Query 027256
Match_columns 226
No_of_seqs 102 out of 1056
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 11:38:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027256.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027256hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.6 1.3E-07 4.4E-12 69.8 6.9 68 151-218 36-105 (137)
2 3b5d_A Multidrug transporter E 98.4 2.1E-06 7.2E-11 60.9 8.7 68 151-218 36-105 (110)
3 3b5d_A Multidrug transporter E 98.3 4.6E-07 1.6E-11 64.3 4.2 59 2-60 45-104 (110)
4 2i68_A Protein EMRE; transmemb 98.2 6.5E-07 2.2E-11 65.9 2.3 59 2-60 45-104 (137)
5 2ks1_B Epidermal growth factor 45.6 19 0.00065 20.4 2.7 15 210-224 29-43 (44)
6 2l2t_A Receptor tyrosine-prote 40.4 24 0.00081 20.0 2.6 14 211-224 29-42 (44)
7 3l1l_A Arginine/agmatine antip 26.9 1.2E+02 0.004 25.3 6.0 22 200-221 410-431 (445)
8 3kcu_A Probable formate transp 16.3 4.1E+02 0.014 21.2 6.8 25 102-126 111-135 (285)
9 3aqp_A Probable secdf protein- 13.3 7.4E+02 0.025 22.6 9.0 36 173-208 596-631 (741)
10 3qrx_B Melittin; calcium-bindi 12.3 1.4E+02 0.0049 14.4 1.8 22 202-223 2-26 (26)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.57 E-value=1.3e-07 Score=69.77 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 151 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
+++++.+.+..+ .++|+.++..+..+ ..+.|++++++|+++|||++|+.+++|+++++.|++..+..+
T Consensus 36 ~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 444555555544 57999999988887 899999999999999999999999999999999998887644
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.36 E-value=2.1e-06 Score=60.87 Aligned_cols=68 Identities=9% Similarity=0.009 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHH-HHHhhcchhHHHHH-hhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHhhh
Q 027256 151 GFLGLAISFTSM-WFLHQTGATTYSLV-GSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGVFFARAK 218 (226)
Q Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~si~-~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~~~~~~~ 218 (226)
+..+....+..+ .++|+.+...+..+ ..+.++.++++|+++|||++|..+++|+++++.|++..+..+
T Consensus 36 ~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 36 TIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 334444444444 57899999888777 899999999999999999999999999999999988876544
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.31 E-value=4.6e-07 Score=64.34 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=54.0
Q ss_pred ccccccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256 2 FKFICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 60 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~ 60 (226)
++...+++++|++.+..+ +...|+++++++.+++||++++.+++++.+++.|+++....
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 345678999999999998 89999999999999999999999999999999999987654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.16 E-value=6.5e-07 Score=65.95 Aligned_cols=59 Identities=15% Similarity=0.228 Sum_probs=43.3
Q ss_pred ccccccccccchhHHHHH-HHHHHHHHHHHHHHHhCcccChhHHHHHHHHHHhhhhhccc
Q 027256 2 FKFICSLKYINVAMVTVL-KNVTNVITAVGEMYLFNKRHDNRVWAALFLMIISAISGGIT 60 (226)
Q Consensus 2 ~~~~~al~~i~~~~~~il-~~~~pv~~~i~~~~~~~~~~~~~~~~al~l~~~Gv~l~~~~ 60 (226)
++.+.+++++|++.+..+ .++.|++++++++++++|++++.+++++.++++|+++....
T Consensus 45 ~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 456788999999999888 99999999999999999999999999999999999988543
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=45.61 E-value=19 Score=20.41 Aligned_cols=15 Identities=7% Similarity=-0.053 Sum_probs=6.8
Q ss_pred HHHHHHhhhhhhhcc
Q 027256 210 AGVFFARAKMWERSQ 224 (226)
Q Consensus 210 g~~~~~~~~~~~~~~ 224 (226)
+..++-++++|+++|
T Consensus 29 ~~~~~~~RRr~~~~k 43 (44)
T 2ks1_B 29 LGIGLFMRRRHIVRK 43 (44)
T ss_dssp HHHHHHHHTTTCCSC
T ss_pred HHHHHHhhhhHhhcc
Confidence 344444444444444
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=40.45 E-value=24 Score=20.00 Aligned_cols=14 Identities=0% Similarity=-0.197 Sum_probs=5.7
Q ss_pred HHHHHhhhhhhhcc
Q 027256 211 GVFFARAKMWERSQ 224 (226)
Q Consensus 211 ~~~~~~~~~~~~~~ 224 (226)
..++-++++|+++|
T Consensus 29 ~~~~~~RRRr~~~k 42 (44)
T 2l2t_A 29 TFAVYVRRKSIKKK 42 (44)
T ss_dssp HHHHHHHTTCSSCC
T ss_pred HHHHHhhhhhhhhc
Confidence 33343444444333
No 7
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=26.93 E-value=1.2e+02 Score=25.30 Aligned_cols=22 Identities=9% Similarity=-0.145 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHhhhhhh
Q 027256 200 NSASIFFGLLAGVFFARAKMWE 221 (226)
Q Consensus 200 ~~iG~~lii~g~~~~~~~~~~~ 221 (226)
...|....+.|..+|-..++|+
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4457777777887776655443
No 8
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=16.29 E-value=4.1e+02 Score=21.18 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=16.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHh
Q 027256 102 LNEFSMVLLNNSLSLPLGVLLVIVF 126 (226)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (226)
...|...+..|+.+..+...+....
T Consensus 111 lr~W~~v~~gNliGal~~a~l~~~s 135 (285)
T 3kcu_A 111 AKNWLNVYFGNLVGALLFVLLMWLS 135 (285)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3457788888888887766554333
No 9
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=13.31 E-value=7.4e+02 Score=22.57 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=25.2
Q ss_pred HHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 027256 173 YSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGL 208 (226)
Q Consensus 173 ~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii 208 (226)
..++...-.+...+..+.++|.+++....+|+.+++
T Consensus 596 ~~l~~l~~~~~~~~g~l~l~g~~l~~~~i~~~l~li 631 (741)
T 3aqp_A 596 ASILAVAHDVAIVAGMYSLLGLEFSIPTIAALLTIV 631 (741)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 334455555666666667789999999988877644
No 10
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=12.30 E-value=1.4e+02 Score=14.36 Aligned_cols=22 Identities=9% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHHHHHH---HHHhhhhhhhc
Q 027256 202 ASIFFGLLAGV---FFARAKMWERS 223 (226)
Q Consensus 202 iG~~lii~g~~---~~~~~~~~~~~ 223 (226)
+|.++=..... +.+|.|+|.++
T Consensus 2 iGa~LKVLa~~LP~liSWiK~kr~~ 26 (26)
T 3qrx_B 2 IGAVLKVLTTGLPALISWIKRKRQQ 26 (26)
T ss_pred chHHHHHHHccchHHHHHHHHHhcC
Done!