Query 027256
Match_columns 226
No_of_seqs 102 out of 1056
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 07:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027256.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027256hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1444 Nucleotide-sugar trans 100.0 4.5E-31 9.7E-36 217.2 17.0 216 1-223 91-307 (314)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 1.9E-29 4E-34 213.6 18.7 215 3-224 81-301 (302)
3 PTZ00343 triose or hexose phos 100.0 1.8E-28 4E-33 211.3 22.0 213 4-218 131-350 (350)
4 PF08449 UAA: UAA transporter 100.0 3E-28 6.5E-33 206.3 19.2 213 2-222 79-303 (303)
5 KOG1441 Glucose-6-phosphate/ph 99.9 6.9E-28 1.5E-32 202.0 8.6 216 2-224 98-315 (316)
6 PRK11453 O-acetylserine/cystei 99.9 2.1E-23 4.5E-28 176.4 22.8 208 5-219 77-290 (299)
7 COG5070 VRG4 Nucleotide-sugar 99.9 4.5E-25 9.7E-30 172.7 11.1 214 1-223 82-303 (309)
8 PRK11272 putative DMT superfam 99.9 1.1E-22 2.4E-27 171.5 22.1 200 5-220 87-289 (292)
9 TIGR00950 2A78 Carboxylate/Ami 99.9 1.8E-22 3.8E-27 167.0 19.6 195 3-211 63-259 (260)
10 KOG1580 UDP-galactose transpor 99.9 1.3E-23 2.9E-28 165.8 9.2 204 1-212 99-309 (337)
11 PLN00411 nodulin MtN21 family 99.9 1E-21 2.2E-26 169.3 21.8 206 3-221 94-333 (358)
12 PRK11689 aromatic amino acid e 99.9 1.7E-21 3.7E-26 164.5 21.9 195 9-222 87-293 (295)
13 KOG1442 GDP-fucose transporter 99.9 1.9E-24 4.1E-29 173.8 2.3 213 3-222 118-333 (347)
14 PRK15430 putative chlorampheni 99.9 1E-20 2.3E-25 159.7 21.1 199 2-217 88-286 (296)
15 PRK10532 threonine and homoser 99.9 4E-20 8.8E-25 155.9 21.0 196 3-221 87-286 (293)
16 KOG1581 UDP-galactose transpor 99.8 3.9E-20 8.4E-25 151.1 14.9 211 2-220 98-317 (327)
17 KOG1443 Predicted integral mem 99.8 8.8E-20 1.9E-24 149.1 13.6 209 4-216 101-315 (349)
18 PF06027 DUF914: Eukaryotic pr 99.8 2.1E-19 4.6E-24 152.5 16.6 206 2-220 94-309 (334)
19 TIGR03340 phn_DUF6 phosphonate 99.8 5.7E-19 1.2E-23 148.1 16.1 199 3-213 79-280 (281)
20 PF03151 TPT: Triose-phosphate 99.8 5.1E-19 1.1E-23 135.1 14.3 147 68-216 1-153 (153)
21 COG0697 RhaT Permeases of the 99.8 1.7E-17 3.6E-22 138.4 21.1 197 3-217 86-288 (292)
22 KOG1583 UDP-N-acetylglucosamin 99.8 1.1E-18 2.4E-23 140.9 9.5 206 3-218 80-316 (330)
23 KOG1582 UDP-galactose transpor 99.8 8.1E-18 1.8E-22 135.6 13.3 209 4-220 123-336 (367)
24 TIGR00776 RhaT RhaT L-rhamnose 99.7 1.4E-15 3.1E-20 128.1 18.0 193 2-217 74-289 (290)
25 TIGR00688 rarD rarD protein. T 99.7 1.4E-15 3E-20 125.9 17.3 169 3-191 86-255 (256)
26 PF04142 Nuc_sug_transp: Nucle 99.7 2.7E-15 5.9E-20 123.0 17.4 190 5-206 35-243 (244)
27 KOG2234 Predicted UDP-galactos 99.7 9.9E-15 2.1E-19 122.4 18.8 206 6-223 111-329 (345)
28 KOG2765 Predicted membrane pro 99.6 2.4E-15 5.1E-20 126.4 12.7 205 2-217 174-391 (416)
29 KOG4510 Permease of the drug/m 99.6 9.3E-17 2E-21 129.3 3.9 200 4-218 114-327 (346)
30 COG2962 RarD Predicted permeas 99.6 2.3E-13 4.9E-18 111.5 21.9 196 7-221 92-288 (293)
31 COG5006 rhtA Threonine/homoser 99.6 6.2E-14 1.3E-18 112.3 15.5 197 4-222 88-288 (292)
32 TIGR00803 nst UDP-galactose tr 99.5 1.6E-13 3.4E-18 111.3 12.9 189 10-214 1-222 (222)
33 KOG3912 Predicted integral mem 99.4 8.9E-12 1.9E-16 101.4 12.8 203 6-217 105-335 (372)
34 COG2510 Predicted membrane pro 99.2 1.8E-10 3.9E-15 83.3 10.4 134 69-215 5-138 (140)
35 PF00892 EamA: EamA-like trans 99.2 2.8E-10 6.1E-15 83.0 10.2 123 78-215 2-125 (126)
36 KOG2766 Predicted membrane pro 99.0 7.2E-11 1.6E-15 95.0 0.1 197 4-218 95-301 (336)
37 PRK15430 putative chlorampheni 99.0 5.2E-08 1.1E-12 82.3 16.2 140 64-215 5-144 (296)
38 TIGR03340 phn_DUF6 phosphonate 98.9 4.2E-08 9E-13 82.3 14.9 133 69-216 3-135 (281)
39 TIGR00688 rarD rarD protein. T 98.9 6.4E-08 1.4E-12 80.0 15.5 138 67-214 2-140 (256)
40 KOG4314 Predicted carbohydrate 98.9 1.2E-08 2.7E-13 79.4 9.2 197 3-215 69-275 (290)
41 PLN00411 nodulin MtN21 family 98.7 1.3E-06 2.8E-11 75.8 16.7 139 66-216 12-156 (358)
42 PF06800 Sugar_transport: Suga 98.7 2.4E-06 5.3E-11 70.6 16.5 172 21-212 80-267 (269)
43 PF13536 EmrE: Multidrug resis 98.6 5.8E-08 1.2E-12 70.4 4.1 61 3-64 51-111 (113)
44 PF13536 EmrE: Multidrug resis 98.5 3.6E-06 7.7E-11 60.9 11.5 103 113-219 6-109 (113)
45 PRK02971 4-amino-4-deoxy-L-ara 98.4 2.4E-06 5.1E-11 63.3 8.8 122 67-220 2-126 (129)
46 PF05653 Mg_trans_NIPA: Magnes 98.3 4.2E-06 9.1E-11 70.9 9.1 56 3-58 66-121 (300)
47 COG2962 RarD Predicted permeas 98.3 3E-05 6.5E-10 64.1 13.6 140 65-217 5-145 (293)
48 TIGR00950 2A78 Carboxylate/Ami 98.3 1.7E-05 3.7E-10 65.3 12.0 104 101-216 15-119 (260)
49 PF00892 EamA: EamA-like trans 98.2 1.4E-06 3E-11 63.3 4.5 56 3-58 70-125 (126)
50 PRK15051 4-amino-4-deoxy-L-ara 98.2 1.7E-06 3.7E-11 62.5 4.3 57 2-58 52-108 (111)
51 PTZ00343 triose or hexose phos 98.2 0.00014 3.1E-09 63.0 16.8 138 65-215 47-185 (350)
52 PRK11272 putative DMT superfam 98.2 9.7E-05 2.1E-09 62.3 15.2 129 70-216 11-141 (292)
53 TIGR00817 tpt Tpt phosphate/ph 98.1 0.0002 4.3E-09 60.6 15.8 124 77-214 12-135 (302)
54 PRK11689 aromatic amino acid e 98.1 0.00017 3.7E-09 60.9 14.8 129 67-215 4-136 (295)
55 PRK15051 4-amino-4-deoxy-L-ara 98.0 6.4E-05 1.4E-09 54.2 9.2 63 153-215 45-108 (111)
56 PRK11453 O-acetylserine/cystei 98.0 0.00038 8.3E-09 58.8 14.7 124 70-216 7-132 (299)
57 PF08449 UAA: UAA transporter 97.8 0.00097 2.1E-08 56.5 14.1 128 80-221 13-141 (303)
58 TIGR00776 RhaT RhaT L-rhamnose 97.8 0.00063 1.4E-08 57.4 12.8 132 68-218 2-138 (290)
59 COG2510 Predicted membrane pro 97.7 8.8E-06 1.9E-10 59.2 0.2 56 3-58 83-138 (140)
60 PRK02971 4-amino-4-deoxy-L-ara 97.7 5.7E-05 1.2E-09 56.0 4.3 59 2-60 63-123 (129)
61 COG0697 RhaT Permeases of the 97.7 0.0034 7.4E-08 51.9 15.5 140 66-220 6-147 (292)
62 PRK10452 multidrug efflux syst 97.6 0.00039 8.5E-09 50.7 8.2 67 152-218 37-105 (120)
63 PRK09541 emrE multidrug efflux 97.6 0.00051 1.1E-08 49.4 8.2 67 152-218 37-105 (110)
64 PF04142 Nuc_sug_transp: Nucle 97.6 0.00034 7.3E-09 57.6 7.7 77 144-220 17-93 (244)
65 PF06027 DUF914: Eukaryotic pr 97.5 0.0025 5.4E-08 54.7 12.7 70 148-217 83-152 (334)
66 KOG2922 Uncharacterized conser 97.4 0.0003 6.5E-09 59.1 5.9 56 3-58 80-135 (335)
67 PRK10452 multidrug efflux syst 97.3 0.00031 6.7E-09 51.3 4.2 58 2-59 45-103 (120)
68 PF04657 DUF606: Protein of un 97.2 0.03 6.5E-07 41.9 14.3 130 69-212 3-137 (138)
69 COG2076 EmrE Membrane transpor 97.2 0.0035 7.6E-08 44.5 8.3 64 154-217 39-104 (106)
70 PRK09541 emrE multidrug efflux 97.2 0.00058 1.3E-08 49.1 4.4 57 3-59 46-103 (110)
71 PF06800 Sugar_transport: Suga 97.0 0.01 2.2E-07 49.4 10.8 114 102-223 10-129 (269)
72 PRK10650 multidrug efflux syst 97.0 0.036 7.9E-07 39.7 12.0 63 152-214 42-106 (109)
73 PRK11431 multidrug efflux syst 97.0 0.0012 2.6E-08 47.1 4.4 56 3-58 45-101 (105)
74 PRK13499 rhamnose-proton sympo 96.9 0.026 5.6E-07 48.7 12.8 142 66-218 6-155 (345)
75 PRK10650 multidrug efflux syst 96.9 0.0015 3.3E-08 46.8 4.3 54 4-57 52-106 (109)
76 PRK11431 multidrug efflux syst 96.9 0.013 2.7E-07 41.8 8.9 65 152-216 36-102 (105)
77 PRK10532 threonine and homoser 96.9 0.058 1.2E-06 45.5 14.5 105 66-188 11-115 (293)
78 KOG2234 Predicted UDP-galactos 96.9 0.056 1.2E-06 46.2 13.9 141 71-216 19-164 (345)
79 PRK13499 rhamnose-proton sympo 96.8 0.29 6.2E-06 42.3 19.0 209 6-217 92-342 (345)
80 COG2076 EmrE Membrane transpor 96.6 0.0035 7.6E-08 44.5 4.4 56 5-60 48-104 (106)
81 PF05653 Mg_trans_NIPA: Magnes 96.6 0.021 4.5E-07 48.5 9.8 117 65-215 5-121 (300)
82 PF00893 Multi_Drug_Res: Small 96.6 0.0085 1.8E-07 41.7 6.2 54 154-207 38-93 (93)
83 PF03151 TPT: Triose-phosphate 96.5 0.0042 9.2E-08 46.8 4.5 57 2-58 96-152 (153)
84 COG5006 rhtA Threonine/homoser 96.2 0.0093 2E-07 48.7 4.8 51 5-55 228-278 (292)
85 KOG4510 Permease of the drug/m 96.1 0.0025 5.3E-08 52.5 1.4 67 149-215 102-168 (346)
86 PF00893 Multi_Drug_Res: Small 96.1 0.0045 9.7E-08 43.1 2.5 49 2-50 44-93 (93)
87 COG4975 GlcU Putative glucose 95.8 0.0014 2.9E-08 53.3 -1.5 178 21-218 94-287 (288)
88 COG4975 GlcU Putative glucose 94.8 0.019 4.1E-07 46.8 2.0 132 68-219 3-139 (288)
89 PF10639 UPF0546: Uncharacteri 94.0 0.039 8.6E-07 39.7 2.2 53 5-57 59-112 (113)
90 COG3238 Uncharacterized protei 94.0 2 4.4E-05 32.5 12.3 138 66-216 4-146 (150)
91 KOG2765 Predicted membrane pro 93.2 0.12 2.6E-06 44.6 4.1 72 149-220 164-235 (416)
92 KOG4314 Predicted carbohydrate 91.0 0.18 3.8E-06 40.0 2.4 61 157-217 66-126 (290)
93 PF10639 UPF0546: Uncharacteri 90.7 1.1 2.3E-05 32.4 6.0 48 165-212 62-110 (113)
94 PF06379 RhaT: L-rhamnose-prot 89.3 13 0.00028 32.1 12.3 141 66-222 6-159 (344)
95 PF07857 DUF1632: CEO family ( 86.8 1.4 3.1E-05 36.4 5.0 132 68-221 1-139 (254)
96 KOG1581 UDP-galactose transpor 86.6 19 0.00041 30.6 11.7 133 80-221 27-160 (327)
97 KOG3912 Predicted integral mem 81.7 20 0.00044 30.3 9.5 53 163-215 105-157 (372)
98 PRK02237 hypothetical protein; 81.4 17 0.00036 25.9 8.0 48 171-218 60-107 (109)
99 KOG2922 Uncharacterized conser 78.6 0.62 1.3E-05 39.6 -0.2 120 64-217 18-137 (335)
100 KOG1580 UDP-galactose transpor 67.7 28 0.00061 28.7 6.8 58 163-220 104-161 (337)
101 PF02694 UPF0060: Uncharacteri 67.5 11 0.00023 26.8 3.9 48 171-218 58-105 (107)
102 PRK02237 hypothetical protein; 65.5 13 0.00029 26.4 4.1 35 25-59 71-105 (109)
103 PF02694 UPF0060: Uncharacteri 64.9 12 0.00026 26.6 3.8 37 24-60 68-104 (107)
104 PF04657 DUF606: Protein of un 64.7 13 0.00029 27.6 4.3 52 5-56 82-138 (138)
105 KOG1441 Glucose-6-phosphate/ph 62.1 16 0.00035 31.3 4.8 72 144-215 83-176 (316)
106 PF04342 DUF486: Protein of un 60.0 13 0.00028 26.3 3.2 29 28-56 77-105 (108)
107 KOG1444 Nucleotide-sugar trans 56.8 1.3E+02 0.0027 25.8 13.0 55 160-214 93-147 (314)
108 COG5070 VRG4 Nucleotide-sugar 55.6 21 0.00045 29.2 4.1 56 2-57 239-294 (309)
109 PF04342 DUF486: Protein of un 52.1 18 0.0004 25.6 2.9 28 185-212 77-104 (108)
110 COG3169 Uncharacterized protei 49.2 54 0.0012 23.0 4.8 29 29-57 85-113 (116)
111 COG1742 Uncharacterized conser 46.1 30 0.00065 24.5 3.2 37 24-60 69-105 (109)
112 COG1575 MenA 1,4-dihydroxy-2-n 44.0 2E+02 0.0044 24.5 9.8 41 41-81 18-58 (303)
113 cd01324 cbb3_Oxidase_CcoQ Cyto 40.0 26 0.00056 21.0 1.9 20 204-223 19-38 (48)
114 PF05545 FixQ: Cbb3-type cytoc 37.2 40 0.00087 20.0 2.5 18 205-222 19-36 (49)
115 PF01102 Glycophorin_A: Glycop 36.5 35 0.00076 24.9 2.5 21 202-223 75-95 (122)
116 PF07444 Ycf66_N: Ycf66 protei 36.1 50 0.0011 22.4 3.0 27 195-221 4-30 (84)
117 TIGR02865 spore_II_E stage II 35.9 4.2E+02 0.0091 25.8 14.5 45 14-58 11-55 (764)
118 TIGR01167 LPXTG_anchor LPXTG-m 35.3 35 0.00075 18.3 1.9 13 196-208 10-22 (34)
119 COG3169 Uncharacterized protei 33.6 1E+02 0.0022 21.7 4.2 28 186-213 85-112 (116)
120 COG4657 RnfA Predicted NADH:ub 33.5 2.3E+02 0.0049 22.0 8.1 19 67-85 132-150 (193)
121 PRK12437 prolipoprotein diacyl 33.1 43 0.00093 27.9 2.9 23 196-218 235-257 (269)
122 PF05961 Chordopox_A13L: Chord 32.8 58 0.0013 21.0 2.7 22 200-221 6-27 (68)
123 COG1742 Uncharacterized conser 29.8 35 0.00077 24.1 1.5 44 174-217 62-105 (109)
124 KOG1583 UDP-N-acetylglucosamin 29.5 33 0.00071 29.0 1.5 44 178-221 99-142 (330)
125 COG3274 Predicted O-acyltransf 28.7 66 0.0014 27.6 3.2 26 15-40 46-71 (332)
126 PRK13108 prolipoprotein diacyl 28.0 3.8E+02 0.0082 24.4 8.1 23 196-218 254-276 (460)
127 PF11023 DUF2614: Protein of u 27.8 88 0.0019 22.5 3.2 24 36-59 5-28 (114)
128 PF04246 RseC_MucC: Positive r 27.7 1.1E+02 0.0025 22.3 4.1 8 179-186 76-83 (135)
129 PF02355 SecD_SecF: Protein ex 27.4 3E+02 0.0066 21.5 7.9 37 173-209 59-95 (189)
130 PF08693 SKG6: Transmembrane a 26.9 37 0.0008 19.6 1.0 17 203-219 22-38 (40)
131 TIGR00905 2A0302 transporter, 26.5 4.7E+02 0.01 23.4 13.4 24 199-222 417-440 (473)
132 KOG1442 GDP-fucose transporter 26.4 36 0.00078 28.7 1.3 49 163-211 121-169 (347)
133 PRK02935 hypothetical protein; 26.1 76 0.0016 22.5 2.6 47 35-81 5-60 (110)
134 PF02439 Adeno_E3_CR2: Adenovi 25.2 1E+02 0.0022 17.5 2.6 20 201-220 13-32 (38)
135 PRK00052 prolipoprotein diacyl 24.5 78 0.0017 26.4 2.9 22 196-217 237-258 (269)
136 COG3247 HdeD Uncharacterized c 23.7 3.7E+02 0.0079 21.2 13.2 28 36-63 16-43 (185)
137 PF10855 DUF2648: Protein of u 23.4 62 0.0014 17.6 1.4 19 204-222 6-24 (33)
138 PF15055 DUF4536: Domain of un 23.3 50 0.0011 19.8 1.1 21 203-223 10-30 (47)
139 COG3086 RseC Positive regulato 23.1 2.3E+02 0.0049 21.5 4.8 11 187-197 96-106 (150)
140 TIGR00966 3a0501s07 protein-ex 22.7 4.2E+02 0.0092 21.5 7.5 38 171-208 124-161 (246)
141 PF11384 DUF3188: Protein of u 22.3 78 0.0017 19.1 1.9 19 198-216 27-45 (49)
142 TIGR00544 lgt prolipoprotein d 21.8 91 0.002 26.1 2.8 22 196-217 246-267 (278)
143 PLN02776 prenyltransferase 20.8 5.6E+02 0.012 22.3 18.4 37 164-201 118-154 (341)
No 1
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=4.5e-31 Score=217.17 Aligned_cols=216 Identities=38% Similarity=0.640 Sum_probs=198.0
Q ss_pred CccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHH
Q 027256 1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTA 80 (226)
Q Consensus 1 ~~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a 80 (226)
+++++.+++|+|+|+++++|+..|+++++.+..++|.|++++.+.++..+.+|......+|.++|..|+.|++.+++..+
T Consensus 91 i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a 170 (314)
T KOG1444|consen 91 LFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTA 170 (314)
T ss_pred HHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhh-hcCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256 81 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-SRTPLLRLPSFWLVMTLSGFLGLAISF 159 (226)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (226)
.+.+..|+..+ +.+.+.+++++|+|+.+.|++....+++||++.. .+.+++.++..|..+.++|++|+.++|
T Consensus 171 ~~~v~~kk~vd-------~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy 243 (314)
T KOG1444|consen 171 AFVVYVKKSVD-------SANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISY 243 (314)
T ss_pred HHHHHHHHhhc-------cccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHH
Confidence 99999999876 3567999999999999999999999999997622 245556677889999999999999999
Q ss_pred HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhc
Q 027256 160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~ 223 (226)
+.+.|.+.+|+++.++++..++..+.+.+++++|++.++...+|+.+.+.|++.|++.+.|||+
T Consensus 244 ~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 244 TSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred HHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 9999999999999999997777777777777789999999999999999999999999966655
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.9e-29 Score=213.56 Aligned_cols=215 Identities=14% Similarity=0.197 Sum_probs=177.0
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASY 82 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~ 82 (226)
+++.|++|++++++++++++.|+++++++.+++|||++++++.++.++++|+.+...+|.+++..|+.+++++++++|.|
T Consensus 81 ~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~ 160 (302)
T TIGR00817 81 TSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSR 160 (302)
T ss_pred HHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999887777788888999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCC----CcchhHHHHHHHHHH-HHHH
Q 027256 83 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPL----LRLPSFWLVMTLSGF-LGLA 156 (226)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~l~~~~~-~~~~ 156 (226)
.+..||..++ ++.|++++..|++..+.+...|.....|+.+... +... ......+......+. +...
T Consensus 161 ~v~~k~~~~~-------~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (302)
T TIGR00817 161 NIFSKKAMTI-------KSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHF 233 (302)
T ss_pred HHHHHHhhcc-------CCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH
Confidence 9999997642 3578999999999999989898887766432111 0000 111122322333333 3334
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhcc
Q 027256 157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224 (226)
Q Consensus 157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~~ 224 (226)
.+...+.+++++||++.++.+++||++++++|++++||++|..+++|.++++.|.++|++.|+||+|+
T Consensus 234 ~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~~~ 301 (302)
T TIGR00817 234 YQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKPKP 301 (302)
T ss_pred HHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCcCC
Confidence 45556678999999999999999999999999999999999999999999999999999888777765
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=1.8e-28 Score=211.26 Aligned_cols=213 Identities=14% Similarity=0.213 Sum_probs=179.5
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 027256 4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS 83 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~ 83 (226)
.+.|+++.++++++++|++.|+++++++++++|||++++++.+++++++|+.+++.+|.++++.|++++++|++++|.|.
T Consensus 131 ~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~ 210 (350)
T PTZ00343 131 AVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSLRS 210 (350)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999988888999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchh--hhh-c----CCCCcchhHHHHHHHHHHHHHH
Q 027256 84 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD--YLS-R----TPLLRLPSFWLVMTLSGFLGLA 156 (226)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~----~~~~~~~~~~~~l~~~~~~~~~ 156 (226)
+..|+..++.++ ++++.++.++..+..+.+.++.+|.....|+.. ..+ + .+.+.....+..++.++++.+.
T Consensus 211 i~~k~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l 288 (350)
T PTZ00343 211 IFAKKTMKNKSE--IGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYL 288 (350)
T ss_pred HHHHHHhccccc--ccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHH
Confidence 999998775321 112466777777778889988888877554321 111 1 1111112234456677888889
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
.|.+.|.++++++|.++++.+++||++++++|++++||++|+.+++|.++++.|+++|++.|
T Consensus 289 ~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~k 350 (350)
T PTZ00343 289 YNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLFK 350 (350)
T ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999998764
No 4
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.96 E-value=3e-28 Score=206.30 Aligned_cols=213 Identities=19% Similarity=0.255 Sum_probs=185.8
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc----ccc------hHHHHH
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----SFH------AVGYAW 71 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~----~~~------~~G~~~ 71 (226)
.+++.|++|+|+|+++++|++.|+++++++.+++|||++++++.+++++++|+++...+|. +.+ ..|+.+
T Consensus 79 ~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~l 158 (303)
T PF08449_consen 79 VLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIIL 158 (303)
T ss_pred HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHH
Confidence 4678999999999999999999999999999999999999999999999999998865442 111 239999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHH--hcchhhhhcCCCCcchhHHHHHHH
Q 027256 72 QIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV--FNEVDYLSRTPLLRLPSFWLVMTL 149 (226)
Q Consensus 72 ~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~ 149 (226)
.++|.++.|.+.++.||..+++ +.+++++++|+|+.+.|...+.... .+|..+..++.. .+|..+..++.
T Consensus 159 l~~sl~~~a~~~~~qe~~~~~~-------~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~-~~p~~~~~l~~ 230 (303)
T PF08449_consen 159 LLLSLLLDAFTGVYQEKLFKKY-------GKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS-AHPSVLLYLLL 230 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH-HhHHHHHHHHH
Confidence 9999999999999999998753 5688999999999999999999888 667654433321 23456777778
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256 150 SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 222 (226)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~ 222 (226)
.++++...+...+.++++.||++.+++.++|+++++++++++||+++++.+|+|+++++.|..+|++.|+|||
T Consensus 231 ~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~~ 303 (303)
T PF08449_consen 231 FSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKKN 303 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccCC
Confidence 8888888888888889999999999999999999999999999999999999999999999999999888775
No 5
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.95 E-value=6.9e-28 Score=201.98 Aligned_cols=216 Identities=19% Similarity=0.341 Sum_probs=187.5
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHH
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTAS 81 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~ 81 (226)
++++.|++++|+++.|++|.+.|+++.+++.++.+|+.++..+.+++.+..||.+++.+|.++|+.|...++.+.+..+.
T Consensus 98 v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al 177 (316)
T KOG1441|consen 98 VLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFAL 177 (316)
T ss_pred HhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHH-HHHHHhcchhhhh-cCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256 82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGV-LLVIVFNEVDYLS-RTPLLRLPSFWLVMTLSGFLGLAISF 159 (226)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (226)
++++.|+.+++ |+++.|+.+.+.|++.++...++ |.....+...... ....+ +..++..+.. .++++.+|.
T Consensus 178 ~~I~~~~ll~~-----~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-sv~~f~~Nl 250 (316)
T KOG1441|consen 178 RNILSKKLLTS-----KGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPW-FVTFLILLLN-SVLAFLLNL 250 (316)
T ss_pred HHHHHHHhhhc-----cccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeecccc-chhhHHHHHH-HHHHHHHHH
Confidence 99999999864 24678999999999998888888 6554432221100 11111 2223434434 499999999
Q ss_pred HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhcc
Q 027256 160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERSQ 224 (226)
Q Consensus 160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~~ 224 (226)
+.|.++.++||++.++.+..|.++.+..|+++|+|+.|+.+..|+++.+.|+.+|++.|.|++++
T Consensus 251 s~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 251 SAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999988775
No 6
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.92 E-value=2.1e-23 Score=176.40 Aligned_cols=208 Identities=10% Similarity=0.091 Sum_probs=160.2
Q ss_pred cccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchHHHHHHHHHHHHHH
Q 027256 5 ICSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLTA 80 (226)
Q Consensus 5 ~~al~~-i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~a 80 (226)
+.+++| .|.+.+.++.++.|+++.+++++++|||++++++++++++++|+.+...++ .+.+..|+.+++.+++++|
T Consensus 77 ~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a 156 (299)
T PRK11453 77 FCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWA 156 (299)
T ss_pred HHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 346666 689999999999999999999999999999999999999999999776432 2345679999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256 81 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPLLRLPSFWLVMTLSGFLGLAISF 159 (226)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (226)
.|.+..|+..++. ...+......+....+...........++..... ...+ .++..|..+++.++++..++|
T Consensus 157 ~~~v~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~l~i~~t~~~~ 229 (299)
T PRK11453 157 CGNIFNKKIMSHS------TRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVT-IDMTTILSLMYLAFVATIVGY 229 (299)
T ss_pred HHHHHHHHHhccc------CccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhcc-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999975421 1122334444544444443333333333322110 1111 234568888899999999998
Q ss_pred HHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 027256 160 TSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKM 219 (226)
Q Consensus 160 ~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~ 219 (226)
..+ ..+|+.+|.+.+.+..++|+++.++|++++||+++..+++|.++++.|+++..+.++
T Consensus 230 ~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 230 GIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 887 578999999999999999999999999999999999999999999998887655544
No 7
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.92 E-value=4.5e-25 Score=172.74 Aligned_cols=214 Identities=30% Similarity=0.554 Sum_probs=188.2
Q ss_pred CccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchHHHHHH
Q 027256 1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQ 72 (226)
Q Consensus 1 ~~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~ 72 (226)
+|++..|++|+|+|.++++|+++.+.++.++..++|.|.+-.+..+..++++......++|. .+| .|++|.
T Consensus 82 Iyt~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm 160 (309)
T COG5070 82 IYTSSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWM 160 (309)
T ss_pred HHhcccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEE
Confidence 48899999999999999999999999999999999999999999999999999999999887 355 899999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHH
Q 027256 73 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF 152 (226)
Q Consensus 73 l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (226)
..+++..|.+-..+|+..+- .+....+-++|+|+.+.|+++.+++.+|||.+.- ..+...+....++.++|+
T Consensus 161 ~~NclssaafVL~mrkri~l-------tNf~d~dtmfYnNllslPiL~~~s~~~edws~~n-~annl~~d~l~am~ISgl 232 (309)
T COG5070 161 FTNCLSSAAFVLIMRKRIKL-------TNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN-LANNLSVDSLMAMFISGL 232 (309)
T ss_pred ehhhHhHHHHHHHHHHhhcc-------cccchhhHHHHhhhHHHHHHHHHHHHhccCCcch-hhcCCChHHHHHHHHHHH
Confidence 99999999999888886652 3456788999999999999999999999886431 111112233557889999
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhc
Q 027256 153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~ 223 (226)
+++.++|+.-+|+|.++.++.++++.+++....+.|.++|||+.+......+.+-+.++.+|..+|.+|+|
T Consensus 233 ~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k~q 303 (309)
T COG5070 233 CSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKKQQ 303 (309)
T ss_pred HHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999988765433
No 8
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.91 E-value=1.1e-22 Score=171.50 Aligned_cols=200 Identities=13% Similarity=0.016 Sum_probs=161.0
Q ss_pred cccc-cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchHHHHHHHHHHHHHHHH
Q 027256 5 ICSL-KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTASY 82 (226)
Q Consensus 5 ~~al-~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~ 82 (226)
+.+. +++|.+.+.++.++.|+++++++.+ +|||++++++.+++++++|+.+...+ +.+.+..|+.+++++++++|.|
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~ 165 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFG 165 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence 3455 8999999999999999999999986 69999999999999999999887543 4456678999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 027256 83 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM 162 (226)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (226)
.+..||..++ ++.....+....+.+...+.....++... .. .++..|..+++.++.+..+.+..+
T Consensus 166 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~i~~l~i~~s~~~~~l~ 230 (292)
T PRK11272 166 SVWSSRLPLP----------VGMMAGAAEMLAAGVVLLIASLLSGERLT--AL---PTLSGFLALGYLAVFGSIIAISAY 230 (292)
T ss_pred HHHHHhcCCC----------cchHHHHHHHHHHHHHHHHHHHHcCCccc--cc---CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999886421 23334456656666666666554433211 11 133457788888888887877766
Q ss_pred -HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 163 -WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 163 -~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.++|+.++.+.++..+++|+++.+++++++||++|+.+++|.++++.|+++.+++++|
T Consensus 231 ~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~~ 289 (292)
T PRK11272 231 MYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKYL 289 (292)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999999999999999999999999999998888776554
No 9
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.91 E-value=1.8e-22 Score=166.99 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=159.8
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-ccccchHHHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-DLSFHAVGYAWQIINCFLTAS 81 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~ 81 (226)
+.+.|++|+|.+.+.++.++.|+++++++.+++|||++++++.++.++++|+.+...+ +.+.+..|+.++++++++++.
T Consensus 63 ~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~ 142 (260)
T TIGR00950 63 LYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFAL 142 (260)
T ss_pred HHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999887543 345667899999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 027256 82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS 161 (226)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (226)
+.+..|+..++. +.++.....+....+.+...+.....++... .++..|..+++.++++....+..
T Consensus 143 ~~~~~k~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 208 (260)
T TIGR00950 143 GTVLYKRLVKKE-------GPELLQFTGWVLLLGALLLLPFAWFLGPNPQ-------ALSLQWGALLYLGLIGTALAYFL 208 (260)
T ss_pred HHHHHhHHhhcC-------CchHHHHHHHHHHHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHHHHHHHHHHHH
Confidence 999999986531 1223344445567777777777665443211 12344666777888887777776
Q ss_pred H-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 027256 162 M-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 211 (226)
Q Consensus 162 ~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~ 211 (226)
+ .++|+.++.+.+.+.+++|+++.+++++++||+++..+++|.++++.|.
T Consensus 209 ~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 209 WNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 5 6899999999999999999999999999999999999999999998775
No 10
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.90 E-value=1.3e-23 Score=165.79 Aligned_cols=204 Identities=14% Similarity=0.069 Sum_probs=176.6
Q ss_pred CccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-------ccchHHHHHHH
Q 027256 1 MFKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-------SFHAVGYAWQI 73 (226)
Q Consensus 1 ~~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~-------~~~~~G~~~~l 73 (226)
|.++|.|++++|.|+..+-+++.|+.+++++.++.|++.+|+++..+++++.|+++..+.+. ....+|-++.+
T Consensus 99 MVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~ 178 (337)
T KOG1580|consen 99 MVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLI 178 (337)
T ss_pred HHhccchhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998865431 22248999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHH
Q 027256 74 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFL 153 (226)
Q Consensus 74 ~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (226)
+|-...+......+++... .+-+.-.|++|+|+.+...+....+++||..+.+.+.. +.|..|..+...+++
T Consensus 179 lSL~mDGlTg~~Qdrira~-------yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~-RhP~~~~~l~l~ai~ 250 (337)
T KOG1580|consen 179 LSLAMDGLTGSIQDRIRAS-------YQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQ-RHPYVFWDLTLLAIA 250 (337)
T ss_pred HHHHhcccchhHHHHHHHh-------hccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHH-hccHHHHHHHHHHHH
Confidence 9999999888888887653 23466789999999999998888889998765544432 346667788888999
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 027256 154 GLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV 212 (226)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~ 212 (226)
+.+.+.+.|..+...+|+++|++.+.|+.+++++++++|+++++.+||+|.++.+.+..
T Consensus 251 s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~ 309 (337)
T KOG1580|consen 251 SCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALT 309 (337)
T ss_pred HHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999887644
No 11
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.90 E-value=1e-21 Score=169.30 Aligned_cols=206 Identities=13% Similarity=0.118 Sum_probs=154.5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHH------hCcccChhHHHHHHHHHHhhhhhcc-ccc-------------
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYL------FNKRHDNRVWAALFLMIISAISGGI-TDL------------- 62 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~------~~~~~~~~~~~al~l~~~Gv~l~~~-~~~------------- 62 (226)
+.+.+++|++.+.+.++.++.|+++++++.++ +|||++++++++++++++|+.+... ++.
T Consensus 94 ~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~ 173 (358)
T PLN00411 94 TGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNF 173 (358)
T ss_pred HHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccc
Confidence 35678999999999999999999999999999 6999999999999999999987642 111
Q ss_pred ----------ccc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCc-hhHHHHHHHHHHHHHHHHHHHhcch-
Q 027256 63 ----------SFH-AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNE-FSMVLLNNSLSLPLGVLLVIVFNEV- 129 (226)
Q Consensus 63 ----------~~~-~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~- 129 (226)
+.+ ..|+.+++.+++++|.|.+..|+..+++ ++ ....++....+.....+.....++.
T Consensus 174 ~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~---------~~~~~~t~~~~~~~~~~~~~~~l~~~~~~ 244 (358)
T PLN00411 174 RQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEY---------PAAFTVSFLYTVCVSIVTSMIGLVVEKNN 244 (358)
T ss_pred cccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---------CcHhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 112 4599999999999999999999986643 23 2334444443333333333333321
Q ss_pred hhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 027256 130 DYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGL 208 (226)
Q Consensus 130 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii 208 (226)
...+. .. .+...+ .+++.+++. .+.|..| .++|+.+|.+++++.+++|++++++|++++||++++.+++|.++++
T Consensus 245 ~~~~~-~~-~~~~~~-~i~y~~i~t-~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl 320 (358)
T PLN00411 245 PSVWI-IH-FDITLI-TIVTMAIIT-SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILIT 320 (358)
T ss_pred cccce-ec-cchHHH-HHHHHHHHH-HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 11111 11 122223 355666654 3566665 6899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhhh
Q 027256 209 LAGVFFARAKMWE 221 (226)
Q Consensus 209 ~g~~~~~~~~~~~ 221 (226)
.|+++.++.|+||
T Consensus 321 ~Gv~l~~~~~~~~ 333 (358)
T PLN00411 321 LGFYAVMWGKANE 333 (358)
T ss_pred HHHHHHHhhhhhh
Confidence 9999888776654
No 12
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.89 E-value=1.7e-21 Score=164.47 Aligned_cols=195 Identities=11% Similarity=0.070 Sum_probs=146.5
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------ccchHHHHHHHHHHH
Q 027256 9 KYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------SFHAVGYAWQIINCF 77 (226)
Q Consensus 9 ~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~-----------~~~~~G~~~~l~s~~ 77 (226)
++.+...+.++.++.|+++++++++++|||++++++.+++++++|+.+...+|. +.+..|+.+++.+++
T Consensus 87 ~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~aa~ 166 (295)
T PRK11689 87 TRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIGAF 166 (295)
T ss_pred ccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHHHH
Confidence 456777888999999999999999999999999999999999999988765432 123469999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 027256 78 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 157 (226)
Q Consensus 78 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (226)
++|.|.+..||..++ .++....+ ..+.....+.....++.. . + .++..|..+++.++ +..+
T Consensus 167 ~~A~~~v~~k~~~~~---------~~~~~~~~---~~~~~~l~~~~~~~~~~~----~-~-~~~~~~~~l~~~~~-~t~~ 227 (295)
T PRK11689 167 IWAAYCNVTRKYARG---------KNGITLFF---ILTALALWIKYFLSPQPA----M-V-FSLPAIIKLLLAAA-AMGF 227 (295)
T ss_pred HHHHHHHHHhhccCC---------CCchhHHH---HHHHHHHHHHHHHhcCcc----c-c-CCHHHHHHHHHHHH-HHHH
Confidence 999999999997532 34444322 122222222222222211 1 1 12344666667675 4555
Q ss_pred HHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256 158 SFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 222 (226)
Q Consensus 158 ~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~ 222 (226)
.|..+ .++|+.+|.+.+...+++|++++++|++++||+++..+++|.++++.|++.....+++++
T Consensus 228 ~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~~~~ 293 (295)
T PRK11689 228 GYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATRRKR 293 (295)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHhHhc
Confidence 66655 689999999999999999999999999999999999999999999998877655554433
No 13
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=1.9e-24 Score=173.80 Aligned_cols=213 Identities=21% Similarity=0.268 Sum_probs=195.7
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc---cccchHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD---LSFHAVGYAWQIINCFLT 79 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~ 79 (226)
+++++++|.+++++++-|++.-+|+.++.++++|+|-+..-..++.+++.|-.+-...| ..+++.|.+++..|+++-
T Consensus 118 fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~v 197 (347)
T KOG1442|consen 118 FNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAV 197 (347)
T ss_pred ccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999988877655 467899999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256 80 ASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF 159 (226)
Q Consensus 80 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (226)
|...+..||..++++ -.-|.+.+|+|..++.+++|...+.||.+..+.+|+.....+|..+.++|++|+.++|
T Consensus 198 Alnaiytkk~l~~v~-------~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgy 270 (347)
T KOG1442|consen 198 ALNAIYTKKVLPPVG-------DCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGY 270 (347)
T ss_pred HHHHHhhheeccccc-------CeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhh
Confidence 999999998876532 2468999999999999999999999999998888877677899999999999999999
Q ss_pred HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256 160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 222 (226)
Q Consensus 160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~ 222 (226)
....-+|.+||+++.+-++.|....+++++.+++|.-+..-|-|-.+++.|...|++.|.++.
T Consensus 271 vTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em 333 (347)
T KOG1442|consen 271 VTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEM 333 (347)
T ss_pred eeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHH
Confidence 988889999999999999999999999999999999999999999999999999998876543
No 14
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.88 E-value=1e-20 Score=159.73 Aligned_cols=199 Identities=11% Similarity=0.071 Sum_probs=140.7
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHH
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTAS 81 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~ 81 (226)
.+.+.+++++|++.+.++.++.|+++++++++++|||++++++.+++++++|+.++..++.+.+ .++++++++||.
T Consensus 88 ~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~aa~~~a~ 163 (296)
T PRK15430 88 LLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALGLAFSFAF 163 (296)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHH
Confidence 3567899999999999999999999999999999999999999999999999998764332222 468889999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 027256 82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTS 161 (226)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 161 (226)
|.+..|+..++ ...+......+....+.+...+. .++.......+ ....+..+...++.+....++.
T Consensus 164 ~~i~~r~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 164 YGLVRKKIAVE-------AQTGMLIETMWLLPVAAIYLFAI---ADSSTSHMGQN---PMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred HHHHHHhcCCC-------CchhHHHHHHHHHHHHHHHHHHH---ccCCcccccCC---cHHHHHHHHHHHHHHHHHHHHH
Confidence 99998886431 11122222233322232221111 11111101111 1112333444455444434444
Q ss_pred HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 162 MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 162 ~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
..++|+.+|.+.+.+.+++|+++.++|++++||++++.+++|+++++.+..+...+
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999998776665443
No 15
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.87 E-value=4e-20 Score=155.93 Aligned_cols=196 Identities=13% Similarity=0.043 Sum_probs=150.4
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc--c-cccchHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT--D-LSFHAVGYAWQIINCFLT 79 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~--~-~~~~~~G~~~~l~s~~~~ 79 (226)
+.+++++|+|.+.+.++..+.|+++++++ +|++++. ..+.++++|+.++... | .+.+..|+.+++++++++
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~ 160 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW 160 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence 45678999999999999999999999887 3665544 4566778999876432 2 234568999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHH
Q 027256 80 ASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISF 159 (226)
Q Consensus 80 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (226)
|.|.+..|+..++ .++... .+..+.+.....+.....+. . .. .++..|..+++.++++..++|
T Consensus 161 a~~~v~~r~~~~~---------~~~~~~-~~~~~~~~~~l~~~~~~~~~-~-----~~-~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 161 AIYILSGQRAGAE---------HGPATV-AIGSLIAALIFVPIGALQAG-E-----AL-WHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHhcc---------CCchHH-HHHHHHHHHHHHHHHHHccC-c-----cc-CCHHHHHHHHHHHHHHHHHHH
Confidence 9999999997542 345544 34445555555555443221 0 01 133446566788899988888
Q ss_pred HHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256 160 TSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 160 ~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~ 221 (226)
..+ ..+++.+|.++++..+++|++++++|++++||+++..+++|.++++.|++.+.+..+|+
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~ 286 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRRE 286 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 775 68999999999999999999999999999999999999999999999988887665554
No 16
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.85 E-value=3.9e-20 Score=151.14 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=178.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc---c------cccchHHHHHH
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT---D------LSFHAVGYAWQ 72 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~---~------~~~~~~G~~~~ 72 (226)
+|+.+||+|++.|+.++.|++.-+.+++++.+++|+|+++.+++...++..|+.+.... | .+..++|+.+.
T Consensus 98 ~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll 177 (327)
T KOG1581|consen 98 WCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLL 177 (327)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHH
Confidence 47889999999999999999999999999999999999999999999999999876432 2 12457999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHH
Q 027256 73 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF 152 (226)
Q Consensus 73 l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (226)
..+-++.++.+...+++.++ .++++++++++.|+.+++......+..|.+.+..++-. .+|..+.-+.+-+.
T Consensus 178 ~~~L~fDgfTn~tQd~lf~~-------~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~-~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 178 FGYLLFDGFTNATQDSLFKK-------YKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIK-EHPDVAFDILLYST 249 (327)
T ss_pred HHHHHHHhhHHhHHHHHhcc-------CCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHH-cChhHHHHHHHHHH
Confidence 99999999999999999875 46899999999999999998888665555433222211 24566777778889
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
+|.+.+...+..+++.+|.+.+.+.+.|++++++++.+.||++++..||.|+.+.+.|..+=.+.|+|
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987655443444444
No 17
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.83 E-value=8.8e-20 Score=149.09 Aligned_cols=209 Identities=14% Similarity=0.170 Sum_probs=178.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHH
Q 027256 4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYS 83 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~ 83 (226)
+|.|++|++++.+++.|+..++|+.+++.++.-||++|.....+.++..|+.+...++.++|..|+++++.++++.++..
T Consensus 101 SN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW 180 (349)
T KOG1443|consen 101 SNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRW 180 (349)
T ss_pred ccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhH
Confidence 68899999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhh-----hcCCCCcch-hHHHHHHHHHHHHHHH
Q 027256 84 LTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYL-----SRTPLLRLP-SFWLVMTLSGFLGLAI 157 (226)
Q Consensus 84 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~l~~~~~~~~~~ 157 (226)
...+++.++.+ ..+-||.+.+++..-.....++|..+..|+.... +++.+..+. .....+...|..++..
T Consensus 181 ~~tQ~ll~~~~----~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l 256 (349)
T KOG1443|consen 181 AFTQMLLRNQP----SAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLL 256 (349)
T ss_pred HHHHHHHhcCc----cccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 99999888743 2456899999888888888888888888765322 222222121 1222344566777777
Q ss_pred HHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 158 SFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 158 ~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
..+.+..+++++..+.++++..|.+.+.+++..+.+|+++...|.|..+++.|...+..
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhcc
Confidence 88888889999999999999999999999999999999999999999999999888833
No 18
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.83 E-value=2.1e-19 Score=152.52 Aligned_cols=206 Identities=11% Similarity=0.111 Sum_probs=161.2
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------ccchHHHHHH
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL---------SFHAVGYAWQ 72 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~---------~~~~~G~~~~ 72 (226)
|+.+.|++|++++.++++.++..+++++++++++|+|+++.+++++.+.++|++++...|. +....|++++
T Consensus 94 ~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~ 173 (334)
T PF06027_consen 94 YLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLA 173 (334)
T ss_pred HHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHH
Confidence 3557899999999999999999999999999999999999999999999999998765442 2347999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHH
Q 027256 73 IINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGF 152 (226)
Q Consensus 73 l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 152 (226)
+.++.+||.+++..|+..++ .+..+.+....+++.++..+...+. |.++..+.+ | ++..+.. .....
T Consensus 174 l~~a~lya~~nV~~E~~v~~---------~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~~-w-~~~~~~~-~v~~~ 240 (334)
T PF06027_consen 174 LLGAILYAVSNVLEEKLVKK---------APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESIH-W-TSQVIGL-LVGYA 240 (334)
T ss_pred HHHHHHHHHHHHHHHHhccc---------CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhccC-C-ChhhHHH-HHHHH
Confidence 99999999999999998764 3556666666677777777776655 443332322 2 2222222 22222
Q ss_pred HHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 153 LGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.+....|+.. ..++..+|+..++-...-.+.++++++++||+++++..++|.++++.|.++|...+++
T Consensus 241 ~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 241 LCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred HHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCc
Confidence 2334455544 4689999998888778889999999999999999999999999999999999766443
No 19
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.82 E-value=5.7e-19 Score=148.07 Aligned_cols=199 Identities=14% Similarity=0.172 Sum_probs=143.7
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc-cccchHHHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD-LSFHAVGYAWQIINCFLTAS 81 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~ 81 (226)
+.+.++++.|++....+.++.|+++++++++++|||++++++.++.+++.|+.+...+| .+.+..|+.++++++++++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~ 158 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAI 158 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 44678999999999999999999999999999999999999999999999999876533 23456788899999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHH-HHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 027256 82 YSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLS-LPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFT 160 (226)
Q Consensus 82 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (226)
|.+..|+..++.+ ...+......+..... .|.... ....++. .. .+ .+..+..+++.+.+...+.|.
T Consensus 159 ~~i~~k~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~--~~---~~~~~~~~~~~~~~~s~l~~~ 226 (281)
T TIGR03340 159 YSLSDKAAALGVP-----AFYSALGYLGIGFLAMGWPFLLL-YLKRHGR-SM--FP---YARQILPSATLGGLMIGGAYA 226 (281)
T ss_pred hhhhccccccchh-----cccccHHHHHHHHHHHHHHHHHH-HHHHhcc-ch--hh---hHHHHHHHHHHHHHHHHHHHH
Confidence 9998877533211 0111222222222221 222221 1111111 00 01 111233445555566666666
Q ss_pred HH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 027256 161 SM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVF 213 (226)
Q Consensus 161 ~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~ 213 (226)
.+ .++|+.++.+.+.+.+++|++++++|++++||+++..+++|.++++.|+.+
T Consensus 227 l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 227 LVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 55 689999999999999999999999999999999999999999999988764
No 20
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.82 E-value=5.1e-19 Score=135.08 Aligned_cols=147 Identities=18% Similarity=0.386 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcC---C--CC-cch
Q 027256 68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRT---P--LL-RLP 141 (226)
Q Consensus 68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~-~~~ 141 (226)
|+.+++.|+++.|++.+..|+..++.+ .++++.+++++++|++..++++.+|..+..|+++..... . .. .++
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~--~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 78 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVS--SNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDP 78 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchH
Confidence 788999999999999999999988631 123578999999999999999999999988876522111 1 11 144
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 142 SFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
..+..++.+|++++..|++.+.+++++||++.++++++|++..+++|+++|||++|..+++|+++++.|.+.|+|
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 667788899999999999999999999999999999999999999999999999999999999999999999975
No 21
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.80 E-value=1.7e-17 Score=138.45 Aligned_cols=197 Identities=18% Similarity=0.278 Sum_probs=151.7
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHH-HHhCcccChhHHHHHHHHHHhhhhhccccccc---chHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEM-YLFNKRHDNRVWAALFLMIISAISGGITDLSF---HAVGYAWQIINCFL 78 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~-~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~---~~~G~~~~l~s~~~ 78 (226)
+.+.++++++++.++++.++.|+++.+++. +++|||++++++.++.+++.|+.++..++... +..|..+++.++++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~ 165 (292)
T COG0697 86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALL 165 (292)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHH
Confidence 456779999999999999999999999997 77799999999999999999999998765443 25899999999999
Q ss_pred HHHHHHHHHHHhhhhhhhcccCCCCchhHHH-HHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 027256 79 TASYSLTLRRVMDTAKQVTKSGNLNEFSMVL-LNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 157 (226)
Q Consensus 79 ~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (226)
+|.+.+..|+.. + .++..... +... ............+.. .+ .+...|..+.+.++.+..+
T Consensus 166 ~a~~~~~~~~~~-~---------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~g~~~~~i 227 (292)
T COG0697 166 WALYTALVKRLS-R---------LGPVTLALLLQLL--LALLLLLLFFLSGFG----AP--ILSRAWLLLLYLGVFSTGL 227 (292)
T ss_pred HHHHHHHHHHhc-C---------CChHHHHHHHHHH--HHHHHHHHHHhcccc----cc--CCHHHHHHHHHHHHHHHHH
Confidence 999999999875 2 23444443 2222 111111111111111 11 1233466677777877765
Q ss_pred HHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 158 SFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 158 ~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
.+..+ ...++.++...+.....+|+.+.+++++++||+++..+++|..+++.|......+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 228 AYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 55554 6899999999999999999999999999999999999999999999888877665
No 22
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.1e-18 Score=140.86 Aligned_cols=206 Identities=18% Similarity=0.254 Sum_probs=160.5
Q ss_pred cccccccc-cchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc---cccc--------------c
Q 027256 3 KFICSLKY-INVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI---TDLS--------------F 64 (226)
Q Consensus 3 ~~~~al~~-i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~---~~~~--------------~ 64 (226)
++|+++++ +|+|.+.++|+.+++.+|++++++.|+|.+.+|+.++.++.+|++++.. +|.+ +
T Consensus 80 ~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~ 159 (330)
T KOG1583|consen 80 TNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDF 159 (330)
T ss_pred eccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccc
Confidence 57778775 8999999999999999999999999999999999999999999998743 2221 1
Q ss_pred c--hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchh----hhhcC---
Q 027256 65 H--AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVD----YLSRT--- 135 (226)
Q Consensus 65 ~--~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--- 135 (226)
. ..|..+..++.+..|...++.+..+++++ =|+-|.+||+++.+.|.++... +|.. ..+..
T Consensus 160 ~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyG-------Kh~~EalFytH~LsLP~Flf~~---~div~~~~~~~~se~~ 229 (330)
T KOG1583|consen 160 FWWLIGIALLVFALLLSAYMGIYQETTYQKYG-------KHWKEALFYTHFLSLPLFLFMG---DDIVSHWRLAFKSESY 229 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CChHHHHHHHHHhccchHHHhc---chHHHHHHHHhcCcce
Confidence 1 26777777888999999999999988752 3788999999999999877432 2221 11111
Q ss_pred --CCC--cchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 027256 136 --PLL--RLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 211 (226)
Q Consensus 136 --~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~ 211 (226)
|.. .-|..|..++..++.-.+.-=..+.....+++++++++-++|+.+++++|++.|++++|++.|+|..+.+.|.
T Consensus 230 ~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt 309 (330)
T KOG1583|consen 230 LIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGT 309 (330)
T ss_pred eccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHH
Confidence 221 2356677777765554432212223346899999999999999999999999999999999999999999999
Q ss_pred HHHHhhh
Q 027256 212 VFFARAK 218 (226)
Q Consensus 212 ~~~~~~~ 218 (226)
++|+...
T Consensus 310 ~~fa~~~ 316 (330)
T KOG1583|consen 310 LLFANVW 316 (330)
T ss_pred HHHHHHH
Confidence 9997553
No 23
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.77 E-value=8.1e-18 Score=135.59 Aligned_cols=209 Identities=16% Similarity=0.103 Sum_probs=172.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccc----cccchHHHHHHHHHHHHH
Q 027256 4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITD----LSFHAVGYAWQIINCFLT 79 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~----~~~~~~G~~~~l~s~~~~ 79 (226)
++.|+.|+|.|+..++|+|..+.+++.+.++.++|.++.++.+..+..+|.+.....| .+||..|+.+.-.+-++.
T Consensus 123 sn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~D 202 (367)
T KOG1582|consen 123 SNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLAD 202 (367)
T ss_pred CcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999887766 478899999999999999
Q ss_pred HHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchh-HHHHHHHHHHHHHHHH
Q 027256 80 ASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPS-FWLVMTLSGFLGLAIS 158 (226)
Q Consensus 80 a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~ 158 (226)
|.-.-+.++.++.. +.++.++++|...++++..+.....+||..+.+.+-. .+|. ......+-+..+++..
T Consensus 203 A~iGNvQEk~m~~~-------~~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fca-ehp~~tyGy~~~~s~~gylG~ 274 (367)
T KOG1582|consen 203 AVIGNVQEKAMKMN-------PASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCA-EHPVRTYGYAFLFSLAGYLGI 274 (367)
T ss_pred HHhhHHHHHHHhhC-------CCCcceEEEeeecccHHHHHHHHHhcccchhhhHHHH-hCcHhHHHHHHHHHHHhHhhH
Confidence 99988888888743 4577899999999999999999999999765543211 0111 2233333345555544
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 159 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 159 ~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.+....+|..++.+++.+.+.|+..++++|+++|.+|+|.+..-|..++..|.++.-+.|+.
T Consensus 275 ~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 275 VFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 44445689999999999999999999999999999999999888888888898877666533
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.70 E-value=1.4e-15 Score=128.06 Aligned_cols=193 Identities=15% Similarity=0.177 Sum_probs=147.3
Q ss_pred ccccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhH----HHHHHHHHHhhhhhcccccc-------cc-hHH
Q 027256 2 FKFICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRV----WAALFLMIISAISGGITDLS-------FH-AVG 68 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~----~~al~l~~~Gv~l~~~~~~~-------~~-~~G 68 (226)
++.+.|.++++++.+..+.+ ++|++..+.+.+++|||.++++ +++++++++|+++....+.+ .+ ..|
T Consensus 74 ~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~G 153 (290)
T TIGR00776 74 INQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKG 153 (290)
T ss_pred hhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhH
Confidence 45678899999999999988 8899999999999999999999 99999999999987542211 33 689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHH----HHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 027256 69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 144 (226)
Q Consensus 69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (226)
..++++|+++|+.|.+..|+.. .++++..+.+.. .+..+..+. . + . +++.....|
T Consensus 154 i~~~l~sg~~y~~~~~~~~~~~-----------~~~~~~~~~~~~g~~~~~~~~~~~~---~-~-----~-~~~~~~~~~ 212 (290)
T TIGR00776 154 ILLLLMSTIGYLVYVVVAKAFG-----------VDGLSVLLPQAIGMVIGGIIFNLGH---I-L-----A-KPLKKYAIL 212 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-----------CCcceehhHHHHHHHHHHHHHHHHH---h-c-----c-cchHHHHHH
Confidence 9999999999999999998751 466666444332 222222221 0 0 0 111122234
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHh-hcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH----HHHHHHHHHHHHHHhh
Q 027256 145 LVMTLSGFLGLAISFTSM-WFLH-QTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARA 217 (226)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~----iG~~lii~g~~~~~~~ 217 (226)
..+ ..|++ ..+.+..| ...+ +.++.+.++++.++|+.+++.++++++|+.++.|+ +|.++++.|+.+....
T Consensus 213 ~~~-~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 213 LNI-LPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHH-HHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 344 37777 45666555 6778 99999999999999999999999999999999999 9999999988876543
No 25
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.70 E-value=1.4e-15 Score=125.86 Aligned_cols=169 Identities=12% Similarity=0.172 Sum_probs=120.6
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASY 82 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~ 82 (226)
+.+.|++++|++.++++.++.|+++++++.+++|||+++++++++.++++|+.+...++.+.+ .+++.+++++|.|
T Consensus 86 ~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l~aa~~~a~~ 161 (256)
T TIGR00688 86 LFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEALVLAFSFTAY 161 (256)
T ss_pred HHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999987754322222 3678899999999
Q ss_pred HHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Q 027256 83 SLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM 162 (226)
Q Consensus 83 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (226)
.+..|+..++ +..+... .++...|...+.... +++... ..++ ....|..+.+.++++. +.|..+
T Consensus 162 ~i~~~~~~~~----------~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~--~~~~~~~l~~~g~~t~-i~~~l~ 225 (256)
T TIGR00688 162 GLIRKALKNT----------DLAGFCL-ETLSLMPVAIYYLLQ-TDFATV-QQTN--PFPIWLLLVLAGLITG-TPLLAF 225 (256)
T ss_pred HHHHhhcCCC----------CcchHHH-HHHHHHHHHHHHHHH-hccCcc-cccC--chhHHHHHHHHHHHHH-HHHHHH
Confidence 9999886431 2222222 123333443332222 121110 1111 1124667777777744 455554
Q ss_pred -HHHhhcchhHHHHHhhhhhHHHHHHHHHh
Q 027256 163 -WFLHQTGATTYSLVGSLNKIPLSVAGILL 191 (226)
Q Consensus 163 -~~~~~~~~~~~si~~~l~~v~~~i~~~l~ 191 (226)
.++|+.+|.+.++..+++|+++++++++.
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999764
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.69 E-value=2.7e-15 Score=123.02 Aligned_cols=190 Identities=18% Similarity=0.290 Sum_probs=151.4
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc-----------------ccchH
Q 027256 5 ICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL-----------------SFHAV 67 (226)
Q Consensus 5 ~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~-----------------~~~~~ 67 (226)
+.++++++.+++|+++++..++|+++.++++|+|++++||.++.+.++|+.+...++. +....
T Consensus 35 ~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (244)
T PF04142_consen 35 FVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDNSSSSSVHHDASNQNPLL 114 (244)
T ss_pred HHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccccccccccccccccccchhHh
Confidence 5689999999999999999999999999999999999999999999999998743111 11359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcC--CCCcchhHHH
Q 027256 68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRT--PLLRLPSFWL 145 (226)
Q Consensus 68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 145 (226)
|....+.++++.++..++.||.+|+ ++.+.|.......+.+.++.++..... |..+..+. -..+++..|.
T Consensus 115 G~~~vl~~~~~S~~agVy~E~~lK~-------~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~~~g~f~G~~~~~~~ 186 (244)
T PF04142_consen 115 GLLAVLAAAFLSGFAGVYFEKLLKR-------SNVSLWIQNMQLYLFGILFNLLALLLS-DGSAISESGFFHGYSWWVWI 186 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHhcc-cccccccCCchhhcchHHHH
Confidence 9999999999999999999999985 345667666666677888877765443 33222111 1123455566
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHH
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFF 206 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~l 206 (226)
.+...++.|...++ ++|+.+...-+....+..+.+.+.++++||.++|....+|..+
T Consensus 187 ~i~~~a~gGllva~----v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~ 243 (244)
T PF04142_consen 187 VIFLQAIGGLLVAF----VLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAAL 243 (244)
T ss_pred HHHHHHHhhHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheec
Confidence 66666777777665 4899999999999999999999999999999999999988764
No 27
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.67 E-value=9.9e-15 Score=122.43 Aligned_cols=206 Identities=15% Similarity=0.227 Sum_probs=165.8
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----c------cccchHHHHHHHH
Q 027256 6 CSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----D------LSFHAVGYAWQII 74 (226)
Q Consensus 6 ~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-----~------~~~~~~G~~~~l~ 74 (226)
.++.+++.+++++..++..+.|+++..+++|||.+++||.++.+.+.|+.+...+ | .+-.+.|...++.
T Consensus 111 val~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~~avl~ 190 (345)
T KOG2234|consen 111 VALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGLVAVLV 190 (345)
T ss_pred HHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhHHHHHH
Confidence 5678899999999999999999999999999999999999999999999988521 1 1234799999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhc--CCCCcchhHHHHHHHHHH
Q 027256 75 NCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSR--TPLLRLPSFWLVMTLSGF 152 (226)
Q Consensus 75 s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~ 152 (226)
++..+++..++.+|++++ .+.+.|-...-..+++.++.+...+.. |.....+ +-..++...|..++..++
T Consensus 191 ~c~~SgfAgvYfEkiLK~-------s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~~a~ 262 (345)
T KOG2234|consen 191 ACFLSGFAGVYFEKILKG-------SNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLLNAV 262 (345)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHHHhc
Confidence 999999999999999874 356777665555577888877776655 3332211 112235566777777888
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhhc
Q 027256 153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~~ 223 (226)
.|...+.. .|+.+...-.....+-.+++.+.++.+||.++|..-.+|+.+++.+..+|+..++++++
T Consensus 263 gGLlvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~~~ 329 (345)
T KOG2234|consen 263 GGLLVSLV----MKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARDAQ 329 (345)
T ss_pred cchhHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccccc
Confidence 88877753 78888888888888889999999999999999999999999999999999977766533
No 28
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.65 E-value=2.4e-15 Score=126.36 Aligned_cols=205 Identities=17% Similarity=0.121 Sum_probs=156.7
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchHHHHHHH
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQI 73 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~l 73 (226)
|+.+.||.+.+++..+++.+++-+||..++.++..||+++.|.+++.+.+.|++++..+|. .-+..|..+++
T Consensus 174 l~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~llaL 253 (416)
T KOG2765|consen 174 LTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLLAL 253 (416)
T ss_pred HHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999977643 12369999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHH----HHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256 74 INCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSL----PLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL 149 (226)
Q Consensus 74 ~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (226)
++|++||.|.+..||-.+++ +++++.-.+.-|.-++.+ |...++-.. ++. -++.|+.. . ...+++
T Consensus 254 ~sA~~YavY~vllk~~~~~e-----g~rvdi~lffGfvGLfnllllwP~l~iL~~~-~~e--~F~lP~~~--q-~~~vv~ 322 (416)
T KOG2765|consen 254 LSALLYAVYTVLLKRKIGDE-----GERVDIQLFFGFVGLFNLLLLWPPLIILDFF-GEE--RFELPSST--Q-FSLVVF 322 (416)
T ss_pred HHHHHHHHHHHHHHhhcccc-----cccccHHHHHHHHHHHHHHHHhHHHHHHHHh-ccC--cccCCCCc--e-eEeeeH
Confidence 99999999999999977642 134544333333333333 333333333 221 12344321 1 224455
Q ss_pred HHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 150 SGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
.++.+.+++-..| .+.-.++|+..++-..+..+.+.+..+++=++++|+.+++|...++.|.+..++.
T Consensus 323 ~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~ 391 (416)
T KOG2765|consen 323 NNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNIS 391 (416)
T ss_pred hhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecc
Confidence 6666766654444 6788999999999999999999999999999999999999999999987776654
No 29
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.64 E-value=9.3e-17 Score=129.28 Aligned_cols=200 Identities=13% Similarity=0.092 Sum_probs=158.2
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc-----cc---------ccchHHH
Q 027256 4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT-----DL---------SFHAVGY 69 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~-----~~---------~~~~~G~ 69 (226)
.++|++|+|++-+.++-+.+|++|.++++.++||+.++.+.++..+.+.||+++..+ |. +-+..|-
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt 193 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT 193 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence 468999999999999999999999999999999999999999999999999988532 21 1234788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256 70 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL 149 (226)
Q Consensus 70 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (226)
+-++.++++.|.-.+..|++.++ .|....+-|...++....++.....+++ +.|+- ..-|..++.
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~---------~h~~msvsyf~~i~lV~s~I~~~~ig~~----~lP~c--gkdr~l~~~ 258 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKN---------AHAIMSVSYFSLITLVVSLIGCASIGAV----QLPHC--GKDRWLFVN 258 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhcc---------ccEEEEehHHHHHHHHHHHHHHhhccce----ecCcc--ccceEEEEE
Confidence 88888888888888999998653 5666666677777777777777666654 33321 112445567
Q ss_pred HHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 150 SGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
.|++|+..+......+..-.+...++..+..-+++.++.+++|+|.+|.+.|.|+++++.+.+....+|
T Consensus 259 lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~k 327 (346)
T KOG4510|consen 259 LGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKK 327 (346)
T ss_pred ehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHH
Confidence 788899888887766555555556788899999999999999999999999999999988777665544
No 30
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.62 E-value=2.3e-13 Score=111.47 Aligned_cols=196 Identities=14% Similarity=0.223 Sum_probs=150.6
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHHHHHHH
Q 027256 7 SLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTASYSLTL 86 (226)
Q Consensus 7 al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~i~~ 86 (226)
|.++--+=.+..-....|++..+++.+++|||+++.|++|+.++.+||..-...-.++++....+ ++.|+.|...-
T Consensus 92 Avn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval~l----a~sf~~Ygl~R 167 (293)
T COG2962 92 AVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVALAL----ALSFGLYGLLR 167 (293)
T ss_pred ecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH----HHHHHHHHHHH
Confidence 33343444555777899999999999999999999999999999999998877666788666544 45788887666
Q ss_pred HHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHH
Q 027256 87 RRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFL 165 (226)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~ 165 (226)
|++ +.+..+-...-.+.-.|+.+.+.+..++..+..... ++..|..+..+|..+.+ ....| .+-
T Consensus 168 K~~-----------~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~---~~~~~~LLv~aG~vTav-pL~lf~~aa 232 (293)
T COG2962 168 KKL-----------KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQN---ANSLWLLLVLAGLVTAV-PLLLFAAAA 232 (293)
T ss_pred Hhc-----------CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcC---CchHHHHHHHhhHHHHH-HHHHHHHHH
Confidence 554 356676666666778888888888776654311111 22346566666666654 33334 578
Q ss_pred hhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256 166 HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 166 ~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~ 221 (226)
|+.+-.+.+++++++|...-+++++++||+++..+.+..+.+-.+.++|+...-++
T Consensus 233 ~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~~ 288 (293)
T COG2962 233 KRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLYT 288 (293)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998776443
No 31
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.60 E-value=6.2e-14 Score=112.28 Aligned_cols=197 Identities=16% Similarity=0.074 Sum_probs=148.9
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc---cccccchHHHHHHHHHHHHHH
Q 027256 4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI---TDLSFHAVGYAWQIINCFLTA 80 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~a 80 (226)
.+.|++++|++++..+.++.|+.++.+.. +| .+..+-+.+.+.|..+..- +..+.|..|..+++.+..+++
T Consensus 88 FY~si~riPlGiAVAiEF~GPL~vA~~~s----Rr--~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa 161 (292)
T COG5006 88 FYLSIERIPLGIAVAIEFTGPLAVALLSS----RR--LRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWA 161 (292)
T ss_pred HHHHHHhccchhhhhhhhccHHHHHHHhc----cc--hhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHH
Confidence 45689999999999999999999887762 22 3445555666777766532 234688999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHH
Q 027256 81 SYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFT 160 (226)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 160 (226)
.|.+..||.-+ ..+.-+-+.+....+..+.+|+-....+ +...+|.....-+..++++..+-|+
T Consensus 162 ~YIv~G~r~g~---------~~~g~~g~a~gm~vAaviv~Pig~~~ag-------~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 162 LYIVLGQRAGR---------AEHGTAGVAVGMLVAALIVLPIGAAQAG-------PALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHcchhcc---------cCCCchHHHHHHHHHHHHHhhhhhhhcc-------hhhcChHHHHHHHHHHHHhcccchH
Confidence 99999998753 1244444455555666666666543222 1223444555556678899999998
Q ss_pred H-HHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhhh
Q 027256 161 S-MWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWER 222 (226)
Q Consensus 161 ~-~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~~ 222 (226)
. +.++|+.++.+.+++..+||.++.+.|++++||++|..||+|++.++.+..-.++.-+|+.
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~~ 288 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKPA 288 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCCC
Confidence 6 5689999999999999999999999999999999999999999999987765555544443
No 32
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.53 E-value=1.6e-13 Score=111.28 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=128.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc---------------------------
Q 027256 10 YINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------------------------- 62 (226)
Q Consensus 10 ~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------------------------- 62 (226)
.+++|.+...++..|+++++.+..+.+||+++.|+++..+...|+......|.
T Consensus 1 ~isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~ 80 (222)
T TIGR00803 1 KLSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMF 80 (222)
T ss_pred CccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccc
Confidence 36899999999999999999999999999999999999999999885322211
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcc----hhhhhcCC--
Q 027256 63 SFHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNE----VDYLSRTP-- 136 (226)
Q Consensus 63 ~~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-- 136 (226)
...+.|....+.++.+.+...++.++..++ ++.+ +|.+....++..+.....++ .......+
T Consensus 81 g~~~~g~~~~l~a~~~~~~~~~y~e~~~k~-------~~~~-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (222)
T TIGR00803 81 GNPVVGLSAVLSALLSSGFAGVYFEKILKD-------GDTM-----FWSRNLQLPLFGLFSTFSVLLWSDGTLISNFGFF 148 (222)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHHHHcccC-------CCCc-----hHHHHHHHHHHHHHHHHHHHhhcccchhhccCcc
Confidence 123466666666777777777777776442 1222 44444444444433322221 11111111
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256 137 LLRLPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 214 (226)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~ 214 (226)
...+...|..++.. ...+.+...++|+.++.+.+++...|++++.++++++|||+++..+|.|..+++.|+.+|
T Consensus 149 ~~~~~~~~~~~~~~----a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 149 IGYPTAVWIVGLLN----VGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred cCCchHHHHHHHHH----HhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 11122223233222 223333445799999999999999999999999999999999999999999999887654
No 33
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.38 E-value=8.9e-12 Score=101.39 Aligned_cols=203 Identities=16% Similarity=0.179 Sum_probs=151.1
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc----------ccchHHHHHHHHH
Q 027256 6 CSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL----------SFHAVGYAWQIIN 75 (226)
Q Consensus 6 ~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~----------~~~~~G~~~~l~s 75 (226)
.++.+.+++.+|++|....+||.+++.-+++++++.++|+++.....|++++...|. +-...|+.+.+++
T Consensus 105 vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~iitGdllIiia 184 (372)
T KOG3912|consen 105 VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSIITGDLLIIIA 184 (372)
T ss_pred HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccchhhhHHHHHH
Confidence 468889999999999999999999999999999999999999999999998865432 2236999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHH-----hcchhhhh---cCCCC--------c
Q 027256 76 CFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIV-----FNEVDYLS---RTPLL--------R 139 (226)
Q Consensus 76 ~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~~~~--------~ 139 (226)
-+.-|.+++..+|..++. +.+|.+.+.|.-+++..++..+... .++..+-- .+.++ .
T Consensus 185 qiivaiQ~v~Eek~l~~~-------nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~~e 257 (372)
T KOG3912|consen 185 QIIVAIQMVCEEKQLKKS-------NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAALQE 257 (372)
T ss_pred HHHHHHHHHHHHhhhhhc-------cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHhcC
Confidence 999999999999988763 5677777766665554333322221 12111000 00000 0
Q ss_pred chhHHHHHHHHHHHH--HHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 140 LPSFWLVMTLSGFLG--LAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 140 ~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
.|.. .+...+... ...|++.....|..|+++-.++-.+|..+..++++....|.+...|+.|.++.+.|.+.|+..
T Consensus 258 ~p~l--~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~i 335 (372)
T KOG3912|consen 258 SPSL--AVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQI 335 (372)
T ss_pred Cchh--HHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111222211 224566666779999999999999999999999999999999999999999999999998643
No 34
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.22 E-value=1.8e-10 Score=83.30 Aligned_cols=134 Identities=12% Similarity=0.142 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 027256 69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 148 (226)
Q Consensus 69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (226)
.+++++|+++++...+..|--.+ +.||-.-.+.-++....+........|+++.. ...++..|..+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~---------~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~----~~~~~k~~lfli 71 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE---------GVDPDFATTIRTIVILIFLLIVLLVTGNWQAG----GEIGPKSWLFLI 71 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------ccCccHHHHHHHHHHHHHHHHHHHhcCceecc----cccCcceehhhh
Confidence 57999999999999888887654 35666555666677777777777777776432 223455688889
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
++|+.+-.--++.|.+++.=.+..+..+.-..++++++++++++||++|..+|+|++++.+|.++.+
T Consensus 72 lSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 72 LSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9998887777777788888777777777888999999999999999999999999999999977643
No 35
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.18 E-value=2.8e-10 Score=83.05 Aligned_cols=123 Identities=17% Similarity=0.308 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHH
Q 027256 78 LTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAI 157 (226)
Q Consensus 78 ~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (226)
++|.+.+..|+..+ +.++....++....+.+ .++.....+..+ ... .++..+....+.+.++...
T Consensus 2 ~~a~~~~~~k~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 66 (126)
T PF00892_consen 2 SWAIYSVFSKKLLK---------KISPLSITFWRFLIAGI-LLILLLILGRKP--FKN---LSPRQWLWLLFLGLLGTAL 66 (126)
T ss_pred eeeeHHHHHHHHhc---------cCCHHHHHHHHHHHHHH-HHHHHHhhcccc--ccC---CChhhhhhhhHhhccceeh
Confidence 56778888888765 37889999998888887 666665554332 111 1223355566666665444
Q ss_pred HHH-HHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 158 SFT-SMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 158 ~~~-~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
++. .+.+.++.++...+.+.+++|+++.++++++++|+++..+++|+++++.|.++..
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 67 AYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 444 4578999999999999999999999999999999999999999999999887653
No 36
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=98.99 E-value=7.2e-11 Score=94.99 Aligned_cols=197 Identities=9% Similarity=0.051 Sum_probs=148.0
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--------ccchHHHHHHHHH
Q 027256 4 FICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--------SFHAVGYAWQIIN 75 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s 75 (226)
-..|.||.++...+.+-+-..+.+++++++++|.|.++.++.+++++..|+.++...|. +.+..|++++++.
T Consensus 95 vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~G 174 (336)
T KOG2766|consen 95 VVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAG 174 (336)
T ss_pred EeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEec
Confidence 35688999999999999999999999999999999999999999999999998765442 2346999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHH-HHHH
Q 027256 76 CFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLS-GFLG 154 (226)
Q Consensus 76 ~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 154 (226)
+-+||..++..+.+.+| .+..+++....+++.++..+. ++.+.. +... -+| + |-...+. ...+
T Consensus 175 ATlYaVSNv~EEflvkn---------~d~~elm~~lgLfGaIIsaIQ-~i~~~~-~~~t-l~w-~---~~i~~yl~f~L~ 238 (336)
T KOG2766|consen 175 ATLYAVSNVSEEFLVKN---------ADRVELMGFLGLFGAIISAIQ-FIFERH-HVST-LHW-D---SAIFLYLRFALT 238 (336)
T ss_pred ceeeeeccccHHHHHhc---------CcHHHHHHHHHHHHHHHHHHH-Hhhhcc-ceee-Eee-h---HHHHHHHHHHHH
Confidence 99999999999888764 566777777777788777776 333221 1111 111 2 1111222 2333
Q ss_pred HHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 155 LAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 155 ~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
.++-|+.. ..+|..|++..++-.....+.++++ -.||-+.++...+..+.+..|.++|+-++
T Consensus 239 MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 239 MFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccc
Confidence 34455544 4578899998887777777887776 67899999999999999999999996543
No 37
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.95 E-value=5.2e-08 Score=82.33 Aligned_cols=140 Identities=11% Similarity=0.093 Sum_probs=103.9
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhH
Q 027256 64 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF 143 (226)
Q Consensus 64 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (226)
....|..+.++++++++...+..|.. . ++++.++.++....+.++..+.....++.++.... ..++..
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---------~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~--~~~~~~ 72 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---------YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTL--IQTPQK 72 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---------CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHH--HcCHHH
Confidence 34589999999999999999999764 2 37899999999999888777766544432221110 011222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
+......++.......+.+.+++++++...++..+..|+++.++++++++|+++..+|+|+++.+.|+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 73 IFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 323333333333345555678999999999999999999999999999999999999999999999987653
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.94 E-value=4.2e-08 Score=82.30 Aligned_cols=133 Identities=11% Similarity=0.076 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 027256 69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 148 (226)
Q Consensus 69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (226)
..+.+++++++|.+.+..|+..++ .++. .++......+...|........ ..+..+ ....|..+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~---------~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~---~~~~~~~~~ 67 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADK---------EPDF--LWWALLAHSVLLTPYGLWYLAQ-VGWSRL---PATFWLLLA 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCc---------hhHH--HHHHHHHHHHHHHHHHHHhccc-CCCCCc---chhhHHHHH
Confidence 568899999999999999987542 1232 3555555666666655432111 111111 122243445
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
..+.......++.+.+.++.++...+.+.+..|+++.+++++++||+++..+|+|+++++.|+.+...
T Consensus 68 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~ 135 (281)
T TIGR03340 68 ISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGL 135 (281)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 55665666666667789999999999999999999999999999999999999999999999876643
No 39
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.93 E-value=6.4e-08 Score=80.01 Aligned_cols=138 Identities=17% Similarity=0.153 Sum_probs=103.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhh-cCCCCcchhHHH
Q 027256 67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLS-RTPLLRLPSFWL 145 (226)
Q Consensus 67 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 145 (226)
.|..+.++++++++...+..|.. . +.++.++.++-.+.+.++..+.....++.++.. +.+.......+.
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~---------~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K---------PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLIL 71 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c---------cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHH
Confidence 48899999999999999999873 2 378999999999988888776654444322110 111111111233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 214 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~ 214 (226)
.+...+++......+.+.+++++++.+.++..+..|+++.+++.++++|+++..+++|+.+.+.|+.+.
T Consensus 72 ~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 72 SLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 445556655555555567899999999999999999999999999999999999999999999997754
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.89 E-value=1.2e-08 Score=79.39 Aligned_cols=197 Identities=15% Similarity=0.140 Sum_probs=137.9
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccc--ccchHHHHHHHHHHHHHH
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDL--SFHAVGYAWQIINCFLTA 80 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a 80 (226)
-...+++.++.+.++.+..|.--|+.+++++.+|+|+..-|+++.++...|+.+.++.|. ..++.|..++..|+...|
T Consensus 69 ~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~~AV~SA~~aA 148 (290)
T KOG4314|consen 69 LYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIACAVGSAFMAA 148 (290)
T ss_pred HHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHHHHHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999887654 456999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCch----hHH-HHH-HHHHHHHHHHHHHHhc-c-hhhhhcCCCCcchhHHHHHHHHHH
Q 027256 81 SYSLTLRRVMDTAKQVTKSGNLNEF----SMV-LLN-NSLSLPLGVLLVIVFN-E-VDYLSRTPLLRLPSFWLVMTLSGF 152 (226)
Q Consensus 81 ~~~i~~~~~~~~~~~~~~~~~~~~~----~~~-~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~l~~~~~ 152 (226)
.|-+..|+...+. ++... .-+ |++ .+.++|.... .+++ | +++. ...+ |.-++-.+.
T Consensus 149 lYKV~FK~~iGnA-------n~Gdaa~FmS~LGF~NL~~~~~~~lIL--~~T~VE~~qsF-A~~P------WG~l~G~A~ 212 (290)
T KOG4314|consen 149 LYKVLFKMFIGNA-------NFGDAAHFMSCLGFFNLCFISFPALIL--AFTGVEHLQSF-AAAP------WGCLCGAAG 212 (290)
T ss_pred HHHHHHHHHhccC-------cchhHHHHHHHHHHHHHHHHhhhHHHH--HHhchHHHHHH-hhCC------chhhhhHHH
Confidence 9999999987643 22211 111 111 1223333222 1222 2 2222 1111 433333333
Q ss_pred HHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 153 LGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
.....|+..-..+....|...|+=..........+..++-+-..+....+|..+++.|.++.-
T Consensus 213 L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLii 275 (290)
T KOG4314|consen 213 LSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILII 275 (290)
T ss_pred HHHHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHhee
Confidence 344445444345667788877776666667777778877777888889999999888866553
No 41
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.71 E-value=1.3e-06 Score=75.81 Aligned_cols=139 Identities=17% Similarity=0.130 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256 66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 145 (226)
Q Consensus 66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (226)
..-+.-.++.-++|+.+.+..|..++ ..+++....+|-..++.++++++.+..+... ..+. .+...|.
T Consensus 12 ~~~~~~~~~~q~~~~~~~~~~k~a~~--------~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~---~~~~-~~~~~~~ 79 (358)
T PLN00411 12 AVFLTAMLATETSVVGISTLFKVATS--------KGLNIYPFLGYSYLLASLLLLPSLFFTNRSR---SLPP-LSVSILS 79 (358)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--------CCCCccHHHHHHHHHHHHHHHHHHHHHHHhc---ccCc-chHHHHH
Confidence 35566777888999999999999885 3688999999988888888888776543211 1111 1122355
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHh------cCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILL------FKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~------f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
.+.+.|+++...+...+..++.+++...+++.+..|+++.++++++ ++|+++..+++|+++++.|+.+...
T Consensus 80 ~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 80 KIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 6666777775444455678999999999999999999999999999 7999999999999999999876543
No 42
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=98.67 E-value=2.4e-06 Score=70.57 Aligned_cols=172 Identities=15% Similarity=0.150 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHhCcccChhHH----HHHHHHHHhhhhhcccccc--------cchHHHHHHHHHHHHHHHHHHHHHH
Q 027256 21 NVTNVITAVGEMYLFNKRHDNRVW----AALFLMIISAISGGITDLS--------FHAVGYAWQIINCFLTASYSLTLRR 88 (226)
Q Consensus 21 ~~~pv~~~i~~~~~~~~~~~~~~~----~al~l~~~Gv~l~~~~~~~--------~~~~G~~~~l~s~~~~a~~~i~~~~ 88 (226)
..+-+.+.+.+.++++|..+..++ .|++++++|+.+.+..|.+ ....|....+++.+.|..|....|.
T Consensus 80 g~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~ 159 (269)
T PF06800_consen 80 GLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKA 159 (269)
T ss_pred hHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 456777899999999998776664 4889999999988764421 1247999999999999999888665
Q ss_pred HhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027256 89 VMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT 168 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (226)
. +.++++..+=+++-.+.-...+....++ ..++ ...|-. ++.|+.=...|.+.+...+..
T Consensus 160 ~-----------~~~~~~~~lPqaiGm~i~a~i~~~~~~~--~~~~------k~~~~n-il~G~~w~ignl~~~is~~~~ 219 (269)
T PF06800_consen 160 F-----------HVSGWSAFLPQAIGMLIGAFIFNLFSKK--PFFE------KKSWKN-ILTGLIWGIGNLFYLISAQKN 219 (269)
T ss_pred c-----------CCChhHhHHHHHHHHHHHHHHHhhcccc--cccc------cchHHh-hHHHHHHHHHHHHHHHhHHhc
Confidence 3 3678888776665555544444443311 1111 112333 344555555677766778899
Q ss_pred chhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH----HHHHHHHHHHH
Q 027256 169 GATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGV 212 (226)
Q Consensus 169 ~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~----iG~~lii~g~~ 212 (226)
+..+.-.++-+..+++++.|+++++|+=|..++ +|.++++.|.+
T Consensus 220 G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 220 GVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred cchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998786644 57777777654
No 43
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.58 E-value=5.8e-08 Score=70.38 Aligned_cols=61 Identities=28% Similarity=0.477 Sum_probs=55.4
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccccccc
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGITDLSF 64 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~~~~~ 64 (226)
..+.|+++.| +...++.++.|+++++++.+++|||++++++.++.++++|++++..+|.+.
T Consensus 51 ~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~~ 111 (113)
T PF13536_consen 51 LFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLTG 111 (113)
T ss_pred HHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhccc
Confidence 3467899999 688899999999999999999999999999999999999999998877653
No 44
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.49 E-value=3.6e-06 Score=60.93 Aligned_cols=103 Identities=22% Similarity=0.355 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHh
Q 027256 113 SLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILL 191 (226)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~ 191 (226)
..+.+.........++..+.++... ..+ |.+.+..|+++...++..+ .+.+..++ ..+....+.|+++.++|.++
T Consensus 6 ~~~~l~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~ 81 (113)
T PF13536_consen 6 LFSVLFLLIILLIRGRLRDLFRALR-RKP--WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLF 81 (113)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHH-hCc--HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555433322110 011 3345555666664455544 57888885 77789999999999999999
Q ss_pred cCCCCCchhHHHHHHHHHHHHHHHhhhh
Q 027256 192 FKVPTSLENSASIFFGLLAGVFFARAKM 219 (226)
Q Consensus 192 f~e~~t~~~~iG~~lii~g~~~~~~~~~ 219 (226)
|+|+++..+++|+++++.|+.+..+.+.
T Consensus 82 ~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 82 FKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999999999999888776543
No 45
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.40 E-value=2.4e-06 Score=63.34 Aligned_cols=122 Identities=19% Similarity=0.182 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 027256 67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 146 (226)
Q Consensus 67 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (226)
.|+.+.+++.++.+...+..|+-.++. .+.+.... . . ..... . .+|. .
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~---------g~~~~~~~-~---~----~~~~~---------~---~~p~---~ 49 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRL---------PLLSHAWD-F---I----AALLA---------F---GLAL---R 49 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhC---------CCccchhH-H---H----HHHHH---------H---hccH---H
Confidence 478899999999998888888865532 11111000 0 0 00000 0 0121 1
Q ss_pred HHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHH--hcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 147 MTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGIL--LFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 147 l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l--~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.++.++.+..+++..| .++|+.++..+..+..+.++...+.++. +|||++|+.+++|+++++.|++..+..++|
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~~ 126 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTTK 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 2455677777777766 5799999999988888888777777775 899999999999999999999988765444
No 46
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.30 E-value=4.2e-06 Score=70.86 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=51.6
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
.++.|+.+.|.+..+-+.....++.++++..++|||++++.+.+..+++.|+.+..
T Consensus 66 ~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 66 LNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 34678899999999999999999999999999999999999999999999998653
No 47
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.29 E-value=3e-05 Score=64.14 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=108.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 027256 65 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 144 (226)
Q Consensus 65 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (226)
+..|+.+++.+-+.++.--.+.|-+. ..++.|+..+-.+.++|+.+......+.+.+.++ ...+|..+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~----------~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~--~~~~p~~~ 72 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLE----------PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQ--LLKQPKTL 72 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHc----------cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH--HHhCcHHH
Confidence 45899999999999999888888764 3578899999989999999888888777665544 22345545
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 145 LVMTLSGFLGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
..+.+++.. ...|...| ++...-....+|.=-+++|.+.+++|.++++|+++..||+..++..+|+..-.+.
T Consensus 73 ~~~~l~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 73 LMLALTALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHHHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 454443332 23466666 4777778889999899999999999999999999999999999999887765544
No 48
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.26 E-value=1.7e-05 Score=65.31 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=77.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHH-HHHHHHHhhcchhHHHHHhhh
Q 027256 101 NLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAIS-FTSMWFLHQTGATTYSLVGSL 179 (226)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~si~~~l 179 (226)
..++++..++..+.+.+...+..... ++ ...|......+.++.... ...+.+++++++...+++...
T Consensus 15 ~~~~~~~~~~r~~~~~l~l~~~~~~~---------~~---~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~ 82 (260)
T TIGR00950 15 QVPLYFAVFRRLIFALLLLLPLLRRR---------PP---LKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALLLYL 82 (260)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhc---------cC---HhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHhh
Confidence 45778888887777777766544321 11 112334445555554444 444578999999999999999
Q ss_pred hhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 180 NKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 180 ~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
.|+++.+++.++++|+++..+++|+.+++.|..+...
T Consensus 83 ~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~ 119 (260)
T TIGR00950 83 APLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLS 119 (260)
T ss_pred hHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhcc
Confidence 9999999999999999999999999999999877643
No 49
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.25 E-value=1.4e-06 Score=63.25 Aligned_cols=56 Identities=23% Similarity=0.417 Sum_probs=52.7
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
+.+.++++++++...++.++.|+++++++++++||+++++++.++.+++.|+.+..
T Consensus 70 ~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 70 LYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999998753
No 50
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.21 E-value=1.7e-06 Score=62.46 Aligned_cols=57 Identities=14% Similarity=0.276 Sum_probs=53.0
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
++...+++++|++.+..+-++.|+++++.+++++|||+++++++++.++++|+++.+
T Consensus 52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 345678999999999999999999999999999999999999999999999998765
No 51
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.20 E-value=0.00014 Score=62.95 Aligned_cols=138 Identities=12% Similarity=0.055 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCC-chhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhH
Q 027256 65 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLN-EFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF 143 (226)
Q Consensus 65 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (226)
++.-..+.+..-.+...+.+..|..+++ .+ |+.+..++.+.+.....+.. ..+ .....+.+. ....
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~---------~~~P~~l~~~~~~~~~l~~~~~~-~~~-~~~~~~~~~--~~~~ 113 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNM---------LPLPWTISSLQLFVGWLFALLYW-ATG-FRKIPRIKS--LKLF 113 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh---------CChhHHHHHHHHHHHHHHHHHHH-HhC-CCCCCCCCC--HHHH
Confidence 4444445555555556667788887753 56 89888888777766554432 222 111101111 1224
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
|..++..|+++.........+++.+++...+++-..+|+++.+++.++++|+++..++.|+++++.|+.+..
T Consensus 114 ~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 114 LKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhee
Confidence 556777788887666555678899999999999999999999999999999999999999999999887654
No 52
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.19 E-value=9.7e-05 Score=62.27 Aligned_cols=129 Identities=16% Similarity=0.081 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256 70 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL 149 (226)
Q Consensus 70 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (226)
+..++-.+.++...+..|...+ +.+|.+..++-.+.+.++.++.....+.. .+. ...|.....
T Consensus 11 ~~~~~~~~iWg~~~~~~K~~~~---------~~~p~~~~~~R~~~a~l~ll~~~~~~~~~-----~~~---~~~~~~~~~ 73 (292)
T PRK11272 11 GALFALYIIWGSTYLVIRIGVE---------SWPPLMMAGVRFLIAGILLLAFLLLRGHP-----LPT---LRQWLNAAL 73 (292)
T ss_pred HHHHHHHHHHhhHHHHHHHHhc---------cCCHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCc---HHHHHHHHH
Confidence 3455677888888888887643 47899999999888888877765543211 111 122444455
Q ss_pred HHHHHHHH-HHHHHHHH-hhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 150 SGFLGLAI-SFTSMWFL-HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 150 ~~~~~~~~-~~~~~~~~-~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
.|.+.... ....+... +..++...++..+..|+++.+++.+ ++|+++..+++|+.+.+.|+.+...
T Consensus 74 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~ 141 (292)
T PRK11272 74 IGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNS 141 (292)
T ss_pred HHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhc
Confidence 56555433 33334555 8888889999999999999999985 7999999999999999999876643
No 53
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.12 E-value=0.0002 Score=60.61 Aligned_cols=124 Identities=7% Similarity=-0.028 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHH
Q 027256 77 FLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLA 156 (226)
Q Consensus 77 ~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 156 (226)
.+...+.++.|...++. ..|+.+.+.....+.....+. ...+..+ .+. .+...|..+...|++...
T Consensus 12 ~~~~~~~~~NK~~l~~~--------~~P~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~-~~~~~~~~~~~~g~~~~~ 77 (302)
T TIGR00817 12 FLNVYFNIYNKKLLNVF--------PYPYFKTLISLAVGSLYCLLS-WSSGLPK----RLK-ISSALLKLLLPVAIVHTI 77 (302)
T ss_pred HHHHHHHHHHHHHHhhC--------ChhHHHHHHHHHHHHHHHHHH-HHhCCCC----CCC-CCHHHHHHHHHHHHHHHH
Confidence 33444566777776531 246777777666665544433 1111111 111 112335566666777655
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256 157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 214 (226)
Q Consensus 157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~ 214 (226)
.......+++++++...+++....|+++.+++.++++|+++..+++|.++++.|+.+.
T Consensus 78 ~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 78 GHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhh
Confidence 4445557899999999999999999999999999999999999999999999988654
No 54
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.10 E-value=0.00017 Score=60.90 Aligned_cols=129 Identities=15% Similarity=0.028 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHH
Q 027256 67 VGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLV 146 (226)
Q Consensus 67 ~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (226)
.+++.+++++++++...+..|...+ +++|....++-...+.++..+.. ... .. .. .. +..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~~~k~~~~---------~~~P~~~~~~R~~~a~l~l~~~~---~~~-~~---~~-~~---~~~ 63 (295)
T PRK11689 4 KATLIGLIAILLWSTMVGLIRGVSE---------SLGPVGGAAMIYSVSGLLLLLTV---GFP-RL---RQ-FP---KRY 63 (295)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHc---------cCChHHHHHHHHHHHHHHHHHHc---ccc-cc---cc-cc---HHH
Confidence 5677889999999999888887654 47899988887777776666432 111 10 00 01 112
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 147 MTLSGFLGLAISFTSMWFL----HQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 147 l~~~~~~~~~~~~~~~~~~----~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
++..++.........+... +..++...+++.++.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus 64 ~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~ 136 (295)
T PRK11689 64 LLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVL 136 (295)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhhee
Confidence 2222332222222222333 35677888899999999999999999999999999999999999977654
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.02 E-value=6.4e-05 Score=54.24 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=52.6
Q ss_pred HHHHHHHHHH-HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 153 LGLAISFTSM-WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 153 ~~~~~~~~~~-~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
.+....+..+ .++++.+...+...-.+.++.+.++|+++|||++|..+++|+++++.|+....
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 3444444444 57889999988888889999999999999999999999999999999987654
No 56
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=97.97 E-value=0.00038 Score=58.85 Aligned_cols=124 Identities=12% Similarity=0.041 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHH
Q 027256 70 AWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTL 149 (226)
Q Consensus 70 ~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 149 (226)
.+.++++++++...+..|...+ +++|....++-...+.++.++.. ..+ +. . +..+..
T Consensus 7 l~~l~~~~~Wg~~~~~~k~~~~---------~~~p~~~~~~R~~~a~~~l~~~~--~~~-----~~----~---~~~~~~ 63 (299)
T PRK11453 7 VLALLVVVVWGLNFVVIKVGLH---------NMPPLMLAGLRFMLVAFPAIFFV--ARP-----KV----P---LNLLLG 63 (299)
T ss_pred HHHHHHHHHHhhhHHHHHHHHh---------cCCHHHHHHHHHHHHHHHHHHHh--cCC-----CC----c---hHHHHH
Confidence 5678889999999899987654 47899999887776655444322 110 00 1 111222
Q ss_pred HHHHHHHHHHH-HHHHHhh-cchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 150 SGFLGLAISFT-SMWFLHQ-TGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 150 ~~~~~~~~~~~-~~~~~~~-~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
.|+......+. .+...++ .++...+++....|+++.++++++++|+++..+++|+++.+.|+.+...
T Consensus 64 ~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 64 YGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 23333333332 2345565 5778888899999999999999999999999999999999999776643
No 57
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.79 E-value=0.00097 Score=56.54 Aligned_cols=128 Identities=16% Similarity=0.194 Sum_probs=87.8
Q ss_pred HHHHHHHHHHhhhhhhhcccCCC-CchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 027256 80 ASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAIS 158 (226)
Q Consensus 80 a~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (226)
..+.+..|++.++. ... .++-+.+.+.........+.....+.. .+. ..| +......+++-...+
T Consensus 13 ~~~g~~qE~i~~~~------~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~~-----~~~-~~~--~~~~~~~~~~~~~~~ 78 (303)
T PF08449_consen 13 CSYGILQEKIMTTP------YGSPFPLFLTFVQFAFNALFSFILLSLFKFP-----KSR-KIP--LKKYAILSFLFFLAS 78 (303)
T ss_pred HHHHHHHHHHHcCC------CCCcccHHHHHHHHHHHHHHHHHHHHhcccc-----CCC-cCh--HHHHHHHHHHHHHHH
Confidence 34667788877642 122 366666766666666655554443300 011 111 222233345555555
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256 159 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 159 ~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~ 221 (226)
.....+++.++..+..+.-..+++.+.++++++++++.+..++.+..++..|+.+....+.++
T Consensus 79 ~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~ 141 (303)
T PF08449_consen 79 VLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS 141 (303)
T ss_pred HHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence 566678899999999999999999999999999999999999999999999999887665443
No 58
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.78 E-value=0.00063 Score=57.39 Aligned_cols=132 Identities=11% Similarity=0.088 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 027256 68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 147 (226)
Q Consensus 68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (226)
|++++++++++++...+..|+.. + .++.+... ...+..+.........+. ....+..+..-
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g---------~~~~~~~~--~~~g~l~~~~~~~~~~~~-------~~~~~~~~~~g 62 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-G---------GPYSQTLG--TTFGALILSIAIAIFVLP-------EFWALSIFLVG 62 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-C---------CHHHHHHH--HHHHHHHHHHHHHHHhCC-------cccccHHHHHH
Confidence 67899999999999999998863 1 22323321 223333333333222221 11123334333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCCCCchh----HHHHHHHHHHHHHHHhhh
Q 027256 148 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLEN----SASIFFGLLAGVFFARAK 218 (226)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~-l~~v~~~i~~~l~f~e~~t~~~----~iG~~lii~g~~~~~~~~ 218 (226)
.++|..=...|++.+.+.|.++........+ +.++..++.+.++|+|..+..+ .+|.++++.|.++....+
T Consensus 63 ~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~ 138 (290)
T TIGR00776 63 LLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSK 138 (290)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecc
Confidence 3444443345666677899999888877777 8888999999999999999999 999999999988876654
No 59
>COG2510 Predicted membrane protein [Function unknown]
Probab=97.70 E-value=8.8e-06 Score=59.21 Aligned_cols=56 Identities=20% Similarity=0.324 Sum_probs=51.5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
+.+.|++.-++|...-+-.++|+++.+++++++|||++.++++++.++++|+++.+
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 56778888888888889999999999999999999999999999999999998764
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.68 E-value=5.7e-05 Score=55.95 Aligned_cols=59 Identities=10% Similarity=0.207 Sum_probs=53.3
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHH--HhCcccChhHHHHHHHHHHhhhhhccc
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMY--LFNKRHDNRVWAALFLMIISAISGGIT 60 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~--~~~~~~~~~~~~al~l~~~Gv~l~~~~ 60 (226)
++.+.+++++|++.+..+.+..+..+++.++. ++||++++++++++.++++|+.++..+
T Consensus 63 ~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 63 LCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 46778999999999999999999999888885 899999999999999999999988653
No 61
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.67 E-value=0.0034 Score=51.94 Aligned_cols=140 Identities=20% Similarity=0.161 Sum_probs=89.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256 66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 145 (226)
Q Consensus 66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (226)
..+....+..++.++......|...++ +.+.....++....+.+...+... .+... ..+.. .+ +.
T Consensus 6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~-~~--~~ 70 (292)
T COG0697 6 LLGLLALLLWGLLWGLSFIALKLAVES--------LDPFLFAAALRFLIAALLLLPLLL--LEPRG--LRPAL-RP--WL 70 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc--------cCChHHHHHHHHHHHHHHHHHHHH--hhccc--ccccc-cc--hH
Confidence 456677777778888877777776432 234455555455545544222111 11100 11111 11 22
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHH-HhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 146 VMTLSGFLGL-AISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGI-LLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 146 ~l~~~~~~~~-~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~-l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.....+.++. ...+..+.+++++++...+.+....|+++.+++. ++++|+++..++.|..+.+.|+++....+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~ 147 (292)
T COG0697 71 LLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGG 147 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCc
Confidence 3334444444 4444455679999999999999999999999997 6679999999999999999998877655443
No 62
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.65 E-value=0.00039 Score=50.73 Aligned_cols=67 Identities=15% Similarity=0.248 Sum_probs=50.2
Q ss_pred HHHHHHHHHHH-HHHhhcchhH-HHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 152 FLGLAISFTSM-WFLHQTGATT-YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~-~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
+..+..++..+ .++|+.+... +++..-+..+.++++|+++|||++|+.+++|+++++.|++..+...
T Consensus 37 i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 37 LVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 33444444444 4667666543 4455667889999999999999999999999999999988776544
No 63
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.61 E-value=0.00051 Score=49.39 Aligned_cols=67 Identities=10% Similarity=0.066 Sum_probs=51.2
Q ss_pred HHHHHHHHHHH-HHHhhcchhH-HHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 152 FLGLAISFTSM-WFLHQTGATT-YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~-~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
+.++.+++..+ .++|+.+... +++..-+..+.+++.|+++|||++|+.+++|+++++.|++..+..+
T Consensus 37 ~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44455555544 4667666543 4555667889999999999999999999999999999988876544
No 64
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.57 E-value=0.00034 Score=57.59 Aligned_cols=77 Identities=13% Similarity=0.096 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.....+.+++-.+-|...+.+++..+|.+..+....|.+++.++++++++++++..||+++.+...|+.+.+.....
T Consensus 17 ~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 17 TLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 34556677777778888888999999999999999999999999999999999999999999999998887766443
No 65
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.52 E-value=0.0025 Score=54.74 Aligned_cols=70 Identities=11% Similarity=0.121 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 148 TLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
++.+++=...||....+.+.++.+..+++.....+++.+++++++++++++.+++|+.+++.|..+....
T Consensus 83 ~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 83 FLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeee
Confidence 3457888889999999999999999999999999999999999999999999999999999997765444
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0003 Score=59.06 Aligned_cols=56 Identities=11% Similarity=0.167 Sum_probs=52.1
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 3 KFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
.++.|..+.|.+..+.+.+++.+..++++..++|||+++.-.+++.++++|..+..
T Consensus 80 ~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV 135 (335)
T KOG2922|consen 80 ANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIV 135 (335)
T ss_pred hhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEE
Confidence 36778899999999999999999999999999999999999999999999998664
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.33 E-value=0.00031 Score=51.26 Aligned_cols=58 Identities=12% Similarity=0.086 Sum_probs=51.9
Q ss_pred ccccccccccchhHHHHHH-HHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027256 2 FKFICSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 59 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~-~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~ 59 (226)
|+-..+++++|++.+-.+- ...-+.+.+.+.++++|++++.+++++.++++|++....
T Consensus 45 ~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l 103 (120)
T PRK10452 45 IFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKS 103 (120)
T ss_pred HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhc
Confidence 4456789999999998884 689999999999999999999999999999999988754
No 68
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.24 E-value=0.03 Score=41.93 Aligned_cols=130 Identities=15% Similarity=0.229 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHH
Q 027256 69 YAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMT 148 (226)
Q Consensus 69 ~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 148 (226)
..+++++..+-+.+...+.++.++. -|++.-.+.+...+........+..++. +..+.++ .| |+. .
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~--------gs~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~--~p--~w~-~ 68 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKAL--------GSPLVASFISFGVGFILLLIILLITGRP-SLASLSS--VP--WWA-Y 68 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------CccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhcc--CC--hHH-h
Confidence 4677788888888888877775532 1588888888888888888888777654 2211111 11 322 3
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhh-HHHHHHHHH-hc---CCCCCchhHHHHHHHHHHHH
Q 027256 149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNK-IPLSVAGIL-LF---KVPTSLENSASIFFGLLAGV 212 (226)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~-v~~~i~~~l-~f---~e~~t~~~~iG~~lii~g~~ 212 (226)
..|++|.....+.....++.++.........-. +.+.+++-. +| ++++++.+.+|.++++.|..
T Consensus 69 lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 69 LGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI 137 (138)
T ss_pred ccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence 478888887777777889999988877665544 445555554 33 46899999999999988865
No 69
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.21 E-value=0.0035 Score=44.45 Aligned_cols=64 Identities=19% Similarity=0.249 Sum_probs=49.8
Q ss_pred HHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 154 GLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
+...+|... .++|.++- +.+++.+-...+.+.+.|+++|||++++.+++|+.+++.|++..+..
T Consensus 39 ~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 39 GYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 334444443 35676654 45678888899999999999999999999999999999998876543
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.20 E-value=0.00058 Score=49.12 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=50.7
Q ss_pred cccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027256 3 KFICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 59 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~ 59 (226)
+-..+++++|++.+-.+-. ..-+.+.+.+++++||++++.+++++.++++|++....
T Consensus 46 ~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3456889999999998854 78899999999999999999999999999999998754
No 71
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.04 E-value=0.01 Score=49.37 Aligned_cols=114 Identities=12% Similarity=0.131 Sum_probs=72.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh-hh
Q 027256 102 LNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLR-LPSFWLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVG-SL 179 (226)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~-~l 179 (226)
-+|.+..+-+.+-+.++.+...++. .|.+. ++..|..-.++|++=.+.+...+.+.++.+-.+...++ -.
T Consensus 10 G~~~~Q~lG~t~Gali~alv~~~~~--------~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~ 81 (269)
T PF06800_consen 10 GKPANQILGTTIGALIFALVVFLFR--------QPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGL 81 (269)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHh--------CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhH
Confidence 3567777666666666666554442 22222 23344455566665555555555556655555444444 25
Q ss_pred hhHHHHHHHHHhcCCCCCchhHH----HHHHHHHHHHHHHhhhhhhhc
Q 027256 180 NKIPLSVAGILLFKVPTSLENSA----SIFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 180 ~~v~~~i~~~l~f~e~~t~~~~i----G~~lii~g~~~~~~~~~~~~~ 223 (226)
+.+.+.++|+++|||.-+..+++ ++++++.|..+-+++++++++
T Consensus 82 QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~ 129 (269)
T PF06800_consen 82 QLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDK 129 (269)
T ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccc
Confidence 77889999999999988876655 778888888888777666553
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.00 E-value=0.036 Score=39.72 Aligned_cols=63 Identities=16% Similarity=0.228 Sum_probs=49.3
Q ss_pred HHHHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256 152 FLGLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 214 (226)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~ 214 (226)
+.+..+++..+ .++|+.+. ..+++..-+..+.+++.|+++|||++|+.+++|+++++.|++..
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 44445555544 46676664 44677778888999999999999999999999999999998764
No 73
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.00 E-value=0.0012 Score=47.06 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=49.0
Q ss_pred cccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 3 KFICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 3 ~~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
+-..+++++|++.+-.+=. ..-+.+.+.+.+++||++++.+++++.++++|++...
T Consensus 45 ~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 45 LLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 3456789999998877665 8889999999999999999999999999999998764
No 74
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.94 E-value=0.026 Score=48.68 Aligned_cols=142 Identities=13% Similarity=0.050 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256 66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 145 (226)
Q Consensus 66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (226)
..|+++.++++++++...+-.|+ .++.+. .+-|......+-+.+|..... +..++..+..+.. ++..+.
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w~w------E~~W~v~gi~~wl~~~~~~g~-~~~~~f~~~~~~~---~~~~~~ 74 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKWSW------ETMWSVGGIFSWLILPWLIAA-LLLPDFWAYYSSF---SGSTLL 74 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCCch------hHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHhc---CHHHHH
Confidence 58999999999999999888887 332110 011332222222222221111 1122332222211 233344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCC---Cc----hhHHHHHHHHHHHHHHHhh
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPT---SL----ENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~---t~----~~~iG~~lii~g~~~~~~~ 217 (226)
.-.++|.+=...|...+...|..+-.....+ .-+..+.+++++.+++||-. +. ...+|+++++.|..+.+++
T Consensus 75 ~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~A 154 (345)
T PRK13499 75 PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRA 154 (345)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4444555444455555555665554433322 33677899999999998643 33 3567999999999988885
Q ss_pred h
Q 027256 218 K 218 (226)
Q Consensus 218 ~ 218 (226)
.
T Consensus 155 g 155 (345)
T PRK13499 155 G 155 (345)
T ss_pred h
Confidence 3
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.91 E-value=0.0015 Score=46.80 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=47.3
Q ss_pred ccccccccchhHHHHHHH-HHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027256 4 FICSLKYINVAMVTVLKN-VTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 57 (226)
Q Consensus 4 ~~~al~~i~~~~~~il~~-~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~ 57 (226)
-..+++++|++.+-.+=. ..-+.+.+.+.+++||++++.|+.++.+++.|++..
T Consensus 52 Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 52 LSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 346789999998776654 778889999999999999999999999999999865
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.90 E-value=0.013 Score=41.80 Aligned_cols=65 Identities=14% Similarity=0.248 Sum_probs=49.8
Q ss_pred HHHHHHHHHHH-HHHhhcch-hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 152 FLGLAISFTSM-WFLHQTGA-TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 152 ~~~~~~~~~~~-~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
+.++..++..+ .++|..+. ..+++..-+..+.+.+.|+++|||++|+.+++|+++++.|++..+.
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 33444444443 45666554 4567788889999999999999999999999999999999887643
No 77
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=96.89 E-value=0.058 Score=45.46 Aligned_cols=105 Identities=7% Similarity=-0.032 Sum_probs=74.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256 66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 145 (226)
Q Consensus 66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (226)
..|..+.+++.++++......|...+ +.++++..++-...+.++..+....... ..+ ...|.
T Consensus 11 ~~~~~~~~la~~~~~~~~~~~K~~~~---------~~~~~~~~~~R~~~a~l~l~~~~~~~~~-----~~~----~~~~~ 72 (293)
T PRK10532 11 WLPILLLLIAMASIQSGASLAKSLFP---------LVGAPGVTALRLALGTLILIAIFKPWRL-----RFA----KEQRL 72 (293)
T ss_pred chHHHHHHHHHHHHHhhHHHHHHHHH---------HcCHHHHHHHHHHHHHHHHHHHHhHHhc-----cCC----HHHHH
Confidence 58899999999999999998888765 3688999999888888777654321110 111 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHH
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAG 188 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~ 188 (226)
..+..|.+....++..+.+++++++...++.....|+++.+++
T Consensus 73 ~~~~~g~~~~~~~~~~~~al~~~~~~~a~~l~~t~Pi~~~ll~ 115 (293)
T PRK10532 73 PLLFYGVSLGGMNYLFYLSIQTVPLGIAVALEFTGPLAVALFS 115 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHh
Confidence 3334444444455555678899999999999999998888776
No 78
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=96.85 E-value=0.056 Score=46.25 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcch--hh-hhcCC--CCcchhHHH
Q 027256 71 WQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEV--DY-LSRTP--LLRLPSFWL 145 (226)
Q Consensus 71 ~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~--~~~~~~~~~ 145 (226)
..+...+-.+......|...++. +.++.+-+.++.+-+.-+++.....+..+.. +. ..+.. -+.++....
T Consensus 19 ~l~~~t~~~~~l~l~l~ys~~~~-----~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l 93 (345)
T KOG2234|consen 19 SLIVLTAQNTALTLLLRYSRTRE-----KPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETL 93 (345)
T ss_pred HHHHHHHHHhhHHHHHHHHhcCC-----CCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHH
Confidence 33334444455555555543321 2356777777777777777776665543211 11 10111 011222233
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHh
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
-+.+-++.-.+-|...+..++..+|.+.++...+|...+.+++++++++.++.+||...++...|+...+.
T Consensus 94 k~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~ 164 (345)
T KOG2234|consen 94 KVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQL 164 (345)
T ss_pred HHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 44555566666676666789999999999999999999999999999999999999999999999888883
No 79
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.81 E-value=0.29 Score=42.33 Aligned_cols=209 Identities=11% Similarity=0.105 Sum_probs=108.7
Q ss_pred ccccccchhHHHHHH-HHHHHHHHHHHHHHhCccc---C----hhHHHHHHHHHHhhhhhcc----ccc--------ccc
Q 027256 6 CSLKYINVAMVTVLK-NVTNVITAVGEMYLFNKRH---D----NRVWAALFLMIISAISGGI----TDL--------SFH 65 (226)
Q Consensus 6 ~al~~i~~~~~~il~-~~~pv~~~i~~~~~~~~~~---~----~~~~~al~l~~~Gv~l~~~----~~~--------~~~ 65 (226)
.+.+++.+|...-+. .++-+...++..++++|-. + ..-.++++++++|+++.+. .|. +++
T Consensus 92 ~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~~~~~~~~~~ 171 (345)
T PRK13499 92 LTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKMGIKKAEEFN 171 (345)
T ss_pred HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccccc
Confidence 345555555554443 5666777788888888654 2 2357888999999998865 332 122
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHH----HHHHHHHHHHHH---hcc-hhhhhcCC
Q 027256 66 -AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNS----LSLPLGVLLVIV---FNE-VDYLSRTP 136 (226)
Q Consensus 66 -~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~---~~~-~~~~~~~~ 136 (226)
..|..+++++.+.++.|......-..-.+ ...+.+.+++....-+.. -++...++++.. .++ .....+..
T Consensus 172 ~~KGi~ialisgi~~~~f~~~~~~~~~~~~-~a~~~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~~~~~~~~~~~ 250 (345)
T PRK13499 172 LKKGLILAVMSGIFSACFSFAMDAGKPMHE-AAAALGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKNKDLSLKADFS 250 (345)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhhccchhh-hhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccchhcc
Confidence 59999999999999999854433221100 000123444332222111 111111111111 111 10011111
Q ss_pred CCcchhHHHHHHHHHHHHH---HHHHHHHHHHhhcchhHHHH---Hh-hhhhHHHHHHHHHhcCCCCC------chhHHH
Q 027256 137 LLRLPSFWLVMTLSGFLGL---AISFTSMWFLHQTGATTYSL---VG-SLNKIPLSVAGILLFKVPTS------LENSAS 203 (226)
Q Consensus 137 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~si---~~-~l~~v~~~i~~~l~f~e~~t------~~~~iG 203 (226)
.. .+..+-..++..+.|. ..++.....-++.+.....+ ++ .+.-+++.+.|+ +++|.=+ ...++|
T Consensus 251 ~~-~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G 328 (345)
T PRK13499 251 LA-KPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLG 328 (345)
T ss_pred cc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHH
Confidence 10 0111222222222232 22333334445554433333 34 566688889999 4888766 556889
Q ss_pred HHHHHHHHHHHHhh
Q 027256 204 IFFGLLAGVFFARA 217 (226)
Q Consensus 204 ~~lii~g~~~~~~~ 217 (226)
.++++.|..+....
T Consensus 329 ~vliI~g~~lig~~ 342 (345)
T PRK13499 329 CVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999888776543
No 80
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.63 E-value=0.0035 Score=44.46 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=48.2
Q ss_pred cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256 5 ICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 60 (226)
Q Consensus 5 ~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~ 60 (226)
..|++++|++.+-.+ .....+.+.+.+++++||+.++.+++++.++++|++.....
T Consensus 48 s~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 48 SLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 467899999987655 46778889999999999999999999999999999876543
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.62 E-value=0.021 Score=48.50 Aligned_cols=117 Identities=17% Similarity=0.193 Sum_probs=78.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHH
Q 027256 65 HAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFW 144 (226)
Q Consensus 65 ~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (226)
...|..+++.++++.+......|+-..+.+. .+...-+ +..+. ..++..|
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~----~~~~~~~---------------------~~~~~-----l~~~~W~ 54 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPR----GSLRAGS---------------------GGRSY-----LRRPLWW 54 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccccccc---------------------hhhHH-----HhhHHHH
Confidence 4689999999999999998888886554321 0010000 00000 1122223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 145 LVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
..++. ...|...++ .++...++...+.++.+.-+++.+++-.+++|+++..++.|+++++.|....-
T Consensus 55 ~G~~~-~~~g~~~~~---~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 55 IGLLL-MVLGEILNF---VALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHHH-HhcchHHHH---HHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 33332 233444444 35667788888888889999999999999999999999999999999976543
No 82
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.61 E-value=0.0085 Score=41.69 Aligned_cols=54 Identities=19% Similarity=0.250 Sum_probs=29.0
Q ss_pred HHHHHHHHH-HHHhhcchhHH-HHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHH
Q 027256 154 GLAISFTSM-WFLHQTGATTY-SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFG 207 (226)
Q Consensus 154 ~~~~~~~~~-~~~~~~~~~~~-si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~li 207 (226)
+...++..+ .++|+.+...+ .+..-+..+.+.+.|+.+|||++|..+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444444444 46777766555 5666788899999999999999999999999874
No 83
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=96.50 E-value=0.0042 Score=46.78 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=52.4
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
++++..+++.+.-+++++.....+.+.+++.++++|+++..++.++.+.+.|+.++.
T Consensus 96 ~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 96 LSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 355677889999999999999999999999999999999999999999999998764
No 84
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.16 E-value=0.0093 Score=48.73 Aligned_cols=51 Identities=12% Similarity=0.248 Sum_probs=47.7
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhh
Q 027256 5 ICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAI 55 (226)
Q Consensus 5 ~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~ 55 (226)
+.++.++|-+.+.++.++.|.+.++.++++++|+++..||.++..++.++.
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999999999999888776
No 85
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=96.14 E-value=0.0025 Score=52.46 Aligned_cols=67 Identities=15% Similarity=0.172 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
+=|+.|+......|++.++.+-..+++.....|++++++++++++|+.|....+|..+.+.|+++..
T Consensus 102 LRg~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIv 168 (346)
T KOG4510|consen 102 LRGFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIV 168 (346)
T ss_pred eehhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEe
Confidence 3344454444444556788888888899999999999999999999999999999999999987664
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.12 E-value=0.0045 Score=43.10 Aligned_cols=49 Identities=12% Similarity=0.255 Sum_probs=27.7
Q ss_pred ccccccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHH
Q 027256 2 FKFICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLM 50 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~ 50 (226)
++-..+++++|++.+-.+ .....+.+.+.+.+++||++++.|+.++.++
T Consensus 44 ~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 44 YFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 345678999999998665 5699999999999999999999999998764
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.77 E-value=0.0014 Score=53.28 Aligned_cols=178 Identities=16% Similarity=0.194 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHhCcccChhH----HHHHHHHHHhhhhhccccc--------ccchHHHHHHHHHHHHHHHHHHHHHH
Q 027256 21 NVTNVITAVGEMYLFNKRHDNRV----WAALFLMIISAISGGITDL--------SFHAVGYAWQIINCFLTASYSLTLRR 88 (226)
Q Consensus 21 ~~~pv~~~i~~~~~~~~~~~~~~----~~al~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s~~~~a~~~i~~~~ 88 (226)
..+-+-+-+++.+.++|..+..+ .+|++++++|+.+.++.|. +.--.|....+.|.+.|-.|.+..+.
T Consensus 94 G~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~GYv~yvvl~~~ 173 (288)
T COG4975 94 GMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLGYVGYVVLFQL 173 (288)
T ss_pred hhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccceeeeEeeecc
Confidence 34566778889999999877666 4688899999999887653 11137877777899999998776655
Q ss_pred HhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 027256 89 VMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAISFTSMWFLHQT 168 (226)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 168 (226)
. +.+.++..+-++.-.....+.+....+|.. .+...|..+ +.|+.=...|...+.+.++.
T Consensus 174 f-----------~v~g~saiLPqAiGMv~~ali~~~~~~~~~--------~~K~t~~ni-i~G~~Wa~GNl~ml~a~~~~ 233 (288)
T COG4975 174 F-----------DVDGLSAILPQAIGMVIGALILGFFKMEKR--------FNKYTWLNI-IPGLIWAIGNLFMLLAAQKV 233 (288)
T ss_pred c-----------cccchhhhhHHHHHHHHHHHHHhhcccccc--------hHHHHHHHH-hhHHHHHhhHHHHHHhhhhh
Confidence 3 356677666565555555454444332211 112224333 44444445566666666666
Q ss_pred chhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH----HHHHHHHHHHHHHHhhh
Q 027256 169 GATTYSLVGSLNKIPLSVAGILLFKVPTSLENS----ASIFFGLLAGVFFARAK 218 (226)
Q Consensus 169 ~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~----iG~~lii~g~~~~~~~~ 218 (226)
+-.+.=.++-+--+.+++-|+++++|+=|..++ +|+++++.|..+....|
T Consensus 234 GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~K 287 (288)
T COG4975 234 GVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIAK 287 (288)
T ss_pred ceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhheec
Confidence 655554555667788889999999999887765 47888888877665443
No 88
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=94.75 E-value=0.019 Score=46.83 Aligned_cols=132 Identities=10% Similarity=0.115 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 027256 68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 147 (226)
Q Consensus 68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (226)
++..+++=++.++....+..|... +|.+...-+++-++.+.++..++. + | ..+...+..-
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG-----------~p~qQ~lGtT~GALifaiiv~~~~-~-------p-~~T~~~~iv~ 62 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG-----------KPYQQTLGTTLGALIFAIIVFLFV-S-------P-ELTLTIFIVG 62 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC-----------ChhHhhhhccHHHHHHHHHHheee-c-------C-ccchhhHHHH
Confidence 466778888888887666655432 466666556666666655544332 1 1 1122223333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHhh-hhhHHHHHHHHHhcCCCCCchhHH----HHHHHHHHHHHHHhhhh
Q 027256 148 TLSGFLGLAISFTSMWFLHQTGATTYSLVGS-LNKIPLSVAGILLFKVPTSLENSA----SIFFGLLAGVFFARAKM 219 (226)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~-l~~v~~~i~~~l~f~e~~t~~~~i----G~~lii~g~~~~~~~~~ 219 (226)
.++|.+=.+.+.-.+.+.+.++...+..+++ .+.+-+.++|++.|+|-.++.+.+ ..++++.|.++-+++++
T Consensus 63 ~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~ 139 (288)
T COG4975 63 FISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDR 139 (288)
T ss_pred HHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecc
Confidence 3444433333333344444333333332222 578899999999999998887654 46666777776666655
No 89
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=94.05 E-value=0.039 Score=39.72 Aligned_cols=53 Identities=15% Similarity=0.229 Sum_probs=44.6
Q ss_pred cccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027256 5 ICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 57 (226)
Q Consensus 5 ~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~ 57 (226)
+..++..|+|.+.-+ .++.=++|++.++++.+|..+++.++++.+++.|+.++
T Consensus 59 ~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 59 FLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 345677778777777 48899999999988888888999999999999999765
No 90
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.03 E-value=2 Score=32.54 Aligned_cols=138 Identities=16% Similarity=0.119 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHH
Q 027256 66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWL 145 (226)
Q Consensus 66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (226)
+....+++++..+-..+.-.+.++.+.. + +|.--.+.+...+...+..+.+..++.... .. ..+..|+
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~-------~-spl~As~isf~vGt~~L~~l~l~~~~~~~~-a~---~~~~pwW 71 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYL-------G-SPLLASLISFLVGTVLLLILLLIKQGHPGL-AA---VASAPWW 71 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHc-------C-ChHHHHHHHHHHHHHHHHHHHHHhcCCCch-hh---ccCCchH
Confidence 3556677788888888777777765432 1 454444455566666666666554332221 11 0111242
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-hhhhhHHHHHHHHHh-cC---CCCCchhHHHHHHHHHHHHHHHh
Q 027256 146 VMTLSGFLGLAISFTSMWFLHQTGATTYSLV-GSLNKIPLSVAGILL-FK---VPTSLENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~-~~l~~v~~~i~~~l~-f~---e~~t~~~~iG~~lii~g~~~~~~ 216 (226)
. ..-|++|..+-.+.-...++.++++...+ -.-+-+.+.+++-+= |+ .+++...++|+++++.|.++.+.
T Consensus 72 ~-~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 72 A-WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred H-HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 2 34567776555555455666666655443 334445555555552 33 57999999999999988555443
No 91
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.20 E-value=0.12 Score=44.65 Aligned_cols=72 Identities=11% Similarity=0.024 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 149 LSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
+-|..=++.||....+++.++....++++.....++..+|.++-+|++|....++..+.+.|+++.+..+.+
T Consensus 164 ~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~ 235 (416)
T KOG2765|consen 164 FFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSK 235 (416)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccc
Confidence 445556777888777899999999999999999999999999999999999999999999999888765443
No 92
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=91.00 E-value=0.18 Score=39.97 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 157 ISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 157 ~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
.||....++++++|+.++-....+..+.-++++++++|++.....+..++.+.|+.+.++.
T Consensus 66 aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 66 ANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred CCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEec
Confidence 3565556899999999999999999999999999999999999999999999887776644
No 93
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=90.67 E-value=1.1 Score=32.36 Aligned_cols=48 Identities=17% Similarity=0.028 Sum_probs=35.9
Q ss_pred HhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 027256 165 LHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV 212 (226)
Q Consensus 165 ~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~ 212 (226)
+++.+-.....+ +.+.-+++.+.++++.+|..+...++|+++++.|+.
T Consensus 62 L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~ 110 (113)
T PF10639_consen 62 LGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA 110 (113)
T ss_pred HhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence 444444333333 457788999999888888889999999999998864
No 94
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=89.34 E-value=13 Score=32.14 Aligned_cols=141 Identities=11% Similarity=0.147 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHH----HHHHHHHHHHHHHHHHHhcchhhhhcCCCCcch
Q 027256 66 AVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMV----LLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLP 141 (226)
Q Consensus 66 ~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (226)
..|.++..+.+++++.+.+=.||..+ =+||.. ...+-+-+|....... ..+..+.....+. .
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~-----------WsWEs~Wlv~gi~swli~P~~~a~l~-ip~~~~i~~~~~~--~ 71 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKG-----------WSWESYWLVQGIFSWLIVPWLWALLA-IPDFFSIYSATPA--S 71 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCC-----------ccHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHhCCh--h
Confidence 48999999999999998887877632 234433 3333333444333222 2344333332211 1
Q ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHhhcch-hHHHHHhhhhhHHHHHHHHHhc-------CCCCCchhHHHHHHHHHHHH
Q 027256 142 SFWLVMTLSGFLGLA-ISFTSMWFLHQTGA-TTYSLVGSLNKIPLSVAGILLF-------KVPTSLENSASIFFGLLAGV 212 (226)
Q Consensus 142 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~si~~~l~~v~~~i~~~l~f-------~e~~t~~~~iG~~lii~g~~ 212 (226)
..+...++..+-|.. ++|. ..+|+.+- +..++..-+-.++.+++-.++- +.+-.....+|.++++.|+.
T Consensus 72 ~l~~~~l~G~lWGIGgltfG--l~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa 149 (344)
T PF06379_consen 72 TLFWTFLFGVLWGIGGLTFG--LAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA 149 (344)
T ss_pred HHHHHHHHHHHHhcchhhHh--HHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence 112122221111110 1111 23444332 2222222233333333333332 22334567889999999999
Q ss_pred HHHhhhhhhh
Q 027256 213 FFARAKMWER 222 (226)
Q Consensus 213 ~~~~~~~~~~ 222 (226)
+..++..+|.
T Consensus 150 i~g~AG~~Ke 159 (344)
T PF06379_consen 150 ICGKAGSMKE 159 (344)
T ss_pred HHhHHHHhhh
Confidence 9888864443
No 95
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=86.80 E-value=1.4 Score=36.45 Aligned_cols=132 Identities=18% Similarity=0.216 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHH
Q 027256 68 GYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVM 147 (226)
Q Consensus 68 G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 147 (226)
|+..+++|+++++...+=.||.- ..|+.-.+.+++...+.......+..+.+ .. .| +-
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~----------~gDg~~fQw~~~~~i~~~g~~v~~~~~~p-------~f-~p----~a 58 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD----------TGDGFFFQWVMCSGIFLVGLVVNLILGFP-------PF-YP----WA 58 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc----------CCCcHHHHHHHHHHHHHHHHHHHHhcCCC-------cc-ee----HH
Confidence 56778888888888777776642 23566666666655555555444443221 11 11 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhH-HHHHhhhhhHHHHHHHHH-hcCCC-----CCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 148 TLSGFLGLAISFTSMWFLHQTGATT-YSLVGSLNKIPLSVAGIL-LFKVP-----TSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~-~si~~~l~~v~~~i~~~l-~f~e~-----~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.+.|.+=...|....-.+|.++-.. ..+.+..+-+.+-..|-+ +||++ -....++|+++++.|+.++...|.+
T Consensus 59 mlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~ 138 (254)
T PF07857_consen 59 MLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSE 138 (254)
T ss_pred HhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCC
Confidence 1222222222333222334433222 122233333444443322 45432 2366899999999999999876544
Q ss_pred h
Q 027256 221 E 221 (226)
Q Consensus 221 ~ 221 (226)
+
T Consensus 139 ~ 139 (254)
T PF07857_consen 139 E 139 (254)
T ss_pred C
Confidence 3
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.57 E-value=19 Score=30.62 Aligned_cols=133 Identities=14% Similarity=0.067 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhhhhhhhcccCCC-CchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhHHHHHHHHHHHHHHHH
Q 027256 80 ASYSLTLRRVMDTAKQVTKSGNL-NEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSFWLVMTLSGFLGLAIS 158 (226)
Q Consensus 80 a~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (226)
-.+.++.+|+..+ +...+++++ ++.-+.+-+.+.+......... .+... ..... .|..-...++....-.
T Consensus 27 l~~gVlQEki~T~-~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~---~~k~~---~~~~a--pl~~y~~is~tn~~s~ 97 (327)
T KOG1581|consen 27 LTWGVLQEKIMTR-PYGEDGERFEHSLFLVFCQRLVALLVSYAMLK---WWKKE---LSGVA--PLYKYSLISFTNTLSS 97 (327)
T ss_pred HHHHHHhcceeec-ccCcccccccccHHHHHHHHHHHHHHHHHHHh---ccccc---CCCCC--chhHHhHHHHHhhcch
Confidence 3456667766543 111123344 4555666677777766643322 22211 11111 2334445556666666
Q ss_pred HHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256 159 FTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 159 ~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~ 221 (226)
.+.+.++|+.+=-+..+.-..|-+...+.+.++.+.+.+....+=..++-.|+.++...+..+
T Consensus 98 ~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~ 160 (327)
T KOG1581|consen 98 WCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSD 160 (327)
T ss_pred HHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCC
Confidence 677778999998888888889999999999999999999998888777777877776654433
No 97
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=81.72 E-value=20 Score=30.29 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Q 027256 163 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFA 215 (226)
Q Consensus 163 ~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~ 215 (226)
..+-.++++...+.--...+++-+++..+++.+++..||.|+..+.+|.....
T Consensus 105 vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 105 VGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheee
Confidence 35677888888888778889999999999999999999999999999876554
No 98
>PRK02237 hypothetical protein; Provisional
Probab=81.41 E-value=17 Score=25.91 Aligned_cols=48 Identities=10% Similarity=-0.068 Sum_probs=38.4
Q ss_pred hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 171 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 171 ~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
-..+-.+-+--+.+++.++.+-+++++...++|.++++.|..+..+.+
T Consensus 60 RvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 60 RVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred hHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 345556666677888899999999999999999999999987665443
No 99
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.56 E-value=0.62 Score=39.58 Aligned_cols=120 Identities=15% Similarity=0.171 Sum_probs=74.7
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCCCCchhHHHHHHHHHHHHHHHHHHHhcchhhhhcCCCCcchhH
Q 027256 64 FHAVGYAWQIINCFLTASYSLTLRRVMDTAKQVTKSGNLNEFSMVLLNNSLSLPLGVLLVIVFNEVDYLSRTPLLRLPSF 143 (226)
Q Consensus 64 ~~~~G~~~~l~s~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (226)
.+..|..+++.|+++-+...++.|+-.++..... .+. ++. .++-..++..
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~--~ra------------------------~~g----g~~yl~~~~W 67 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGASG--LRA------------------------GEG----GYGYLKEPLW 67 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhhhc--ccc------------------------cCC----CcchhhhHHH
Confidence 3468888888888888887777776555421100 000 010 0000112222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
|..+ +.-..|=..||..| ...++.-.+.++.+.-+.+.+++..+++|.++....+|+++++.|....-.+
T Consensus 68 w~G~-ltm~vGei~NFaAY---aFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 68 WAGM-LTMIVGEIANFAAY---AFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred HHHH-HHHHHHhHhhHHHH---hhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEe
Confidence 3333 33344555666654 3445555666667888999999999999999999999999999997655433
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=67.65 E-value=28 Score=28.67 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhh
Q 027256 163 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 163 ~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~ 220 (226)
.+++..+=-+.-+--..||+-..++|+++-++...+....=..+|..|+.++-+.++|
T Consensus 104 ~Alq~vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~K 161 (337)
T KOG1580|consen 104 QALQYVPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENK 161 (337)
T ss_pred chhcccCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccc
Confidence 3455544444445557899999999999999999999999999999999988776444
No 101
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=67.51 E-value=11 Score=26.81 Aligned_cols=48 Identities=15% Similarity=0.043 Sum_probs=38.2
Q ss_pred hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 171 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 171 ~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
-..+-.+-+--+.+++.++.+-+++++...++|..+++.|+.+..+.+
T Consensus 58 RvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 58 RVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred hHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 344555666677888889999999999999999999999987665443
No 102
>PRK02237 hypothetical protein; Provisional
Probab=65.54 E-value=13 Score=26.44 Aligned_cols=35 Identities=9% Similarity=-0.033 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhcc
Q 027256 25 VITAVGEMYLFNKRHDNRVWAALFLMIISAISGGI 59 (226)
Q Consensus 25 v~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~ 59 (226)
+...+..+..-|+||++..+++..++.+|+.++..
T Consensus 71 ~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 71 AGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 44456778888899999999999999999987754
No 103
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=64.86 E-value=12 Score=26.56 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256 24 NVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 60 (226)
Q Consensus 24 pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~ 60 (226)
.+...+..+.+-|+||++..+++..++.+|+.++...
T Consensus 68 I~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 68 IVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 4455677778888999999999999999999877543
No 104
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=64.74 E-value=13 Score=27.61 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=37.8
Q ss_pred cccccccchhHHHHHH-HHHHHHHHHHHHH----HhCcccChhHHHHHHHHHHhhhh
Q 027256 5 ICSLKYINVAMVTVLK-NVTNVITAVGEMY----LFNKRHDNRVWAALFLMIISAIS 56 (226)
Q Consensus 5 ~~al~~i~~~~~~il~-~~~pv~~~i~~~~----~~~~~~~~~~~~al~l~~~Gv~l 56 (226)
..+..++.++..+.+. ..+-+..++++.+ ..|++++++|.+++.++.+|+.+
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3445556666555544 5677777888876 45578999999999999999864
No 105
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=62.06 E-value=16 Score=31.30 Aligned_cols=72 Identities=14% Similarity=0.049 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCc----------------------hhH
Q 027256 144 WLVMTLSGFLGLAISFTSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSL----------------------ENS 201 (226)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~----------------------~~~ 201 (226)
|..++-.+++...-.......+++++-....++-.+.|+++.++++++.+|+.+. ..+
T Consensus 83 ~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~ 162 (316)
T KOG1441|consen 83 LRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNL 162 (316)
T ss_pred hHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccH
Confidence 4444444555544444445568999999999999999999999999999998776 456
Q ss_pred HHHHHHHHHHHHHH
Q 027256 202 ASIFFGLLAGVFFA 215 (226)
Q Consensus 202 iG~~lii~g~~~~~ 215 (226)
.|....+.+.+...
T Consensus 163 ~G~i~a~~s~~~~a 176 (316)
T KOG1441|consen 163 FGFISAMISNLAFA 176 (316)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666655443
No 106
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=59.97 E-value=13 Score=26.33 Aligned_cols=29 Identities=7% Similarity=-0.017 Sum_probs=24.0
Q ss_pred HHHHHHHhCcccChhHHHHHHHHHHhhhh
Q 027256 28 AVGEMYLFNKRHDNRVWAALFLMIISAIS 56 (226)
Q Consensus 28 ~i~~~~~~~~~~~~~~~~al~l~~~Gv~l 56 (226)
+.++.+++||+++++...+...+..++.+
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 55677899999999999998888777654
No 107
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.83 E-value=1.3e+02 Score=25.84 Aligned_cols=55 Identities=20% Similarity=0.204 Sum_probs=47.0
Q ss_pred HHHHHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHH
Q 027256 160 TSMWFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFF 214 (226)
Q Consensus 160 ~~~~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~ 214 (226)
+....+++.+--...++-+..++.+.+...++|+..++...|......++|...+
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~ 147 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAA 147 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhh
Confidence 3345678888888999999999999999999999999999999999988776544
No 108
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=55.62 E-value=21 Score=29.17 Aligned_cols=56 Identities=7% Similarity=0.099 Sum_probs=35.6
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027256 2 FKFICSLKYINVAMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISG 57 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~ 57 (226)
||+-.++...+-.++.++..+.-...++-+.+++.++.++.++.++.++++..+++
T Consensus 239 y~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 239 YCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred hccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 34445555666666667777766666777777777777777666666665544443
No 109
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=52.13 E-value=18 Score=25.60 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 027256 185 SVAGILLFKVPTSLENSASIFFGLLAGV 212 (226)
Q Consensus 185 ~i~~~l~f~e~~t~~~~iG~~lii~g~~ 212 (226)
+.+++++++|++++....|.+.++.+++
T Consensus 77 ~~Fsv~~l~E~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGEPLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCCCccHHHHHHHHHHHHhhh
Confidence 3568888999999999999998765543
No 110
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.17 E-value=54 Score=22.99 Aligned_cols=29 Identities=7% Similarity=-0.038 Sum_probs=24.1
Q ss_pred HHHHHHhCcccChhHHHHHHHHHHhhhhh
Q 027256 29 VGEMYLFNKRHDNRVWAALFLMIISAISG 57 (226)
Q Consensus 29 i~~~~~~~~~~~~~~~~al~l~~~Gv~l~ 57 (226)
.++.+++||.+++..+.+...+..|+.++
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 45778899999999999988888887654
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=46.09 E-value=30 Score=24.47 Aligned_cols=37 Identities=8% Similarity=-0.070 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256 24 NVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 60 (226)
Q Consensus 24 pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~ 60 (226)
....++..++.-|.+|++..+.+-.+..+|+.++..+
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3445566777788899999999999999998876543
No 112
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=44.03 E-value=2e+02 Score=24.50 Aligned_cols=41 Identities=17% Similarity=0.075 Sum_probs=29.5
Q ss_pred hhHHHHHHHHHHhhhhhcccccccchHHHHHHHHHHHHHHH
Q 027256 41 NRVWAALFLMIISAISGGITDLSFHAVGYAWQIINCFLTAS 81 (226)
Q Consensus 41 ~~~~~al~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~ 81 (226)
+..-.|+...+.|..++.+.+.++++.=.++.++++.+.=.
T Consensus 18 ~Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~ 58 (303)
T COG1575 18 KTLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQI 58 (303)
T ss_pred cchHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 34567889999999999877667887666666666554433
No 113
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=40.03 E-value=26 Score=21.02 Aligned_cols=20 Identities=15% Similarity=0.094 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHhhhhhhhc
Q 027256 204 IFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 204 ~~lii~g~~~~~~~~~~~~~ 223 (226)
..++++|++.|.++++++++
T Consensus 19 ~~~~Figiv~wa~~p~~k~~ 38 (48)
T cd01324 19 LALFFLGVVVWAFRPGRKKA 38 (48)
T ss_pred HHHHHHHHHHHHhCCCcchh
Confidence 45667888889888766543
No 114
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=37.21 E-value=40 Score=20.05 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 027256 205 FFGLLAGVFFARAKMWER 222 (226)
Q Consensus 205 ~lii~g~~~~~~~~~~~~ 222 (226)
.+++.|.+++.+++++|+
T Consensus 19 ~~~F~gi~~w~~~~~~k~ 36 (49)
T PF05545_consen 19 FVFFIGIVIWAYRPRNKK 36 (49)
T ss_pred HHHHHHHHHHHHcccchh
Confidence 444567777777766543
No 115
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.50 E-value=35 Score=24.92 Aligned_cols=21 Identities=14% Similarity=0.200 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhc
Q 027256 202 ASIFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 202 iG~~lii~g~~~~~~~~~~~~~ 223 (226)
+|++.+++ .+.|..+|+|||+
T Consensus 75 aGvIg~Il-li~y~irR~~Kk~ 95 (122)
T PF01102_consen 75 AGVIGIIL-LISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHH-HHHHHHHHHS---
T ss_pred HHHHHHHH-HHHHHHHHHhccC
Confidence 34444333 4455555555544
No 116
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=36.08 E-value=50 Score=22.44 Aligned_cols=27 Identities=7% Similarity=-0.157 Sum_probs=20.6
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256 195 PTSLENSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 195 ~~t~~~~iG~~lii~g~~~~~~~~~~~ 221 (226)
.+++...+|+.+++.|...|..++.|+
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 467888899999998888887655443
No 117
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=35.88 E-value=4.2e+02 Score=25.78 Aligned_cols=45 Identities=13% Similarity=0.153 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhc
Q 027256 14 AMVTVLKNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGG 58 (226)
Q Consensus 14 ~~~~il~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~ 58 (226)
+=+.++..+.|+=.+.++.+...+|.+.+.+.+.+-.++|.+.+.
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~~ 55 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISIQ 55 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhC
Confidence 345667788999999999888777776666777777777777553
No 118
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=35.32 E-value=35 Score=18.27 Aligned_cols=13 Identities=15% Similarity=-0.100 Sum_probs=7.1
Q ss_pred CCchhHHHHHHHH
Q 027256 196 TSLENSASIFFGL 208 (226)
Q Consensus 196 ~t~~~~iG~~lii 208 (226)
-....++|++++.
T Consensus 10 ~~~~~~~G~~l~~ 22 (34)
T TIGR01167 10 NSLLLLLGLLLLG 22 (34)
T ss_pred cHHHHHHHHHHHH
Confidence 3455667774433
No 119
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.57 E-value=1e+02 Score=21.70 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=22.7
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 027256 186 VAGILLFKVPTSLENSASIFFGLLAGVF 213 (226)
Q Consensus 186 i~~~l~f~e~~t~~~~iG~~lii~g~~~ 213 (226)
-++++.++|++.+..+.|..++..++.+
T Consensus 85 ~Fsvfyl~epl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 85 PFSVFYLKEPLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 4678889999999999999887665543
No 120
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=33.52 E-value=2.3e+02 Score=21.96 Aligned_cols=19 Identities=0% Similarity=-0.171 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027256 67 VGYAWQIINCFLTASYSLT 85 (226)
Q Consensus 67 ~G~~~~l~s~~~~a~~~i~ 85 (226)
.....++.+++.++..++.
T Consensus 132 qsv~~gf~a~lGfslvmvl 150 (193)
T COG4657 132 QSVVYGFGAALGFSLVMVL 150 (193)
T ss_pred HHHHHHhhhHhhHHHHHHH
Confidence 3333444444444444333
No 121
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=33.12 E-value=43 Score=27.91 Aligned_cols=23 Identities=9% Similarity=0.108 Sum_probs=17.7
Q ss_pred CCchhHHHHHHHHHHHHHHHhhh
Q 027256 196 TSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 196 ~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
+|..|+++..+++.|..+..+++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999888876654443
No 122
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=32.76 E-value=58 Score=21.05 Aligned_cols=22 Identities=5% Similarity=0.016 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHhhhhhh
Q 027256 200 NSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 200 ~~iG~~lii~g~~~~~~~~~~~ 221 (226)
-.+++.+++.|.++|...++++
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~ 27 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKK 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4567777788888887665544
No 123
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=29.79 E-value=35 Score=24.14 Aligned_cols=44 Identities=7% Similarity=-0.167 Sum_probs=32.8
Q ss_pred HHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhh
Q 027256 174 SLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 174 si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~ 217 (226)
+-.+-+-.+.+++..+.+=+..++...|+|.++++.|..+....
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 33444555677777777778999999999999999986655443
No 124
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=29.50 E-value=33 Score=28.97 Aligned_cols=44 Identities=14% Similarity=0.085 Sum_probs=37.1
Q ss_pred hhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhhhhh
Q 027256 178 SLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 178 ~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~~~~ 221 (226)
.-.++.+.+.++++.+.+.+..|+...+++-.|.++.+..+.++
T Consensus 99 sgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d 142 (330)
T KOG1583|consen 99 SGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKD 142 (330)
T ss_pred cCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcc
Confidence 34567788999999999999999999999988988887776554
No 125
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=28.67 E-value=66 Score=27.65 Aligned_cols=26 Identities=8% Similarity=0.220 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCcccC
Q 027256 15 MVTVLKNVTNVITAVGEMYLFNKRHD 40 (226)
Q Consensus 15 ~~~il~~~~pv~~~i~~~~~~~~~~~ 40 (226)
.-+..|.+.|+|.++-++++++||.+
T Consensus 46 lns~sr~aVPLFfmISGyL~~~e~s~ 71 (332)
T COG3274 46 LNSASRVAVPLFFMISGYLFFGERSA 71 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccc
Confidence 45778999999999999999999754
No 126
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=28.02 E-value=3.8e+02 Score=24.38 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=18.1
Q ss_pred CCchhHHHHHHHHHHHHHHHhhh
Q 027256 196 TSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 196 ~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
++..||+++.+++.|.+++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 68889999999988876665443
No 127
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=27.78 E-value=88 Score=22.46 Aligned_cols=24 Identities=25% Similarity=0.122 Sum_probs=19.3
Q ss_pred CcccChhHHHHHHHHHHhhhhhcc
Q 027256 36 NKRHDNRVWAALFLMIISAISGGI 59 (226)
Q Consensus 36 ~~~~~~~~~~al~l~~~Gv~l~~~ 59 (226)
..|+++-+-.|+.++++|.++.-.
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 357888889999999999987643
No 128
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.74 E-value=1.1e+02 Score=22.26 Aligned_cols=8 Identities=13% Similarity=0.031 Sum_probs=3.0
Q ss_pred hhhHHHHH
Q 027256 179 LNKIPLSV 186 (226)
Q Consensus 179 l~~v~~~i 186 (226)
+-|++..+
T Consensus 76 ~lPll~li 83 (135)
T PF04246_consen 76 LLPLLALI 83 (135)
T ss_pred HHHHHHHH
Confidence 33333333
No 129
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=27.35 E-value=3e+02 Score=21.51 Aligned_cols=37 Identities=11% Similarity=0.225 Sum_probs=25.2
Q ss_pred HHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 027256 173 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLL 209 (226)
Q Consensus 173 ~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~ 209 (226)
.+++...-.++.++.-+.++|-++|....+|+.+++.
T Consensus 59 ~aii~l~~dv~i~l~~~~~~~~~l~l~~iaall~~iG 95 (189)
T PF02355_consen 59 AAIIALIHDVLITLGIFSLFGIELTLPSIAALLTIIG 95 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-EE-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHHH
Confidence 3444555556666666777899999999999988764
No 130
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=26.89 E-value=37 Score=19.59 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHhhhh
Q 027256 203 SIFFGLLAGVFFARAKM 219 (226)
Q Consensus 203 G~~lii~g~~~~~~~~~ 219 (226)
|.++++.+.+++-++|+
T Consensus 22 ~vI~~vl~~~l~~~~rR 38 (40)
T PF08693_consen 22 GVIIIVLGAFLFFWYRR 38 (40)
T ss_pred HHHHHHHHHHhheEEec
Confidence 34444555555544443
No 131
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=26.48 E-value=4.7e+02 Score=23.40 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhhhh
Q 027256 199 ENSASIFFGLLAGVFFARAKMWER 222 (226)
Q Consensus 199 ~~~iG~~lii~g~~~~~~~~~~~~ 222 (226)
..+.|.++...|..+|.+.+++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~~ 440 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKERG 440 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455688887888877776655543
No 132
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.40 E-value=36 Score=28.71 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=37.0
Q ss_pred HHHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHH
Q 027256 163 WFLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAG 211 (226)
Q Consensus 163 ~~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~ 211 (226)
.|+|..+-.-..+=-.+-.+++++++++++++.-+..-..++.+++.|.
T Consensus 121 lcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF 169 (347)
T KOG1442|consen 121 LCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF 169 (347)
T ss_pred eehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence 4677666655555555777999999999999888888888888877653
No 133
>PRK02935 hypothetical protein; Provisional
Probab=26.06 E-value=76 Score=22.51 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=29.3
Q ss_pred hCcccChhHHHHHHHHHHhhhhhcccc----cc-----cchHHHHHHHHHHHHHHH
Q 027256 35 FNKRHDNRVWAALFLMIISAISGGITD----LS-----FHAVGYAWQIINCFLTAS 81 (226)
Q Consensus 35 ~~~~~~~~~~~al~l~~~Gv~l~~~~~----~~-----~~~~G~~~~l~s~~~~a~ 81 (226)
+..|+++.+-.|+.++++|.++...+- .. +-..|.+..+.|...|--
T Consensus 5 ~ssKINkiRt~aL~lvfiG~~vMy~Giff~~~~~~m~ifm~~G~l~~l~S~vvYFw 60 (110)
T PRK02935 5 YSNKINKIRTFALSLVFIGFIVMYLGIFFRESIIIMTIFMLLGFLAVIASTVVYFW 60 (110)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888999999999998764331 11 223566555555544433
No 134
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=25.19 E-value=1e+02 Score=17.53 Aligned_cols=20 Identities=5% Similarity=0.049 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q 027256 201 SASIFFGLLAGVFFARAKMW 220 (226)
Q Consensus 201 ~iG~~lii~g~~~~~~~~~~ 220 (226)
.+|+++++.....|.-..+|
T Consensus 13 ~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 13 VVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred HHHHHHHHHHHHHHHHHHcc
Confidence 45777777766776544433
No 135
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=24.46 E-value=78 Score=26.37 Aligned_cols=22 Identities=23% Similarity=0.161 Sum_probs=17.6
Q ss_pred CCchhHHHHHHHHHHHHHHHhh
Q 027256 196 TSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 196 ~t~~~~iG~~lii~g~~~~~~~ 217 (226)
+|..|+++..+++.|..+.-+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999988887766444
No 136
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=23.71 E-value=3.7e+02 Score=21.18 Aligned_cols=28 Identities=14% Similarity=0.056 Sum_probs=19.6
Q ss_pred CcccChhHHHHHHHHHHhhhhhcccccc
Q 027256 36 NKRHDNRVWAALFLMIISAISGGITDLS 63 (226)
Q Consensus 36 ~~~~~~~~~~al~l~~~Gv~l~~~~~~~ 63 (226)
+++..+....+++...+|+....++-.+
T Consensus 16 ~~~w~~~l~~Gv~lii~Gl~~l~~P~~s 43 (185)
T COG3247 16 KKPWWWVLLLGVLLIILGLLALFNPAIS 43 (185)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444566678888899999887665443
No 137
>PF10855 DUF2648: Protein of unknown function (DUF2648); InterPro: IPR022561 This family of proteins with unknown function appears to be restricted to eubacteia.
Probab=23.41 E-value=62 Score=17.60 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHhhhhhhh
Q 027256 204 IFFGLLAGVFFARAKMWER 222 (226)
Q Consensus 204 ~~lii~g~~~~~~~~~~~~ 222 (226)
+.+++.|..++...|++.+
T Consensus 6 i~L~l~ga~f~~fKKyQ~~ 24 (33)
T PF10855_consen 6 IILILGGAAFYGFKKYQNH 24 (33)
T ss_pred ehhhhhhHHHHHHHHHHHH
Confidence 4567778888888877653
No 138
>PF15055 DUF4536: Domain of unknown function (DUF4536)
Probab=23.30 E-value=50 Score=19.80 Aligned_cols=21 Identities=10% Similarity=-0.080 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhc
Q 027256 203 SIFFGLLAGVFFARAKMWERS 223 (226)
Q Consensus 203 G~~lii~g~~~~~~~~~~~~~ 223 (226)
|..++-+|+++|..+|++.|+
T Consensus 10 G~GLig~G~Yv~~~ark~~k~ 30 (47)
T PF15055_consen 10 GGGLIGAGAYVYAQARKRMKP 30 (47)
T ss_pred ccchHHHHHHHHHHHhhcccC
Confidence 455555677888777766543
No 139
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=23.08 E-value=2.3e+02 Score=21.45 Aligned_cols=11 Identities=27% Similarity=0.244 Sum_probs=5.5
Q ss_pred HHHHhcCCCCC
Q 027256 187 AGILLFKVPTS 197 (226)
Q Consensus 187 ~~~l~f~e~~t 197 (226)
...++++|...
T Consensus 96 a~~L~~~e~~~ 106 (150)
T COG3086 96 AQYLFFSELIV 106 (150)
T ss_pred HHHHhhhhHHH
Confidence 34455566543
No 140
>TIGR00966 3a0501s07 protein-export membrane protein SecF. This bacterial protein is always found with the homologous protein-export membrane protein SecD. In numerous lineages, this protein occurs as a SecDF fusion protein.
Probab=22.73 E-value=4.2e+02 Score=21.55 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=26.6
Q ss_pred hHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 027256 171 TTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGL 208 (226)
Q Consensus 171 ~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii 208 (226)
.-..++...-.+...+....++|.+++.....|..+++
T Consensus 124 ~l~v~~~ip~~l~~~~~~l~~~g~~ln~~sl~gli~~i 161 (246)
T TIGR00966 124 ALGAIVALVHDVIITVGVYSLFGIEVNLTTVAALLTII 161 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCcccHHHHHHHHHHH
Confidence 33444444455566666666789999999999998865
No 141
>PF11384 DUF3188: Protein of unknown function (DUF3188); InterPro: IPR021524 This bacterial family of proteins has no known function.
Probab=22.34 E-value=78 Score=19.10 Aligned_cols=19 Identities=21% Similarity=-0.075 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHHHHHHh
Q 027256 198 LENSASIFFGLLAGVFFAR 216 (226)
Q Consensus 198 ~~~~iG~~lii~g~~~~~~ 216 (226)
+.-.+|+++++.|.+....
T Consensus 27 P~~~~Gi~Lii~g~v~r~~ 45 (49)
T PF11384_consen 27 PAILIGIGLIISGGVGRRR 45 (49)
T ss_pred HHHHHhHHHHhhhhhhhhh
Confidence 3456688887777665543
No 142
>TIGR00544 lgt prolipoprotein diacylglyceryl transferase. The conversion of lipoprotein precursors into lipoproteins consists of three steps. First, the enzyme described by this model transfers a diacylglyceryl moiety from phosphatidylglycerol to the side chain of a Cys that will become the new N-terminus. Second, the signal peptide is removed by signal peptidase II. Finally, the free amino group of the new N-terminal Cys is acylated by apolipoprotein N-acyltransferase.
Probab=21.77 E-value=91 Score=26.14 Aligned_cols=22 Identities=14% Similarity=-0.008 Sum_probs=17.3
Q ss_pred CCchhHHHHHHHHHHHHHHHhh
Q 027256 196 TSLENSASIFFGLLAGVFFARA 217 (226)
Q Consensus 196 ~t~~~~iG~~lii~g~~~~~~~ 217 (226)
+|..|+++..+++.|..+..+.
T Consensus 246 lt~~Q~~sl~~i~~g~~~~~~~ 267 (278)
T TIGR00544 246 ISMGQILSLLMIAGILIIMLLA 267 (278)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999988887665443
No 143
>PLN02776 prenyltransferase
Probab=20.78 E-value=5.6e+02 Score=22.26 Aligned_cols=37 Identities=14% Similarity=-0.016 Sum_probs=25.6
Q ss_pred HHhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhH
Q 027256 164 FLHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENS 201 (226)
Q Consensus 164 ~~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~ 201 (226)
-.|+.++..+ +++..---...+.|+.--.+++++..|
T Consensus 118 ~lKR~t~~~~-~lG~~~Ga~ppL~Gw~Avtg~~~~~~~ 154 (341)
T PLN02776 118 PLKQIHPANT-WVGAVVGAIPPLMGWAAASGQLDAGAM 154 (341)
T ss_pred hHccCCchhH-HHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3788887764 777776666667788877777665443
Done!