities=22% Similarity=0.240 Sum_probs=59.2
Q ss_pred CeEEEEecC-hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLG-IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G-~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||-+ ..|.++|..|.++|..|++++... .++.+.+++||+|++++..+..+..
T Consensus 158 k~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T--------------~~l~~~~~~ADIvV~AvGkp~~i~~------- 216 (281)
T PRK14183 158 KDVCVVGASNIVGKPMAALLLNANATVDICHIFT--------------KDLKAHTKKADIVIVGVGKPNLITE------- 216 (281)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------cCHHHHHhhCCEEEEecCcccccCH-------
Confidence 378999998 899999999999999999886432 3456788999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.++||.++..
T Consensus 217 --~~vk~gavvIDvGin~ 232 (281)
T PRK14183 217 --DMVKEGAIVIDIGINR 232 (281)
T ss_pred --HHcCCCcEEEEeeccc
Confidence 3467999999998654
No 291
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=97.43 E-value=0.0015 Score=53.99 Aligned_cols=114 Identities=18% Similarity=0.144 Sum_probs=70.9
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|+.++++|+..|. +++++|.+.=....+..+ |...+....+.+. +.++-+...+..-.
T Consensus 34 ~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~- 112 (245)
T PRK05690 34 RVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETINARLD- 112 (245)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEEeccCC-
Confidence 79999999999999999999996 688998765444444332 2222222222222 24554444432110
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
.+- +.+.+..-.+||+++. .+.....+.+.+.++++.++.+.+.|.
T Consensus 113 ~~~------~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~ip~v~~~~~g~ 158 (245)
T PRK05690 113 DDE------LAALIAGHDLVLDCTD-NVATRNQLNRACFAAKKPLVSGAAIRM 158 (245)
T ss_pred HHH------HHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCCEEEEeeeccC
Confidence 111 1122334568888865 556666788888889999998866553
No 292
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.42 E-value=0.0014 Score=58.76 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=68.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc-hhH----HHHHHCCCcc--cCCHHHHhhhCCeEEEecCCH---HHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKC----DELVAHGATV--GGSPAEVIKKCTITIGMLADP---AAA 70 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~----~~l~~~g~~~--~~s~~~~~~~advvi~~~p~~---~~~ 70 (226)
++|.|+|.|.+|.++|+.|++.|++|+++|++. +.. +++.+.|+.+ .....+....+|+||.+.-.. +.+
T Consensus 6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~~~~~ 85 (450)
T PRK14106 6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLDSPPV 85 (450)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCCCHHH
Confidence 479999999999999999999999999999975 333 3444446543 223345566799999875321 111
Q ss_pred HHHhh-cc-----cccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255 71 LSVVF-DK-----GGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGG 113 (226)
Q Consensus 71 ~~v~~-~~-----~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~ 113 (226)
...-. |- -+......+..+|.-+.| ....+..-++..+...|.
T Consensus 86 ~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~~g~ 135 (450)
T PRK14106 86 VQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKNAGR 135 (450)
T ss_pred HHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCC
Confidence 11110 00 001111112445544545 566666677777776653
No 293
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=97.41 E-value=0.0012 Score=53.47 Aligned_cols=111 Identities=16% Similarity=0.191 Sum_probs=63.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCCHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~~~~~~ 71 (226)
+|.|||+|.+|+.+|.+|++.|. +++++|.+.=....+..+ |-..+....+-++ +.++-+...+.. ...
T Consensus 30 ~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~~~-i~~ 108 (212)
T PRK08644 30 KVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHNEK-IDE 108 (212)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEeee-cCH
Confidence 69999999999999999999997 499999874322222222 2111111122221 234444333221 001
Q ss_pred HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhc-CCcEEecCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSK-GGHFLEAPV 120 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~-g~~~ld~pv 120 (226)
+.+ . +.+..-.+||+++ -.+.....+.+.+.+. +..++.+..
T Consensus 109 ~~~---~---~~~~~~DvVI~a~-D~~~~r~~l~~~~~~~~~~p~I~~~~ 151 (212)
T PRK08644 109 DNI---E---ELFKDCDIVVEAF-DNAETKAMLVETVLEHPGKKLVAASG 151 (212)
T ss_pred HHH---H---HHHcCCCEEEECC-CCHHHHHHHHHHHHHhCCCCEEEeeh
Confidence 111 1 1223346888884 4555566777888887 888877643
No 294
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=97.40 E-value=0.0006 Score=58.32 Aligned_cols=89 Identities=19% Similarity=0.268 Sum_probs=57.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC-----CC---cc-cCCHHHH-hhhCCeEEEecCCHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH-----GA---TV-GGSPAEV-IKKCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~-----g~---~~-~~s~~~~-~~~advvi~~~p~~~ 68 (226)
+||+|||. |.-|..+.+.|..+- .++..+..+..+-+.+.+. |. .. ..+++++ .++||+||+|+|+..
T Consensus 3 ~kV~IvGasGYtG~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~ 82 (349)
T COG0002 3 IKVGIVGASGYTGLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGV 82 (349)
T ss_pred ceEEEEcCCCCcHHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchh
Confidence 58999997 999999999998874 4666665443222233322 21 11 1233343 345899999999976
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
..+-+- ..+.+|..|||+|+-
T Consensus 83 s~~~v~-------~l~~~g~~VIDLSad 103 (349)
T COG0002 83 SAELVP-------ELLEAGCKVIDLSAD 103 (349)
T ss_pred HHHHHH-------HHHhCCCeEEECCcc
Confidence 554442 334467779999974
No 295
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=97.39 E-value=0.00032 Score=61.68 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=38.9
Q ss_pred CeEEEEecChhHHHH-HHHHHhCCCeEEEEcCCchhHHHHHHCC
Q 027255 1 MEVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (226)
Q Consensus 1 m~IgvIG~G~mG~~~-A~~l~~~G~~V~~~dr~~~~~~~l~~~g 43 (226)
|||.++|+|+||++. ...|.+.|++|++.|++++.++.+.++|
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~g~~V~~vd~~~~~v~aL~~qg 44 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADNGFEVTFVDVNQELIDALNKRK 44 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhCCCeEEEEECCHHHHHHHhcCC
Confidence 899999999999954 7888889999999999999999998876
No 296
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=97.39 E-value=0.0016 Score=55.06 Aligned_cols=113 Identities=14% Similarity=0.113 Sum_probs=77.6
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhcc
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~~ 77 (226)
||.|.|. |.+|..+.++|.+.|++ .+|-.||.. .+++ .|.....+.+++-+. .|+.++++|. +.+.+++
T Consensus 10 ~~~v~~~~~~~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v--~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l--- 82 (291)
T PRK05678 10 KVIVQGITGKQGTFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFNTVAEAVEATGANASVIYVPP-PFAADAI--- 82 (291)
T ss_pred eEEEeCCCchHHHHHHHHHHHCCCC-EEEEECCCCCCCeE--eCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHH---
Confidence 6888997 88999999999999987 554444431 1111 488889999999987 8999999987 5666666
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
++..+. .-...+|-++-...+..+++.+.++++|++++---..|
T Consensus 83 ~e~~~~-gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~G 126 (291)
T PRK05678 83 LEAIDA-GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPG 126 (291)
T ss_pred HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCc
Confidence 333331 12234444444455555688999999998877543333
No 297
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=97.38 E-value=0.00072 Score=58.17 Aligned_cols=67 Identities=19% Similarity=0.301 Sum_probs=50.0
Q ss_pred EEEEecChhHHHHHHHHHhC-CCeEE-EEcCCchhHHHHHH-C------------------CCcccCCHHHHhhhCCeEE
Q 027255 3 VGFLGLGIMGKAISMNLLRN-GFKVT-VWNRTLSKCDELVA-H------------------GATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~-G~~V~-~~dr~~~~~~~l~~-~------------------g~~~~~s~~~~~~~advvi 61 (226)
|||+|+|.+|+.+++.+... +.+|. +.|.+++....+.. . ++.+..+++++.+++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 68999999999999998754 46655 56777775544443 1 2344567999999999999
Q ss_pred EecCCHHH
Q 027255 62 GMLADPAA 69 (226)
Q Consensus 62 ~~~p~~~~ 69 (226)
.|+|....
T Consensus 81 e~Tp~~~~ 88 (333)
T TIGR01546 81 DATPGGIG 88 (333)
T ss_pred ECCCCCCC
Confidence 99987543
No 298
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=97.38 E-value=0.001 Score=61.02 Aligned_cols=112 Identities=16% Similarity=0.145 Sum_probs=70.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCcc--cCCHHHH-hhhCCeEEEecCCHHHHHHHhhcc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GATV--GGSPAEV-IKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~~~-~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
++.|+|.|.+|++++..|++.|++|+++||+.++.+.+.+. +... ..+..+. ...+|+|+.++|-.-. ...- .
T Consensus 381 ~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~-~~~~--~ 457 (529)
T PLN02520 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQ-PNVD--E 457 (529)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCC-CCCC--C
Confidence 57899999999999999999999999999999998888653 2211 1122221 2346778777764321 0000 0
Q ss_pred ccc-ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 78 GGV-LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 78 ~~l-~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
..+ ...+++..+++|+.-.... -.+.+.++++|+..+++
T Consensus 458 ~pl~~~~l~~~~~v~D~vY~P~~--T~ll~~A~~~G~~~~~G 497 (529)
T PLN02520 458 TPISKHALKHYSLVFDAVYTPKI--TRLLREAEESGAIIVSG 497 (529)
T ss_pred CcccHhhCCCCCEEEEeccCCCc--CHHHHHHHHCCCeEeCc
Confidence 001 1235567889998654322 23455566778776654
No 299
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=97.35 E-value=0.023 Score=49.77 Aligned_cols=67 Identities=18% Similarity=0.206 Sum_probs=51.3
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC-----C--------------------CcccCCHHHHhh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH-----G--------------------ATVGGSPAEVIK 55 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~-----g--------------------~~~~~s~~~~~~ 55 (226)
+|-|+|.|..+-.+|..+.+.+. +|-+.+|...+.+++.+. + -....+.+++..
T Consensus 3 ~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g 82 (429)
T PF10100_consen 3 NVLIVGTGPVAIQLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEG 82 (429)
T ss_pred ceEEEcCCHHHHHHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcc
Confidence 68999999999999999998775 699999987777665431 1 123455666666
Q ss_pred hCCeEEEecCCHH
Q 027255 56 KCTITIGMLADPA 68 (226)
Q Consensus 56 ~advvi~~~p~~~ 68 (226)
+=|.+|+|+|.++
T Consensus 83 ~WdtlILavtaDA 95 (429)
T PF10100_consen 83 EWDTLILAVTADA 95 (429)
T ss_pred cccEEEEEechHH
Confidence 7799999998854
No 300
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.35 E-value=0.0024 Score=57.25 Aligned_cols=124 Identities=14% Similarity=0.084 Sum_probs=77.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch--hHHHHHH--CCCcccC--CHHHHhhhCCeEEEec--C-CHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVA--HGATVGG--SPAEVIKKCTITIGML--A-DPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~--~~~~l~~--~g~~~~~--s~~~~~~~advvi~~~--p-~~~~~~~ 72 (226)
.|.|||+|..|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+|+..- | +.+.+..
T Consensus 8 ~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~ 87 (448)
T PRK03803 8 LHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRA 87 (448)
T ss_pred eEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHH
Confidence 489999999999999999999999999997643 2234555 3665532 2334556889887653 2 2233332
Q ss_pred Hhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCChH
Q 027255 73 VVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSKQ 125 (226)
Q Consensus 73 v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~ 125 (226)
... | +.+++..+.+..+|.-+.| ....++.-++..+...|..+.-+...|.|.
T Consensus 88 a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p~ 147 (448)
T PRK03803 88 AAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTPA 147 (448)
T ss_pred HHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHHH
Confidence 221 1 1122222223445544544 567777788888888887766665566554
No 301
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.35 E-value=0.00049 Score=58.72 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=47.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHH----HHHC-------CCcccCCHHHHhhhCCeEEEecC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDE----LVAH-------GATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~----l~~~-------g~~~~~s~~~~~~~advvi~~~p 65 (226)
||+|||+|.+|..+|..|+.++. ++.++|+++++++. +... ..++....-+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 79999999999999999998875 79999998775533 2221 12233344577889999999763
No 302
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=97.35 E-value=0.0011 Score=52.55 Aligned_cols=86 Identities=12% Similarity=0.220 Sum_probs=60.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH-----CCCc----ccCCHHHHhhhCCeEEEecCCHHH-
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA-----HGAT----VGGSPAEVIKKCTITIGMLADPAA- 69 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~-----~g~~----~~~s~~~~~~~advvi~~~p~~~~- 69 (226)
++|.|||- ...|.++|..|.+.|..|+++|.+.-.. +.. +-.+ ...++.+.+++||+||++++.+..
T Consensus 63 K~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~ 140 (197)
T cd01079 63 KTITIINRSEVVGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYK 140 (197)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCc
Confidence 36889987 5689999999999999999997543221 110 0001 011267889999999999998664
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~ 97 (226)
+.. +.+++|.++||.++..
T Consensus 141 i~~---------d~ik~GavVIDVGi~~ 159 (197)
T cd01079 141 VPT---------ELLKDGAICINFASIK 159 (197)
T ss_pred cCH---------HHcCCCcEEEEcCCCc
Confidence 321 3467999999998763
No 303
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=97.35 E-value=0.0004 Score=56.13 Aligned_cols=67 Identities=25% Similarity=0.330 Sum_probs=47.7
Q ss_pred eEEEEecChhHHHHHHHHH--hCCCeEE-EEcCCchhHHHHHHCC--CcccCCHHHHhhh--CCeEEEecCCHHH
Q 027255 2 EVGFLGLGIMGKAISMNLL--RNGFKVT-VWNRTLSKCDELVAHG--ATVGGSPAEVIKK--CTITIGMLADPAA 69 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~--~~G~~V~-~~dr~~~~~~~l~~~g--~~~~~s~~~~~~~--advvi~~~p~~~~ 69 (226)
+|+|||+|.+|..+++.+. ..|+++. ++|+++++..... .| +....++.++++. .|+|++|+|...+
T Consensus 86 rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~ 159 (213)
T PRK05472 86 NVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEAA 159 (213)
T ss_pred EEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhH
Confidence 7999999999999998643 4678866 5788877653322 12 2233456677654 8999999998554
No 304
>PLN02602 lactate dehydrogenase
Probab=97.35 E-value=0.00055 Score=59.45 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=46.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC-----CCccc--CCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH-----GATVG--GSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~-----g~~~~--~s~~~~~~~advvi~~~ 64 (226)
+||+|||+|.+|..+|..|+..+. ++.++|+++++++... .. ...+. .+.+ .+++||+||++.
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~-~~~daDiVVitA 113 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA-VTAGSDLCIVTA 113 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH-HhCCCCEEEECC
Confidence 389999999999999999998875 7999999887654322 11 12332 2444 478999999985
No 305
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=97.34 E-value=0.00056 Score=59.26 Aligned_cols=89 Identities=18% Similarity=0.193 Sum_probs=55.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCC-CeEEEE-cCCchhHHHHHHC-------CC-------cccCCHHHHhhhCCeEEEe
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAH-------GA-------TVGGSPAEVIKKCTITIGM 63 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~-dr~~~~~~~l~~~-------g~-------~~~~s~~~~~~~advvi~~ 63 (226)
|||+|+|+ |.||+.+++.|..+. +++... +.+++.-+.+... +. .+.....+...++|+||.|
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVf~a 80 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKHPYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDVDIVFSA 80 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccCCEEEEe
Confidence 79999996 999999999998876 576654 5543322222110 01 1111122345789999999
Q ss_pred cCCHHHHHHHhhcccccccccCCCcEEEecCCC
Q 027255 64 LADPAAALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 64 ~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+|...+. ++. . .....|..+||.|..
T Consensus 81 ~p~~~s~-~~~---~---~~~~~G~~VIDlsg~ 106 (341)
T TIGR00978 81 LPSEVAE-EVE---P---KLAEAGKPVFSNASN 106 (341)
T ss_pred CCHHHHH-HHH---H---HHHHCCCEEEECChh
Confidence 9985443 333 2 223468888888743
No 306
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.34 E-value=0.00041 Score=59.92 Aligned_cols=88 Identities=16% Similarity=0.212 Sum_probs=54.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEE--EcCCchhHH-HHHHCC--Cccc-CCHHHHhhhCCeEEEecCCHHHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTV--WNRTLSKCD-ELVAHG--ATVG-GSPAEVIKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~--~dr~~~~~~-~l~~~g--~~~~-~s~~~~~~~advvi~~~p~~~~~~~v 73 (226)
|||+|+|+ |..|..+.+.|.+.+|++.- +-.+.+... .+.-.+ ..+. .+..+ ++++|++|+++|.. ....+
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~ 82 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEERDFPVGTLHLLASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSF 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHH
Confidence 47999997 99999999999987775321 212222221 111112 2221 12223 47899999999974 44444
Q ss_pred hhcccccccccCCCcEEEecCCC
Q 027255 74 VFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+ .. ..+.|..+||.|..
T Consensus 83 v---~~---~~~~G~~VIDlS~~ 99 (336)
T PRK05671 83 A---EK---ARAAGCSVIDLSGA 99 (336)
T ss_pred H---HH---HHHCCCeEEECchh
Confidence 4 22 23468899999953
No 307
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=97.33 E-value=0.00092 Score=56.79 Aligned_cols=110 Identities=14% Similarity=0.058 Sum_probs=76.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHH---HHHHhhc--
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAA---ALSVVFD-- 76 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~---~~~v~~~-- 76 (226)
+++|||--.=-..+++.|.+.|++|+++.-+.+. ....|+..+.+.+++++++|+|+..+|.... ++..+..
T Consensus 4 ~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~~~---~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~ 80 (296)
T PRK08306 4 HIAVIGGDARQLELIRKLVELGAKVSLVGFDQLD---HGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEK 80 (296)
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEeccccc---cccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccC
Confidence 7899999888899999999999999997654332 2334888888889999999999998774211 1111100
Q ss_pred ---ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 77 ---KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 77 ---~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
+...++.++++++++ .+...|... +.+.++|+.++|.+
T Consensus 81 ~~~~~~~l~~l~~~~~v~-~G~~~~~~~----~~~~~~gi~~~~~~ 121 (296)
T PRK08306 81 LVLTEELLELTPEHCTIF-SGIANPYLK----ELAKETNRKLVELF 121 (296)
T ss_pred CcchHHHHHhcCCCCEEE-EecCCHHHH----HHHHHCCCeEEEEe
Confidence 123456788887555 455666632 45668899887764
No 308
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.33 E-value=0.00049 Score=49.05 Aligned_cols=65 Identities=20% Similarity=0.177 Sum_probs=44.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-cCCHHHHhhhCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-GGSPAEVIKKCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~~~~~~advvi~~~p~~~~~ 70 (226)
+|.|||.|.+|..=++.|++.|.+|+++.++.+..+ ..++. ....++.++++++|+.++.++..-
T Consensus 9 ~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~----~~i~~~~~~~~~~l~~~~lV~~at~d~~~n 74 (103)
T PF13241_consen 9 RVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE----GLIQLIRREFEEDLDGADLVFAATDDPELN 74 (103)
T ss_dssp EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH----TSCEEEESS-GGGCTTESEEEE-SS-HHHH
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh----hHHHHHhhhHHHHHhhheEEEecCCCHHHH
Confidence 689999999999999999999999999998862111 22221 122234466778788777664433
No 309
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=97.32 E-value=0.00053 Score=57.45 Aligned_cols=65 Identities=11% Similarity=-0.050 Sum_probs=46.3
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC----CcccCCHHHHh------hh-CCeEEEecCC
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG----ATVGGSPAEVI------KK-CTITIGMLAD 66 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g----~~~~~s~~~~~------~~-advvi~~~p~ 66 (226)
+|.|+|. |.+|+.+++.|.+.|++|++..|++++........ ..-.+++.+++ +. +|.|+.+.|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 5788987 99999999999999999999999987643210001 11123444555 45 8999988774
No 310
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=97.32 E-value=0.00079 Score=55.53 Aligned_cols=107 Identities=14% Similarity=0.153 Sum_probs=79.5
Q ss_pred EEEEecChhHHHHHHHHHhCC---CeEEEEcCCchhHHHHHHC----------CCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255 3 VGFLGLGIMGKAISMNLLRNG---FKVTVWNRTLSKCDELVAH----------GATVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 3 IgvIG~G~mG~~~A~~l~~~G---~~V~~~dr~~~~~~~l~~~----------g~~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
..++|.|...........+.- .+|.+|+|+++.++.+++. -+..+.+.++++..+|+|+.|++.
T Consensus 141 L~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls--- 217 (333)
T KOG3007|consen 141 LTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS--- 217 (333)
T ss_pred EEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---
Confidence 468999999988877665532 4799999999998888762 245678899999999999999976
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
.+.+++| +.++||+.|=-..+..|. ..+.-..+-+.++.|+|.
T Consensus 218 tePilfg-----ewlkpgthIdlVGsf~p~-mhEcDdelIq~a~vfVDs 260 (333)
T KOG3007|consen 218 TEPILFG-----EWLKPGTHIDLVGSFKPV-MHECDDELIQSACVFVDS 260 (333)
T ss_pred CCceeee-----eeecCCceEeeeccCCch-HHHHhHHHhhhheEEEec
Confidence 3455654 356688655444555554 556677777788999997
No 311
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.31 E-value=0.00094 Score=57.41 Aligned_cols=65 Identities=14% Similarity=0.201 Sum_probs=47.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCchh--HH----HHHHC------CCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CD----ELVAH------GATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~~--~~----~l~~~------g~~~~~s~~~~~~~advv 60 (226)
+||+|||+ |.+|..+|..|+..|. ++.++|+++.. ++ .+... ...+..+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 58999999 9999999999998775 79999995432 22 12211 123445566788999999
Q ss_pred EEecC
Q 027255 61 IGMLA 65 (226)
Q Consensus 61 i~~~p 65 (226)
|++.-
T Consensus 83 vitaG 87 (322)
T cd01338 83 LLVGA 87 (322)
T ss_pred EEeCC
Confidence 99863
No 312
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=97.31 E-value=0.0033 Score=56.47 Aligned_cols=112 Identities=18% Similarity=0.216 Sum_probs=71.4
Q ss_pred eEEEEecChhHHH-HHHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhhCCeEEEec--C-CHHHHHHHhh
Q 027255 2 EVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~~~~~~advvi~~~--p-~~~~~~~v~~ 75 (226)
+|-|||.|..|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+|+..- | +...++....
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKE 80 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHH
Confidence 4789999999998 99999999999999997654 33456666876643 2234456789888752 2 2233433221
Q ss_pred ------cccccccc-cCCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255 76 ------DKGGVLEQ-ICPGKGYIDMST-VDHETSIKISRAITSKGG 113 (226)
Q Consensus 76 ------~~~~l~~~-l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~ 113 (226)
++.+++.. +++..+|.-+.| ....++.-++..+...|.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g~ 126 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAGL 126 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcCC
Confidence 11122222 223345544444 677777778888888785
No 313
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=97.31 E-value=0.0032 Score=56.70 Aligned_cols=113 Identities=20% Similarity=0.249 Sum_probs=72.5
Q ss_pred CeEEEEecChhHHH-HHHHHHhCCCeEEEEcCCch-hHHHHHHCCCccc-CCHHHHhhhCCeEEEec--C-CHHHHHHHh
Q 027255 1 MEVGFLGLGIMGKA-ISMNLLRNGFKVTVWNRTLS-KCDELVAHGATVG-GSPAEVIKKCTITIGML--A-DPAAALSVV 74 (226)
Q Consensus 1 m~IgvIG~G~mG~~-~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~-~s~~~~~~~advvi~~~--p-~~~~~~~v~ 74 (226)
++|.|||+|..|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+... ....+.++++|+||..- | +...++...
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 87 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELVAAR 87 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHH
Confidence 47999999999999 89999999999999997653 3445666677653 22334556789888753 2 223333322
Q ss_pred h------ccccccccc-CCCcEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255 75 F------DKGGVLEQI-CPGKGYIDMST-VDHETSIKISRAITSKGG 113 (226)
Q Consensus 75 ~------~~~~l~~~l-~~g~ivvd~st-~~~~~~~~l~~~~~~~g~ 113 (226)
. ++.+++..+ .+..+|.-+.| ....++.-+.+.++..|.
T Consensus 88 ~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g~ 134 (461)
T PRK00421 88 ELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAGL 134 (461)
T ss_pred HCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 1 112232222 22345544444 677777778888888774
No 314
>PLN02477 glutamate dehydrogenase
Probab=97.30 E-value=0.0016 Score=57.58 Aligned_cols=162 Identities=14% Similarity=0.166 Sum_probs=91.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCC----------chhHHHHHHCC--------CcccCCHHHH-hhhCCeE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVAHG--------ATVGGSPAEV-IKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~----------~~~~~~l~~~g--------~~~~~s~~~~-~~~advv 60 (226)
++|.|.|+|++|+..|+.|.+.|.+|+ +.|.+ .+.+.+..+.+ .+.. +.+++ ..+||++
T Consensus 207 ~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i-~~~e~l~~~~Dvl 285 (410)
T PLN02477 207 QTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPI-DPDDILVEPCDVL 285 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEe-cCccceeccccEE
Confidence 479999999999999999999999987 66776 55553433321 1212 22332 3478988
Q ss_pred EEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccCC
Q 027255 61 IGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGEK 140 (226)
Q Consensus 61 i~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~~ 140 (226)
+-|--......+.+ +.+ +=++|+...+... +.+..+.+.++|+.|+.--+ +..|-. .+
T Consensus 286 iP~Al~~~I~~~na-------~~i-~ak~I~egAN~p~--t~ea~~~L~~rGI~~~PD~~------aNaGGV--iv---- 343 (410)
T PLN02477 286 IPAALGGVINKENA-------ADV-KAKFIVEAANHPT--DPEADEILRKKGVVVLPDIY------ANSGGV--TV---- 343 (410)
T ss_pred eeccccccCCHhHH-------HHc-CCcEEEeCCCCCC--CHHHHHHHHHCCcEEEChHH------hCCCCe--ee----
Confidence 87753322222222 223 3456666665432 44556788899998864322 222222 11
Q ss_pred CCCCCcchhhcccccccccCcccC---Cccch-HHHHHHHHHHHHHhhcCCCchHHH
Q 027255 141 DLGGIANPMFKGKGPTMLQSNYAP---AFPLK-HQQKDMRLALALGDENAVSMPIAA 193 (226)
Q Consensus 141 ~~~~~~s~~~~~~~~~~~~~~~~~---~~~~~-~~~kd~~~~~~~a~~~g~~~p~~~ 193 (226)
.+++.... ...-.|.. .-.++ .+.+-++.+.+.+++.++++...+
T Consensus 344 -------s~~E~~qn-~~~~~w~~~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA 392 (410)
T PLN02477 344 -------SYFEWVQN-IQGFMWEEEKVNRELDRYMTDAFKALKEMCKTHNCSLRMGA 392 (410)
T ss_pred -------eHHHhhhc-cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHH
Confidence 12222110 00001111 12344 556778888999999998765543
No 315
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=97.30 E-value=0.00053 Score=58.52 Aligned_cols=78 Identities=24% Similarity=0.206 Sum_probs=52.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
+||+|||. |..|..+.+.|.++-+ ++.....+..+ .. .+.++.++++|+||+|+|+.... ++. .
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~~s~-~~~---~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDDAAR-EAV---A 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHHHHH-HHH---H
Confidence 48999995 9999999999998763 44333222221 01 23345567899999999986444 443 2
Q ss_pred ccccccCCCcEEEecCC
Q 027255 79 GVLEQICPGKGYIDMST 95 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st 95 (226)
.+ .+.|..|||+|+
T Consensus 69 ~~---~~~g~~VIDlSa 82 (313)
T PRK11863 69 LI---DNPATRVIDAST 82 (313)
T ss_pred HH---HhCCCEEEECCh
Confidence 22 347889999994
No 316
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0029 Score=52.27 Aligned_cols=110 Identities=23% Similarity=0.275 Sum_probs=72.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCC-CeE-EEEcCCchhH-----HHHH---HCCCcccCCHHHHhhhCCeEEEecCCHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNG-FKV-TVWNRTLSKC-----DELV---AHGATVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G-~~V-~~~dr~~~~~-----~~l~---~~g~~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
|||+|.|+ |.||+.+.+.+.... +++ -.++|.++.. .++. ..|+.+.+++.....++|++|=.+ .|+.
T Consensus 3 iki~V~Ga~GRMG~~ii~~v~~~~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v~~~~~~~~~~~DV~IDFT-~P~~ 81 (266)
T COG0289 3 IKVAVAGASGRMGRTLIRAVLEAPDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPVTDDLLLVKADADVLIDFT-TPEA 81 (266)
T ss_pred ceEEEEcCCChHHHHHHHHHhcCCCceEEEEEecCCccccccchhhhccccccCceeecchhhcccCCCEEEECC-Cchh
Confidence 69999999 999999999998765 564 4578876532 2222 235666777778888999999877 4455
Q ss_pred HHHHhhcccccccccCCCc-EEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 70 ALSVVFDKGGVLEQICPGK-GYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~-ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
..+.+ + -.++.+. +||-+|--+++..+.+.+..++ +..+=+|
T Consensus 82 ~~~~l---~---~~~~~~~~lVIGTTGf~~e~~~~l~~~a~~--v~vv~a~ 124 (266)
T COG0289 82 TLENL---E---FALEHGKPLVIGTTGFTEEQLEKLREAAEK--VPVVIAP 124 (266)
T ss_pred hHHHH---H---HHHHcCCCeEEECCCCCHHHHHHHHHHHhh--CCEEEec
Confidence 55554 2 2233444 4554544677887777777655 4434444
No 317
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=97.28 E-value=0.0013 Score=55.91 Aligned_cols=76 Identities=24% Similarity=0.189 Sum_probs=52.1
Q ss_pred eEEEEec-ChhHHHHHHHHHhCC-CeEEEE-cCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccc
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNG-FKVTVW-NRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKG 78 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G-~~V~~~-dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~ 78 (226)
||+|+|. |..|..+.+.|..+- +++... .+.. .. ..+.+++++++|++|+|+|+.. ..+.. .
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~----------~~-~~~~~~~~~~~D~vFlalp~~~-s~~~~---~ 67 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR----------KD-AAERAKLLNAADVAILCLPDDA-AREAV---S 67 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc----------cC-cCCHhHhhcCCCEEEECCCHHH-HHHHH---H
Confidence 7999987 999999999999874 343322 2221 11 1245567788999999999864 44443 2
Q ss_pred ccccccCCCcEEEecCC
Q 027255 79 GVLEQICPGKGYIDMST 95 (226)
Q Consensus 79 ~l~~~l~~g~ivvd~st 95 (226)
. ....|..|||+|+
T Consensus 68 ~---~~~~g~~VIDlSa 81 (310)
T TIGR01851 68 L---VDNPNTCIIDAST 81 (310)
T ss_pred H---HHhCCCEEEECCh
Confidence 2 2347889999994
No 318
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.27 E-value=0.0014 Score=55.18 Aligned_cols=74 Identities=23% Similarity=0.330 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.+.|..|++++... .++.+..++||+||+++..+..+..
T Consensus 156 k~vvViGrS~iVGkPla~lL~~~~aTVtichs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~------- 214 (287)
T PRK14173 156 KEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT--------------QDLPAVTRRADVLVVAVGRPHLITP------- 214 (287)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 36889987 6789999999999999999887432 3567888999999999988653321
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.++..
T Consensus 215 --~~vk~GavVIDVGin~ 230 (287)
T PRK14173 215 --EMVRPGAVVVDVGINR 230 (287)
T ss_pred --HHcCCCCEEEEccCcc
Confidence 4467999999998754
No 319
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=97.27 E-value=0.00042 Score=60.02 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=56.0
Q ss_pred eEEEEe-cChhHHHHHHHHHhCCCeE---EEEcCCchhHHHHHHCCC--cccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 2 EVGFLG-LGIMGKAISMNLLRNGFKV---TVWNRTLSKCDELVAHGA--TVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG-~G~mG~~~A~~l~~~G~~V---~~~dr~~~~~~~l~~~g~--~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
||+||| .|..|..+.+.|.+++|++ .++.++.+.-+.+...|. ...+-..+.++++|+||.|+|... ..+..
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~~-s~~~a- 78 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGSV-SKEFA- 78 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHHH-HHHHH-
Confidence 689999 5999999999999988873 344444333333322232 221112344578999999998854 44444
Q ss_pred cccccccccCCCcEEEecCC
Q 027255 76 DKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st 95 (226)
. ..+..|..|||.|+
T Consensus 79 --~---~~~~~G~~VID~ss 93 (339)
T TIGR01296 79 --P---KAAKCGAIVIDNTS 93 (339)
T ss_pred --H---HHHHCCCEEEECCH
Confidence 2 23356788999985
No 320
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=97.26 E-value=0.003 Score=53.31 Aligned_cols=109 Identities=16% Similarity=0.145 Sum_probs=78.0
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchh-HHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHhhcc
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSK-CDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~~~~ 77 (226)
||.|.|. |.+|..+-+++...|++ .+|..||.+ .+++ .|.....|..++.+. .|++++++|. ..+.+++
T Consensus 8 ~~~~~g~~~~~~~~~~~~~~~~g~~-~v~~V~p~~~~~~v--~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l--- 80 (286)
T TIGR01019 8 KVIVQGITGSQGSFHTEQMLAYGTN-IVGGVTPGKGGTTV--LGLPVFDSVKEAVEETGANASVIFVPA-PFAADAI--- 80 (286)
T ss_pred cEEEecCCcHHHHHHHHHHHhCCCC-EEEEECCCCCccee--cCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHH---
Confidence 6888886 99999999999999998 677777763 1121 488889999999886 7999999987 5666666
Q ss_pred cccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 78 GGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
++..+. .-...+|-++-......+++.+.++++|++++--
T Consensus 81 ~e~~~~-Gvk~avIis~Gf~e~~~~~l~~~a~~~girilGP 120 (286)
T TIGR01019 81 FEAIDA-GIELIVCITEGIPVHDMLKVKRYMEESGTRLIGP 120 (286)
T ss_pred HHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECC
Confidence 333331 1223444444444445678889999988877644
No 321
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=97.24 E-value=0.002 Score=55.41 Aligned_cols=65 Identities=15% Similarity=0.240 Sum_probs=47.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCc--hhHHH----HHHC------CCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDE----LVAH------GATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~----l~~~------g~~~~~s~~~~~~~advv 60 (226)
+||+|||+ |.+|..+|..|...+. ++.++|+++ ++++. +... +..+..+..+.+++||+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV 83 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA 83 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999998874 799999954 22221 2211 123334566788999999
Q ss_pred EEecC
Q 027255 61 IGMLA 65 (226)
Q Consensus 61 i~~~p 65 (226)
+++.-
T Consensus 84 VitAG 88 (323)
T TIGR01759 84 LLVGA 88 (323)
T ss_pred EEeCC
Confidence 98853
No 322
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.24 E-value=0.0035 Score=53.87 Aligned_cols=96 Identities=20% Similarity=0.192 Sum_probs=72.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVL 81 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~ 81 (226)
++-|.|.|..|+.+|.++...|.+|.|+..+|=++-+..=.|.++. ..+++++.+|++|+++-+-..++. +-+
T Consensus 211 ~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkdVi~~------eh~ 283 (420)
T COG0499 211 NVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKDVIRK------EHF 283 (420)
T ss_pred eEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcCccCH------HHH
Confidence 5678899999999999999999999999999887655555687765 478899999999999865332221 123
Q ss_pred cccCCCcEEEecCC----CCHHHHHHH
Q 027255 82 EQICPGKGYIDMST----VDHETSIKI 104 (226)
Q Consensus 82 ~~l~~g~ivvd~st----~~~~~~~~l 104 (226)
..++.|.++.+..- +.+...+++
T Consensus 284 ~~MkDgaIl~N~GHFd~EI~~~~L~~~ 310 (420)
T COG0499 284 EKMKDGAILANAGHFDVEIDVAGLEEL 310 (420)
T ss_pred HhccCCeEEecccccceeccHHHHHHh
Confidence 55778889988874 344444444
No 323
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.24 E-value=0.0016 Score=54.70 Aligned_cols=74 Identities=19% Similarity=0.294 Sum_probs=59.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.++|..|++++... .++.+..++||+|++++..+..+..
T Consensus 160 k~vvViGrS~iVGkPla~lL~~~~atVt~chs~T--------------~~l~~~~~~ADIvIsAvGk~~~i~~------- 218 (284)
T PRK14177 160 KNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT--------------QNLPSIVRQADIIVGAVGKPEFIKA------- 218 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEeCCCcCccCH-------
Confidence 36889987 6789999999999999999997432 3567788999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.++..
T Consensus 219 --~~ik~gavVIDvGin~ 234 (284)
T PRK14177 219 --DWISEGAVLLDAGYNP 234 (284)
T ss_pred --HHcCCCCEEEEecCcc
Confidence 4567999999998754
No 324
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=97.24 E-value=0.002 Score=57.53 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=75.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-HH---H-HH-HCCCcccC-CHHHHhhhCCeEEEec--C-CHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-CD---E-LV-AHGATVGG-SPAEVIKKCTITIGML--A-DPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~~---~-l~-~~g~~~~~-s~~~~~~~advvi~~~--p-~~~~~~ 71 (226)
||.|||+|..|.++|+.|.+.|++|+++|..+.. .. . +. ..|+.+.. ...+.++++|+|+..- | +.+.+.
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~ 80 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ 80 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence 5899999999999999999999999999976542 11 1 22 24765532 1234557899887753 2 223333
Q ss_pred HHhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 72 SVVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 72 ~v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
.... | ..+++..+.+.++|.-+.| ....++.-++..+...|..+.-+.-.|.|
T Consensus 81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 2211 1 1122222223345544444 67777788888888888765555455555
No 325
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.22 E-value=0.0018 Score=54.45 Aligned_cols=74 Identities=22% Similarity=0.219 Sum_probs=58.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.++|..|.++|..|++++... .++.+.+++||+||+++..+..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~~~~i~~------- 216 (284)
T PRK14170 158 KRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT--------------KDLPQVAKEADILVVATGLAKFVKK------- 216 (284)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 36889997 5689999999999999999986432 3577888999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.++||.++..
T Consensus 217 --~~vk~GavVIDvGin~ 232 (284)
T PRK14170 217 --DYIKPGAIVIDVGMDR 232 (284)
T ss_pred --HHcCCCCEEEEccCcc
Confidence 3467999999998764
No 326
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.22 E-value=0.0018 Score=54.50 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHh--CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR--NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDK 77 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~--~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~ 77 (226)
+++.|||- ...|.+++..|.+ ++..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~--------------T~~l~~~~k~ADIvV~AvGkp~~i~~----- 219 (284)
T PRK14193 159 AHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTG--------------TRDLAAHTRRADIIVAAAGVAHLVTA----- 219 (284)
T ss_pred CEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCC--------------CCCHHHHHHhCCEEEEecCCcCccCH-----
Confidence 36889987 6789999999998 68899998753 24678889999999999988653321
Q ss_pred cccccccCCCcEEEecCCCC
Q 027255 78 GGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 78 ~~l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.++||.+...
T Consensus 220 ----~~ik~GavVIDvGin~ 235 (284)
T PRK14193 220 ----DMVKPGAAVLDVGVSR 235 (284)
T ss_pred ----HHcCCCCEEEEccccc
Confidence 4577999999998754
No 327
>PRK05442 malate dehydrogenase; Provisional
Probab=97.21 E-value=0.001 Score=57.22 Aligned_cols=65 Identities=15% Similarity=0.272 Sum_probs=46.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCch--hHH----HHHHC------CCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLS--KCD----ELVAH------GATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~--~~~----~l~~~------g~~~~~s~~~~~~~advv 60 (226)
+||+|||+ |.+|..+|..|...+. ++.++|+++. +++ .+... ...+..+..+.+++||+|
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV 84 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA 84 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence 48999998 9999999999987663 7999998543 222 12211 234445666888999999
Q ss_pred EEecC
Q 027255 61 IGMLA 65 (226)
Q Consensus 61 i~~~p 65 (226)
+++.-
T Consensus 85 VitaG 89 (326)
T PRK05442 85 LLVGA 89 (326)
T ss_pred EEeCC
Confidence 98753
No 328
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0018 Score=54.31 Aligned_cols=74 Identities=28% Similarity=0.323 Sum_probs=58.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.++|..|++++.. +.++.+.+++||+||+++..+..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~AtVt~chs~--------------T~~l~~~~~~ADIvIsAvGkp~~i~~------- 217 (278)
T PRK14172 159 KEVVVIGRSNIVGKPVAQLLLNENATVTICHSK--------------TKNLKEVCKKADILVVAIGRPKFIDE------- 217 (278)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccCH-------
Confidence 36889987 578999999999999999999753 23577888999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 218 --~~ik~gavVIDvGin~ 233 (278)
T PRK14172 218 --EYVKEGAIVIDVGTSS 233 (278)
T ss_pred --HHcCCCcEEEEeeccc
Confidence 3467999999987643
No 329
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.21 E-value=0.0018 Score=54.75 Aligned_cols=74 Identities=19% Similarity=0.272 Sum_probs=58.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.++|..|++++... .++.+.+++||+||+++..+..+..
T Consensus 159 k~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~------- 217 (297)
T PRK14186 159 KKAVVVGRSILVGKPLALMLLAANATVTIAHSRT--------------QDLASITREADILVAAAGRPNLIGA------- 217 (297)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 36889987 5689999999999999999986432 3567888999999999988653321
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
..+++|.+|||.++..
T Consensus 218 --~~ik~gavVIDvGin~ 233 (297)
T PRK14186 218 --EMVKPGAVVVDVGIHR 233 (297)
T ss_pred --HHcCCCCEEEEecccc
Confidence 4567999999988654
No 330
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=97.20 E-value=0.00085 Score=58.08 Aligned_cols=88 Identities=18% Similarity=0.245 Sum_probs=56.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHh-CCCe---EEEEc--CCchhHHHHHHCCCccc-CCHHHHhhhCCeEEEecCCHHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR-NGFK---VTVWN--RTLSKCDELVAHGATVG-GSPAEVIKKCTITIGMLADPAAALS 72 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~-~G~~---V~~~d--r~~~~~~~l~~~g~~~~-~s~~~~~~~advvi~~~p~~~~~~~ 72 (226)
|||+|||+ |..|..|.+.|.+ ..++ +..+. ++..+.-.+......+. .++.+ .++.|++|+++|.. ..++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~~-~s~~ 83 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGGE-VSRQ 83 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCChH-HHHH
Confidence 58999998 9999999999995 5666 54443 33222222222222222 23333 47899999999885 4545
Q ss_pred HhhcccccccccCCCcEEEecCCC
Q 027255 73 VVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
+. . ...+.|..|||.|+.
T Consensus 84 ~~---~---~~~~~G~~VID~Ss~ 101 (347)
T PRK06728 84 FV---N---QAVSSGAIVIDNTSE 101 (347)
T ss_pred HH---H---HHHHCCCEEEECchh
Confidence 54 2 223578999999853
No 331
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=97.20 E-value=0.00023 Score=50.04 Aligned_cols=71 Identities=30% Similarity=0.348 Sum_probs=53.1
Q ss_pred eEEEEecChhHHHHHHHHH-hCCCe-EEEEcCCchhHHHHHHCCCcccCCHHHHhhh--CCeEEEecCCHHHHHHHh
Q 027255 2 EVGFLGLGIMGKAISMNLL-RNGFK-VTVWNRTLSKCDELVAHGATVGGSPAEVIKK--CTITIGMLADPAAALSVV 74 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~-~~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~--advvi~~~p~~~~~~~v~ 74 (226)
+|.++|+|..|..++.++. ..|+. +.++|.++++..+-. .|+.+..+.+++.+. .|+.++++|. ..++++.
T Consensus 5 ~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i-~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~ 79 (96)
T PF02629_consen 5 NVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEI-GGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVA 79 (96)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEE-TTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHH
T ss_pred eEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEE-CCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHH
Confidence 6899999999999986554 45776 557899998754211 267777789998887 9999999988 4455555
No 332
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=97.20 E-value=0.0018 Score=54.75 Aligned_cols=74 Identities=24% Similarity=0.341 Sum_probs=58.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.++|..|++++.. +.++.+.+++||+|++++..+..+.
T Consensus 168 k~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~~i~-------- 225 (299)
T PLN02516 168 KKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAMMIK-------- 225 (299)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcCccC--------
Confidence 36889997 568999999999999999999753 2457788999999999997753222
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
.+.+++|.+|||.++..
T Consensus 226 -~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 226 -GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred -HHHcCCCCEEEEeeccc
Confidence 14577999999988654
No 333
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=97.20 E-value=0.0017 Score=58.05 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=49.8
Q ss_pred eEEEEec-ChhHHHHHHHHHhC-------CC--eEEEEcCCchhHHHHH----HC------CCcccCCHHHHhhhCCeEE
Q 027255 2 EVGFLGL-GIMGKAISMNLLRN-------GF--KVTVWNRTLSKCDELV----AH------GATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~-------G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~~~~~~advvi 61 (226)
||+|||+ |.+|..+|-.|+.. +. ++.++|++.++++... .. .+.+..+..+.+++||+||
T Consensus 102 KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiVV 181 (444)
T PLN00112 102 NVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWAL 181 (444)
T ss_pred EEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEEE
Confidence 7999999 99999999999987 64 7889999998765422 11 2333456668889999999
Q ss_pred EecC
Q 027255 62 GMLA 65 (226)
Q Consensus 62 ~~~p 65 (226)
++.-
T Consensus 182 itAG 185 (444)
T PLN00112 182 LIGA 185 (444)
T ss_pred ECCC
Confidence 9863
No 334
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.19 E-value=0.0019 Score=54.20 Aligned_cols=74 Identities=16% Similarity=0.185 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.++|..|.+.+..|++++... .++.+..++||+||+++..+..+..
T Consensus 158 k~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~------- 216 (282)
T PRK14166 158 KDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT--------------KDLSLYTRQADLIIVAAGCVNLLRS------- 216 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCccCH-------
Confidence 36889987 5689999999999999999987542 3577888999999999988654332
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
..+++|.++||.+...
T Consensus 217 --~~vk~GavVIDvGin~ 232 (282)
T PRK14166 217 --DMVKEGVIVVDVGINR 232 (282)
T ss_pred --HHcCCCCEEEEecccc
Confidence 3467999999988653
No 335
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=97.16 E-value=0.0026 Score=55.45 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=65.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|+.++++|+..|. +++++|.+.=....+..+ |-..+....+-++ +.++-+...+..-..
T Consensus 30 ~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~~i~~ 109 (355)
T PRK05597 30 KVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVRRLTW 109 (355)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEeecCH
Confidence 79999999999999999999996 688888765333333222 2111212222221 245544444321111
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
++.. +.+..-.+|||++.. +..-..+.+.+.+.++.++.+.+.|.
T Consensus 110 ~~~~-------~~~~~~DvVvd~~d~-~~~r~~~n~~c~~~~ip~v~~~~~g~ 154 (355)
T PRK05597 110 SNAL-------DELRDADVILDGSDN-FDTRHLASWAAARLGIPHVWASILGF 154 (355)
T ss_pred HHHH-------HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 1111 122234577777654 34444566677777887777766654
No 336
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.16 E-value=0.0019 Score=54.32 Aligned_cols=74 Identities=24% Similarity=0.279 Sum_probs=58.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.++|..|.++|..|++++... .++.+.+++||+||.++..+..+.
T Consensus 159 k~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t--------------~~l~~~~~~ADIvI~AvG~p~~i~-------- 216 (284)
T PRK14190 159 KHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT--------------KNLAELTKQADILIVAVGKPKLIT-------- 216 (284)
T ss_pred CEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCC--------
Confidence 36889987 6789999999999999999986432 357788999999999997765322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
.+.+++|.+|||.+...
T Consensus 217 -~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 217 -ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred -HHHcCCCCEEEEeeccc
Confidence 13467999999988654
No 337
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.15 E-value=0.0016 Score=56.08 Aligned_cols=64 Identities=13% Similarity=0.164 Sum_probs=46.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCC-------CeEEEEcCCch--hHHH----HHH------CCCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNG-------FKVTVWNRTLS--KCDE----LVA------HGATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G-------~~V~~~dr~~~--~~~~----l~~------~g~~~~~s~~~~~~~advv 60 (226)
.||+|+|+ |.+|+.++..|...+ .+|.++|+++. +++. +.. ..+....+..+.+++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 48999999 999999999998854 48999999653 2221 111 0122345667888999999
Q ss_pred EEec
Q 027255 61 IGML 64 (226)
Q Consensus 61 i~~~ 64 (226)
|.+.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
No 338
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=97.14 E-value=0.0021 Score=54.72 Aligned_cols=64 Identities=22% Similarity=0.338 Sum_probs=46.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCC--CeEEEEcCCchhHHH----HHHC------CCcccC-CHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG--FKVTVWNRTLSKCDE----LVAH------GATVGG-SPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~~----l~~~------g~~~~~-s~~~~~~~advvi~~~ 64 (226)
|||+|||.|.+|+.+|-.|...+ .++.++|+++++.+- +... ...+.. .--+.++++|+|+++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitA 77 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITA 77 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeC
Confidence 79999999999999999998765 479999999665432 2211 122222 2246678999999987
No 339
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.13 E-value=0.0023 Score=53.72 Aligned_cols=74 Identities=18% Similarity=0.254 Sum_probs=58.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.++|..|.++|..|++++... .++.+..++||+||+++..+..+..
T Consensus 157 k~vvViGrS~iVGkPla~lL~~~~atVtichs~T--------------~~l~~~~~~ADIvI~AvG~p~~i~~------- 215 (282)
T PRK14169 157 KRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT--------------RNLKQLTKEADILVVAVGVPHFIGA------- 215 (282)
T ss_pred CEEEEECCCccchHHHHHHHHHCCCEEEEECCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 36889987 5689999999999999999986432 2567888999999999988664322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 216 --~~vk~GavVIDvGin~ 231 (282)
T PRK14169 216 --DAVKPGAVVIDVGISR 231 (282)
T ss_pred --HHcCCCcEEEEeeccc
Confidence 3467999999988654
No 340
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.13 E-value=0.0012 Score=56.84 Aligned_cols=64 Identities=14% Similarity=0.223 Sum_probs=47.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCc--hhHHHH----HHC------CCcccCCHHHHhhhCCeE
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTL--SKCDEL----VAH------GATVGGSPAEVIKKCTIT 60 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~--~~~~~l----~~~------g~~~~~s~~~~~~~advv 60 (226)
.||+|||+ |.+|+.++..|+..|. ++.++|+++ ++.+.. ... +..+..+..+.+++||+|
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV 80 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA 80 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence 38999999 9999999999997652 599999987 543221 111 223335677889999999
Q ss_pred EEec
Q 027255 61 IGML 64 (226)
Q Consensus 61 i~~~ 64 (226)
+++.
T Consensus 81 VitA 84 (323)
T cd00704 81 ILVG 84 (323)
T ss_pred EEeC
Confidence 9875
No 341
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=97.12 E-value=0.0031 Score=54.86 Aligned_cols=88 Identities=22% Similarity=0.250 Sum_probs=60.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHH-CCCcccCCHH---------HHh--hhCCeEEEecCCHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVA-HGATVGGSPA---------EVI--KKCTITIGMLADPA 68 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~-~g~~~~~s~~---------~~~--~~advvi~~~p~~~ 68 (226)
+|.|+|+|.+|...+..+...|. +|++.|+++++++..++ .+.....+.. +.. ..+|++|.|+....
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~ 250 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPP 250 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHH
Confidence 58899999999988777777784 68888999999988877 4544332221 111 24888998887665
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
.+.+.+ ..++++..++..+..
T Consensus 251 ~~~~ai-------~~~r~gG~v~~vGv~ 271 (350)
T COG1063 251 ALDQAL-------EALRPGGTVVVVGVY 271 (350)
T ss_pred HHHHHH-------HHhcCCCEEEEEecc
Confidence 555554 555666666655554
No 342
>PRK09414 glutamate dehydrogenase; Provisional
Probab=97.11 E-value=0.0024 Score=57.09 Aligned_cols=109 Identities=15% Similarity=0.078 Sum_probs=68.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEE-c----------CCchhHHHHHHC------------CCcccCCHHHHhh-h
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW-N----------RTLSKCDELVAH------------GATVGGSPAEVIK-K 56 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~-d----------r~~~~~~~l~~~------------g~~~~~s~~~~~~-~ 56 (226)
++|.|.|.|++|+..|+.|.+.|.+|+.+ | .+.+.+.+..+. ++... +.+++.. +
T Consensus 233 ~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i-~~~~i~~~d 311 (445)
T PRK09414 233 KRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYL-EGGSPWSVP 311 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeec-CCccccccC
Confidence 47999999999999999999999998876 7 666655444432 11111 2333333 6
Q ss_pred CCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255 57 CTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (226)
Q Consensus 57 advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld 117 (226)
|||++-|...+....+.. ..+.+ .+=++|+...+. |. +.+..+.+.++|+.|+.
T Consensus 312 ~DVliPaAl~n~It~~~a---~~i~~--~~akiIvEgAN~-p~-t~~A~~~L~~rGI~~vP 365 (445)
T PRK09414 312 CDIALPCATQNELDEEDA---KTLIA--NGVKAVAEGANM-PS-TPEAIEVFLEAGVLFAP 365 (445)
T ss_pred CcEEEecCCcCcCCHHHH---HHHHH--cCCeEEEcCCCC-CC-CHHHHHHHHHCCcEEEC
Confidence 999999886644333333 22221 122456655554 33 44456778889988863
No 343
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.11 E-value=0.0023 Score=53.77 Aligned_cols=74 Identities=22% Similarity=0.220 Sum_probs=58.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.++|..|++++... .++.+..++||+||+++..+..+..
T Consensus 159 k~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T--------------~dl~~~~k~ADIvIsAvGkp~~i~~------- 217 (282)
T PRK14180 159 AYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT--------------TDLKSHTTKADILIVAVGKPNFITA------- 217 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHhhhcCEEEEccCCcCcCCH-------
Confidence 36889987 5689999999999999999987532 2566778999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
..+++|.+|||.++..
T Consensus 218 --~~vk~gavVIDvGin~ 233 (282)
T PRK14180 218 --DMVKEGAVVIDVGINH 233 (282)
T ss_pred --HHcCCCcEEEEecccc
Confidence 4467999999988643
No 344
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=97.11 E-value=0.0045 Score=55.95 Aligned_cols=108 Identities=10% Similarity=0.019 Sum_probs=71.3
Q ss_pred CeEEEEec----------ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----------------------CCcccC
Q 027255 1 MEVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----------------------GATVGG 48 (226)
Q Consensus 1 m~IgvIG~----------G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----------------------g~~~~~ 48 (226)
.||+|+|+ .+-...+++.|.+.|.+|.+||+--...+.-... ++..+.
T Consensus 325 ~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (473)
T PLN02353 325 KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVW 404 (473)
T ss_pred CEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeC
Confidence 37899998 4577889999999999999999864332211011 235567
Q ss_pred CHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255 49 SPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (226)
Q Consensus 49 s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld 117 (226)
++.++++++|+|++++..++ .+..- ...+.+.+.+..+|+|+-..... +.+++.|+.|+.
T Consensus 405 ~~~~a~~~aD~vvi~t~~~e-f~~l~--~~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 405 DAYEATKGAHGICILTEWDE-FKTLD--YQKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred CHHHHhcCCCEEEECCCChH-hcccC--HHHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 77889999999999998754 43321 02333445455589998776421 222345887765
No 345
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=97.10 E-value=0.0056 Score=51.24 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=37.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCCc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGAT 45 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~~ 45 (226)
+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+.
T Consensus 123 ~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 123 RVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 588999999999998888888986 88889999988877777764
No 346
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.10 E-value=0.0068 Score=54.85 Aligned_cols=114 Identities=20% Similarity=0.116 Sum_probs=69.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-----hHHHHHHCCCcccCC-HHHHhhhCCeEEEec---CCHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-----KCDELVAHGATVGGS-PAEVIKKCTITIGML---ADPAAALS 72 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s-~~~~~~~advvi~~~---p~~~~~~~ 72 (226)
+|.|||.|..|..+|..|.+.|++|+++|+++. ..+.+.+.|+..... ..+....+|+||++. |+...+..
T Consensus 18 ~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~~~~~~~~ 97 (480)
T PRK01438 18 RVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRPDAPLLAA 97 (480)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCCCCHHHHH
Confidence 699999999999999999999999999996643 224466668765321 111345689988875 33333222
Q ss_pred Hhh------cccccc-cccC---CCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 73 VVF------DKGGVL-EQIC---PGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 73 v~~------~~~~l~-~~l~---~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
.-. ++.+++ ..+. +..+|.-+.| ....++.-++..+...|...
T Consensus 98 a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~~g~~~ 151 (480)
T PRK01438 98 AADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRAAGLRA 151 (480)
T ss_pred HHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHHcCCCe
Confidence 211 111222 1222 2234544444 56677777788887766543
No 347
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.10 E-value=0.0025 Score=53.77 Aligned_cols=74 Identities=22% Similarity=0.221 Sum_probs=58.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.+++..|++++... .++.+.+++||+||+++..+..+..
T Consensus 161 k~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~~------- 219 (294)
T PRK14187 161 SDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT--------------RDLADYCSKADILVAAVGIPNFVKY------- 219 (294)
T ss_pred CEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 36889987 5689999999999999999987532 3567888999999999988664332
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 220 --~~ik~gaiVIDVGin~ 235 (294)
T PRK14187 220 --SWIKKGAIVIDVGINS 235 (294)
T ss_pred --HHcCCCCEEEEecccc
Confidence 3467999999987653
No 348
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=97.08 E-value=0.0066 Score=55.83 Aligned_cols=64 Identities=20% Similarity=0.309 Sum_probs=46.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH---------CC------Ccc----cC---CHHHHhhhCC
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA---------HG------ATV----GG---SPAEVIKKCT 58 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~---------~g------~~~----~~---s~~~~~~~ad 58 (226)
+|.|.|. |.+|+.+++.|++.|++|++++|+.++.+.+.+ .| +.+ .. +..+++.++|
T Consensus 82 vVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiD 161 (576)
T PLN03209 82 LAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNAS 161 (576)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCC
Confidence 4778876 999999999999999999999999988766532 11 111 12 2334566789
Q ss_pred eEEEecC
Q 027255 59 ITIGMLA 65 (226)
Q Consensus 59 vvi~~~p 65 (226)
+||.+..
T Consensus 162 iVVn~AG 168 (576)
T PLN03209 162 VVICCIG 168 (576)
T ss_pred EEEEccc
Confidence 9988863
No 349
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=97.08 E-value=0.00092 Score=57.70 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=54.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC---eEEEEcC--CchhHHHHHHCCCcccCCHHHH-hhhCCeEEEecCCHHHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF---KVTVWNR--TLSKCDELVAHGATVGGSPAEV-IKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~---~V~~~dr--~~~~~~~l~~~g~~~~~s~~~~-~~~advvi~~~p~~~~~~~v 73 (226)
|+|+|||+ |..|..+.+.|.++.| ++..... +..+.-.+......+. ++++. .+++|++|+|+|.. ...++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~-~~~~~~~~~~Dvvf~a~p~~-~s~~~ 82 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQ-DAAEFDWSQAQLAFFVAGRE-ASAAY 82 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEE-eCchhhccCCCEEEECCCHH-HHHHH
Confidence 58999998 9999999999998554 4554432 2222111221122222 34443 26899999999885 44444
Q ss_pred hhcccccccccCCCcEEEecCC
Q 027255 74 VFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 74 ~~~~~~l~~~l~~g~ivvd~st 95 (226)
. .. ..+.|..|||+|.
T Consensus 83 ~---~~---~~~~g~~VIDlS~ 98 (336)
T PRK08040 83 A---EE---ATNAGCLVIDSSG 98 (336)
T ss_pred H---HH---HHHCCCEEEECCh
Confidence 4 22 2347899999995
No 350
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=97.07 E-value=0.0017 Score=55.52 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=46.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchh--HHHHHHC--CCccc-----CCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSK--CDELVAH--GATVG-----GSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~--~~~l~~~--g~~~~-----~s~~~~~~~advvi~~~p 65 (226)
|||+|||+ |.+|..+|..|+..+. ++.++|++..+ +..+... ..... +++.+.++++|+|+++.-
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG 77 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAG 77 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCC
Confidence 89999999 9999999999998884 79999987211 1122222 11222 223678899999999864
No 351
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=97.06 E-value=0.0045 Score=53.59 Aligned_cols=45 Identities=36% Similarity=0.397 Sum_probs=37.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcC---CchhHHHHHHCCCcc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNR---TLSKCDELVAHGATV 46 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr---~~~~~~~l~~~g~~~ 46 (226)
+|.|+|+|.+|...++.+...|.+|++++| ++++.+.+.+.|+..
T Consensus 175 ~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 175 RALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 588999999999999888888999999998 677777777777653
No 352
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.04 E-value=0.0031 Score=53.07 Aligned_cols=74 Identities=23% Similarity=0.336 Sum_probs=58.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.+.+..|++++... .++.+..++||+||+++..+..+..
T Consensus 160 K~vvViGrS~iVGkPla~lL~~~~ATVtichs~T--------------~~L~~~~~~ADIvV~AvGkp~~i~~------- 218 (288)
T PRK14171 160 KNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT--------------HNLSSITSKADIVVAAIGSPLKLTA------- 218 (288)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCCCccCH-------
Confidence 36889987 5689999999999999999987421 3577888999999999987653322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
..+++|.+|||.+...
T Consensus 219 --~~vk~GavVIDvGin~ 234 (288)
T PRK14171 219 --EYFNPESIVIDVGINR 234 (288)
T ss_pred --HHcCCCCEEEEeeccc
Confidence 4467999999988653
No 353
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=97.04 E-value=0.002 Score=56.03 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=55.0
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCC-eEEEEcCCchhHHH-HHH---C-----------CCccc-CCHHHHhhhCCeEEE
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGF-KVTVWNRTLSKCDE-LVA---H-----------GATVG-GSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~-l~~---~-----------g~~~~-~s~~~~~~~advvi~ 62 (226)
+||+|+| .|.+|..+.+.|.++.. ++..+.++++...+ +.. . ...+. .+++ .+.++|+||.
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPE-AVDDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHH-HhcCCCEEEE
Confidence 4899998 79999999999997653 77777555443221 110 0 11121 2333 3478999999
Q ss_pred ecCCHHHHHHHhhcccccccccCCCcEEEecCC
Q 027255 63 MLADPAAALSVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 63 ~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
|+|... ..++. +. ....|..+||.|.
T Consensus 83 a~p~~~-s~~~~---~~---~~~~G~~vIDls~ 108 (349)
T PRK08664 83 ALPSDV-AGEVE---EE---FAKAGKPVFSNAS 108 (349)
T ss_pred eCChhH-HHHHH---HH---HHHCCCEEEECCc
Confidence 999853 33443 22 2246788899885
No 354
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=97.03 E-value=0.0064 Score=52.39 Aligned_cols=44 Identities=18% Similarity=0.135 Sum_probs=38.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGAT 45 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~ 45 (226)
+|.|+|+|.+|...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 172 ~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 172 RVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 68899999999988888888897 588999999999888777764
No 355
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=97.03 E-value=0.0032 Score=55.36 Aligned_cols=64 Identities=16% Similarity=0.273 Sum_probs=46.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCC-------eEEEE--cCCchhHHHHHH----------CCCcccCCHHHHhhhCCeEE
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVW--NRTLSKCDELVA----------HGATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~--dr~~~~~~~l~~----------~g~~~~~s~~~~~~~advvi 61 (226)
||+|||+ |.+|..+|-.|+..+. .++++ |++.++++...- ..+.+..+..+.+++||+||
T Consensus 46 KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL~d~a~~~~~~v~i~~~~y~~~kdaDIVV 125 (387)
T TIGR01757 46 NVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAMELEDSLYPLLREVSIGIDPYEVFEDADWAL 125 (387)
T ss_pred EEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHHHHHhhhhhcCceEEecCCHHHhCCCCEEE
Confidence 7999999 9999999999998763 24445 888887654221 12343456668889999999
Q ss_pred EecC
Q 027255 62 GMLA 65 (226)
Q Consensus 62 ~~~p 65 (226)
++.-
T Consensus 126 itAG 129 (387)
T TIGR01757 126 LIGA 129 (387)
T ss_pred ECCC
Confidence 9753
No 356
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=97.03 E-value=0.0041 Score=54.92 Aligned_cols=115 Identities=13% Similarity=0.140 Sum_probs=69.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|..+|.+|+..|. +++++|.+.=....+..+ |-..+....+.+. +.++-+.+.+..-..
T Consensus 44 ~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~ 123 (392)
T PRK07878 44 RVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLHEFRLDP 123 (392)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEEeccCCh
Confidence 69999999999999999999997 688998765443334332 2111111222222 244544444321111
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
.+. .+.+..-.+|||++. .+.....+.+.+.+.++.|+.+.+.|-.
T Consensus 124 ~~~-------~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p~v~~~~~g~~ 169 (392)
T PRK07878 124 SNA-------VELFSQYDLILDGTD-NFATRYLVNDAAVLAGKPYVWGSIYRFE 169 (392)
T ss_pred hHH-------HHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEEeccCE
Confidence 111 112233468888765 4566666888888889989888776643
No 357
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.02 E-value=0.013 Score=53.31 Aligned_cols=114 Identities=17% Similarity=0.089 Sum_probs=69.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCch--hHHHHHHC--CCcccC--CHHHHhhhCCeEEEe--cCCH-----H
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS--KCDELVAH--GATVGG--SPAEVIKKCTITIGM--LADP-----A 68 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~--~~~~l~~~--g~~~~~--s~~~~~~~advvi~~--~p~~-----~ 68 (226)
+|.|+|+|..|.++|+.|.+.|++|+++|.... ..+.+.+. |+.... ...+.+.++|+||.. +|.. +
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~I~~~~~~~~~ 88 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPGLSPLEAALAP 88 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCCCCCcccccCH
Confidence 699999999999999999999999999997543 33445555 444321 234556689988886 3332 2
Q ss_pred HHHHHhh-c-----cccc-ccccC-------CCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 69 AALSVVF-D-----KGGV-LEQIC-------PGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 69 ~~~~v~~-~-----~~~l-~~~l~-------~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
.+...-. + ..++ ...+. ...+|--+.| ....++.-++..+...|...
T Consensus 89 ~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g~~~ 150 (498)
T PRK02006 89 LVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAGKKV 150 (498)
T ss_pred HHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCE
Confidence 2222110 0 0011 11111 1144544444 67777778888888877653
No 358
>PLN00106 malate dehydrogenase
Probab=97.01 E-value=0.0037 Score=53.72 Aligned_cols=65 Identities=14% Similarity=0.227 Sum_probs=46.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhH--HHHHHC----CCc---ccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKC--DELVAH----GAT---VGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~--~~l~~~----g~~---~~~s~~~~~~~advvi~~~p 65 (226)
.||+|||+ |.+|..+|..|+.++. ++.++|+++... ..+... .+. -.+++.++++++|+||++.-
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 37999999 9999999999997664 799999977221 122221 111 12345788999999999863
No 359
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.99 E-value=0.0038 Score=52.38 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=57.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.+++..|.+++..|++++... .++.+..++||+|++++..+..+..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~AtVtichs~T--------------~nl~~~~~~ADIvI~AvGk~~~i~~------- 216 (282)
T PRK14182 158 KRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT--------------ADLAGEVGRADILVAAIGKAELVKG------- 216 (282)
T ss_pred CEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEecCCcCccCH-------
Confidence 36889987 5689999999999999999986532 3567788999999999987543321
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.++||.+...
T Consensus 217 --~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 217 --AWVKEGAVVIDVGMNR 232 (282)
T ss_pred --HHcCCCCEEEEeecee
Confidence 4467999999988654
No 360
>PRK14851 hypothetical protein; Provisional
Probab=96.97 E-value=0.0052 Score=57.85 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=70.3
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|+|||+|..|+.++.+|+..|. +++++|.+.=....+..+ |...+.-..+.+. +.++-|.+.+..-.-
T Consensus 45 ~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~~~~i~~ 124 (679)
T PRK14851 45 KVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPFPAGINA 124 (679)
T ss_pred eEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEEecCCCh
Confidence 79999999999999999999996 588887654333333332 2222222222222 245555554331111
Q ss_pred HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
++ + . ..+..-.+|||++.. .......+.+.+.+.++.++.+.+.|.
T Consensus 125 ~n-~---~---~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~ 171 (679)
T PRK14851 125 DN-M---D---AFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGY 171 (679)
T ss_pred HH-H---H---HHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccc
Confidence 11 1 1 222344688998875 345556777788888999999877664
No 361
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=96.96 E-value=0.0023 Score=54.70 Aligned_cols=64 Identities=23% Similarity=0.215 Sum_probs=50.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHH---HHHC------------CCcccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVAH------------GATVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~---l~~~------------g~~~~~s~~~~~~~advvi~~~ 64 (226)
|+|.|-|+ |.+|+.+.+.|+.+||.|+..-|+++.-+. +.+. .+....+..+++++||.||=+.
T Consensus 7 ~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 7 KKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred cEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 57889987 999999999999999999999998886322 3332 1334568889999999998654
No 362
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.93 E-value=0.0065 Score=53.84 Aligned_cols=107 Identities=11% Similarity=0.127 Sum_probs=64.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHh--hhCCeEEEe--cC-CHHHH---HH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVI--KKCTITIGM--LA-DPAAA---LS 72 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~--~~advvi~~--~p-~~~~~---~~ 72 (226)
|+|.|+|+|.-|.++|+.|. .|++|+++|..+.... +.+.|+... . .+.. +++|+|+.. +| +.+.+ ++
T Consensus 1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~-~~~~gi~~~-~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~ 76 (401)
T PRK03815 1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESH-KDEEGNLLL-P-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKN 76 (401)
T ss_pred CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccc-hhhcCCEEe-c-HHHcCcCCCCEEEECCCCCCCCHHHHHHHH
Confidence 89999999999999999999 9999999996543221 223366553 2 2223 468877765 22 22222 22
Q ss_pred HhhcccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCC
Q 027255 73 VVFDKGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGG 113 (226)
Q Consensus 73 v~~~~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~ 113 (226)
++ ++-+++..+. ..+|--+ |.....++.-++..+...|.
T Consensus 77 i~-~~~e~~~~~~-~~~i~ITGT~GKTTTt~ml~~iL~~~g~ 116 (401)
T PRK03815 77 LI-SEYDYFYDVM-PFSIWISGTNGKTTTTQMTTHLLEDFGA 116 (401)
T ss_pred Hh-hHHHHHHHhc-CCEEEEECCCcHHHHHHHHHHHHHHCCC
Confidence 22 1112222222 2344444 44566777777778877663
No 363
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.93 E-value=0.0047 Score=53.57 Aligned_cols=121 Identities=14% Similarity=0.180 Sum_probs=70.6
Q ss_pred CeEEEEecChhHHHHHHHHHhC--------CCeEE---EEcCCchhHH-------HHHHCC--Cc-----ccCCHHHHh-
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--------GFKVT---VWNRTLSKCD-------ELVAHG--AT-----VGGSPAEVI- 54 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--------G~~V~---~~dr~~~~~~-------~l~~~g--~~-----~~~s~~~~~- 54 (226)
++|+++|+|.+|+.+++.|.++ |.++. +.+++..... .+.+.+ .. ....+.+..
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHLLRYGGGSCAIEKYIEHHPEERAT 82 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhhhhccccccchhhhhccChHHHhc
Confidence 4799999999999999998653 44433 3465543322 111110 00 111222222
Q ss_pred h--hCCeEEEecCCH----HHHHHHhhcccccccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcE-EecCCCCChHh
Q 027255 55 K--KCTITIGMLADP----AAALSVVFDKGGVLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHF-LEAPVSGSKQP 126 (226)
Q Consensus 55 ~--~advvi~~~p~~----~~~~~v~~~~~~l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~-ld~pv~g~~~~ 126 (226)
. ..|||+-|+|++ +..... +...++.|+.||..+... .....++.+..+++|+.| .++.|.|+-|-
T Consensus 83 ~~~~~dVvVe~T~s~~~~~e~a~~~------~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~yEasVggGiPi 156 (346)
T PRK06813 83 DNISGTVLVESTVTNLKDGNPGKQY------IKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIRYSGATAAALPT 156 (346)
T ss_pred CCCCCCEEEECCCCccCCchHHHHH------HHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEEEeeeeeeccch
Confidence 2 469999998764 222222 235677888888877631 223366777777788875 46777777554
Q ss_pred h
Q 027255 127 A 127 (226)
Q Consensus 127 a 127 (226)
.
T Consensus 157 I 157 (346)
T PRK06813 157 L 157 (346)
T ss_pred H
Confidence 3
No 364
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=96.93 E-value=0.0026 Score=54.46 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=45.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCC--eEEEEcCCchhHH--HHHHC--CCccc----C-CHHHHhhhCCeEEEecC
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGF--KVTVWNRTLSKCD--ELVAH--GATVG----G-SPAEVIKKCTITIGMLA 65 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~--~l~~~--g~~~~----~-s~~~~~~~advvi~~~p 65 (226)
||+|||+ |.+|..+|..|+..++ ++.++|+++...+ .+... ...+. . ++.+.++++|+|+++.-
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG 76 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAG 76 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCC
Confidence 7999999 9999999999998875 7999999773211 12221 11222 1 23678899999998864
No 365
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.92 E-value=0.0046 Score=52.34 Aligned_cols=74 Identities=26% Similarity=0.275 Sum_probs=57.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||- ...|.++|..|.+. +..|++++... .++.+.+++||+||+++..+..+..
T Consensus 162 k~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T--------------~~l~~~~~~ADIvVsAvGkp~~i~~--- 224 (297)
T PRK14168 162 AEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS--------------KNLARHCQRADILIVAAGVPNLVKP--- 224 (297)
T ss_pred CEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC--------------cCHHHHHhhCCEEEEecCCcCccCH---
Confidence 36889987 67899999999987 67899886432 3577888999999999977553321
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 225 ------~~ik~gavVIDvGin~ 240 (297)
T PRK14168 225 ------EWIKPGATVIDVGVNR 240 (297)
T ss_pred ------HHcCCCCEEEecCCCc
Confidence 4467999999988653
No 366
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=96.92 E-value=0.0014 Score=55.72 Aligned_cols=65 Identities=26% Similarity=0.321 Sum_probs=49.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p 65 (226)
|+|.|+|. |.+|+.+++.|+++|++|++.+|+++....+...++.. ..+..++++.+|+||-+..
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 78999985 99999999999999999999999887654443333322 1234566778899887763
No 367
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.92 E-value=0.0042 Score=53.41 Aligned_cols=74 Identities=23% Similarity=0.313 Sum_probs=58.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ..+|.++|..|.+++..|++++... .++.+..++||+||+++..+..+..
T Consensus 215 K~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T--------------~nl~~~~~~ADIvIsAvGkp~~v~~------- 273 (345)
T PLN02897 215 KNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT--------------KDPEQITRKADIVIAAAGIPNLVRG------- 273 (345)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC--------------CCHHHHHhhCCEEEEccCCcCccCH-------
Confidence 36889987 5689999999999999999886432 3567788999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 274 --d~vk~GavVIDVGin~ 289 (345)
T PLN02897 274 --SWLKPGAVVIDVGTTP 289 (345)
T ss_pred --HHcCCCCEEEEccccc
Confidence 3467999999988753
No 368
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=96.91 E-value=0.0064 Score=50.38 Aligned_cols=110 Identities=17% Similarity=0.088 Sum_probs=63.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEE-EEc----------CCchhHHHH---HH-CC------------CcccCCHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWN----------RTLSKCDEL---VA-HG------------ATVGGSPAEV 53 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~d----------r~~~~~~~l---~~-~g------------~~~~~s~~~~ 53 (226)
++|.|.|.|++|+..|+.|.+.|.+|+ +.| .+.+.+..+ .. .+ .+.. +.+++
T Consensus 39 ~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~-~~~~~ 117 (254)
T cd05313 39 KRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF-EGKKP 117 (254)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe-CCcch
Confidence 479999999999999999999999987 555 222233221 11 11 2222 33343
Q ss_pred -hhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 54 -IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 54 -~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
...|||++-|--......+.. ..+.. .+=++|+...+. |.+. +..+.+.++|+.|+.-
T Consensus 118 ~~~~~DIliPcAl~~~I~~~na---~~i~~--~~ak~I~EgAN~-p~t~-~a~~~L~~rGI~vvPD 176 (254)
T cd05313 118 WEVPCDIAFPCATQNEVDAEDA---KLLVK--NGCKYVAEGANM-PCTA-EAIEVFRQAGVLFAPG 176 (254)
T ss_pred hcCCCcEEEeccccccCCHHHH---HHHHH--cCCEEEEeCCCC-CCCH-HHHHHHHHCCcEEECc
Confidence 346998888854322222222 11211 023455555543 3333 5667888999988744
No 369
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.90 E-value=0.0049 Score=51.89 Aligned_cols=74 Identities=23% Similarity=0.326 Sum_probs=57.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||- ...|.++|..|.++ +..|++++... .++.+.+++||+||+++..+..+..
T Consensus 154 k~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T--------------~~l~~~~~~ADIvV~AvG~p~~i~~--- 216 (287)
T PRK14181 154 RHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS--------------ENLTEILKTADIIIAAIGVPLFIKE--- 216 (287)
T ss_pred CEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH---
Confidence 36889987 56899999999988 78899887532 3577888999999999988653322
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 217 ------~~ik~GavVIDvGin~ 232 (287)
T PRK14181 217 ------EMIAEKAVIVDVGTSR 232 (287)
T ss_pred ------HHcCCCCEEEEecccc
Confidence 4567999999988654
No 370
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=96.90 E-value=0.0044 Score=53.56 Aligned_cols=74 Identities=22% Similarity=0.334 Sum_probs=58.5
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
++|.|||- ...|.++|..|.+++..|++++... .++.+.+++||+||.++..+..+..
T Consensus 232 K~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T--------------~nl~~~~r~ADIVIsAvGkp~~i~~------- 290 (364)
T PLN02616 232 KRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT--------------KNPEEITREADIIISAVGQPNMVRG------- 290 (364)
T ss_pred CEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC--------------CCHHHHHhhCCEEEEcCCCcCcCCH-------
Confidence 36888987 6789999999999999999986432 3577888999999999988654322
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 291 --d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 291 --SWIKPGAVVIDVGINP 306 (364)
T ss_pred --HHcCCCCEEEeccccc
Confidence 3467999999988653
No 371
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=96.88 E-value=0.0061 Score=53.43 Aligned_cols=113 Identities=18% Similarity=0.173 Sum_probs=64.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|..++.+|+..|. +++++|.+.=....+..+ |...+....+.+. +.++-+...+.. ..
T Consensus 43 ~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~-i~ 121 (370)
T PRK05600 43 RVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRER-LT 121 (370)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeeee-cC
Confidence 69999999999999999999996 799998774433333322 2211222222222 234444444321 11
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
.+.+ .+.+..-.+|||++.. ...-..+.+.+.+.++.++.+.+.|
T Consensus 122 ~~~~------~~~~~~~DlVid~~Dn-~~~r~~in~~~~~~~iP~v~~~~~g 166 (370)
T PRK05600 122 AENA------VELLNGVDLVLDGSDS-FATKFLVADAAEITGTPLVWGTVLR 166 (370)
T ss_pred HHHH------HHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEec
Confidence 1111 1122234577776654 4455566667777777777776554
No 372
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.86 E-value=0.0093 Score=53.61 Aligned_cols=114 Identities=17% Similarity=0.086 Sum_probs=69.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh-H----HHHHHCCCcccCC--HH-----HHhhhCCeEEEecC---C
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK-C----DELVAHGATVGGS--PA-----EVIKKCTITIGMLA---D 66 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~-~----~~l~~~g~~~~~s--~~-----~~~~~advvi~~~p---~ 66 (226)
||.|||+|..|...|+.|.+.|++|.++|+++.. . +.+...|++.... .. +...+.|.|+.... +
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~ 81 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD 81 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence 7899999999999999999999999999976542 2 2355667655321 11 35667898887432 2
Q ss_pred HHHHHHHhh-c-----ccccc-cccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 67 PAAALSVVF-D-----KGGVL-EQICPGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 67 ~~~~~~v~~-~-----~~~l~-~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
...+..... | ..++. ....+..+|--+.| ....++.-++..+...|...
T Consensus 82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~~g~~~ 138 (459)
T PRK02705 82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQAAGLNA 138 (459)
T ss_pred CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHHcCCCe
Confidence 222322211 0 00111 12223345544444 56777777888888777653
No 373
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=96.85 E-value=0.0089 Score=52.51 Aligned_cols=114 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|+.++.+|++.|. +++++|++.-....+..+ |...+....+.+. +.++-+...+..- .
T Consensus 137 ~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~-~ 215 (376)
T PRK08762 137 RVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQERV-T 215 (376)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEeccC-C
Confidence 69999999999999999999997 699999874333333322 2111222222222 2344333332210 0
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
.+.+ . +.+..-.+|||++.. +..-..+.+.+.+.++.++.+.+.|.
T Consensus 216 ~~~~---~---~~~~~~D~Vv~~~d~-~~~r~~ln~~~~~~~ip~i~~~~~g~ 261 (376)
T PRK08762 216 SDNV---E---ALLQDVDVVVDGADN-FPTRYLLNDACVKLGKPLVYGAVFRF 261 (376)
T ss_pred hHHH---H---HHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEeccC
Confidence 1111 1 122234678887765 34455678888889999999877763
No 374
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.84 E-value=0.014 Score=52.27 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=73.1
Q ss_pred CeEEEEecChhHHHHHHHHHhC--CCeEEEEcCCchh--HHHHHHCCCccc-C-CHHHHhhhCCeEEEec--C-CHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN--GFKVTVWNRTLSK--CDELVAHGATVG-G-SPAEVIKKCTITIGML--A-DPAAAL 71 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~--~~~l~~~g~~~~-~-s~~~~~~~advvi~~~--p-~~~~~~ 71 (226)
++|.|||+|..|.+.++.|.+. |++|+++|..+.. .+.+.. |+... . ...+.+.++|+|+..- | +.+.++
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~-g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~p~~~ 86 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE-DVELHSGGWNLEWLLEADLVVTNPGIALATPEIQ 86 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc-CCEEEeCCCChHHhccCCEEEECCCCCCCCHHHH
Confidence 3689999999999999999987 5899999975432 234543 76652 1 1234457899877653 2 223333
Q ss_pred HHhh-c-----ccccccccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 72 SVVF-D-----KGGVLEQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 72 ~v~~-~-----~~~l~~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
.... | +.+++..+.+.++|--+.| ....++.-++..+...|..+.-+.-.|.|
T Consensus 87 ~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gniG~~ 146 (438)
T PRK04663 87 QVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAGVKVAVGGNIGVP 146 (438)
T ss_pred HHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCCCCEEEEcccCHH
Confidence 3221 1 1122222223455555555 56667777778888777654433334444
No 375
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.84 E-value=0.031 Score=50.07 Aligned_cols=115 Identities=12% Similarity=0.034 Sum_probs=71.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--HHHHHH--CCCcccC--CHHHHhhhCCeEEEec---CCHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVA--HGATVGG--SPAEVIKKCTITIGML---ADPAAAL 71 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--~~~l~~--~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~ 71 (226)
++|.|+|.|..|...|+.|.+.|++|.++|.++.. .+++.+ .|+.... ...+...++|+||... |+.+.++
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~p~~~ 85 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQPDIE 85 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCCHHHH
Confidence 47999999999999999999999999999976543 344544 3655421 1233446789988864 2223343
Q ss_pred HHhh-c-----ccccc-cccC--CCcEEEecCC-CCHHHHHHHHHHHHhcCCcE
Q 027255 72 SVVF-D-----KGGVL-EQIC--PGKGYIDMST-VDHETSIKISRAITSKGGHF 115 (226)
Q Consensus 72 ~v~~-~-----~~~l~-~~l~--~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ 115 (226)
.... + +.+++ ..++ +..+|.-+.| ....++.-++..+...|...
T Consensus 86 ~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~ 139 (445)
T PRK04308 86 AFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKCGLDT 139 (445)
T ss_pred HHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHcCCCe
Confidence 3321 1 11121 1121 2345544444 66777777888888777653
No 376
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.83 E-value=0.0017 Score=50.92 Aligned_cols=72 Identities=19% Similarity=0.273 Sum_probs=49.2
Q ss_pred eEEEEecChhHHHHHHH-HH-hCCCeEE-EEcCCchhHHHHHHC-CCcccCCHHHHhh--hCCeEEEecCCHHHHHHHh
Q 027255 2 EVGFLGLGIMGKAISMN-LL-RNGFKVT-VWNRTLSKCDELVAH-GATVGGSPAEVIK--KCTITIGMLADPAAALSVV 74 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~-l~-~~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~~~~~--~advvi~~~p~~~~~~~v~ 74 (226)
++.+||+|++|++++.. +. ++|+++. ++|.+++++...... -+.-.+++++.++ +.|+.++|+|.. ..+++.
T Consensus 86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa~-~AQ~va 163 (211)
T COG2344 86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPAE-HAQEVA 163 (211)
T ss_pred eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHHHhcCccEEEEEccHH-HHHHHH
Confidence 68899999999999865 33 5677754 789999876543322 1222455666666 578999999974 344433
No 377
>PRK14852 hypothetical protein; Provisional
Probab=96.82 E-value=0.0084 Score=58.14 Aligned_cols=116 Identities=16% Similarity=0.092 Sum_probs=72.2
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|+|||+|..|+.++.+|+..|. +++++|.+.=....+..+ |...+....+.+. +.++=|.+.+..- .
T Consensus 334 rVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~~~~I-~ 412 (989)
T PRK14852 334 RVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSFPEGV-A 412 (989)
T ss_pred cEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEEecCC-C
Confidence 79999999999999999999996 588887654433334332 2222223333333 3555555553311 1
Q ss_pred HHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
.+.+ +.+ +..-.+|||+... .......+.+.+.+.++.++.+.+.|..
T Consensus 413 ~en~---~~f---l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~ 461 (989)
T PRK14852 413 AETI---DAF---LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYS 461 (989)
T ss_pred HHHH---HHH---hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccC
Confidence 1112 122 2234688998875 3445566777788889999998877643
No 378
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=96.82 E-value=0.0026 Score=54.88 Aligned_cols=62 Identities=23% Similarity=0.341 Sum_probs=47.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHH-HHHCCCccc----CCHHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDE-LVAHGATVG----GSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~-l~~~g~~~~----~s~~~~~~~advvi~ 62 (226)
++|||||-|..|+-|+..-.+.|++|++.|.+++.... +....+... ..+.++++.||+|-.
T Consensus 2 ~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 2 KTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 57999999999999999999999999999988875433 333322222 246788889998743
No 379
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=96.81 E-value=0.0022 Score=53.11 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=62.0
Q ss_pred CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc---EEecC
Q 027255 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH---FLEAP 119 (226)
Q Consensus 43 g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~---~ld~p 119 (226)
|+.++++..|+++++|++++.+|.......++ +.+.++++.|.+|.+++|++|...-.+-+.+.++.+. |-.+.
T Consensus 128 GvkVtsDD~EAvk~aei~I~ftPfG~~t~~Ii---kki~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPaa 204 (342)
T PRK00961 128 GLKVTTDDREAVADADIVITWLPKGGMQPDII---EKFADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPGA 204 (342)
T ss_pred CceEecCcHHHhcCCCEEEEecCCCCCchHHH---HHHHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCCC
Confidence 46778899999999999999999887666777 7788999999999999999887776666666655543 33344
Q ss_pred CCCCh
Q 027255 120 VSGSK 124 (226)
Q Consensus 120 v~g~~ 124 (226)
|-|.+
T Consensus 205 VPgt~ 209 (342)
T PRK00961 205 VPEMK 209 (342)
T ss_pred CCCCC
Confidence 54544
No 380
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=96.81 E-value=0.013 Score=49.44 Aligned_cols=109 Identities=20% Similarity=0.267 Sum_probs=66.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|+|+|.+|..+|++|+..|. +++++|.+.-....+..+ |-..+....+-++ +.++-+...... ..
T Consensus 21 ~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~~~~-~~ 99 (286)
T cd01491 21 NVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVSTGP-LT 99 (286)
T ss_pred cEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEEecc-CC
Confidence 69999999999999999999996 599999776544444332 1111111111111 244444444321 11
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
.+.+ ..-.+||++. ..+.....+.+.++++++.|+.+-+.|
T Consensus 100 ~~~l----------~~fdvVV~~~-~~~~~~~~in~~c~~~~ipfI~a~~~G 140 (286)
T cd01491 100 TDEL----------LKFQVVVLTD-ASLEDQLKINEFCHSPGIKFISADTRG 140 (286)
T ss_pred HHHH----------hcCCEEEEec-CCHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 1222 2234666664 467777888888888888887775443
No 381
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.81 E-value=0.0064 Score=51.36 Aligned_cols=74 Identities=22% Similarity=0.286 Sum_probs=57.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||- ...|.+++..|.++ +..|++++... .++.+.+++||+||+++..+..+..
T Consensus 158 K~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~nl~~~~~~ADIvIsAvGkp~~i~~--- 220 (293)
T PRK14185 158 KKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS--------------KNLKKECLEADIIIAALGQPEFVKA--- 220 (293)
T ss_pred CEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC--------------CCHHHHHhhCCEEEEccCCcCccCH---
Confidence 36889987 56899999999987 57898886432 3577888999999999988654321
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 221 ------~~vk~gavVIDvGin~ 236 (293)
T PRK14185 221 ------DMVKEGAVVIDVGTTR 236 (293)
T ss_pred ------HHcCCCCEEEEecCcc
Confidence 4567999999988753
No 382
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=96.80 E-value=0.0042 Score=51.11 Aligned_cols=66 Identities=24% Similarity=0.249 Sum_probs=47.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC--CCcc-----cC---CHHHHh-hhCCeEEEecCC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH--GATV-----GG---SPAEVI-KKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~--g~~~-----~~---s~~~~~-~~advvi~~~p~ 66 (226)
|+|.|+|. |.+|+.+++.|+++||+|++..|++++...+... ++.+ .+ +..+.+ ...|+||.+.+.
T Consensus 18 ~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~~~g~ 95 (251)
T PLN00141 18 KTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVICATGF 95 (251)
T ss_pred CeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 57999995 9999999999999999999999998876554322 2221 11 122344 468988877643
No 383
>PRK07411 hypothetical protein; Validated
Probab=96.79 E-value=0.0086 Score=52.89 Aligned_cols=114 Identities=13% Similarity=0.131 Sum_probs=64.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.|||+|..|..++++|+..|. +++++|.+.=....+..+ |-..+....+.+. +.++-+...+..-.-
T Consensus 40 ~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~~~~~~~ 119 (390)
T PRK07411 40 SVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLYETRLSS 119 (390)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEEecccCH
Confidence 79999999999999999999996 588888764433333322 2222222222222 234444443321111
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
... .+.+..-.+|||++-. +..-..+.+.+.+.++.++.+.++|.
T Consensus 120 ~~~-------~~~~~~~D~Vvd~~d~-~~~r~~ln~~~~~~~~p~v~~~~~g~ 164 (390)
T PRK07411 120 ENA-------LDILAPYDVVVDGTDN-FPTRYLVNDACVLLNKPNVYGSIFRF 164 (390)
T ss_pred HhH-------HHHHhCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEEEccC
Confidence 111 1112234567776553 34445566666777777777766665
No 384
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=96.77 E-value=0.0024 Score=53.04 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=57.4
Q ss_pred CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 43 GATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 43 g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
|+.++++..|+++++|++++.+|.......++ +.+.+.++.|.+|.+++|++|...-.+-+.+.++.+.
T Consensus 126 GvkVtsDD~EAv~~aei~I~ftPfG~~q~~Ii---kkii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~Dvg 194 (340)
T TIGR01723 126 GLKVTTDDREAVEDADIIITWLPKGNKQPDII---KKFIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLN 194 (340)
T ss_pred CceEecCcHHHhcCCCEEEEEcCCCCCchHHH---HHHHhhCCCCCEEeccccCChHHHHHHHHhhCcccCC
Confidence 46778899999999999999999887666777 7788999999999999999888776666666655543
No 385
>PRK08309 short chain dehydrogenase; Provisional
Probab=96.77 E-value=0.013 Score=46.05 Aligned_cols=101 Identities=19% Similarity=0.120 Sum_probs=60.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
|++.|+|...||..+++.|++.|++|.+.+|++++.+.+...-. . ..+...+-.-+.+...+..++ ++.
T Consensus 1 m~vlVtGGtG~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~----~----~~~i~~~~~Dv~d~~sv~~~i---~~~ 69 (177)
T PRK08309 1 MHALVIGGTGMLKRVSLWLCEKGFHVSVIARREVKLENVKREST----T----PESITPLPLDYHDDDALKLAI---KST 69 (177)
T ss_pred CEEEEECcCHHHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhh----c----CCcEEEEEccCCCHHHHHHHH---HHH
Confidence 78999998778888999999999999999999887766543100 0 011222223455666677666 444
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
.....+-.+++.. +.....+.+.+.+++.|+.
T Consensus 70 l~~~g~id~lv~~--vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 70 IEKNGPFDLAVAW--IHSSAKDALSVVCRELDGS 101 (177)
T ss_pred HHHcCCCeEEEEe--ccccchhhHHHHHHHHccC
Confidence 3333222244433 2333455566666666654
No 386
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.76 E-value=0.006 Score=57.45 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=49.2
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~~--------s~~ 51 (226)
++|.|||.|..|...|..|.+.||+|++|++.+. ..+.+.+.|+.+.. +..
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i~~~ 407 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDISLE 407 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcCCHH
Confidence 4799999999999999999999999999998643 23345555654321 344
Q ss_pred HHhhhCCeEEEecC
Q 027255 52 EVIKKCTITIGMLA 65 (226)
Q Consensus 52 ~~~~~advvi~~~p 65 (226)
+...+.|.||+++-
T Consensus 408 ~~~~~~DavilAtG 421 (654)
T PRK12769 408 SLLEDYDAVFVGVG 421 (654)
T ss_pred HHHhcCCEEEEeCC
Confidence 55567999999874
No 387
>PRK14030 glutamate dehydrogenase; Provisional
Probab=96.76 E-value=0.006 Score=54.45 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=66.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEE--------Ec---CCchhHHHH---HHC-------------CCcccCCHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV--------WN---RTLSKCDEL---VAH-------------GATVGGSPAEV 53 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~--------~d---r~~~~~~~l---~~~-------------g~~~~~s~~~~ 53 (226)
.+|.|-|+|++|...|+.|.+.|.+|+. || .+.++++.+ ... +++..+ .+++
T Consensus 229 ~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~-~~~~ 307 (445)
T PRK14030 229 KTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFA-GKKP 307 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcC-Cccc
Confidence 3799999999999999999999999888 88 666663322 211 222222 2333
Q ss_pred h-hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 54 I-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 54 ~-~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+ ..|||.+-|--......+.. +.+.. .+=++|+...+. |.+ .+..+.+.++|+.|+..
T Consensus 308 ~~~~cDVliPcAl~n~I~~~na---~~l~~--~~ak~V~EgAN~-p~t-~eA~~iL~~rGI~~vPD 366 (445)
T PRK14030 308 WEQKVDIALPCATQNELNGEDA---DKLIK--NGVLCVAEVSNM-GCT-AEAIDKFIAAKQLFAPG 366 (445)
T ss_pred eeccccEEeeccccccCCHHHH---HHHHH--cCCeEEEeCCCC-CCC-HHHHHHHHHCCCEEeCc
Confidence 2 35888887764322222222 12211 023566666665 533 34567888899887643
No 388
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=96.75 E-value=0.038 Score=44.56 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=71.5
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc-hhHHHHHHCC-Cccc---CCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL-SKCDELVAHG-ATVG---GSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~-~~~~~l~~~g-~~~~---~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||.|..|..=++.|++.|.+|+++.... .....+...+ +... -.+.+ ...+++||.+++++..-+.+..
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~ln~~i~~ 91 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEELNERIAK 91 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHHHHHHHHH
Confidence 468999999999999999999999999998766 4555555443 2221 12223 3459999999987543333321
Q ss_pred c--c----------cc-----cccccCCCcEEEecCCC--CHHHHHHHHHHHHh
Q 027255 76 D--K----------GG-----VLEQICPGKGYIDMSTV--DHETSIKISRAITS 110 (226)
Q Consensus 76 ~--~----------~~-----l~~~l~~g~ivvd~st~--~~~~~~~l~~~~~~ 110 (226)
. + .. +-....++.+.|-.||. +|..++.+-+.+.+
T Consensus 92 ~a~~~~i~vNv~D~p~~~~f~~Pa~~~r~~l~iaIsT~G~sP~la~~ir~~Ie~ 145 (210)
T COG1648 92 AARERRILVNVVDDPELCDFIFPAIVDRGPLQIAISTGGKSPVLARLLREKIEA 145 (210)
T ss_pred HHHHhCCceeccCCcccCceecceeeccCCeEEEEECCCCChHHHHHHHHHHHH
Confidence 0 0 00 11123456677777774 69888888887765
No 389
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=96.71 E-value=0.0037 Score=53.78 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=44.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCC-------eEEEEcCCchh--HHH----HHH------CCCcccCCHHHHhhhCCeEE
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGF-------KVTVWNRTLSK--CDE----LVA------HGATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~-------~V~~~dr~~~~--~~~----l~~------~g~~~~~s~~~~~~~advvi 61 (226)
||+|||+ |.+|+.+|..|...+. ++.++|+++.. ++. +.. .++....+..+.++++|+|+
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV 80 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI 80 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence 6999999 9999999999997553 59999996542 211 111 11222335567889999999
Q ss_pred EecC
Q 027255 62 GMLA 65 (226)
Q Consensus 62 ~~~p 65 (226)
++.-
T Consensus 81 itAG 84 (324)
T TIGR01758 81 LVGA 84 (324)
T ss_pred EcCC
Confidence 8753
No 390
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=96.68 E-value=0.032 Score=46.72 Aligned_cols=110 Identities=20% Similarity=0.147 Sum_probs=68.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEE--cCCch--hHHHHHHCCCcc------cCCHHHHhhh-CC-eEEEecCCHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVW--NRTLS--KCDELVAHGATV------GGSPAEVIKK-CT-ITIGMLADPA 68 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~--dr~~~--~~~~l~~~g~~~------~~s~~~~~~~-ad-vvi~~~p~~~ 68 (226)
+|.|.|+ |.||+..++.+.+.++++... ++... ....+...++.+ ..++.++.+. +| ++|=.+ .|.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~v~~~~~~~~~l~~~~~~~~d~VvIDFT-~P~ 80 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADAAGLEIVPTSFGGEEEAENEAEVAGKEILLHGPSEREARIGEVFAKYPELICIDYT-HPS 80 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhcCCCEEEeeEccccccccchhhhcccceeeeccccccccHHHHHhhcCCEEEEECC-ChH
Confidence 7889997 999999999998888887763 43221 222333335555 6778888776 89 555444 556
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS 121 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~ 121 (226)
.+.+.+ ..++..+..+|..+|. +....+++. ...++..+=+|-+
T Consensus 81 ~~~~n~------~~~~~~gv~~ViGTTG~~~~~~~~l~---~~~~i~~l~apNf 125 (275)
T TIGR02130 81 AVNDNA------AFYGKHGIPFVMGTTGGDREALAKLV---ADAKHPAVIAPNM 125 (275)
T ss_pred HHHHHH------HHHHHCCCCEEEcCCCCCHHHHHHHH---HhcCCCEEEECcc
Confidence 666555 2344466666666664 555554443 3334666666644
No 391
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=96.67 E-value=0.014 Score=47.74 Aligned_cols=40 Identities=28% Similarity=0.355 Sum_probs=35.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
|+|-|+|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 41 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELK 41 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 78999985 99999999999999999999999988776654
No 392
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=96.67 E-value=0.0073 Score=56.73 Aligned_cols=66 Identities=18% Similarity=0.233 Sum_probs=50.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~ 51 (226)
++|.|||.|..|...|..|.+.||+|++|++.+. ..+.+.+.|+.+. -+..
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 390 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDITFS 390 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcCCHH
Confidence 4799999999999999999999999999998763 3445566665431 2445
Q ss_pred HHhhhCCeEEEecCC
Q 027255 52 EVIKKCTITIGMLAD 66 (226)
Q Consensus 52 ~~~~~advvi~~~p~ 66 (226)
++....|.||+++-.
T Consensus 391 ~l~~~~DaV~latGa 405 (639)
T PRK12809 391 DLTSEYDAVFIGVGT 405 (639)
T ss_pred HHHhcCCEEEEeCCC
Confidence 666779999998744
No 393
>PRK14031 glutamate dehydrogenase; Provisional
Probab=96.66 E-value=0.011 Score=52.76 Aligned_cols=109 Identities=15% Similarity=0.016 Sum_probs=64.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEE-Ec----------CCchhHH---HHHHC------------CCcccCCHHHH-
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTV-WN----------RTLSKCD---ELVAH------------GATVGGSPAEV- 53 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~-~d----------r~~~~~~---~l~~~------------g~~~~~s~~~~- 53 (226)
++|.|.|.|++|...|+.|.+.|.+|++ .| .+.+++. ++... ++... +.++.
T Consensus 229 ~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i-~~d~~~ 307 (444)
T PRK14031 229 KVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV-EGARPW 307 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc-CCcccc
Confidence 4799999999999999999999999886 56 4544433 11111 22222 23333
Q ss_pred hhhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEe
Q 027255 54 IKKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLE 117 (226)
Q Consensus 54 ~~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld 117 (226)
-..||+++-|.-......+.. ..+. .++..+|..+...|.+.+ -.+.+.++|+.++.
T Consensus 308 ~~~cDIliPaAl~n~I~~~na---~~l~---a~g~~~V~EgAN~P~t~e-A~~~L~~rgI~~~P 364 (444)
T PRK14031 308 GEKGDIALPSATQNELNGDDA---RQLV---ANGVIAVSEGANMPSTPE-AIKVFQDAKILYAP 364 (444)
T ss_pred cCCCcEEeecccccccCHHHH---HHHH---hcCCeEEECCCCCCCCHH-HHHHHHHCCcEEeC
Confidence 246898887764432222222 1221 235555555554465554 34567788887753
No 394
>PLN02427 UDP-apiose/xylose synthase
Probab=96.65 E-value=0.0048 Score=54.11 Aligned_cols=64 Identities=19% Similarity=0.321 Sum_probs=47.3
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHCC-------Ccc-------cCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAHG-------ATV-------GGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~-------~~s~~~~~~~advvi~~~ 64 (226)
|||.|.|. |.+|+.+++.|+++ |++|++++|+.++...+...+ ++. ..+..++++++|+||=+.
T Consensus 15 ~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 15 LTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred cEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 78999985 99999999999998 599999999877665544321 111 123455677899988765
No 395
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.64 E-value=0.036 Score=49.55 Aligned_cols=122 Identities=11% Similarity=0.049 Sum_probs=71.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh--HHHHHHCCCcccC--CHHHHhhhCCeEEEec---CCHHHHHHHh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK--CDELVAHGATVGG--SPAEVIKKCTITIGML---ADPAAALSVV 74 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~--~~~l~~~g~~~~~--s~~~~~~~advvi~~~---p~~~~~~~v~ 74 (226)
+|.|||+|..|.+.++.|.+.|++|+++|..+.. .+.+. .|+.... ...+.++..|+||..- ++.+.+.+..
T Consensus 8 ~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~-~g~~~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~~a~ 86 (438)
T PRK03806 8 KVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLP-ENVERHTGSLNDEWLLAADLIVASPGIALAHPSLSAAA 86 (438)
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHh-cCCEEEeCCCCHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 6999999999999999999999999999975443 23443 3665432 2334456788665543 1222333322
Q ss_pred h-c-----ccccccccCCCcEEEec-CCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 75 F-D-----KGGVLEQICPGKGYIDM-STVDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 75 ~-~-----~~~l~~~l~~g~ivvd~-st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
. | +.+++..+.+..+|--+ |.....++.-+++.+...|..+.-+...|.|
T Consensus 87 ~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g~~~~~~gnig~p 143 (438)
T PRK03806 87 DAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAAGWKVGVGGNIGLP 143 (438)
T ss_pred HCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEeCCcchh
Confidence 1 1 01122222233344444 4467777888888888877654433333333
No 396
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.63 E-value=0.008 Score=50.61 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=57.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHh----CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~----~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||- ...|.+++..|.+ .+..|++++.+. .++.+.+++||+||.++..+..+..
T Consensus 158 k~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t--------------~~l~~~~~~ADIVI~AvG~p~li~~--- 220 (286)
T PRK14184 158 KKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT--------------PDLAEECREADFLFVAIGRPRFVTA--- 220 (286)
T ss_pred CEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCCCCcCCH---
Confidence 36889987 5689999999998 678899887543 3577888999999999977554322
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.++||.+...
T Consensus 221 ------~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 221 ------DMVKPGAVVVDVGINR 236 (286)
T ss_pred ------HHcCCCCEEEEeeeec
Confidence 3457999999987543
No 397
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.62 E-value=0.019 Score=55.49 Aligned_cols=112 Identities=17% Similarity=0.175 Sum_probs=71.1
Q ss_pred eEEEEecChhHHHH-HHHHHhCCCeEEEEcCCch-hHHHHHHCCCcccC-CHHHHhhhCCeEEEec--C-CHHHHHHHhh
Q 027255 2 EVGFLGLGIMGKAI-SMNLLRNGFKVTVWNRTLS-KCDELVAHGATVGG-SPAEVIKKCTITIGML--A-DPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG~G~mG~~~-A~~l~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~~~~~~advvi~~~--p-~~~~~~~v~~ 75 (226)
+|.|||+|..|.+. |+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.+.++|+|+..- | +...++....
T Consensus 6 ~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~~ 85 (809)
T PRK14573 6 FYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAKS 85 (809)
T ss_pred eEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHHH
Confidence 49999999999997 9999999999999997543 34567777876532 2335566789887653 2 2233333221
Q ss_pred -c-----ccccccccCCC-cEEEecCC-CCHHHHHHHHHHHHhcCC
Q 027255 76 -D-----KGGVLEQICPG-KGYIDMST-VDHETSIKISRAITSKGG 113 (226)
Q Consensus 76 -~-----~~~l~~~l~~g-~ivvd~st-~~~~~~~~l~~~~~~~g~ 113 (226)
| +.+++..+.+. .+|.-+.| ....++.-++..+...|.
T Consensus 86 ~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g~ 131 (809)
T PRK14573 86 RGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAKK 131 (809)
T ss_pred CCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCCC
Confidence 1 11222222233 45544544 566777777888887775
No 398
>PTZ00325 malate dehydrogenase; Provisional
Probab=96.61 E-value=0.0036 Score=53.78 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=44.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCC--CeEEEEcCCchhHH--HHHHC--CCcc--cCC---HHHHhhhCCeEEEecC
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNG--FKVTVWNRTLSKCD--ELVAH--GATV--GGS---PAEVIKKCTITIGMLA 65 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G--~~V~~~dr~~~~~~--~l~~~--g~~~--~~s---~~~~~~~advvi~~~p 65 (226)
||+|||+ |.+|+.+|..|+..+ .++.++|++....+ .+... ...+ .++ ..++++++|+|+++.-
T Consensus 10 KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG 85 (321)
T PTZ00325 10 KVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG 85 (321)
T ss_pred EEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence 7999999 999999999999655 58999999433222 22221 1122 222 2678899999998864
No 399
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=96.61 E-value=0.0063 Score=52.11 Aligned_cols=89 Identities=20% Similarity=0.188 Sum_probs=56.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCe---EEEE--cCCchhH-HHHHHCCCcccC--CHHHHhhhCCeEEEecCCHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFK---VTVW--NRTLSKC-DELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL 71 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~---V~~~--dr~~~~~-~~l~~~g~~~~~--s~~~~~~~advvi~~~p~~~~~~ 71 (226)
+||||+|+ |..|+.|.+.|.+..+. +.++ .|+..+- -++......+-. ......+++|++|.|.+.+ ..+
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rSaG~~~~~f~~~~~~v~~~~~~~~~~~~~Divf~~ag~~-~s~ 80 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARSAGKKYIEFGGKSIGVPEDAADEFVFSDVDIVFFAAGGS-VSK 80 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccccCCccccccCccccCccccccccccccCCEEEEeCchH-HHH
Confidence 58999986 99999999999986542 4444 4444433 344433233222 1223345799999999874 345
Q ss_pred HHhhcccccccccCCCcEEEecCCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTV 96 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~ 96 (226)
++. . ...+.|.+|||.|+.
T Consensus 81 ~~~---p---~~~~~G~~VIdnsSa 99 (334)
T COG0136 81 EVE---P---KAAEAGCVVIDNSSA 99 (334)
T ss_pred HHH---H---HHHHcCCEEEeCCcc
Confidence 555 2 234578999998853
No 400
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=96.56 E-value=0.052 Score=44.14 Aligned_cols=109 Identities=17% Similarity=0.141 Sum_probs=69.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch-hHHHHHHCC-CcccC---CHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS-KCDELVAHG-ATVGG---SPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~---s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||.|.++..=++.|++.|.+|+++.+... .+..+...| +++.. ++ +.++++++||.++.+...-+.+..
T Consensus 26 ~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~-~dl~g~~LViaATdD~~vN~~I~~ 104 (223)
T PRK05562 26 IKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDK-EFIKDKHLIVIATDDEKLNNKIRK 104 (223)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCCh-HHhCCCcEEEECCCCHHHHHHHHH
Confidence 3689999999999999999999999999976543 344454433 32211 22 345789999999876443332221
Q ss_pred c--ccc-c-------------cc-ccCCCcEEEecCC--CCHHHHHHHHHHHHh
Q 027255 76 D--KGG-V-------------LE-QICPGKGYIDMST--VDHETSIKISRAITS 110 (226)
Q Consensus 76 ~--~~~-l-------------~~-~l~~g~ivvd~st--~~~~~~~~l~~~~~~ 110 (226)
- ..+ + .+ ....|.+.|-.|| .+|..++.+.+.+.+
T Consensus 105 ~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaIST~G~sP~lar~lR~~ie~ 158 (223)
T PRK05562 105 HCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFALNTKGGSPKTSVFIGEKVKN 158 (223)
T ss_pred HHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEEECCCcCcHHHHHHHHHHHH
Confidence 0 001 0 11 1334566666665 488888888887764
No 401
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0063 Score=49.28 Aligned_cols=131 Identities=15% Similarity=0.141 Sum_probs=76.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|.++|||.|..|+....+-...++... +-.|++++++.+.+.-+-...+.+...+-.+++|+.+|+. .+..+. .
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~va---a- 85 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVA---A- 85 (289)
T ss_pred eEEEEeecchHHHHHHHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHH---H-
Confidence 569999999999985555444444433 3378888888877653323334444445568899999885 444444 1
Q ss_pred cccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec-C---CCCChHhhc--cCcEEEEeccCC
Q 027255 80 VLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA-P---VSGSKQPAE--TGQLVILSAGEK 140 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~-p---v~g~~~~a~--~g~~~~~~gg~~ 140 (226)
.....||++++.||-.... .|-..+.+.|+.-..- | .+|.+.... .++.....-+|+
T Consensus 86 -~~~~rpg~iv~HcSga~~~---~il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~ 148 (289)
T COG5495 86 -TSLNRPGTIVAHCSGANGS---GILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADD 148 (289)
T ss_pred -hcccCCCeEEEEccCCCch---hhhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccc
Confidence 1234689999999875332 3444555666653333 2 334454444 344433333443
No 402
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=96.54 E-value=0.0055 Score=53.48 Aligned_cols=87 Identities=20% Similarity=0.339 Sum_probs=52.9
Q ss_pred CeEEEEec-ChhHHHHHHHHH-hCCCe---EEEEcCCc--hhHHHHHHCCCcccC--CHHHHhhhCCeEEEecCCHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLL-RNGFK---VTVWNRTL--SKCDELVAHGATVGG--SPAEVIKKCTITIGMLADPAAAL 71 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~-~~G~~---V~~~dr~~--~~~~~l~~~g~~~~~--s~~~~~~~advvi~~~p~~~~~~ 71 (226)
|+|+|||+ |..|..|.+.++ ...++ +..+.... .+.-.+......+.. +. +.++++|++|.|+|.. ..+
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~ss~~sg~~~~~f~g~~~~v~~~~~~-~~~~~~Divf~a~~~~-~s~ 79 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFSTSQAGGAAPSFGGKEGTLQDAFDI-DALKKLDIIITCQGGD-YTN 79 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEecchhhCCcccccCCCcceEEecCCh-hHhcCCCEEEECCCHH-HHH
Confidence 58999998 999999998554 45666 66654321 122122222122222 23 3457899999999884 455
Q ss_pred HHhhcccccccccCCC--cEEEecCC
Q 027255 72 SVVFDKGGVLEQICPG--KGYIDMST 95 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g--~ivvd~st 95 (226)
++. ..+ .+.| .+|||.|+
T Consensus 80 ~~~---~~~---~~aG~~~~VID~Ss 99 (369)
T PRK06598 80 EVY---PKL---RAAGWQGYWIDAAS 99 (369)
T ss_pred HHH---HHH---HhCCCCeEEEECCh
Confidence 554 222 2467 67999984
No 403
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.53 E-value=0.031 Score=50.36 Aligned_cols=122 Identities=17% Similarity=0.119 Sum_probs=70.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-CCc-ccCCHHHHhhhCCeEEEec--C-CHHHHHHHhh-
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-GAT-VGGSPAEVIKKCTITIGML--A-DPAAALSVVF- 75 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~-~~~s~~~~~~~advvi~~~--p-~~~~~~~v~~- 75 (226)
+|+|+|+|.-|.+.++.|. .|.+|+++|.++.....+.+. ... ......+.+.++|+||..- | +.+.++....
T Consensus 8 ~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a~~~ 86 (454)
T PRK01368 8 KIGVFGLGKTGISVYEELQ-NKYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIAKNF 86 (454)
T ss_pred EEEEEeecHHHHHHHHHHh-CCCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHHHHC
Confidence 7999999999999999998 499999999654433322221 111 1122234456789877653 2 2233332211
Q ss_pred -----cccccc-cccCCCcEEEecCC-CCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 76 -----DKGGVL-EQICPGKGYIDMST-VDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 76 -----~~~~l~-~~l~~g~ivvd~st-~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
++-+++ ...+...+|--+.| ....++.-+++.+...|..+.-+...|.|
T Consensus 87 gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g~~~~~~GniG~p 142 (454)
T PRK01368 87 NIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNSNGLDYPVAGNIGVP 142 (454)
T ss_pred CCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEEccCCHH
Confidence 111222 22222245544544 56777777888888877765544444544
No 404
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=96.53 E-value=0.0037 Score=49.23 Aligned_cols=65 Identities=14% Similarity=0.251 Sum_probs=44.3
Q ss_pred eEEEEecChhHHHHH-H-HHHhC----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEEe
Q 027255 2 EVGFLGLGIMGKAIS-M-NLLRN----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIGM 63 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A-~-~l~~~----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~~ 63 (226)
||+|||.|+.-.+.- . .+... +-++.++|+++++.+.... .| +..+++.+++++++|.||.+
T Consensus 1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~ 80 (183)
T PF02056_consen 1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQ 80 (183)
T ss_dssp EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE-
T ss_pred CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEE
Confidence 799999999877742 2 22221 2479999999998774321 23 34588999999999999998
Q ss_pred cCC
Q 027255 64 LAD 66 (226)
Q Consensus 64 ~p~ 66 (226)
.-.
T Consensus 81 irv 83 (183)
T PF02056_consen 81 IRV 83 (183)
T ss_dssp --T
T ss_pred eee
Confidence 753
No 405
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=96.53 E-value=0.0072 Score=49.91 Aligned_cols=110 Identities=18% Similarity=0.155 Sum_probs=63.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEE--------cCCchhHHHHHH---C-CC--cccC----------CH-HHHh-
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVW--------NRTLSKCDELVA---H-GA--TVGG----------SP-AEVI- 54 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~--------dr~~~~~~~l~~---~-g~--~~~~----------s~-~~~~- 54 (226)
+++.|-|.|++|...|+.|.+.|..|... |.+.-..+.+.+ . +. .... +. ++.+
T Consensus 33 ~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~ 112 (244)
T PF00208_consen 33 KRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPNDDEILS 112 (244)
T ss_dssp CEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGT
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEecccccccc
Confidence 47899999999999999999999886654 655444555443 2 32 2111 12 1444
Q ss_pred hhCCeEEEecCCHHHHHHHhhcccccccccCCC-cEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 55 KKCTITIGMLADPAAALSVVFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 55 ~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g-~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
..||+++.|--......+.+ . ..++++ ++|+...+. |-+.... +.+.++|+.++.-
T Consensus 113 ~~~DiliP~A~~~~I~~~~~---~---~~i~~~akiIvegAN~-p~t~~a~-~~L~~rGI~viPD 169 (244)
T PF00208_consen 113 VDCDILIPCALGNVINEDNA---P---SLIKSGAKIIVEGANG-PLTPEAD-EILRERGILVIPD 169 (244)
T ss_dssp SSSSEEEEESSSTSBSCHHH---C---HCHHTT-SEEEESSSS-SBSHHHH-HHHHHTT-EEE-H
T ss_pred ccccEEEEcCCCCeeCHHHH---H---HHHhccCcEEEeCcch-hccHHHH-HHHHHCCCEEEcc
Confidence 47999999854323222332 1 133334 456665543 2233333 3788999887654
No 406
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.52 E-value=0.014 Score=49.52 Aligned_cols=74 Identities=20% Similarity=0.274 Sum_probs=56.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC----CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN----GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~----G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||- ...|.++|..|.++ +..|++++... .++.+..++||+||+++-.+..+..
T Consensus 158 k~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T--------------~~l~~~~~~ADIvIsAvGkp~~i~~--- 220 (297)
T PRK14167 158 ADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT--------------DDLAAKTRRADIVVAAAGVPELIDG--- 220 (297)
T ss_pred CEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC--------------CCHHHHHhhCCEEEEccCCcCccCH---
Confidence 36889987 56899999999987 67899886432 3567888999999999977553221
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
+.+++|.+|||.+...
T Consensus 221 ------~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 221 ------SMLSEGATVIDVGINR 236 (297)
T ss_pred ------HHcCCCCEEEEccccc
Confidence 4567999999988654
No 407
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.52 E-value=0.012 Score=49.92 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=55.8
Q ss_pred CeEEEEec-ChhHHHHHHHHHh----CCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 1 MEVGFLGL-GIMGKAISMNLLR----NGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~----~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
++|.|||- ...|.+++..|.+ .+..|++++.+. .++.+.+++||+||.+++.+.. +
T Consensus 160 k~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t--------------~~l~~~~~~ADIvI~Avg~~~l----i- 220 (295)
T PRK14174 160 KHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT--------------KDIPSYTRQADILIAAIGKARF----I- 220 (295)
T ss_pred CEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc--------------hhHHHHHHhCCEEEEecCccCc----c-
Confidence 36889987 5689999999987 678888887653 2467888999999999977532 2
Q ss_pred cccccccccCCCcEEEecCCCC
Q 027255 76 DKGGVLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~st~~ 97 (226)
. .+.+++|.++||.+...
T Consensus 221 ~----~~~vk~GavVIDVgi~~ 238 (295)
T PRK14174 221 T----ADMVKPGAVVIDVGINR 238 (295)
T ss_pred C----HHHcCCCCEEEEeeccc
Confidence 1 13458999999987643
No 408
>PLN02775 Probable dihydrodipicolinate reductase
Probab=96.50 E-value=0.029 Score=47.24 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=68.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEE-EcCCchh--HH-HHHHCCCccc--CCHHHHhh-----hCCeEEEecCCHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTV-WNRTLSK--CD-ELVAHGATVG--GSPAEVIK-----KCTITIGMLADPA 68 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~-~dr~~~~--~~-~l~~~g~~~~--~s~~~~~~-----~advvi~~~p~~~ 68 (226)
++|.|.|+ |.||+..++.+.+.++++.. .|+.+.- .. .+...++... .++++++. .+|.|++=...++
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~~~~~~~~VvIDFT~P~ 91 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSVKAEYPNLIVVDYTLPD 91 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHhhccCCCEEEEECCChH
Confidence 47899997 99999999999998888765 4654422 11 2222255555 77777772 3784444444666
Q ss_pred HHHHHhhcccccccccCCCcEEEecCCC-CHHHHHHHHHHHHhcCCcEEecCCC
Q 027255 69 AALSVVFDKGGVLEQICPGKGYIDMSTV-DHETSIKISRAITSKGGHFLEAPVS 121 (226)
Q Consensus 69 ~~~~v~~~~~~l~~~l~~g~ivvd~st~-~~~~~~~l~~~~~~~g~~~ld~pv~ 121 (226)
.+.+.+ + .++..|..+|..||. +++ ++.+...++++..+=+|-+
T Consensus 92 a~~~~~---~---~~~~~g~~~VvGTTG~~~e---~l~~~~~~~~i~vv~apNf 136 (286)
T PLN02775 92 AVNDNA---E---LYCKNGLPFVMGTTGGDRD---RLLKDVEESGVYAVIAPQM 136 (286)
T ss_pred HHHHHH---H---HHHHCCCCEEEECCCCCHH---HHHHHHhcCCccEEEECcc
Confidence 666655 2 334456666666664 444 3334444456666666644
No 409
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=96.46 E-value=0.0073 Score=52.11 Aligned_cols=63 Identities=22% Similarity=0.384 Sum_probs=45.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhC-CCeEEEEcCCchhHHHHHHC-CCcc-----c---CCHHHHhhhCCeEEEe
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRN-GFKVTVWNRTLSKCDELVAH-GATV-----G---GSPAEVIKKCTITIGM 63 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~-G~~V~~~dr~~~~~~~l~~~-g~~~-----~---~s~~~~~~~advvi~~ 63 (226)
|+|.|.|. |.+|+.+++.|++. ||+|++++|+.++...+... ++.+ . ....++++++|+||-+
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~d~ViH~ 75 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDITINKEWIEYHVKKCDVILPL 75 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCCCCHHHHHHHHcCCCEEEEC
Confidence 58999997 99999999999986 79999999987655444322 2221 1 1233456789998854
No 410
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=96.46 E-value=0.015 Score=52.63 Aligned_cols=66 Identities=21% Similarity=0.265 Sum_probs=49.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCcccC--------CHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVGG--------SPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~~--------s~~ 51 (226)
.+|.|||.|..|...|..|.+.|++|++|++.+. ..+.+.+.|+.... ...
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~~~~ 221 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDISLD 221 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCccCHH
Confidence 3699999999999999999999999999988752 24455666754321 234
Q ss_pred HHhhhCCeEEEecCC
Q 027255 52 EVIKKCTITIGMLAD 66 (226)
Q Consensus 52 ~~~~~advvi~~~p~ 66 (226)
+.....|.||+++-.
T Consensus 222 ~~~~~~D~vilAtGa 236 (467)
T TIGR01318 222 DLLEDYDAVFLGVGT 236 (467)
T ss_pred HHHhcCCEEEEEeCC
Confidence 445579999998854
No 411
>PRK06182 short chain dehydrogenase; Validated
Probab=96.46 E-value=0.024 Score=47.02 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=34.6
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
+|.|.|. |.+|..+++.|++.|++|++.+|++++.+.+..
T Consensus 5 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~ 45 (273)
T PRK06182 5 VALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS 45 (273)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 5778885 999999999999999999999999888766543
No 412
>PRK05865 hypothetical protein; Provisional
Probab=96.46 E-value=0.0068 Score=58.40 Aligned_cols=62 Identities=16% Similarity=0.279 Sum_probs=45.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCc-------ccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGAT-------VGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~-------~~~s~~~~~~~advvi~~~p 65 (226)
|||.|.|. |.+|+.+++.|.++||+|++++|+.... + ..++. -..+..++++++|+||-+..
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~--~-~~~v~~v~gDL~D~~~l~~al~~vD~VVHlAa 70 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS--W-PSSADFIAADIRDATAVESAMTGADVVAHCAW 70 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh--c-ccCceEEEeeCCCHHHHHHHHhCCCEEEECCC
Confidence 89999985 9999999999999999999999875321 1 11211 12244556778999998864
No 413
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=96.44 E-value=0.0054 Score=52.22 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=45.6
Q ss_pred EEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHH----HC------CCcccCCHHHHhhhCCeEEEecC
Q 027255 5 FLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELV----AH------GATVGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 5 vIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~~~~~~advvi~~~p 65 (226)
|||+|.+|..+|..|+..+. ++.++|++.++++... .. ...+..+.-+.+++||+|+++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 69999999999999998875 6999999887654322 21 23444455678899999999763
No 414
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=96.44 E-value=0.038 Score=45.26 Aligned_cols=111 Identities=16% Similarity=0.182 Sum_probs=65.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCC---H
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLAD---P 67 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~---~ 67 (226)
+|.|+|+|.+|+.++.+|++.|. +++++|.+.=....+..+ |-..+....+-+. +.++-+...+. +
T Consensus 13 ~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~~~i~~ 92 (231)
T cd00755 13 HVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVEEFLTP 92 (231)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEeeeecCH
Confidence 69999999999999999999996 789998765433333222 2111111222222 23444444432 1
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
+.....+ . ..-.+|||+.-. +.....+.+.+.+.++.++.+--.|
T Consensus 93 ~~~~~l~-------~--~~~D~VvdaiD~-~~~k~~L~~~c~~~~ip~I~s~g~g 137 (231)
T cd00755 93 DNSEDLL-------G--GDPDFVVDAIDS-IRAKVALIAYCRKRKIPVISSMGAG 137 (231)
T ss_pred hHHHHHh-------c--CCCCEEEEcCCC-HHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 1122222 1 123578887554 4455678888888899888874333
No 415
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=96.44 E-value=0.0082 Score=53.59 Aligned_cols=65 Identities=15% Similarity=0.222 Sum_probs=48.8
Q ss_pred CeEEEEecChh-HHHHHHHHHhC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIM-GKAISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~m-G~~~A~~l~~~-----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~ 62 (226)
|||+|||.|+. ...+.+.|+.. +-+|.++|.++++.+.... .| +..+++.++++++||.||.
T Consensus 1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~~Al~gADfVi~ 80 (425)
T cd05197 1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTIAKRYVEEVGADIKFEKTMDLEDAIIDADFVIN 80 (425)
T ss_pred CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEEE
Confidence 79999999984 33456666643 3579999999988765322 23 4568899999999999999
Q ss_pred ecC
Q 027255 63 MLA 65 (226)
Q Consensus 63 ~~p 65 (226)
..-
T Consensus 81 ~ir 83 (425)
T cd05197 81 QFR 83 (425)
T ss_pred eee
Confidence 874
No 416
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=96.43 E-value=0.013 Score=55.29 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=48.9
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh---------------------HHHHHHCCCccc--------CCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATVG--------GSPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~---------------------~~~l~~~g~~~~--------~s~~ 51 (226)
++|.|||.|..|...|..|.+.||+|+++++++.. .+.+...|+.+. -+.+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~~~ 273 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDITLE 273 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccCHH
Confidence 47999999999999999999999999999986532 334455565432 1234
Q ss_pred HHhhhCCeEEEecCC
Q 027255 52 EVIKKCTITIGMLAD 66 (226)
Q Consensus 52 ~~~~~advvi~~~p~ 66 (226)
+.....|.||+++-.
T Consensus 274 ~~~~~~DaVilAtGa 288 (652)
T PRK12814 274 ELQKEFDAVLLAVGA 288 (652)
T ss_pred HHHhhcCEEEEEcCC
Confidence 444568999998744
No 417
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.43 E-value=0.0093 Score=49.16 Aligned_cols=64 Identities=23% Similarity=0.238 Sum_probs=54.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc-------cCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV-------GGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~~~~~~advvi~~~p 65 (226)
|+|.|+|. |..|+.+++.|.+.||+|.+..|++++...+. .++.+ ..++..++++.|.++++.+
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 78999975 99999999999999999999999999998887 54433 3456677788999888887
No 418
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=96.42 E-value=0.013 Score=49.80 Aligned_cols=65 Identities=22% Similarity=0.221 Sum_probs=46.2
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHH---HHHC-----CC-------cccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDE---LVAH-----GA-------TVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~---l~~~-----g~-------~~~~s~~~~~~~advvi~~~ 64 (226)
++|.|.| .|.+|+.+++.|+++||+|++.+|+++.... +... .+ .-..+..++++++|+||-+.
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 84 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTA 84 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeC
Confidence 5788998 5999999999999999999998887654322 2111 11 11234556778899988876
Q ss_pred C
Q 027255 65 A 65 (226)
Q Consensus 65 p 65 (226)
.
T Consensus 85 ~ 85 (322)
T PLN02662 85 S 85 (322)
T ss_pred C
Confidence 3
No 419
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=96.42 E-value=0.031 Score=48.23 Aligned_cols=43 Identities=21% Similarity=0.176 Sum_probs=37.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~ 44 (226)
+|.|+|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+
T Consensus 169 ~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 169 LVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 5889999999999998888899999999999999887766665
No 420
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=96.41 E-value=0.026 Score=46.31 Aligned_cols=116 Identities=13% Similarity=0.080 Sum_probs=68.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
||.+||+|..|..++++|+..|+ +++++|.+.=....+.++ |...+....+.++ ..++-+......-.-
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 68999999999999999999997 588888765444444332 2111111222222 234333333221000
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGS 123 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~ 123 (226)
.+.. . ...++.-.+||++.. ....-..+.+.+.+.++.++++.+.|-
T Consensus 81 ~~~~-~----~~f~~~~DvVi~a~D-n~~aR~~ln~~c~~~~iplI~~g~~G~ 127 (234)
T cd01484 81 EQDF-N----DTFFEQFHIIVNALD-NIIARRYVNGMLIFLIVPLIESGTEGF 127 (234)
T ss_pred hhhc-h----HHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCCEEEEcccCC
Confidence 0000 0 012333467777655 455667788888888999999887664
No 421
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=96.40 E-value=0.0095 Score=50.47 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=28.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTL 33 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~ 33 (226)
||.|||+|..|..+|++|+..|. +++++|.+.
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~ 33 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGK 33 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence 68999999999999999999996 588887543
No 422
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=96.38 E-value=0.0022 Score=48.82 Aligned_cols=105 Identities=15% Similarity=0.197 Sum_probs=62.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhccccc
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGV 80 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l 80 (226)
++|++||. + .++++.|.+.+++++++|++++...+- .+........+++.+||+|++.-. ..+...+ +.+
T Consensus 12 ~~V~~VG~--f-~P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGs--TlvN~Ti---~~i 81 (147)
T PF04016_consen 12 DKVGMVGY--F-QPLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGS--TLVNGTI---DDI 81 (147)
T ss_dssp SEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECH--HCCTTTH---HHH
T ss_pred CEEEEEcC--c-HHHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEee--eeecCCH---HHH
Confidence 47999985 1 237888888899999999999764321 122245567788999999998742 2333333 445
Q ss_pred ccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 81 LEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 81 ~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
++..+++..++-...+.|-. .+.+.+.|+.++.+-
T Consensus 82 L~~~~~~~~vil~GpS~~~~----P~~l~~~Gv~~v~g~ 116 (147)
T PF04016_consen 82 LELARNAREVILYGPSAPLH----PEALFDYGVTYVGGS 116 (147)
T ss_dssp HHHTTTSSEEEEESCCGGS-----GGGGCCTT-SEEEEE
T ss_pred HHhCccCCeEEEEecCchhh----HHHHHhCCCCEEEEE
Confidence 56666566666655544421 223445677666553
No 423
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.35 E-value=0.0084 Score=40.35 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=31.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~ 36 (226)
||.|||.|..|.-+|..|.+.|.+|+++.+++.-.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 68999999999999999999999999999877643
No 424
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.35 E-value=0.031 Score=47.78 Aligned_cols=126 Identities=15% Similarity=0.196 Sum_probs=74.9
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
||.|||+|..|..++++|+..|. +++++|.+.=....+.++ |-..+....+.++ +.++-+.+... .+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~--~i 78 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHA--NI 78 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEec--cC
Confidence 68999999999999999999996 688998776554444433 2111222222222 23444443322 11
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~ 139 (226)
.+..+ ..+.+..-.+||++.. .+..-..+.+.+...++.++++.+.|. .|...+..++.
T Consensus 79 ~~~~~----~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~~ip~I~~gt~G~-----~G~v~vi~p~~ 137 (312)
T cd01489 79 KDPDF----NVEFFKQFDLVFNALD-NLAARRHVNKMCLAADVPLIESGTTGF-----LGQVQVIKKGK 137 (312)
T ss_pred CCccc----hHHHHhcCCEEEECCC-CHHHHHHHHHHHHHCCCCEEEEecCcc-----eeEEEEEcCCC
Confidence 11000 0122333456776654 456677788888999999999877663 34555555443
No 425
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=96.34 E-value=0.036 Score=46.12 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=60.4
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
|+|-|+|. |. |+.++..|.+.||+|++.-+++...+.+...| ..-|..-..+...+.+.+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-------------~~~v~~g~l~~~~l~~~l----- 61 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-------------ALTVHTGALDPQELREFL----- 61 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCccccccccC-------------CceEEECCCCHHHHHHHH-----
Confidence 89999988 76 99999999999999999998876554443322 112333333444444444
Q ss_pred cccccCCCcEEEecCCCC-HHHHHHHHHHHHhcCCcEEec
Q 027255 80 VLEQICPGKGYIDMSTVD-HETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~-~~~~~~l~~~~~~~g~~~ld~ 118 (226)
... .-.+|||.+.-. -..++...+.+.+.|+.|+.-
T Consensus 62 --~~~-~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 62 --KRH-SIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred --Hhc-CCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 111 234677877643 344555556666667766543
No 426
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=96.31 E-value=0.017 Score=48.31 Aligned_cols=74 Identities=23% Similarity=0.294 Sum_probs=58.4
Q ss_pred CeEEEEecCh-hHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccc
Q 027255 1 MEVGFLGLGI-MGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGG 79 (226)
Q Consensus 1 m~IgvIG~G~-mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~ 79 (226)
+++.|||-++ +|++|+..|...++.|++++... .++.+..+++|+|++++-.+..+.
T Consensus 157 k~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T--------------~~l~~~~k~ADIvv~AvG~p~~i~-------- 214 (283)
T COG0190 157 KNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT--------------KDLASITKNADIVVVAVGKPHFIK-------- 214 (283)
T ss_pred CEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC--------------CCHHHHhhhCCEEEEecCCccccc--------
Confidence 3688999865 79999999999999999998643 356677889999999997654333
Q ss_pred cccccCCCcEEEecCCCC
Q 027255 80 VLEQICPGKGYIDMSTVD 97 (226)
Q Consensus 80 l~~~l~~g~ivvd~st~~ 97 (226)
.+.+++|.++||.....
T Consensus 215 -~d~vk~gavVIDVGinr 231 (283)
T COG0190 215 -ADMVKPGAVVIDVGINR 231 (283)
T ss_pred -cccccCCCEEEecCCcc
Confidence 24567999999987653
No 427
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=96.29 E-value=0.036 Score=45.18 Aligned_cols=87 Identities=20% Similarity=0.170 Sum_probs=58.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-----CCHHHH-----hhhCCeEEEecCCHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-----GSPAEV-----IKKCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~~~-----~~~advvi~~~p~~~~~~ 71 (226)
+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+...|.... .+..+. -...|+++.+++......
T Consensus 137 ~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~ 216 (271)
T cd05188 137 TVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPETLA 216 (271)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHHHHH
Confidence 6889999999999999888899999999999888877766654221 111111 134788888876533343
Q ss_pred HHhhcccccccccCCCcEEEecCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMST 95 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st 95 (226)
..+ ..++++..+++.+.
T Consensus 217 ~~~-------~~l~~~G~~v~~~~ 233 (271)
T cd05188 217 QAL-------RLLRPGGRIVVVGG 233 (271)
T ss_pred HHH-------HhcccCCEEEEEcc
Confidence 333 44455556666554
No 428
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=96.29 E-value=0.031 Score=47.50 Aligned_cols=86 Identities=19% Similarity=0.184 Sum_probs=55.4
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc-CC----H-HHHhhhCCeEEEecCCHHHHHHHhh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG-GS----P-AEVIKKCTITIGMLADPAAALSVVF 75 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s----~-~~~~~~advvi~~~p~~~~~~~v~~ 75 (226)
+|.|+|.|.+|..+++.+...|++|++.++++++.+.+.+.|.... .. . ....+..|+++.++.........+
T Consensus 165 ~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~~~~~~- 243 (330)
T cd08245 165 RVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAAAEAAL- 243 (330)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHHHHHHH-
Confidence 5888999999998888888889999999999998888766664221 10 0 001124677776655444444443
Q ss_pred cccccccccCCCcEEEecC
Q 027255 76 DKGGVLEQICPGKGYIDMS 94 (226)
Q Consensus 76 ~~~~l~~~l~~g~ivvd~s 94 (226)
..++++..+++++
T Consensus 244 ------~~l~~~G~~i~~~ 256 (330)
T cd08245 244 ------GGLRRGGRIVLVG 256 (330)
T ss_pred ------HhcccCCEEEEEC
Confidence 3444555555554
No 429
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=96.28 E-value=0.0066 Score=50.60 Aligned_cols=63 Identities=19% Similarity=0.323 Sum_probs=45.0
Q ss_pred EEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc--cCCHHHHhhhCCeEEEecC
Q 027255 3 VGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV--GGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 3 IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~~~~~~advvi~~~p 65 (226)
|-|.| .|.+|+.+++.|.+.|++|++.+|++.....+...+... .....+.+.++|+||-|..
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 34666 599999999999999999999999887654332221111 1334556678999998874
No 430
>PRK06180 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.029 Score=46.77 Aligned_cols=40 Identities=20% Similarity=0.211 Sum_probs=34.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
+|.|.|. |.+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus 6 ~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~ 46 (277)
T PRK06180 6 TWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEA 46 (277)
T ss_pred EEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHh
Confidence 5778876 999999999999999999999999988766654
No 431
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=96.27 E-value=0.027 Score=48.32 Aligned_cols=67 Identities=19% Similarity=0.200 Sum_probs=47.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHH-HhhhCCeEEEecCCHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAE-VIKKCTITIGMLADPA 68 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~-~~~~advvi~~~p~~~ 68 (226)
+|.|.|.|.+|...++.+...|.+|++.++++++.+.+.+.|+...-+..+ ..+..|+++.+...+.
T Consensus 168 ~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~ 235 (329)
T TIGR02822 168 RLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGG 235 (329)
T ss_pred EEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHH
Confidence 588999999999877777778988999999999988888888754322111 1123466665554443
No 432
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=96.26 E-value=0.035 Score=45.86 Aligned_cols=110 Identities=15% Similarity=0.129 Sum_probs=68.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHC----CCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAH----GATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~----g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
+|.-||+|. |. ++..+.+.|.. |+.+|.++..++...+. ++...-...+.-...|+|+..... .....++
T Consensus 122 ~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~~-~~~~~l~-- 196 (250)
T PRK00517 122 TVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANILA-NPLLELA-- 196 (250)
T ss_pred EEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCcH-HHHHHHH--
Confidence 678899998 64 55566777765 99999999887655432 331000000000047888866533 4455555
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
..+...+++|..++-. .........+.+.+.+.|...+..
T Consensus 197 -~~~~~~LkpgG~lils-gi~~~~~~~v~~~l~~~Gf~~~~~ 236 (250)
T PRK00517 197 -PDLARLLKPGGRLILS-GILEEQADEVLEAYEEAGFTLDEV 236 (250)
T ss_pred -HHHHHhcCCCcEEEEE-ECcHhhHHHHHHHHHHCCCEEEEE
Confidence 5667788888776643 334455667778888888876653
No 433
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=96.26 E-value=0.035 Score=47.53 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=37.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHHHHCCC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDELVAHGA 44 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l~~~g~ 44 (226)
+|.|+|.|.+|...++.+...|.+ |++.++++++.+.+.+.|+
T Consensus 166 ~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 166 TVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 688999999999998888888988 9999999998887776665
No 434
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=96.25 E-value=0.012 Score=49.80 Aligned_cols=34 Identities=24% Similarity=0.376 Sum_probs=29.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSK 35 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~ 35 (226)
||.|||+|..|..++++|+..|+ +++++|.+.=.
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve 35 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTID 35 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEec
Confidence 68999999999999999999997 58888865433
No 435
>PRK06153 hypothetical protein; Provisional
Probab=96.25 E-value=0.03 Score=49.09 Aligned_cols=111 Identities=9% Similarity=-0.013 Sum_probs=63.3
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC---------CC--cccCCHHHHhhhCCeEEEecCCHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH---------GA--TVGGSPAEVIKKCTITIGMLADPAA 69 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~---------g~--~~~~s~~~~~~~advvi~~~p~~~~ 69 (226)
+|+|||+|..|+.++..|++.|. +++++|.+.=....+.++ |. ..+...++.+.....=+.+.+.. .
T Consensus 178 ~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~~~~~~-I 256 (393)
T PRK06153 178 RIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIVPHPEY-I 256 (393)
T ss_pred cEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEEEEeec-C
Confidence 79999999999999999999996 688888653222222211 11 11222223233222112222221 1
Q ss_pred HHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCC
Q 027255 70 ALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVS 121 (226)
Q Consensus 70 ~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~ 121 (226)
-++.+ ..+..-.+|++|.-. ...-..+.+.+.+.++.|+|+.+.
T Consensus 257 ~~~n~-------~~L~~~DiV~dcvDn-~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 257 DEDNV-------DELDGFTFVFVCVDK-GSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred CHHHH-------HHhcCCCEEEEcCCC-HHHHHHHHHHHHHcCCCEEEeeec
Confidence 11111 123334577777664 344566778888889999998653
No 436
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=96.25 E-value=0.0081 Score=50.55 Aligned_cols=64 Identities=23% Similarity=0.262 Sum_probs=45.0
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH------HCCCcccCCHHHHhhhC-CeEEEec
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV------AHGATVGGSPAEVIKKC-TITIGML 64 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~------~~g~~~~~s~~~~~~~a-dvvi~~~ 64 (226)
|+|.|.| .|.+|+.+++.|.++||+|++.+|.+....... .....-.....++.+.. |+||-+.
T Consensus 1 ~~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~a 72 (314)
T COG0451 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLA 72 (314)
T ss_pred CeEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEcc
Confidence 6789999 599999999999999999999999877654432 11111112333445555 8887765
No 437
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=96.25 E-value=0.023 Score=46.92 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=30.8
Q ss_pred CeEEEEecChhHHHHHHHHHhCC-----------CeEEEEcCCchhHHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNG-----------FKVTVWNRTLSKCDELV 40 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G-----------~~V~~~dr~~~~~~~l~ 40 (226)
.+|.|||+|..|..++++|++.| .+++++|.+.=....+.
T Consensus 12 ~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLn 62 (244)
T TIGR03736 12 VSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVG 62 (244)
T ss_pred CeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhh
Confidence 37999999999999999999864 28899987644333333
No 438
>PRK08017 oxidoreductase; Provisional
Probab=96.25 E-value=0.012 Score=48.17 Aligned_cols=43 Identities=21% Similarity=0.286 Sum_probs=37.5
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~ 44 (226)
+|.|.|. |.+|..+++.|+++|++|++.+|++++.+.+.+.++
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~ 47 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMNSLGF 47 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHHhCCC
Confidence 6889998 999999999999999999999999988777655443
No 439
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=96.24 E-value=0.023 Score=50.66 Aligned_cols=125 Identities=17% Similarity=0.207 Sum_probs=76.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC------eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF------KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLA 65 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~------~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p 65 (226)
||.|||+|..|..++++|+..|. +++++|.+.=....+.++ |...+....+.+. +.++-+....
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 68999999999999999999998 799998765443334332 2222222233332 3555555543
Q ss_pred CH--HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEec
Q 027255 66 DP--AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSA 137 (226)
Q Consensus 66 ~~--~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~g 137 (226)
.. +....++ . . ..+..-.+||++.- .+..-..+.+.+...++.++++.+.|. .|...+++-
T Consensus 81 ~~v~~~~~~~~-~-~---~f~~~~DvVi~alD-n~~aR~~vn~~C~~~~iPli~~gt~G~-----~G~v~v~iP 143 (435)
T cd01490 81 NRVGPETEHIF-N-D---EFWEKLDGVANALD-NVDARMYVDRRCVYYRKPLLESGTLGT-----KGNTQVVIP 143 (435)
T ss_pred cccChhhhhhh-h-H---HHhcCCCEEEECCC-CHHHHHHHHHHHHHhCCCEEEEecccc-----eeEEEEEeC
Confidence 21 1122222 1 1 12223456776654 456667888899999999999988876 345555553
No 440
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.23 E-value=0.027 Score=46.34 Aligned_cols=40 Identities=20% Similarity=0.283 Sum_probs=35.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
|+|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 41 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKAL 41 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 78889986 88999999999999999999999987765543
No 441
>COG1832 Predicted CoA-binding protein [General function prediction only]
Probab=96.23 E-value=0.071 Score=39.71 Aligned_cols=102 Identities=19% Similarity=0.210 Sum_probs=74.3
Q ss_pred CeEEEEec----ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhc
Q 027255 1 MEVGFLGL----GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFD 76 (226)
Q Consensus 1 m~IgvIG~----G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~ 76 (226)
++|+++|+ ..-+...++.|.++||+|+=.|+...- +++ .|-.+..|+.+.-+.-|+|-+.-+. +++.+++
T Consensus 17 K~IAvVG~S~~P~r~sy~V~kyL~~~GY~ViPVNP~~~~-~ei--LG~k~y~sL~dIpe~IDiVdvFR~~-e~~~~i~-- 90 (140)
T COG1832 17 KTIAVVGASDKPDRPSYRVAKYLQQKGYRVIPVNPKLAG-EEI--LGEKVYPSLADIPEPIDIVDVFRRS-EAAPEVA-- 90 (140)
T ss_pred ceEEEEecCCCCCccHHHHHHHHHHCCCEEEeeCcccch-HHh--cCchhhhcHHhCCCCCcEEEEecCh-hhhHHHH--
Confidence 46899998 457888999999999999988875432 222 4778889999999999999999976 6777776
Q ss_pred ccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCc
Q 027255 77 KGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGH 114 (226)
Q Consensus 77 ~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~ 114 (226)
++.++. ....++...+..+.+ ..+.+++.|..
T Consensus 91 -~eal~~-~~kv~W~QlGi~n~e----a~~~~~~aG~~ 122 (140)
T COG1832 91 -REALEK-GAKVVWLQLGIRNEE----AAEKARDAGLD 122 (140)
T ss_pred -HHHHhh-CCCeEEEecCcCCHH----HHHHHHHhCcH
Confidence 444442 266677777777665 33444555653
No 442
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=96.22 E-value=0.0068 Score=53.54 Aligned_cols=32 Identities=31% Similarity=0.655 Sum_probs=30.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCc
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL 33 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~ 33 (226)
+|.|||.|.+|...|..|++.|++|+++++.+
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 79999999999999999999999999999875
No 443
>PRK05693 short chain dehydrogenase; Provisional
Probab=96.22 E-value=0.041 Score=45.68 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=33.4
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
++-|.|. |.+|..+++.|++.|++|++.+|++++.+.+..
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~ 43 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAA 43 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4556665 899999999999999999999999887766544
No 444
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.21 E-value=0.007 Score=53.44 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=32.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 34 (226)
|+|.|||.|.+|...|..|++.|++|.++++...
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~~~ 34 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQPG 34 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCCc
Confidence 8999999999999999999999999999999754
No 445
>PRK06753 hypothetical protein; Provisional
Probab=96.21 E-value=0.0068 Score=52.70 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=32.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 34 (226)
|+|.|||.|..|...|..|.++|++|+++++++.
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 7999999999999999999999999999998875
No 446
>PRK10537 voltage-gated potassium channel; Provisional
Probab=96.20 E-value=0.085 Score=46.65 Aligned_cols=106 Identities=14% Similarity=0.141 Sum_probs=64.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcc---cCCHHHH-----hhhCCeEEEecCCHHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATV---GGSPAEV-----IKKCTITIGMLADPAAALSV 73 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~---~~s~~~~-----~~~advvi~~~p~~~~~~~v 73 (226)
.|-|+|.|.+|+.+++.|.+.|+++.+.+.+. .+.....+... -.+-.+. +++|+.|++++++++....+
T Consensus 242 HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~i 319 (393)
T PRK10537 242 HFIICGHSPLAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFV 319 (393)
T ss_pred eEEEECCChHHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHH
Confidence 37799999999999999999999999888652 33433344322 1122233 34789999998886654444
Q ss_pred hhcccccccccCCC-cEEEecCCCCHHHHHHHHHHHHhcCCcEEecC
Q 027255 74 VFDKGGVLEQICPG-KGYIDMSTVDHETSIKISRAITSKGGHFLEAP 119 (226)
Q Consensus 74 ~~~~~~l~~~l~~g-~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~p 119 (226)
.. .. ..+.|+ ++++-..+ ++ -.+.+++.|...+=.|
T Consensus 320 vL---~a-r~l~p~~kIIa~v~~--~~----~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 320 VL---AA-KEMSSDVKTVAAVND--SK----NLEKIKRVHPDMIFSP 356 (393)
T ss_pred HH---HH-HHhCCCCcEEEEECC--HH----HHHHHHhcCCCEEECH
Confidence 41 12 233343 45544432 32 2445566787765444
No 447
>PRK05993 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.033 Score=46.38 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=36.3
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG 43 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g 43 (226)
+|.|.|. |.+|..+|+.|++.|++|++.+|++++.+.+...+
T Consensus 6 ~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~ 48 (277)
T PRK05993 6 SILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAEG 48 (277)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
Confidence 4778887 99999999999999999999999998887776543
No 448
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=96.18 E-value=0.038 Score=47.63 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=41.0
Q ss_pred eEEEEecChhHHHHHHHHHh-C-CCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh--hCCeEEEecC
Q 027255 2 EVGFLGLGIMGKAISMNLLR-N-GFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK--KCTITIGMLA 65 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~-~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~--~advvi~~~p 65 (226)
+|.|+|+|.+|...++.+.+ . +.+|++.++++++.+.+.+.+... ...+..+ ..|+||-++.
T Consensus 166 ~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~--~~~~~~~~~g~d~viD~~G 231 (341)
T cd08237 166 VIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY--LIDDIPEDLAVDHAFECVG 231 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee--ehhhhhhccCCcEEEECCC
Confidence 58899999999987777765 3 467999999998887765544321 1112212 2566666664
No 449
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=96.17 E-value=0.053 Score=47.25 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=36.7
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA 44 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~ 44 (226)
+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus 194 ~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 194 SVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 58899999999988888878898 59999999999887776665
No 450
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=96.16 E-value=0.03 Score=47.55 Aligned_cols=38 Identities=18% Similarity=0.276 Sum_probs=30.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCCe-EEEEcCCchhHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFK-VTVWNRTLSKCDEL 39 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~-V~~~dr~~~~~~~l 39 (226)
++.|+|+|.+|...++.+...|.+ |.++++++++.+..
T Consensus 147 ~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a 185 (308)
T TIGR01202 147 PDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGA 185 (308)
T ss_pred cEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhh
Confidence 588999999999888777778876 66778887776544
No 451
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=96.16 E-value=0.048 Score=45.14 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=78.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.+||+|..|++.+.+|+.+|. +++++|.+.-....++.+ |-..+.+..+.+. +.++.+......-..
T Consensus 32 ~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka~~a~~~l~~ln~~v~v~~~~~~l~~ 111 (254)
T COG0476 32 RVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKAEVAAKALRKLNPLVEVVAYLERLDE 111 (254)
T ss_pred CEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHHHHHHHHHHHhCCCCeEEEeecccCh
Confidence 68999999999999999999996 588888876655555543 2211222222222 345555554332111
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCChHhhccCcEEEEeccC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSKQPAETGQLVILSAGE 139 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~~~a~~g~~~~~~gg~ 139 (226)
. ..........+++|++-. ..+-..+.+.....+..++++.+.+- .|...++..++
T Consensus 112 ~-------~~~~~~~~~d~v~d~~dn-~~~r~~iN~~~~~~~~pli~~~~~~~-----~g~~~~~~~~~ 167 (254)
T COG0476 112 E-------NAEELIAQFDVVLDCTDN-FETRYLINDACVKLGIPLVHGGAIGF-----EGQVTVIIPGD 167 (254)
T ss_pred h-------hHHHHhccCCEEEECCCC-HHHHHHHHHHHHHhCCCeEeeeeccc-----eEEEEEEecCC
Confidence 1 112334567788888765 55555666666777888888877764 45566666554
No 452
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=96.15 E-value=0.0064 Score=53.18 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=43.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCC-------CcccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHG-------ATVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~~~~~~advvi~~~ 64 (226)
|+|.|.|. |.+|+.+++.|.++||+|++.+|.......-...+ +.-..+...+++++|+||-+.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~Vih~A 93 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMSEDMFCHEFHLVDLRVMENCLKVTKGVDHVFNLA 93 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccccccccceEEECCCCCHHHHHHHHhCCCEEEEcc
Confidence 78999987 99999999999999999999998643211000001 111112334456789988776
No 453
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.13 E-value=0.022 Score=49.01 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=32.7
Q ss_pred eEEEEecChhHHHHHHHHHh-CCCeEE-EEcCCchhHHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLR-NGFKVT-VWNRTLSKCDELVA 41 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~-~G~~V~-~~dr~~~~~~~l~~ 41 (226)
|||+||.|.||+.|.....+ .|.+|. +-||+.+.+.+...
T Consensus 19 RVGlIGAG~mG~~ivtQi~~m~Gm~vvaisd~~~~~ak~A~~ 60 (438)
T COG4091 19 RVGLIGAGEMGTGIVTQIASMPGMEVVAISDRNLDAAKRAYD 60 (438)
T ss_pred EEEEecccccchHHHHHHhhcCCceEEEEecccchHHHHHHH
Confidence 79999999999999999886 588866 45899887766544
No 454
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=96.11 E-value=0.05 Score=48.58 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=70.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|.+||+|..|..++++|+..|. .++++|.+.-....+... |-..+....+.+. +.|+-+..... ..
T Consensus 22 ~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~~~e--~~ 99 (425)
T cd01493 22 HVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATCELLQELNPDVNGSAVEE--SP 99 (425)
T ss_pred eEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHHHHHHHHCCCCEEEEEec--cc
Confidence 69999999999999999999997 699998664333233211 2111111122222 45665555533 12
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCCCh
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSGSK 124 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g~~ 124 (226)
.+++. .....+..-.+||. +.........+.+.+.+.++.++.+-..|.-
T Consensus 100 ~~ll~---~~~~f~~~fdiVI~-t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~ 149 (425)
T cd01493 100 EALLD---NDPSFFSQFTVVIA-TNLPESTLLRLADVLWSANIPLLYVRSYGLY 149 (425)
T ss_pred chhhh---hHHHHhcCCCEEEE-CCCCHHHHHHHHHHHHHcCCCEEEEecccCE
Confidence 22221 01122334456665 4556677788999999999999888776643
No 455
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.026 Score=53.31 Aligned_cols=108 Identities=19% Similarity=0.208 Sum_probs=70.1
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHC--------CCc-ccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAH--------GAT-VGGSPAEVIKKCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~--------g~~-~~~s~~~~~~~advvi~~~p~~~~~~ 71 (226)
+|-|.|+|..|..||+|+.-+|. .|+++|..+-....|..+ |.. ...+...+++=-+.|-+.+-+....+
T Consensus 39 ~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~as~~~LaeLN~yV~V~v~t~~~~~ 118 (1013)
T KOG2012|consen 39 NVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEASVEKLAELNNYVPVVVLTGPLTE 118 (1013)
T ss_pred cEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHHHHHHHHHhhcceeeEEecCcccH
Confidence 58899999999999999999996 599999988887777553 222 12222333322233333332323333
Q ss_pred HHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPV 120 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv 120 (226)
+.+ ..=++|| .+..+.+...++.+.++++|+.|+.+-+
T Consensus 119 e~L----------~~FqvVV-lt~~~le~q~~i~~fch~~~i~fi~ad~ 156 (1013)
T KOG2012|consen 119 EFL----------SDFQVVV-LTDASLEEQLKINDFCHSHGIAFIAADT 156 (1013)
T ss_pred HHH----------hCCcEEE-EecCchHHHHHHHHHHHhcCeEEEEecc
Confidence 333 1223444 4445577888999999999998888753
No 456
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=96.09 E-value=0.019 Score=49.61 Aligned_cols=64 Identities=23% Similarity=0.285 Sum_probs=45.5
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC-----CCcc-------cCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH-----GATV-------GGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-----g~~~-------~~s~~~~~~~advvi~~~ 64 (226)
|+|.|.| .|.+|+.+++.|+++|++|++.+|++++.+.+... ++.. .....+++++.|+||-+.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A 87 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDEAVKGCDGVFHVA 87 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHHHHcCCCEEEECC
Confidence 6899998 59999999999999999999998887765544321 1111 112345566788877765
No 457
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.08 E-value=0.057 Score=45.22 Aligned_cols=107 Identities=14% Similarity=0.111 Sum_probs=62.7
Q ss_pred eEEEEecChhHHHHHHHHHhCC-CeEEEEcCCchhHHHHHHC--------CCcccCCHHHHhh--hCCeEEEecCC---H
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG-FKVTVWNRTLSKCDELVAH--------GATVGGSPAEVIK--KCTITIGMLAD---P 67 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G-~~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~--~advvi~~~p~---~ 67 (226)
+|.|||+|.+|+.+|.+|++.| .+++++|.+.-....+..+ |-..+.-..+-+. +.++-+...+. +
T Consensus 32 ~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~ 111 (268)
T PRK15116 32 HICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVVDDFITP 111 (268)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEEecccCh
Confidence 6999999999999999999999 5799998765443333321 1111111122221 23444444432 1
Q ss_pred HHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 68 AAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 68 ~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+...+.+ . ..-.+|||+.- .+.....+.+.+.++++.++.+
T Consensus 112 e~~~~ll-------~--~~~D~VIdaiD-~~~~k~~L~~~c~~~~ip~I~~ 152 (268)
T PRK15116 112 DNVAEYM-------S--AGFSYVIDAID-SVRPKAALIAYCRRNKIPLVTT 152 (268)
T ss_pred hhHHHHh-------c--CCCCEEEEcCC-CHHHHHHHHHHHHHcCCCEEEE
Confidence 1122221 1 12357777755 3445667888888889888766
No 458
>PLN00016 RNA-binding protein; Provisional
Probab=96.08 E-value=0.075 Score=46.52 Aligned_cols=36 Identities=22% Similarity=0.406 Sum_probs=31.9
Q ss_pred CeEEEE----e-cChhHHHHHHHHHhCCCeEEEEcCCchhH
Q 027255 1 MEVGFL----G-LGIMGKAISMNLLRNGFKVTVWNRTLSKC 36 (226)
Q Consensus 1 m~IgvI----G-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~ 36 (226)
|+|.|+ | .|.+|+.+++.|+++||+|++.+|++...
T Consensus 53 ~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~ 93 (378)
T PLN00016 53 KKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPS 93 (378)
T ss_pred ceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcch
Confidence 479999 6 59999999999999999999999987653
No 459
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=96.06 E-value=0.025 Score=49.71 Aligned_cols=106 Identities=16% Similarity=0.162 Sum_probs=64.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch------------------hHHHHHHC-CCcccCCHHHHhhhCCeEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS------------------KCDELVAH-GATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~------------------~~~~l~~~-g~~~~~s~~~~~~~advvi 61 (226)
++|+|-|.|+.|...|+.|...|.+|++++-+.. +..++... |++..+..+-+.-+||+.+
T Consensus 208 ~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~~cDIl~ 287 (411)
T COG0334 208 ARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEVDCDILI 287 (411)
T ss_pred CEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccccCcEEc
Confidence 4799999999999999999999999988865555 33333332 4555555333445799887
Q ss_pred EecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEE
Q 027255 62 GMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFL 116 (226)
Q Consensus 62 ~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~l 116 (226)
-|--......+.. +.++. ++|+...+. |.+. +..+.+.++|+.|+
T Consensus 288 PcA~~n~I~~~na-------~~l~a-k~V~EgAN~-P~t~-eA~~i~~erGIl~~ 332 (411)
T COG0334 288 PCALENVITEDNA-------DQLKA-KIVVEGANG-PTTP-EADEILLERGILVV 332 (411)
T ss_pred ccccccccchhhH-------HHhhh-cEEEeccCC-CCCH-HHHHHHHHCCCEEc
Confidence 7654322222222 23322 266665543 3222 23344457888764
No 460
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.06 E-value=0.033 Score=49.49 Aligned_cols=85 Identities=18% Similarity=0.181 Sum_probs=58.0
Q ss_pred eEEEEec----------ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255 2 EVGFLGL----------GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~----------G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~ 71 (226)
+|+|+|+ -+-...+++.|.+.|.+|.+||+.-.... .. ....+.++.++++++|+|++++..++ .+
T Consensus 315 ~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~~~-~~ 390 (411)
T TIGR03026 315 TVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDHDE-FK 390 (411)
T ss_pred EEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCCHH-Hh
Confidence 6888888 34677899999999999999998643322 11 12235788899999999999998854 33
Q ss_pred HHhhcccccccccCCCcEEEec
Q 027255 72 SVVFDKGGVLEQICPGKGYIDM 93 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~ 93 (226)
+.-+ +.+.+.+ ...+|+|+
T Consensus 391 ~~~~--~~~~~~~-~~~~v~D~ 409 (411)
T TIGR03026 391 DLDL--EKIKDLM-KGKVVVDT 409 (411)
T ss_pred ccCH--HHHHHhc-CCCEEEeC
Confidence 3210 2333333 35578885
No 461
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.06 E-value=0.037 Score=46.78 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=64.9
Q ss_pred EEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHHHHhhcccccccc
Q 027255 4 GFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAALSVVFDKGGVLEQ 83 (226)
Q Consensus 4 gvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~~v~~~~~~l~~~ 83 (226)
.|-|.|..|..-|+.|...|..|++...+|=.+-...=.|.++ .+.+|++...|++++++-.- +++. ..-+..
T Consensus 218 Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V-~tm~ea~~e~difVTtTGc~----dii~--~~H~~~ 290 (434)
T KOG1370|consen 218 VVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEV-TTLEEAIREVDIFVTTTGCK----DIIT--GEHFDQ 290 (434)
T ss_pred EEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEe-eeHHHhhhcCCEEEEccCCc----chhh--HHHHHh
Confidence 3559999999999999999999999998876543333347665 46999999999999887542 2332 223466
Q ss_pred cCCCcEEEecCCCC
Q 027255 84 ICPGKGYIDMSTVD 97 (226)
Q Consensus 84 l~~g~ivvd~st~~ 97 (226)
++.+.|+.++.-..
T Consensus 291 mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 291 MKNDAIVCNIGHFD 304 (434)
T ss_pred CcCCcEEecccccc
Confidence 78889998887543
No 462
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=96.05 E-value=0.036 Score=49.58 Aligned_cols=110 Identities=17% Similarity=0.087 Sum_probs=64.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEE-EEcCC----------chhHHHHHH---C-------------CCcccCCHHHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVT-VWNRT----------LSKCDELVA---H-------------GATVGGSPAEV 53 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~-~~dr~----------~~~~~~l~~---~-------------g~~~~~s~~~~ 53 (226)
++|.|-|.|++|...|+.|.+.|.+|+ +.|.+ .+++..+.+ . +++..+ .++.
T Consensus 238 k~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~-~~~~ 316 (454)
T PTZ00079 238 KTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVP-GKKP 316 (454)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeC-CcCc
Confidence 478999999999999999999999987 77776 555533221 1 222222 2222
Q ss_pred h-hhCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEec
Q 027255 54 I-KKCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEA 118 (226)
Q Consensus 54 ~-~~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~ 118 (226)
+ -.||+.+-|-.......+.. ..+ .+.+..+|--....|.+. +-.+.+.++|+.|+..
T Consensus 317 ~~~~cDI~iPcA~~n~I~~~~a---~~l---~~~~ak~V~EgAN~p~t~-eA~~~L~~~GI~~~PD 375 (454)
T PTZ00079 317 WEVPCDIAFPCATQNEINLEDA---KLL---IKNGCKLVAEGANMPTTI-EATHLFKKNGVIFCPG 375 (454)
T ss_pred ccCCccEEEeccccccCCHHHH---HHH---HHcCCeEEEecCCCCCCH-HHHHHHHHCCcEEECh
Confidence 2 36898887764322111111 111 123444444444444444 4556778889888644
No 463
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=96.05 E-value=0.02 Score=53.00 Aligned_cols=66 Identities=17% Similarity=0.235 Sum_probs=48.4
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCc---------------------hhHHHHHHCCCcccC--------CHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTL---------------------SKCDELVAHGATVGG--------SPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~---------------------~~~~~l~~~g~~~~~--------s~~ 51 (226)
.+|.|||.|..|...|..|.+.|++|+++++.+ .+.+.+.+.|+.... +..
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~~~~~ 217 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGEDITLE 217 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCcCCHH
Confidence 379999999999999999999999999998642 234455666754311 233
Q ss_pred HHhhhCCeEEEecCC
Q 027255 52 EVIKKCTITIGMLAD 66 (226)
Q Consensus 52 ~~~~~advvi~~~p~ 66 (226)
+.-...|+||+++-.
T Consensus 218 ~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 218 QLEGEFDAVFVAIGA 232 (564)
T ss_pred HHHhhCCEEEEeeCC
Confidence 344568999999854
No 464
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=96.05 E-value=0.032 Score=44.97 Aligned_cols=38 Identities=24% Similarity=0.404 Sum_probs=33.3
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l 39 (226)
+|.|.|. |.+|..+++.|+++|++|++++|++++.+.+
T Consensus 7 ~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~ 45 (246)
T PRK05653 7 TALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEAL 45 (246)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 6888885 9999999999999999999999998775543
No 465
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.05 E-value=0.032 Score=45.51 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=34.0
Q ss_pred eEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
+|.|.| .|.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 6 ~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 45 (258)
T PRK12429 6 VALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAA 45 (258)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 577887 599999999999999999999999988776543
No 466
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=96.05 E-value=0.0068 Score=53.49 Aligned_cols=65 Identities=28% Similarity=0.397 Sum_probs=45.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH------HHHH--CCCcc-------cCCHHHHhh----hCCeE
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD------ELVA--HGATV-------GGSPAEVIK----KCTIT 60 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~------~l~~--~g~~~-------~~s~~~~~~----~advv 60 (226)
|+|.|+|. |.+|+.+++.|.++|++|++.+|++++.+ .+.. .++.. ..+..++++ .+|+|
T Consensus 61 ~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~l~~~~~~~~~~~D~V 140 (390)
T PLN02657 61 VTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKNGKEDTKKELPGAEVVFGDVTDADSLRKVLFSEGDPVDVV 140 (390)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccchhhHHhhhcCCceEEEeeCCCHHHHHHHHHHhCCCCcEE
Confidence 57889986 99999999999999999999999876432 1111 12221 123445555 48999
Q ss_pred EEecC
Q 027255 61 IGMLA 65 (226)
Q Consensus 61 i~~~p 65 (226)
|.|+.
T Consensus 141 i~~aa 145 (390)
T PLN02657 141 VSCLA 145 (390)
T ss_pred EECCc
Confidence 98763
No 467
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.036 Score=44.97 Aligned_cols=40 Identities=20% Similarity=0.180 Sum_probs=33.9
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
++|.|+|. |.+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 48 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELA 48 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 35778885 99999999999999999999999988766543
No 468
>PRK12828 short chain dehydrogenase; Provisional
Probab=96.03 E-value=0.058 Score=43.30 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=32.3
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDE 38 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~ 38 (226)
+|.|+|. |.+|..+++.|+++|++|++.+|++++..+
T Consensus 9 ~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~ 46 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQ 46 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHH
Confidence 5778875 999999999999999999999998876544
No 469
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=96.03 E-value=0.012 Score=38.59 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=27.8
Q ss_pred EEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255 5 FLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (226)
Q Consensus 5 vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~ 35 (226)
|||.|.-|...|..|.+.|++|+++++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~ 31 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRL 31 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCccc
Confidence 7999999999999999999999999988653
No 470
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.03 E-value=0.02 Score=56.17 Aligned_cols=65 Identities=15% Similarity=0.124 Sum_probs=49.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~ 51 (226)
+||+|||.|.-|...|..|++.||+|++|++.+. .++.+...|+++. -+.+
T Consensus 307 kkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~dit~~ 386 (944)
T PRK12779 307 PPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTATLE 386 (944)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEEeHH
Confidence 4799999999999999999999999999987642 1233455565531 2456
Q ss_pred HHhh-hCCeEEEecC
Q 027255 52 EVIK-KCTITIGMLA 65 (226)
Q Consensus 52 ~~~~-~advvi~~~p 65 (226)
++.+ +.|.||+++-
T Consensus 387 ~l~~~~yDAV~LAtG 401 (944)
T PRK12779 387 DLKAAGFWKIFVGTG 401 (944)
T ss_pred HhccccCCEEEEeCC
Confidence 6654 5899999874
No 471
>PRK07877 hypothetical protein; Provisional
Probab=96.03 E-value=0.047 Score=51.84 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=65.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC--eEEEEcCCchhHHHHHHC-------CCcccCCHHHHhh--hCCeEEEecCCHHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF--KVTVWNRTLSKCDELVAH-------GATVGGSPAEVIK--KCTITIGMLADPAAA 70 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~--~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~--~advvi~~~p~~~~~ 70 (226)
+|+|||+| .|+.+|..|++.|. +++++|.+.=....++.. |...+...++-+. +.++-|.+.+..- .
T Consensus 109 ~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~~~i-~ 186 (722)
T PRK07877 109 RIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFTDGL-T 186 (722)
T ss_pred CEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEeccC-C
Confidence 79999999 89999999999994 788888654333233322 2222222222222 2455555554311 1
Q ss_pred HHHhhcccccccccCCCcEEEecCCCCHHHHHHHHHHHHhcCCcEEecCCCC
Q 027255 71 LSVVFDKGGVLEQICPGKGYIDMSTVDHETSIKISRAITSKGGHFLEAPVSG 122 (226)
Q Consensus 71 ~~v~~~~~~l~~~l~~g~ivvd~st~~~~~~~~l~~~~~~~g~~~ld~pv~g 122 (226)
.+.+ +.+ +..-.+|||++-. ...-..+.+.+.++++.++.+...+
T Consensus 187 ~~n~---~~~---l~~~DlVvD~~D~-~~~R~~ln~~a~~~~iP~i~~~~~~ 231 (722)
T PRK07877 187 EDNV---DAF---LDGLDVVVEECDS-LDVKVLLREAARARRIPVLMATSDR 231 (722)
T ss_pred HHHH---HHH---hcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1112 122 2234678888765 4555566777777888877766433
No 472
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=96.02 E-value=0.018 Score=50.47 Aligned_cols=62 Identities=16% Similarity=0.292 Sum_probs=43.7
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhH-HHHHHCCCc-ccCC---HHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKC-DELVAHGAT-VGGS---PAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~-~~l~~~g~~-~~~s---~~~~~~~advvi~ 62 (226)
++|||||.|..|..|+....+.|++|+++|.++... ..+...-+. ...+ +.++++.+|+|..
T Consensus 3 ~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 3 KTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 469999999999999999999999999999886542 222222111 1223 4456778887643
No 473
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=96.02 E-value=0.01 Score=49.49 Aligned_cols=58 Identities=22% Similarity=0.398 Sum_probs=45.7
Q ss_pred ecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhh-hCCeEEEec
Q 027255 7 GLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIK-KCTITIGML 64 (226)
Q Consensus 7 G~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~advvi~~~ 64 (226)
|.|.+|+++...|.+.||+|++..|++.+.+......+......++... .+|+||--.
T Consensus 6 gTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavINLA 64 (297)
T COG1090 6 GTGLIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVINLA 64 (297)
T ss_pred cccchhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEECC
Confidence 6799999999999999999999999999877655444444455566655 699888654
No 474
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.039 Score=46.55 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=33.9
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
+|-|.|. |.+|..+|+.|+++|++|++.+|++++.+.+.
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~ 81 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVA 81 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5777776 99999999999999999999999988776654
No 475
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.033 Score=44.94 Aligned_cols=39 Identities=28% Similarity=0.307 Sum_probs=33.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
+|.|+|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 8 ~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 47 (237)
T PRK07326 8 VALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAA 47 (237)
T ss_pred EEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHH
Confidence 5778875 99999999999999999999999988766553
No 476
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=96.00 E-value=0.022 Score=51.04 Aligned_cols=65 Identities=11% Similarity=0.162 Sum_probs=47.8
Q ss_pred CeEEEEecChhHH-HHHHHHHhC-----CCeEEEEcCCchhHHHHHH--------CC----CcccCCHHHHhhhCCeEEE
Q 027255 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRTLSKCDELVA--------HG----ATVGGSPAEVIKKCTITIG 62 (226)
Q Consensus 1 m~IgvIG~G~mG~-~~A~~l~~~-----G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~~~~~~advvi~ 62 (226)
|||+|||.|+.=+ .+...|... +-+|.++|.++++.+.... .| +..+++.++++++||.||+
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfVi~ 80 (437)
T cd05298 1 FKIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEAVKILFKENYPEIKFVYTTDPEEAFTDADFVFA 80 (437)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEEEE
Confidence 8999999998522 344445433 3579999999988765322 13 4568899999999999999
Q ss_pred ecC
Q 027255 63 MLA 65 (226)
Q Consensus 63 ~~p 65 (226)
..-
T Consensus 81 ~ir 83 (437)
T cd05298 81 QIR 83 (437)
T ss_pred Eee
Confidence 874
No 477
>PRK05884 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.017 Score=46.69 Aligned_cols=41 Identities=22% Similarity=0.244 Sum_probs=36.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
||+.|.|. |.+|+.+++.|++.|++|++.+|++++.+.+.+
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 78889987 899999999999999999999999888766543
No 478
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=95.99 E-value=0.022 Score=55.04 Aligned_cols=119 Identities=14% Similarity=0.158 Sum_probs=70.7
Q ss_pred CeEEEEecChhHHHHHHHHHhC-------CCeEEEE---cCCchhH-------HHHHHC---CCcc--cCCHHHHhh---
Q 027255 1 MEVGFLGLGIMGKAISMNLLRN-------GFKVTVW---NRTLSKC-------DELVAH---GATV--GGSPAEVIK--- 55 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~-------G~~V~~~---dr~~~~~-------~~l~~~---g~~~--~~s~~~~~~--- 55 (226)
++|+++|+|.+|+.+.+.|.++ |.++.+. +++.... ..+... .... .....+.+.
T Consensus 466 ~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 545 (819)
T PRK09436 466 LDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNWREELAEAGEPFDLDRLIRLVKEYH 545 (819)
T ss_pred ccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHHHHHHhhccCCCCHHHHHHHHhhcC
Confidence 5799999999999999998653 4554432 4332211 111110 0000 111223333
Q ss_pred -hCCeEEEecCCHHHHHHHhhcccccccccCCCcEEEecCCCCH----HHHHHHHHHHHhcCCcEE-ecCCCCChHh
Q 027255 56 -KCTITIGMLADPAAALSVVFDKGGVLEQICPGKGYIDMSTVDH----ETSIKISRAITSKGGHFL-EAPVSGSKQP 126 (226)
Q Consensus 56 -~advvi~~~p~~~~~~~v~~~~~~l~~~l~~g~ivvd~st~~~----~~~~~l~~~~~~~g~~~l-d~pv~g~~~~ 126 (226)
..++|+-|+++.. ....+ ...+..|..||..+.... ....++.+..+++|+.|. ++.|.|+-|-
T Consensus 546 ~~~~vvvd~t~~~~-~~~~~------~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~yeatV~~giPi 615 (819)
T PRK09436 546 LLNPVIVDCTSSQA-VADQY------ADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFLYETNVGAGLPV 615 (819)
T ss_pred CCCCEEEECCCChH-HHHHH------HHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEEEeeeeccccch
Confidence 2488999998744 33333 366778888888776422 366778888888888754 5667666543
No 479
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.037 Score=44.84 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=33.1
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
++.|.|. |.+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 47 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALA 47 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 4677775 99999999999999999999999987765543
No 480
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=95.98 E-value=0.021 Score=50.91 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=47.4
Q ss_pred CeEEEEecChhHH-HHHHHHHhC-----CCeEEEEcCC-chhHHHHH--------HCC----CcccCCHHHHhhhCCeEE
Q 027255 1 MEVGFLGLGIMGK-AISMNLLRN-----GFKVTVWNRT-LSKCDELV--------AHG----ATVGGSPAEVIKKCTITI 61 (226)
Q Consensus 1 m~IgvIG~G~mG~-~~A~~l~~~-----G~~V~~~dr~-~~~~~~l~--------~~g----~~~~~s~~~~~~~advvi 61 (226)
|||.|||.|+.-+ .+.+.|+.. +-+|.++|++ +++.+... +.| +..+.+.+++++++|+||
T Consensus 1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~al~gadfVi 80 (419)
T cd05296 1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGALAKRMVKKAGLPIKVHLTTDRREALEGADFVF 80 (419)
T ss_pred CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHHHhCCCCEEE
Confidence 8999999999744 344555542 3579999999 78765422 123 345789999999999999
Q ss_pred EecC
Q 027255 62 GMLA 65 (226)
Q Consensus 62 ~~~p 65 (226)
++.-
T Consensus 81 ~~~~ 84 (419)
T cd05296 81 TQIR 84 (419)
T ss_pred EEEe
Confidence 9863
No 481
>PRK07825 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.048 Score=45.16 Aligned_cols=39 Identities=21% Similarity=0.132 Sum_probs=34.1
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
+|.|.|. |.+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 7 ~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~ 46 (273)
T PRK07825 7 VVAITGGARGIGLATARALAALGARVAIGDLDEALAKETA 46 (273)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 5778876 99999999999999999999999998876654
No 482
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=95.96 E-value=0.029 Score=50.54 Aligned_cols=66 Identities=24% Similarity=0.295 Sum_probs=51.6
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh---------------------HHHHHHCCCcc--------cCCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK---------------------CDELVAHGATV--------GGSPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~---------------------~~~l~~~g~~~--------~~s~~ 51 (226)
++|+|||.|.-|..-|..|+++||.|++|++.+.- ++.+.+.|+++ .-+.+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~~ 203 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITLE 203 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCHH
Confidence 47999999999999999999999999999876542 23344445332 34788
Q ss_pred HHhhhCCeEEEecCC
Q 027255 52 EVIKKCTITIGMLAD 66 (226)
Q Consensus 52 ~~~~~advvi~~~p~ 66 (226)
++.+..|.|++++..
T Consensus 204 ~L~~e~Dav~l~~G~ 218 (457)
T COG0493 204 ELLKEYDAVFLATGA 218 (457)
T ss_pred HHHHhhCEEEEeccc
Confidence 888888999999854
No 483
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=95.95 E-value=0.031 Score=48.08 Aligned_cols=28 Identities=25% Similarity=0.507 Sum_probs=23.4
Q ss_pred eEEEEecChhHHHHHHHHHhCC----CeEEEE
Q 027255 2 EVGFLGLGIMGKAISMNLLRNG----FKVTVW 29 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G----~~V~~~ 29 (226)
||||+|+|.+|+.+.+.|.+.+ ++|...
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaI 32 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVAL 32 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEE
Confidence 6999999999999999988753 676654
No 484
>PRK12829 short chain dehydrogenase; Provisional
Probab=95.93 E-value=0.043 Score=44.97 Aligned_cols=41 Identities=22% Similarity=0.233 Sum_probs=34.7
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
++|.|+|. |.+|..+++.|+++|++|++.+|+++..+.+.+
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~ 53 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAA 53 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 46788876 999999999999999999999999877665543
No 485
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.92 E-value=0.033 Score=50.36 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=48.3
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch---------------------hHHHHHHCCCccc--------CCHH
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS---------------------KCDELVAHGATVG--------GSPA 51 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~---------------------~~~~l~~~g~~~~--------~s~~ 51 (226)
++|.|||.|..|...|..|.+.|++|+++++.+. ..+.+.+.|+.+. .+..
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~~~~ 223 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDITAE 223 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcCCHH
Confidence 4799999999999999999999999999987642 1233455565431 1344
Q ss_pred HHhhhCCeEEEecCC
Q 027255 52 EVIKKCTITIGMLAD 66 (226)
Q Consensus 52 ~~~~~advvi~~~p~ 66 (226)
+.....|.||+++-.
T Consensus 224 ~~~~~~d~vvlAtGa 238 (471)
T PRK12810 224 ELLAEYDAVFLGTGA 238 (471)
T ss_pred HHHhhCCEEEEecCC
Confidence 555678999998743
No 486
>PLN02214 cinnamoyl-CoA reductase
Probab=95.92 E-value=0.024 Score=48.93 Aligned_cols=65 Identities=20% Similarity=0.139 Sum_probs=46.0
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHH-----HHHHC--CCc-------ccCCHHHHhhhCCeEEEecC
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCD-----ELVAH--GAT-------VGGSPAEVIKKCTITIGMLA 65 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~-----~l~~~--g~~-------~~~s~~~~~~~advvi~~~p 65 (226)
|+|.|.|. |.+|+.+++.|+++||+|++..|+.+... .+... .+. -..+..++++.+|+||-+..
T Consensus 11 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 11 KTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence 46889987 99999999999999999999998766421 11111 111 12234566778999988763
No 487
>PRK06057 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.065 Score=43.89 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=34.0
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
+|-|+|. |.+|..+++.|+++|++|++.+|++.+.+.+.
T Consensus 9 ~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~ 48 (255)
T PRK06057 9 VAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAA 48 (255)
T ss_pred EEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 5788888 99999999999999999999999987765543
No 488
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=95.90 E-value=0.045 Score=47.95 Aligned_cols=87 Identities=14% Similarity=0.069 Sum_probs=59.6
Q ss_pred eEEEEecC----------hhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCcccCCHHHHhhhCCeEEEecCCHHHHH
Q 027255 2 EVGFLGLG----------IMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVGGSPAEVIKKCTITIGMLADPAAAL 71 (226)
Q Consensus 2 ~IgvIG~G----------~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~advvi~~~p~~~~~~ 71 (226)
+|||.|+- .-...++..|.+.|.+|.+||+....-......++..+.++.++++++|++++++.+ +.++
T Consensus 312 ~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew-~ef~ 390 (414)
T COG1004 312 TIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEW-DEFR 390 (414)
T ss_pred EEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccH-HHHh
Confidence 56666663 235678899999999999999754332222212578899999999999999999966 4555
Q ss_pred HHhhcccccccccCCCcEEEecC
Q 027255 72 SVVFDKGGVLEQICPGKGYIDMS 94 (226)
Q Consensus 72 ~v~~~~~~l~~~l~~g~ivvd~s 94 (226)
++-+ +.+ +-++.+|+|.-
T Consensus 391 ~~d~--~~~---~m~~~~v~DgR 408 (414)
T COG1004 391 DLDF--EKL---LMKTPVVIDGR 408 (414)
T ss_pred ccCh--hhh---hccCCEEEecc
Confidence 5431 112 33677777743
No 489
>PRK07774 short chain dehydrogenase; Provisional
Probab=95.89 E-value=0.044 Score=44.60 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=33.2
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHH
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDEL 39 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l 39 (226)
++|-|.|. |.+|..+++.|++.|++|++.+|+++..+.+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~ 46 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERV 46 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 35778886 9999999999999999999999987765444
No 490
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.87 E-value=0.052 Score=46.16 Aligned_cols=51 Identities=25% Similarity=0.315 Sum_probs=45.0
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCCcccCCHHH
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGATVGGSPAE 52 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~~ 52 (226)
+++|+|+|.+|.+.+......|. +++..|.|+++-+..++.|++-+-++.+
T Consensus 195 tvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d 246 (375)
T KOG0022|consen 195 TVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKD 246 (375)
T ss_pred EEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhh
Confidence 68999999999999999988885 6999999999999999999877666653
No 491
>PLN02650 dihydroflavonol-4-reductase
Probab=95.87 E-value=0.032 Score=48.19 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=46.1
Q ss_pred CeEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----C-----------CcccCCHHHHhhhCCeEEEec
Q 027255 1 MEVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----G-----------ATVGGSPAEVIKKCTITIGML 64 (226)
Q Consensus 1 m~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g-----------~~~~~s~~~~~~~advvi~~~ 64 (226)
++|.|.|. |.+|+.+++.|++.|++|++.+|+++..+.+... + +.-..+..++++++|+||-+.
T Consensus 6 k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 6 ETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred CEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 47888885 9999999999999999999998887655433211 1 111224556777889888765
No 492
>PRK12320 hypothetical protein; Provisional
Probab=95.87 E-value=0.017 Score=54.50 Aligned_cols=63 Identities=13% Similarity=0.168 Sum_probs=45.6
Q ss_pred CeEEEEe-cChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCCccc------CCHHHHhhhCCeEEEecCC
Q 027255 1 MEVGFLG-LGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGATVG------GSPAEVIKKCTITIGMLAD 66 (226)
Q Consensus 1 m~IgvIG-~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~------~s~~~~~~~advvi~~~p~ 66 (226)
|||.|.| .|.+|+.+++.|.+.||+|++.+|++... ...+++.. ....+++.++|+||-+.+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~---~~~~ve~v~~Dl~d~~l~~al~~~D~VIHLAa~ 70 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA---LDPRVDYVCASLRNPVLQELAGEADAVIHLAPV 70 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc---ccCCceEEEccCCCHHHHHHhcCCCEEEEcCcc
Confidence 8999999 69999999999999999999999875432 11122111 1234555678998888753
No 493
>PLN02740 Alcohol dehydrogenase-like
Probab=95.85 E-value=0.092 Score=45.99 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=37.5
Q ss_pred eEEEEecChhHHHHHHHHHhCCC-eEEEEcCCchhHHHHHHCCC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGF-KVTVWNRTLSKCDELVAHGA 44 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~-~V~~~dr~~~~~~~l~~~g~ 44 (226)
+|.|+|.|.+|...++.+...|. +|++.++++++.+.+.+.|+
T Consensus 201 ~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 201 SVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58899999999999888888898 59999999999888877665
No 494
>PRK08265 short chain dehydrogenase; Provisional
Probab=95.85 E-value=0.059 Score=44.43 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=33.7
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
++-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.+
T Consensus 8 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 48 (261)
T PRK08265 8 VAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAA 48 (261)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 4667775 999999999999999999999999887666543
No 495
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=95.84 E-value=0.013 Score=49.82 Aligned_cols=34 Identities=32% Similarity=0.523 Sum_probs=29.6
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchh
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSK 35 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~ 35 (226)
+|.|||.|.-|..+|..|+++|++|+++++.+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhcccc
Confidence 6899999999999999999999999999987663
No 496
>PRK07538 hypothetical protein; Provisional
Probab=95.84 E-value=0.012 Score=52.15 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=32.1
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCch
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLS 34 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~ 34 (226)
|+|.|||.|..|..+|..|.++|++|+++++.++
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCc
Confidence 7999999999999999999999999999998764
No 497
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=95.83 E-value=0.067 Score=44.65 Aligned_cols=40 Identities=20% Similarity=0.328 Sum_probs=36.1
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELVA 41 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~ 41 (226)
++-|-|+ +.+|..+|+.|+++||+|++..|+.++++++++
T Consensus 8 ~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~ 48 (265)
T COG0300 8 TALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAK 48 (265)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHH
Confidence 4667787 899999999999999999999999999998865
No 498
>PRK06139 short chain dehydrogenase; Provisional
Probab=95.82 E-value=0.047 Score=47.08 Aligned_cols=39 Identities=18% Similarity=0.223 Sum_probs=33.8
Q ss_pred eEEEEec-ChhHHHHHHHHHhCCCeEEEEcCCchhHHHHH
Q 027255 2 EVGFLGL-GIMGKAISMNLLRNGFKVTVWNRTLSKCDELV 40 (226)
Q Consensus 2 ~IgvIG~-G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~ 40 (226)
+|-|.|. |.+|..+|+.|++.|++|++.+|++++.+++.
T Consensus 9 ~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~ 48 (330)
T PRK06139 9 VVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVA 48 (330)
T ss_pred EEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH
Confidence 4667777 89999999999999999999999998876654
No 499
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=95.81 E-value=0.061 Score=46.06 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=36.8
Q ss_pred eEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHCCC
Q 027255 2 EVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAHGA 44 (226)
Q Consensus 2 ~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~ 44 (226)
+|.|.|.|.+|..+++.+...|.+|++.++++++.+.+.+.|+
T Consensus 172 ~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 172 RVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 5788999999999888888889999999999888877766664
No 500
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=95.81 E-value=0.18 Score=41.34 Aligned_cols=86 Identities=20% Similarity=0.241 Sum_probs=59.0
Q ss_pred CeEEEEecChhHHHHHHHHHhCCCeEEEEcCCchhHHHHHHC----CCc---ccCCHHHHhh---hCCeEEEe-----cC
Q 027255 1 MEVGFLGLGIMGKAISMNLLRNGFKVTVWNRTLSKCDELVAH----GAT---VGGSPAEVIK---KCTITIGM-----LA 65 (226)
Q Consensus 1 m~IgvIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~~~~~---~advvi~~-----~p 65 (226)
++|.=|||| |..++..+++.|.+|+..|.+++.++..+.+ |+. ...+.+++.+ .-|+|+++ +|
T Consensus 61 ~~vLDvGCG--gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~ 138 (243)
T COG2227 61 LRVLDVGCG--GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP 138 (243)
T ss_pred CeEEEecCC--ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence 356778887 4589999999999999999999988776533 443 2445556655 57887765 56
Q ss_pred CHHHHHHHhhcccccccccCCCcEEEecC
Q 027255 66 DPAAALSVVFDKGGVLEQICPGKGYIDMS 94 (226)
Q Consensus 66 ~~~~~~~v~~~~~~l~~~l~~g~ivvd~s 94 (226)
+++.+ + ......++||.+++..+
T Consensus 139 dp~~~---~---~~c~~lvkP~G~lf~ST 161 (243)
T COG2227 139 DPESF---L---RACAKLVKPGGILFLST 161 (243)
T ss_pred CHHHH---H---HHHHHHcCCCcEEEEec
Confidence 65543 3 33456677887766544
Done!