Query 027256
Match_columns 226
No_of_seqs 102 out of 1056
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 11:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027256.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027256hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 21.0 40 0.0029 15.2 2.8 17 67-83 3-19 (27)
2 d1iwga7 f.35.1.1 (A:7-37,A:331 16.1 1.6E+02 0.012 20.0 7.2 48 165-212 60-107 (199)
3 d2h5na1 a.287.1.2 (A:1-132) Hy 14.3 81 0.0059 19.3 3.3 28 50-78 89-116 (132)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 9.6 1.2E+02 0.0085 18.3 3.0 18 205-222 40-57 (100)
5 d1fftb2 f.17.2.1 (B:27-117) Cy 7.3 47 0.0034 20.0 0.2 13 209-221 33-45 (91)
6 d1iwga8 f.35.1.1 (A:513-566,A: 7.1 3.6E+02 0.026 18.4 9.0 28 182-209 95-122 (222)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 6.0 2E+02 0.014 17.5 2.8 13 208-220 49-61 (107)
8 d2axtt1 f.23.34.1 (T:1-30) Pho 5.7 1.7E+02 0.012 13.2 2.0 6 191-196 22-27 (30)
9 d2iuba2 f.17.3.1 (A:286-349) M 5.4 1.5E+02 0.011 16.1 1.8 10 198-207 42-51 (64)
10 d1pv7a_ f.38.1.2 (A:) Lactose 4.8 5.2E+02 0.038 17.8 10.5 18 37-54 284-301 (417)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.95 E-value=40 Score=15.17 Aligned_cols=17 Identities=18% Similarity=0.512 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027256 67 VGYAWQIINCFLTASYS 83 (226)
Q Consensus 67 ~G~~~~l~s~~~~a~~~ 83 (226)
.|...+-++.++||.|.
T Consensus 3 lgli~~tl~glf~aayq 19 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHH
Confidence 57777888888888873
No 2
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=16.05 E-value=1.6e+02 Score=20.03 Aligned_cols=48 Identities=13% Similarity=-0.002 Sum_probs=31.1
Q ss_pred HhhcchhHHHHHhhhhhHHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Q 027256 165 LHQTGATTYSLVGSLNKIPLSVAGILLFKVPTSLENSASIFFGLLAGV 212 (226)
Q Consensus 165 ~~~~~~~~~si~~~l~~v~~~i~~~l~f~e~~t~~~~iG~~lii~g~~ 212 (226)
.|...+.....+...-.+........++|.+++.....+..+.+..+.
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 344444444455555556666666778899999888888777665433
No 3
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=14.28 E-value=81 Score=19.26 Aligned_cols=28 Identities=14% Similarity=0.297 Sum_probs=21.0
Q ss_pred HHHhhhhhcccccccchHHHHHHHHHHHH
Q 027256 50 MIISAISGGITDLSFHAVGYAWQIINCFL 78 (226)
Q Consensus 50 ~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 78 (226)
...|+++++.+|.+.|-. .+|.+++.+|
T Consensus 89 sylgvimasdgdiddnel-alwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDNEL-ALWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHHHH-HHHHHHHHHH
T ss_pred HHhhheeccCCCCCccHh-HHHHHHHHHh
Confidence 567899998888887744 3688877765
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=9.56 E-value=1.2e+02 Score=18.33 Aligned_cols=18 Identities=11% Similarity=0.100 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHhhhhhhh
Q 027256 205 FFGLLAGVFFARAKMWER 222 (226)
Q Consensus 205 ~lii~g~~~~~~~~~~~~ 222 (226)
.+.+.+...|...|+|+|
T Consensus 40 ~~~V~~~l~~~~~~~r~~ 57 (100)
T d3dtub2 40 TIFVTLLILYAVWRFHEK 57 (100)
T ss_dssp HHHHHHHHHHHHHHHBTT
T ss_pred HHHHHHHHHHHhhhhhcc
Confidence 333445555555554433
No 5
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=7.28 E-value=47 Score=20.04 Aligned_cols=13 Identities=8% Similarity=-0.304 Sum_probs=6.6
Q ss_pred HHHHHHHhhhhhh
Q 027256 209 LAGVFFARAKMWE 221 (226)
Q Consensus 209 ~g~~~~~~~~~~~ 221 (226)
.|.+.|...|+|+
T Consensus 33 ~~~~~~~~~ryR~ 45 (91)
T d1fftb2 33 ILMAVGFAWKYRA 45 (91)
T ss_dssp HHHHHTTTTTTTT
T ss_pred HHHHHhhheeeec
Confidence 4455555555443
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.12 E-value=3.6e+02 Score=18.41 Aligned_cols=28 Identities=0% Similarity=-0.076 Sum_probs=21.7
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 027256 182 IPLSVAGILLFKVPTSLENSASIFFGLL 209 (226)
Q Consensus 182 v~~~i~~~l~f~e~~t~~~~iG~~lii~ 209 (226)
+...+.+..+.|.+++....+|.++.+.
T Consensus 95 ~~~~~~~l~~~g~~~~~~~~~g~i~l~G 122 (222)
T d1iwga8 95 VIGALLAATFRGLTNDVYFQVGLLTTIG 122 (222)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchhhhhcccccchhh
Confidence 4455666777899999999999888654
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.99 E-value=2e+02 Score=17.49 Aligned_cols=13 Identities=0% Similarity=-0.038 Sum_probs=6.3
Q ss_pred HHHHHHHHhhhhh
Q 027256 208 LLAGVFFARAKMW 220 (226)
Q Consensus 208 i~g~~~~~~~~~~ 220 (226)
+.+...|...|+|
T Consensus 49 V~~~~~~~~~~~r 61 (107)
T d3ehbb2 49 VCLLLLICIVRFN 61 (107)
T ss_dssp HHHHHHHHHHHSB
T ss_pred HHHHHHHHhhhhh
Confidence 3455555554444
No 8
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.71 E-value=1.7e+02 Score=13.21 Aligned_cols=6 Identities=33% Similarity=0.971 Sum_probs=2.8
Q ss_pred hcCCCC
Q 027256 191 LFKVPT 196 (226)
Q Consensus 191 ~f~e~~ 196 (226)
+|.|++
T Consensus 22 ffrepp 27 (30)
T d2axtt1 22 FFREPP 27 (30)
T ss_dssp HTSCCC
T ss_pred HhcCCC
Confidence 445543
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.37 E-value=1.5e+02 Score=16.05 Aligned_cols=10 Identities=0% Similarity=-0.250 Sum_probs=4.0
Q ss_pred chhHHHHHHH
Q 027256 198 LENSASIFFG 207 (226)
Q Consensus 198 ~~~~iG~~li 207 (226)
..-..|..++
T Consensus 42 ~~~~~~~~~~ 51 (64)
T d2iuba2 42 YPVVLAVMGV 51 (64)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 10
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=4.76 E-value=5.2e+02 Score=17.77 Aligned_cols=18 Identities=22% Similarity=0.073 Sum_probs=8.2
Q ss_pred cccChhHHHHHHHHHHhh
Q 027256 37 KRHDNRVWAALFLMIISA 54 (226)
Q Consensus 37 ~~~~~~~~~al~l~~~Gv 54 (226)
+|..+++...+.....++
T Consensus 284 ~r~~~~~~~~~~~~~~~~ 301 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSV 301 (417)
T ss_dssp HHHCHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHH
Confidence 455555544444444333
Done!