Citrus Sinensis ID: 027257

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MTESSGNASVSSSSSLSSNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEcccccccEEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHccccccccHHHHHHHHHHcccEEEEEEccccEEEEEcccccccccEEEEEEEccccEccEccccccccccccccEEcc
Coil and Loop (DISEMBL)
mtessgnasvssssslssnfpdaeddhTIASILASEENAKAEGQlgkrlshldsiphtpringeipdvndasfdheRLSERLttyglaelqiegdgncQFRALADqlfrnpdyhkHVRKEIFKQLKHFRKLYegyvpmnykGYLRKmkksgewgdhVTLQAAADRFQAKICLVtsfrdtcyveiipkdknptrELWLSFWSEVHYnslyatgdvptrkprkkywlf
Flexible Loop (DISEMBL)
mtessgnasvssssslssnfpdAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPhtpringeipdvndASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVeiipkdknptRELWLSFWSEVHYNslyatgdvptrkprkkywlf
Low Complexity Region (SEG)
MTEssgnasvssssslssNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF
Disordered region (IsUnstruct)
*****************************************************************************LSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDV************
Disordered Region (DISOPRED)
****************************************************************************RLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEI****KNPTRELWLSFWSEVHYNSL*A************YWLF
Disordered Region (DISEMBL)
*********************DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF
Disordered Region (DISPRO)
************************DDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKK*W*F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTESSGNASVSSSSSLSSNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.756	0.223	0.336	4e-19
Q96G74	571	OTU domain-containing pro	yes	no	0.522	0.206	0.286	3e-09
Q7ZX21	513	OTU domain-containing pro	N/A	no	0.517	0.228	0.279	3e-08
Q08BW0	560	OTU domain-containing pro	no	no	0.530	0.214	0.272	5e-08
Q2YDU3	566	OTU domain-containing pro	no	no	0.508	0.203	0.275	7e-08
Q640H3	518	OTU domain-containing pro	N/A	no	0.508	0.222	0.275	8e-08
Q3U2S4	566	OTU domain-containing pro	yes	no	0.508	0.203	0.275	8e-08
Q6GL44	518	OTU domain-containing pro	no	no	0.508	0.222	0.275	8e-08
Q7RTX8	443	Putative HIN1-like protei	no	no	0.553	0.282	0.242	2e-06
Q01804	1113	OTU domain-containing pro	no	no	0.553	0.112	0.234	4e-06

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 95/184 (51%), Gaps = 13/184 (7%)

Query: 38  NAKAEGQLGKRLSHLDSIPHTPRING--EIPDVNDASFDHERLSERLTTYGLAEL-QIEG 94
           N   EG + K ++H  S+  +  +     +P   +     +RL+ERL  Y L    +I G
Sbjct: 579 NLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELYMLKNSKEIPG 638

Query: 95  DGNCQFRALADQLFRNPDYHKHVRKEIFK--------QLKHFRKLYEGYVPMNYKGYLRK 146
           DGNCQ  AL+DQL+ +  + + VRK I          QL +   + +     N+  Y   
Sbjct: 639 DGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDDYCND 698

Query: 147 MKKSGEWGDHVTLQAAADRFQAKICLVTSF--RDTCYVEIIPKDKNPTRELWLSFWSEVH 204
           M K+G WGDH+TL AAA+ F +KI +++S   +   ++EIIP      + L LS ++E H
Sbjct: 699 MSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHYAEFH 758

Query: 205 YNSL 208
           Y SL
Sbjct: 759 YGSL 762

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 62.4 bits (150), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 62/122 (50%), Gaps = 4/122 (3%)

Query: 91  QIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
           Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ + +K+
Sbjct: 217 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 276

Query: 151 GEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPK----DKNPTRELWLSFWSEVHYN 206
              G+H+ +QA A+ +   + +      T  VE I       +N    + +S+   +HYN
Sbjct: 277 NCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYN 336

Query: 207 SL 208
           S+
Sbjct: 337 SV 338

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7ZX21|OTU5A_XENLA OTU domain-containing protein 5-A OS=Xenopus laevis GN=otud5-a PE=2 SV=1

 Score = 58.9 bits (141), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/118 (27%), Positives = 59/118 (50%), Gaps = 1/118 (0%)

Query: 91  QIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
           Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ + +K+
Sbjct: 170 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 229

Query: 151 GEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G+H+ +QA A+ +   +  V  +            KN    + +S+   +HYNS+
Sbjct: 230 NCHGNHIEMQAMAEMYNRPV-EVYQYGTEPINTFHGIQKNEDEPIRVSYHRNIHYNSV 286

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 5/125 (4%)

Query: 86  GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
           G    +++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ 
Sbjct: 210 GFVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 269

Query: 146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD--TCYVEIIPKDKNPTRELWLSFWSEV 203
           + +K+   G+H+ +QA A+ +   + +  S  +    +  I   +  P R   +S+   +
Sbjct: 270 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGIHQNNDEPIR---VSYHRNI 326

Query: 204 HYNSL 208
           HYNS+
Sbjct: 327 HYNSV 331

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q2YDU3|OTUD5_RAT OTU domain-containing protein 5 OS=Rattus norvegicus GN=Otud5 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 91  QIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
           Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ + +K+
Sbjct: 217 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 276

Query: 151 GEWGDHVTLQAAADRFQ--AKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G+H+ +QA A+ +    ++   ++     +  I   +  P R   +S+   +HYNS+
Sbjct: 277 NCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIR---VSYHRNIHYNSV 333

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q640H3|OTU5B_XENLA OTU domain-containing protein 5-B OS=Xenopus laevis GN=otud5-b PE=2 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 91  QIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
           Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ + +K+
Sbjct: 175 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 234

Query: 151 GEWGDHVTLQAAADRFQAKICLVTSFRD--TCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G+H+ +QA A+ +   + +     +    +  I   +  P R   +S+   +HYNS+
Sbjct: 235 NCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIR---VSYHRNIHYNSV 291

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q3U2S4|OTUD5_MOUSE OTU domain-containing protein 5 OS=Mus musculus GN=Otud5 PE=1 SV=2

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 5/120 (4%)

Query: 91  QIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
           Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ + +K+
Sbjct: 217 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 276

Query: 151 GEWGDHVTLQAAADRFQ--AKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G+H+ +QA A+ +    ++   ++     +  I   +  P R   +S+   +HYNS+
Sbjct: 277 NCHGNHIEMQAMAEMYNRPVEVYQYSTEPINTFHGIHQNEDEPIR---VSYHRNIHYNSV 333

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q6GL44|OTUD5_XENTR OTU domain-containing protein 5 OS=Xenopus tropicalis GN=otud5 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 5/120 (4%)

Query: 91  QIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
           Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ + +K+
Sbjct: 175 QMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKN 234

Query: 151 GEWGDHVTLQAAADRFQAKICLVTSFRD--TCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G+H+ +QA A+ +   + +     +    +  I   +  P R   +S+   +HYNS+
Sbjct: 235 NCHGNHIEMQAMAEMYNRPVEVYQYGTEPINTFHGIQQNEDEPIR---VSYHRNIHYNSV 291

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q7RTX8|HIN1L_HUMAN Putative HIN1-like protein OS=Homo sapiens GN=HIN1L PE=5 SV=1

 Score = 52.8 bits (125), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/128 (24%), Positives = 62/128 (48%), Gaps = 3/128 (2%)

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L   GL    +  DG+C FRA+A+Q+  +   H  VR      L+  R+ +E  +  +++
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHCLRENREKFEAIIGGSFE 88

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
           GYL++++   EW   + + A +  ++     +T+         + ++  P + L L F +
Sbjct: 89  GYLKRLENPQEWVGQMEISALSLMYRKD--FITNLEPNVSPSQVTENNFPEKVL-LCFSN 145

Query: 202 EVHYNSLY 209
             HY+ +Y
Sbjct: 146 GNHYDIVY 153

Homo sapiens (taxid: 9606)

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/128 (23%), Positives = 61/128 (47%), Gaps = 3/128 (2%)

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L   GL    +  DG+C FRA+A+Q+  +   H  VR      L+  R+ +E ++  +++
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRENREKFEAFIEGSFE 88

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
            YL++++   EW   V + A +  ++    +   +R+         + N   ++ L F +
Sbjct: 89  EYLKRLENPQEWVGQVEISALSLMYRKDFII---YREPNVSPSQVTENNFPEKVLLCFSN 145

Query: 202 EVHYNSLY 209
             HY+ +Y
Sbjct: 146 GNHYDIVY 153

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
224086608	226	predicted protein [Populus trichocarpa]	1.0	1.0	0.836	1e-104
449463619	228	PREDICTED: OTU domain-containing protein	0.995	0.986	0.808	1e-101
224137424	230	predicted protein [Populus trichocarpa]	1.0	0.982	0.786	1e-100
225443120	232	PREDICTED: OTU domain-containing protein	0.907	0.883	0.809	1e-99
388493434	226	unknown [Lotus japonicus]	1.0	1.0	0.787	2e-99
359482432	244	PREDICTED: OTU domain-containing protein	0.907	0.840	0.764	5e-97
18403314	240	OTU-like cysteine protease family protei	0.907	0.854	0.785	2e-94
297830936	240	hypothetical protein ARALYDRAFT_479738 [	0.907	0.854	0.785	3e-94
21537229	240	unknown [Arabidopsis thaliana]	0.907	0.854	0.780	6e-94
42572513	245	OTU-like cysteine protease family protei	0.907	0.836	0.766	1e-92

>gi|224086608|ref|XP_002307916.1| predicted protein [Populus trichocarpa] gi|222853892|gb|EEE91439.1| predicted protein [Populus trichocarpa]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 189/226 (83%), Positives = 208/226 (92%)

Query: 1   MTESSGNASVSSSSSLSSNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPR 60
           MTES+ NASVSSSSSL+S+FPD EDD TIASILA +E+++  G LGKRLSHLDSIPHTPR
Sbjct: 1   MTESNSNASVSSSSSLNSSFPDIEDDQTIASILAEDESSQVAGTLGKRLSHLDSIPHTPR 60

Query: 61  INGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKE 120
           +NGEIPDVNDA+ DHERLSERL TYGL ELQIEGDGNCQFRALADQLFR+PDYHKHVRK+
Sbjct: 61  VNGEIPDVNDATLDHERLSERLATYGLEELQIEGDGNCQFRALADQLFRSPDYHKHVRKK 120

Query: 121 IFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC 180
           I KQLKHFRK YEGYVPM Y+ Y++KMKK GEWGDH+TLQAAADRF AKICLVTSFRDTC
Sbjct: 121 IVKQLKHFRKSYEGYVPMKYRSYVKKMKKPGEWGDHLTLQAAADRFGAKICLVTSFRDTC 180

Query: 181 YVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF 226
           Y+EI+PKDK+PTRELWLSFWSEVHYNSLYATGDVPTR  RKK+WLF
Sbjct: 181 YIEIMPKDKSPTRELWLSFWSEVHYNSLYATGDVPTRVARKKHWLF 226

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463619|ref|XP_004149529.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Cucumis sativus] gi|449505819|ref|XP_004162577.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Cucumis sativus]

 Score =  373 bits (958), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 182/225 (80%), Positives = 202/225 (89%)

Query: 1   MTESSGNASVSSSSSLSSNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPR 60
           MT++  N SVSSSSSL+S+F D EDDHTIA ILA EEN K + +LGKRLSHLDSIPHTPR
Sbjct: 1   MTDNYSNVSVSSSSSLNSSFQDTEDDHTIARILAEEENLKFDNKLGKRLSHLDSIPHTPR 60

Query: 61  INGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKE 120
           +NGEIP+VNDA+ DHERLS RL TYGLAELQ+EGDGNCQFRALADQLFRNPDYHKHVRK 
Sbjct: 61  VNGEIPNVNDATLDHERLSGRLVTYGLAELQMEGDGNCQFRALADQLFRNPDYHKHVRKA 120

Query: 121 IFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC 180
           + KQLK FRKLYEGYVPM YK YL+KMKKSGEWGDHVTLQAAADRF AKICLVTSFRDTC
Sbjct: 121 VIKQLKKFRKLYEGYVPMKYKTYLKKMKKSGEWGDHVTLQAAADRFGAKICLVTSFRDTC 180

Query: 181 YVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWL 225
           Y+EI+PKD +P +ELWLSFW EVHYNSLYA+GD+PTR PR+K+WL
Sbjct: 181 YIEILPKDNSPHKELWLSFWCEVHYNSLYASGDLPTRTPRRKHWL 225

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137424|ref|XP_002322554.1| predicted protein [Populus trichocarpa] gi|222867184|gb|EEF04315.1| predicted protein [Populus trichocarpa]

 Score =  370 bits (949), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 181/230 (78%), Positives = 202/230 (87%), Gaps = 4/230 (1%)

Query: 1   MTESSGNASVSSSSSLSSNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPR 60
           MTES  NASVSS+SSL+S+FPD EDD TIASILA E N++  G+LGKRLSHLDSIPHTPR
Sbjct: 1   MTESYSNASVSSTSSLNSSFPDTEDDQTIASILAEEGNSQVAGRLGKRLSHLDSIPHTPR 60

Query: 61  INGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKE 120
           +NGEIPDVNDA+ DHERLSERL TYGL EL++EGDGNCQFRALADQLFR+PDYHKH RK+
Sbjct: 61  VNGEIPDVNDATLDHERLSERLATYGLEELKMEGDGNCQFRALADQLFRSPDYHKHARKQ 120

Query: 121 IFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC 180
           I KQLKH RKLYEGYVPM Y+ Y++ MKKSGEWGDHVTLQAAADRF AKIC++TSFRDTC
Sbjct: 121 IIKQLKHHRKLYEGYVPMKYRSYVKNMKKSGEWGDHVTLQAAADRFGAKICVLTSFRDTC 180

Query: 181 YVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKP----RKKYWLF 226
           Y+EI PKD++PTRE+WLSFWSEVHYNSLY  GDVPT  P    RKKYW F
Sbjct: 181 YIEIFPKDRSPTREIWLSFWSEVHYNSLYENGDVPTSVPTRVARKKYWFF 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443120|ref|XP_002274979.1| PREDICTED: OTU domain-containing protein DDB_G0284757 isoform 1 [Vitis vinifera] gi|297743628|emb|CBI36495.3| unnamed protein product [Vitis vinifera]

 Score =  368 bits (944), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 166/205 (80%), Positives = 186/205 (90%)

Query: 22  DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
           D EDD TIA ILA EE+ K   +LGKRLSHL+SIPHTPR+NGEIPDVNDA+ DHERL+ER
Sbjct: 28  DTEDDQTIARILAEEESLKNGNKLGKRLSHLNSIPHTPRVNGEIPDVNDATLDHERLAER 87

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L TY LAELQIEGDGNCQFRALADQLFRNPDYHKHVRK++ KQLKHFRKLYE YVPM Y+
Sbjct: 88  LATYDLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKKVVKQLKHFRKLYESYVPMKYR 147

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
            YL++MKKSGEWGDH+TLQAAADRF AKICL+TSFRDTC++EI P+D NPTRELWLSFWS
Sbjct: 148 SYLKQMKKSGEWGDHLTLQAAADRFGAKICLITSFRDTCFIEINPRDGNPTRELWLSFWS 207

Query: 202 EVHYNSLYATGDVPTRKPRKKYWLF 226
           EVHYNSLYA+GDVP+R PRK++WLF
Sbjct: 208 EVHYNSLYASGDVPSRAPRKRHWLF 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493434|gb|AFK34783.1| unknown [Lotus japonicus]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 178/226 (78%), Positives = 200/226 (88%)

Query: 1   MTESSGNASVSSSSSLSSNFPDAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPR 60
           M+ES  NAS SSSSSL+S+F D EDD TIASILA EE+ K E +LGKRLSHL+SIPHTPR
Sbjct: 1   MSESLRNASGSSSSSLNSSFQDTEDDQTIASILAEEESLKEENRLGKRLSHLNSIPHTPR 60

Query: 61  INGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKE 120
           +NGEIPDVNDA+ DH  LSERL TYGL ELQ+EGDGNCQFRALADQLF NP+YHKHVR++
Sbjct: 61  VNGEIPDVNDATQDHGMLSERLVTYGLTELQMEGDGNCQFRALADQLFGNPEYHKHVRRQ 120

Query: 121 IFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC 180
           + KQLKH +KLYE YVPM YK YL+KMKKSGEWGDHVTLQAAADRF+AKICLVTSFRDT 
Sbjct: 121 VIKQLKHHKKLYESYVPMEYKSYLKKMKKSGEWGDHVTLQAAADRFEAKICLVTSFRDTY 180

Query: 181 YVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF 226
           Y+EI+P +K  TRELWLSFWSEVHYNSLY+TGDVP+R P+KKYWLF
Sbjct: 181 YIEILPTNKRLTRELWLSFWSEVHYNSLYSTGDVPSRAPKKKYWLF 226

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482432|ref|XP_003632773.1| PREDICTED: OTU domain-containing protein DDB_G0284757 isoform 2 [Vitis vinifera]

 Score =  359 bits (921), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 166/217 (76%), Positives = 186/217 (85%), Gaps = 12/217 (5%)

Query: 22  DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
           D EDD TIA ILA EE+ K   +LGKRLSHL+SIPHTPR+NGEIPDVNDA+ DHERL+ER
Sbjct: 28  DTEDDQTIARILAEEESLKNGNKLGKRLSHLNSIPHTPRVNGEIPDVNDATLDHERLAER 87

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQ------------LKHFR 129
           L TY LAELQIEGDGNCQFRALADQLFRNPDYHKHVRK++ KQ            LKHFR
Sbjct: 88  LATYDLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKKVVKQIDGDSPAYTSVYLKHFR 147

Query: 130 KLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDK 189
           KLYE YVPM Y+ YL++MKKSGEWGDH+TLQAAADRF AKICL+TSFRDTC++EI P+D 
Sbjct: 148 KLYESYVPMKYRSYLKQMKKSGEWGDHLTLQAAADRFGAKICLITSFRDTCFIEINPRDG 207

Query: 190 NPTRELWLSFWSEVHYNSLYATGDVPTRKPRKKYWLF 226
           NPTRELWLSFWSEVHYNSLYA+GDVP+R PRK++WLF
Sbjct: 208 NPTRELWLSFWSEVHYNSLYASGDVPSRAPRKRHWLF 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403314|ref|NP_566704.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332643092|gb|AEE76613.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|407080571|gb|AFS88960.1| OTU-containing deubiquitinating enzyme OTU11 isoform ii [Arabidopsis thaliana]

 Score =  350 bits (899), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 161/205 (78%), Positives = 178/205 (86%)

Query: 22  DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
           D +DD TIA ILA +E+ + EG+LGKRLSHLDSIPHTPR+N EIPD+NDA+ DHE LS R
Sbjct: 36  DTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSGR 95

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L TYGLAELQ+EGDGNCQFRALADQLFRN DYHKHVRK + KQLK  RKLYE YVPM Y+
Sbjct: 96  LATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYR 155

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
            Y RKMKK GEWGDHVTLQAAADRF+AKICLVTSFRD  Y+EI+P +KNP RE WLSFWS
Sbjct: 156 HYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWS 215

Query: 202 EVHYNSLYATGDVPTRKPRKKYWLF 226
           EVHYNSLYA GDVPTRKPR+K+WLF
Sbjct: 216 EVHYNSLYANGDVPTRKPRRKHWLF 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830936|ref|XP_002883350.1| hypothetical protein ARALYDRAFT_479738 [Arabidopsis lyrata subsp. lyrata] gi|297329190|gb|EFH59609.1| hypothetical protein ARALYDRAFT_479738 [Arabidopsis lyrata subsp. lyrata]

 Score =  350 bits (897), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 161/205 (78%), Positives = 178/205 (86%)

Query: 22  DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
           D +DD TIA ILA +E+ + EG+LGKRLSHLDSIPHTPR+N EIPD+NDA+ DHE LS R
Sbjct: 36  DTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSGR 95

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L TYGLAELQ+EGDGNCQFRALADQLFRN DYHKHVRK + KQLK  RKLYE YVPM Y+
Sbjct: 96  LATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYR 155

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
            Y RKMKK GEWGDHVTLQAAADRF+AKICLVTSFRD  Y+EI+P +KNP RE WLSFWS
Sbjct: 156 HYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWS 215

Query: 202 EVHYNSLYATGDVPTRKPRKKYWLF 226
           EVHYNSLYA GDVPTRKPR+K+WLF
Sbjct: 216 EVHYNSLYANGDVPTRKPRRKHWLF 240

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537229|gb|AAM61570.1| unknown [Arabidopsis thaliana]

 Score =  349 bits (895), Expect = 6e-94,   Method: Compositional matrix adjust.
 Identities = 160/205 (78%), Positives = 178/205 (86%)

Query: 22  DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
           D +DD TIA ILA +E+ + EG+LGKRLSHLDSIPHTPR+N EIPD+N+A+ DHE LS R
Sbjct: 36  DTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINNATLDHELLSGR 95

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L TYGLAELQ+EGDGNCQFRALADQLFRN DYHKHVRK + KQLK  RKLYE YVPM Y+
Sbjct: 96  LATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYR 155

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
            Y RKMKK GEWGDHVTLQAAADRF+AKICLVTSFRD  Y+EI+P +KNP RE WLSFWS
Sbjct: 156 HYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWS 215

Query: 202 EVHYNSLYATGDVPTRKPRKKYWLF 226
           EVHYNSLYA GDVPTRKPR+K+WLF
Sbjct: 216 EVHYNSLYANGDVPTRKPRRKHWLF 240

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42572513|ref|NP_974352.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|334185541|ref|NP_001189948.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|111074170|gb|ABH04458.1| At3g22260 [Arabidopsis thaliana] gi|332643093|gb|AEE76614.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|332643094|gb|AEE76615.1| OTU-like cysteine protease family protein [Arabidopsis thaliana] gi|407078857|gb|AFS88959.1| OTU-containing deubiquitinating enzyme OTU11 isoform i [Arabidopsis thaliana]

 Score =  344 bits (883), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 161/210 (76%), Positives = 178/210 (84%), Gaps = 5/210 (2%)

Query: 22  DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
           D +DD TIA ILA +E+ + EG+LGKRLSHLDSIPHTPR+N EIPD+NDA+ DHE LS R
Sbjct: 36  DTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSGR 95

Query: 82  LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
           L TYGLAELQ+EGDGNCQFRALADQLFRN DYHKHVRK + KQLK  RKLYE YVPM Y+
Sbjct: 96  LATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYR 155

Query: 142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
            Y RKMKK GEWGDHVTLQAAADRF+AKICLVTSFRD  Y+EI+P +KNP RE WLSFWS
Sbjct: 156 HYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWS 215

Query: 202 EVHYNSLYATG-----DVPTRKPRKKYWLF 226
           EVHYNSLYA G     DVPTRKPR+K+WLF
Sbjct: 216 EVHYNSLYANGVLALPDVPTRKPRRKHWLF 245

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	0.907	0.836	0.766	4.7e-87
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	0.902	0.931	0.635	2.3e-71
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.889	0.582	0.519	1.2e-58
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.840	0.533	0.536	3.7e-55
TAIR|locus:2056133	189	AT2G39320 [Arabidopsis thalian	0.278	0.333	0.390	5.2e-21
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.756	0.223	0.358	3.6e-19
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.610	0.368	0.302	3.1e-13
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.575	0.296	0.284	4.6e-13
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.504	0.121	0.310	1.7e-12
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.504	0.121	0.310	1.7e-12

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
 Identities = 161/210 (76%), Positives = 178/210 (84%)

Query:    22 DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
             D +DD TIA ILA +E+ + EG+LGKRLSHLDSIPHTPR+N EIPD+NDA+ DHE LS R
Sbjct:    36 DTDDDQTIARILAEDESLRREGKLGKRLSHLDSIPHTPRVNREIPDINDATLDHELLSGR 95

Query:    82 LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
             L TYGLAELQ+EGDGNCQFRALADQLFRN DYHKHVRK + KQLK  RKLYE YVPM Y+
Sbjct:    96 LATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQQRKLYEEYVPMKYR 155

Query:   142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
              Y RKMKK GEWGDHVTLQAAADRF+AKICLVTSFRD  Y+EI+P +KNP RE WLSFWS
Sbjct:   156 HYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPHNKNPLREAWLSFWS 215

Query:   202 EVHYNSLYATG-----DVPTRKPRKKYWLF 226
             EVHYNSLYA G     DVPTRKPR+K+WLF
Sbjct:   216 EVHYNSLYANGVLALPDVPTRKPRRKHWLF 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
 Identities = 131/206 (63%), Positives = 163/206 (79%)

Query:    22 DAEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSER 81
             D EDD  IA +L SEE +K +G +G+RLS+L  +PH PRIN  IP++NDA+ DH+RL +R
Sbjct:    15 DTEDDRMIAFML-SEEYSKLDGAVGRRLSNLAPVPHVPRINCYIPNLNDATLDHQRLLQR 73

Query:    82 LTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYK 141
             L  YGL EL++ GDGNCQFRAL+DQL+R+P+YHK VR+E+ KQLK  R +YE YVPM YK
Sbjct:    74 LNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKECRSMYESYVPMKYK 133

Query:   142 GYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS 201
              Y +KM K GEWGDH+TLQAAADRF AKICL+TSFRDTC++EIIP+ + P   LWLSFWS
Sbjct:   134 RYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQYQAPKGVLWLSFWS 193

Query:   202 EVHYNSLYATGDVPTR-KPRKKYWLF 226
             EVHYNSLY     P + KP++K+WLF
Sbjct:   194 EVHYNSLYDIQAAPVQHKPKRKHWLF 219

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 107/206 (51%), Positives = 152/206 (73%)

Query:    23 AEDDHTIASILASEENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERL 82
             + DD ++ S+   EE+     ++GKRL+ +  I H P+INGE+P  ++   DHERL +RL
Sbjct:   143 SRDDDSVCSVEIEEESWS---EVGKRLNQMIPIAHVPKINGELPSEDEQISDHERLFQRL 199

Query:    83 TTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKG 142
               YGL E +IEGDGNCQFR+L+DQL+R+P++H  VR+++  QL + R++YEGYVPM Y  
Sbjct:   200 QLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVVNQLAYNREIYEGYVPMAYND 259

Query:   143 YLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSE 202
             YL+ MK++GEWGDHVTLQAAAD F  ++ ++TSF+DTCY+EI+P  +   R + LSFW+E
Sbjct:   260 YLKAMKRNGEWGDHVTLQAAADLFGVRMFVITSFKDTCYIEILPHFQKSNRLICLSFWAE 319

Query:   203 VHYNSLYATGD--VPTRKPRKKYWLF 226
             VHYNS+Y  G+  +P  K +KKYW+F
Sbjct:   320 VHYNSIYPEGELPIPEGKKKKKYWVF 345

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 103/192 (53%), Positives = 138/192 (71%)

Query:    37 ENAKAEGQLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDG 96
             +   A+G+ G+RL+ +  IP+ P+INGEIP   +A  DHERL  RL  +   E+++ GDG
Sbjct:   163 DQCDADGEFGRRLNQMVPIPYIPKINGEIPPEEEAVSDHERLRNRLEMFDFTEVKVPGDG 222

Query:    97 NCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDH 156
             NCQFRALADQL++  D HKHVR++I KQLK     Y+GYVPM++  YLRKM +SGEWGDH
Sbjct:   223 NCQFRALADQLYKTADRHKHVRRQIVKQLKSRPDSYQGYVPMDFSDYLRKMSRSGEWGDH 282

Query:   157 VTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVP- 215
             VTLQAAAD ++ KI ++TSF+DTCY+EI+P  +     ++LSFW+EVHYN++Y   D   
Sbjct:   283 VTLQAAADAYRVKIVVLTSFKDTCYIEILPTSQESKGVIFLSFWAEVHYNAIYLNRDTSE 342

Query:   216 TRKPRK-KYWLF 226
             T   RK K+W F
Sbjct:   343 TELQRKRKWWRF 354

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)]

 Score = 142 (55.0 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 25/64 (39%), Positives = 43/64 (67%)

Query:   147 MKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKD-KNPTRELWLSFWSEVHY 205
             +  + +WGD VTL+ AAD +Q KI L+TS +   ++E +PK  K P + + +S+ + +H+
Sbjct:    38 LSTNSQWGDEVTLRVAADVYQVKIILITSIKLIPFMEFLPKSQKEPDKVIHMSYLAGIHF 97

Query:   206 NSLY 209
             NS+Y
Sbjct:    98 NSIY 101

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 240 (89.5 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 66/184 (35%), Positives = 98/184 (53%)

Query:    38 NAKAEGQLGKRLSHLDS-IPHTPRIN-GEIPDVNDASFDHERLSERLTTYGLAEL-QIEG 94
             N   EG + K ++H  S I     +N   +P   +     +RL+ERL  Y L    +I G
Sbjct:   579 NLLLEGLVLKNMNHDASLISSNVLLNLHPLPQSKEVQIAQQRLNERLELYMLKNSKEIPG 638

Query:    95 DGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFR--KLYEG-----YVPMN-YKGYLRK 146
             DGNCQ  AL+DQL+ +  + + VRK I   L+  +  +L  G     +V  N +  Y   
Sbjct:   639 DGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKNKDFQLPNGATICQFVNTNNWDDYCND 698

Query:   147 MKKSGEWGDHVTLQAAADRFQAKICLVTSF--RDTCYVEIIPKDKNPTRELWLSFWSEVH 204
             M K+G WGDH+TL AAA+ F +KI +++S   +   ++EIIP      + L LS ++E H
Sbjct:   699 MSKNGNWGDHLTLLAAAEHFGSKISIISSVESQSNFFIEIIPSKILNDKVLLLSHYAEFH 758

Query:   205 YNSL 208
             Y SL
Sbjct:   759 YGSL 762

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 3.1e-13, P = 3.1e-13
 Identities = 43/142 (30%), Positives = 71/142 (50%)

Query:    74 DHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYE 133
             D  +   +L   GL  +Q+  DGNC FRA+ADQL  N D H   R  I   +   R+++E
Sbjct:    24 DLSQFRAQLDALGLKIIQVTADGNCFFRAIADQLEGNEDEHNKYRNMIVLYIVKNREMFE 83

Query:   134 GYVP--MNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNP 191
              ++   + ++ Y + M   G W  ++ LQAA+   ++ IC+  +     Y+      +  
Sbjct:    84 PFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTR-- 141

Query:   192 TRELWLSFWSEVHYNSLYATGD 213
             TR + LS+    HYNS+ +  D
Sbjct:   142 TRMIHLSYHDGEHYNSVRSKED 163

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 179 (68.1 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 39/137 (28%), Positives = 75/137 (54%)

Query:    77 RLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYV 136
             +  ++L  +G     + GDGNC FR++ADQL   P+ H+  R+ I K ++  + ++  ++
Sbjct:    54 KFQQQLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFI 113

Query:   137 P----MNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC-YVEIIPKDKNP 191
                   +++ Y+++M++   WG HV +QAA+  +   I +    +     V   P +KN 
Sbjct:   114 DDEEFESFEEYIQEMREDATWGGHVEIQAASLAYNVNITIHQMDQPRWEIVNHFPPEKNK 173

Query:   192 TRELWLSFWSEVHYNSL 208
             T  + LS+ ++ HYNS+
Sbjct:   174 T--IHLSYHNDEHYNSV 188

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query:    92 IEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMN--YKGYLRKMKK 149
             I  DGNC FRA++DQL+ + + +K +RK++ + L    +LY+ ++  +  YK Y+ ++  
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   150 SGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G WG  + LQA  + ++  I +     + C +EI     +  + L L + S  HYNS+
Sbjct:   115 DGTWGGQLELQAVGEIYKVNILIYQE--NGCILEI-KNHSDDNKCLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 179 (68.1 bits), Expect = 1.7e-12, P = 1.7e-12
 Identities = 37/119 (31%), Positives = 66/119 (55%)

Query:    92 IEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMN--YKGYLRKMKK 149
             I  DGNC FRA++DQL+ + + +K +RK++ + L    +LY+ ++  +  YK Y+ ++  
Sbjct:    55 IRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIERISL 114

Query:   150 SGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSL 208
              G WG  + LQA  + ++  I +     + C +EI     +  + L L + S  HYNS+
Sbjct:   115 DGTWGGQLELQAVGEIYKVNILIYQE--NGCILEI-KNHSDDNKCLQLHYASSEHYNSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_VI0062 hypothetical protein (226 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	4e-27

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  100 bits (250), Expect = 4e-27
 Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 10/123 (8%)

Query: 93  EGDGNCQFRALADQLF--RNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKS 150
            GDGNC F A++DQL      + H  +R+ + + L+  R+ +E ++  +   Y + + K 
Sbjct: 1   PGDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKD 60

Query: 151 GEWGDHVTLQAAADRFQAKICLV--TSFRDTCYVEIIPKD--KNPTRELWLSFWS----E 202
           G WG ++ + A A   +  I +      R T Y++I       N    + LS+       
Sbjct: 61  GAWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTG 120

Query: 203 VHY 205
            HY
Sbjct: 121 NHY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.95
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.94
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.93
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.72
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.6
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.53
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.81
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.62
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	91.56

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.5e-29  Score=228.76  Aligned_cols=183  Identities=34%  Similarity=0.585  Sum_probs=169.1

Q ss_pred             hhhhhcCCCCCCCCCCcccCCCCCCCchhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHH
Q 027257           44 QLGKRLSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFK  123 (226)
Q Consensus        44 ~~~~r~~~~~~~~~~p~~~~~~p~~~~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~  123 (226)
                      ++|++++++.+++++|.+++.+|+..+...+++++.+++..+|+..++|.+||||+|||+|+|+|++.+.|..+|+++++
T Consensus       175 ~~g~~in~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~d  254 (371)
T KOG2605|consen  175 EVGVRINDYNPKVLVPFINGLPPSEEEPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVD  254 (371)
T ss_pred             hhcccccCCCccccccccccCCCchHHHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHHHHHH--hhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCC
Q 027257          124 QLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAAD--RFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS  201 (226)
Q Consensus       124 ~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~--~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~  201 (226)
                      ++..+++.|+.|++++|.+|+++|++++.||+|+|+||+|.  -+..++.++++.++++++.+.|....+...+++.||.
T Consensus       255 q~~~e~~~~~~~vt~~~~~y~k~kr~~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~  334 (371)
T KOG2605|consen  255 QLKKERDFYEDYVTEDFTSYIKRKRADGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWV  334 (371)
T ss_pred             HHhhcccccccccccchhhcccccccCCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccc
Confidence            99999999999999999999999999999999999999998  6677778888888999999888777777789999999


Q ss_pred             CCcceeeecC--CCCC---CCCccccccCC
Q 027257          202 EVHYNSLYAT--GDVP---TRKPRKKYWLF  226 (226)
Q Consensus       202 ~~HYdsl~~~--~~~p---~~~~~~~~~~~  226 (226)
                      ..||+.++..  ....   ..++|+|+|++
T Consensus       335 ~~h~~~~~~~~~~~~s~~~~~~~~r~~~~~  364 (371)
T KOG2605|consen  335 EVHYNTARHSGKSADSATLEEKTKRKSLRR  364 (371)
T ss_pred             hhhhhhcccccccccccchhhccCCCchhh
Confidence            9999999985  3332   33788899875

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.94  E-value=3.7e-27  Score=183.71  Aligned_cols=107  Identities=31%  Similarity=0.598  Sum_probs=91.6

Q ss_pred             cCCCchhHHHHHHHHh----cCCcchHHHHHHHHHHHH-hhhhhhcccCCCcHHHHHHhhccCCCCCChHHHHHHHHhhC
Q 027257           93 EGDGNCQFRALADQLF----RNPDYHKHVRKEIFKQLK-HFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQ  167 (226)
Q Consensus        93 ~gDGNClFrAls~qL~----~~~~~h~~vR~~vv~~l~-~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~  167 (226)
                      ||||||||||||+|++    +++..|.+||++|++||+ .|++.|..|+..+      +|+++|+|||++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999999988644      8999999999999999999999


Q ss_pred             CcEEEEEccCCc--eeEEEcC--CCCCCCCeEEEEeCC-----CCcc
Q 027257          168 AKICLVTSFRDT--CYVEIIP--KDKNPTRELWLSFWS-----EVHY  205 (226)
Q Consensus       168 v~I~V~~~~~~~--~~i~i~p--~~~~~~~~I~L~y~~-----~~HY  205 (226)
                      ++|+||+.....  .++.+.+  ......++|+|+|..     ++||
T Consensus        75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            999999764433  3444433  123567899999998     8998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.1e-26  Score=202.43  Aligned_cols=140  Identities=21%  Similarity=0.360  Sum_probs=121.9

Q ss_pred             chhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcC---CcchHHHHHHHHHHHHhhhhhhcccCC---------
Q 027257           70 DASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRN---PDYHKHVRKEIFKQLKHFRKLYEGYVP---------  137 (226)
Q Consensus        70 ~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~---~~~h~~vR~~vv~~l~~n~~~f~~fv~---------  137 (226)
                      ...|+.+.|.+.|...||...+||.||+|+|+||++||--.   .-....+|..+++||++|.++|.+|+.         
T Consensus       142 ~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~~  221 (302)
T KOG2606|consen  142 AKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSLG  221 (302)
T ss_pred             hhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccCC
Confidence            34588899999999999999999999999999999998532   246789999999999999999999973         


Q ss_pred             -CcHHHHHHhhccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCC-----CCcceeeecC
Q 027257          138 -MNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS-----EVHYNSLYAT  211 (226)
Q Consensus       138 -~~~~~Yl~~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~-----~~HYdsl~~~  211 (226)
                       .+|+.||+.|+.++.|||++||.|+|.+|++||.||..+  .+...+++.+.+ .++|.|+|+.     |.||||+.+.
T Consensus       222 ~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~--~p~~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~~  298 (302)
T KOG2606|consen  222 PEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQAD--GPILEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTPL  298 (302)
T ss_pred             HHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecC--CCceeechhhCC-CCCeeeehHHhHHHHHhhhcccccc
Confidence             259999999999999999999999999999999999965  445667766544 6899999986     6899999775


Q ss_pred             C
Q 027257          212 G  212 (226)
Q Consensus       212 ~  212 (226)
                      .
T Consensus       299 ~  299 (302)
T KOG2606|consen  299 K  299 (302)
T ss_pred             c
Confidence            4

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=1.2e-17  Score=145.53  Aligned_cols=127  Identities=24%  Similarity=0.399  Sum_probs=104.7

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcCCcc-hHHHHHHHHHHHHhhhhhhcc-cCCCcHHHHHHhhccCCCCCChHHHHHHHH
Q 027257           87 LAELQIEGDGNCQFRALADQLFRNPDY-HKHVRKEIFKQLKHFRKLYEG-YVPMNYKGYLRKMKKSGEWGDHVTLQAAAD  164 (226)
Q Consensus        87 L~~~~V~gDGNClFrAls~qL~~~~~~-h~~vR~~vv~~l~~n~~~f~~-fv~~~~~~Yl~~m~~~g~WGg~ieL~AlA~  164 (226)
                      |.++.||.|..|||+||+.-+.+.-.. -.++|+.+.+...+||+.|.. +++..-.+||..+.++..|||.|||..+|+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            567889999999999999999875433 368999999999999999976 456789999999999999999999999999


Q ss_pred             hhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCCCCC
Q 027257          165 RFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPT  216 (226)
Q Consensus       165 ~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~~p~  216 (226)
                      .|+|.|+|++-+  +..+.-+.++......++|.| +|.|||++.-...-|+
T Consensus       190 ~ygveI~vvDiq--t~rid~fged~~~~~rv~lly-dGIHYD~l~m~~~~~~  238 (307)
T KOG3288|consen  190 YYGVEICVVDIQ--TVRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNEFKPT  238 (307)
T ss_pred             hhceeEEEEecc--eeeehhcCCCCCCCceEEEEe-cccccChhhhccCCcc
Confidence            999999999853  334444444455566778888 7999999987664433

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.60  E-value=8.3e-15  Score=128.11  Aligned_cols=94  Identities=21%  Similarity=0.294  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHhhhhhhcccCC----CcHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCC---c--eeEEEc
Q 027257          116 HVRKEIFKQLKHFRKLYEGYVP----MNYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD---T--CYVEII  185 (226)
Q Consensus       116 ~vR~~vv~~l~~n~~~f~~fv~----~~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~---~--~~i~i~  185 (226)
                      .+|..+..||+.|++.|.+|++    .++++||. .+...+.-+||+.+.|||++++++|.|+.-+++   .  ....+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            5788899999999999999997    67999996 678888899999999999999999999986643   1  223333


Q ss_pred             CCCCCCCCeEEEEeCCCCcceeeec
Q 027257          186 PKDKNPTRELWLSFWSEVHYNSLYA  210 (226)
Q Consensus       186 p~~~~~~~~I~L~y~~~~HYdsl~~  210 (226)
                      |......+.|+|.| .++|||.+|+
T Consensus       221 ~~~~~~~~~i~LLy-rpgHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLY-RPGHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred             CccCCCCCEEEEEE-cCCccccccC
Confidence            33335678999999 5669999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.53  E-value=2.7e-14  Score=122.95  Aligned_cols=94  Identities=19%  Similarity=0.305  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHhhhhhhcccCC--CcHHHHHHh-hccCCCCCChHHHHHHHHhhCCcEEEEEccCCce-eE--EEcCCC
Q 027257          115 KHVRKEIFKQLKHFRKLYEGYVP--MNYKGYLRK-MKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTC-YV--EIIPKD  188 (226)
Q Consensus       115 ~~vR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~~-m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~-~i--~i~p~~  188 (226)
                      +.+|..+..+|++|++.|++||+  ++.++||.. +.-...-.|||+|-||++++++.|.|...++..+ .+  ..+|  
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fp--  234 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFP--  234 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCc--
Confidence            46888899999999999999997  489999974 5555666899999999999999999998766432 11  2234  


Q ss_pred             CCCCCeEEEEeCCCCcceeeecC
Q 027257          189 KNPTRELWLSFWSEVHYNSLYAT  211 (226)
Q Consensus       189 ~~~~~~I~L~y~~~~HYdsl~~~  211 (226)
                      ....+.|+|.| ..+|||.||+.
T Consensus       235 e~s~P~I~LLY-rpGHYdilY~~  256 (256)
T KOG3991|consen  235 EASAPEIYLLY-RPGHYDILYKK  256 (256)
T ss_pred             cccCceEEEEe-cCCccccccCC
Confidence            35678999999 68899999863

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.1e-09  Score=97.36  Aligned_cols=127  Identities=13%  Similarity=0.097  Sum_probs=90.4

Q ss_pred             HHHHhhHCCcEEEEecCCCchhHHHHHHHHhcC-----CcchHHHHHHHHHHHHhhhhhhcccCC-------CcHHHHHH
Q 027257           78 LSERLTTYGLAELQIEGDGNCQFRALADQLFRN-----PDYHKHVRKEIFKQLKHFRKLYEGYVP-------MNYKGYLR  145 (226)
Q Consensus        78 l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~-----~~~h~~vR~~vv~~l~~n~~~f~~fv~-------~~~~~Yl~  145 (226)
                      ++..+..-++.-.++.|||+|+|-+||+||.-.     -+.-...|-.-..|...+...|.++.-       ..|++|++
T Consensus       162 ~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~dt~~n  241 (306)
T COG5539         162 IDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWDTYVN  241 (306)
T ss_pred             cchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHHHHHh
Confidence            444556667777889999999999999998421     122355555555666666677776642       27999999


Q ss_pred             hhccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCC----CCcceee
Q 027257          146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWS----EVHYNSL  208 (226)
Q Consensus       146 ~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~----~~HYdsl  208 (226)
                      .|..+..||+.+|+++||..|++|+.++...+  +.+...+...+.  +..+.|..    -+|||++
T Consensus       242 e~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~--~~ik~n~c~~~~--~~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         242 EVLFDASDGITIEIQQLASLLKNPHYYTNTAS--PSIKCNICGTGF--VGEKDYYAHALATGHYNFG  304 (306)
T ss_pred             hhcccccccchHHHHHHHHHhcCceEEeecCC--ceEEeecccccc--chhhHHHHHHHhhcCcccc
Confidence            99999999999999999999999999997543  456665543222  23333332    3599986

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.1e-08  Score=91.22  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=90.1

Q ss_pred             CCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCC-cHHHHHHhhccCCCCC-ChHHHHHHHHhhCCcEE
Q 027257           94 GDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPM-NYKGYLRKMKKSGEWG-DHVTLQAAADRFQAKIC  171 (226)
Q Consensus        94 gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~-~~~~Yl~~m~~~g~WG-g~ieL~AlA~~~~v~I~  171 (226)
                      .|..|+|+|.+..++.-  .-..+|..+...+.+||+.|...+.+ +--.|+.++.+...|| |++|+.++++.|++.|+
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            57999999999998763  57899999999999999999998864 8899999999999999 99999999999999999


Q ss_pred             EEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeee
Q 027257          172 LVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLY  209 (226)
Q Consensus       172 V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~  209 (226)
                      |+..+.+. ...+.+..  -.-.+.+.| .+.|||...
T Consensus       197 ~Vdv~~~~-~dr~~~~~--~~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDS-EDRYNSHP--YVQRISILF-TGIHFDEET  230 (306)
T ss_pred             eeecchhH-HhhccCCh--hhhhhhhhh-cccccchhh
Confidence            99865432 22234332  223456667 689999876

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.56  E-value=0.44  Score=36.11  Aligned_cols=70  Identities=16%  Similarity=0.204  Sum_probs=46.4

Q ss_pred             ecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhc--cCCCCCChHHHHHHHHhhCCc
Q 027257           92 IEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMK--KSGEWGDHVTLQAAADRFQAK  169 (226)
Q Consensus        92 V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~--~~g~WGg~ieL~AlA~~~~v~  169 (226)
                      +..|.|||.-|||.+|.-+-+   .|    -.-|..|..        ..+.|+..++  ++.+|-|-+   .+|+.++|.
T Consensus         3 ~sR~NNCLVVAis~~L~~T~e---~l----~~~M~An~~--------~i~~y~~W~r~~~~STW~DC~---mFA~~LkVs   64 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVTLE---KL----DNLMQANVS--------TIKKYHTWLRKKRPSTWDDCR---MFADALKVS   64 (104)
T ss_pred             ccCCCCeEeehHHHHhcchHH---HH----HHHHHhhHH--------HHHHHHHHHhcCCCCcHHHHH---HHHHhheeE
Confidence            467999999999999966532   11    122333322        3677787654  567897764   589999999


Q ss_pred             EEEE-EccCCc
Q 027257          170 ICLV-TSFRDT  179 (226)
Q Consensus       170 I~V~-~~~~~~  179 (226)
                      |.|- .+...+
T Consensus        65 m~vkV~~~~~~   75 (104)
T PF05415_consen   65 MQVKVLSDKPY   75 (104)
T ss_pred             EEEEEcCCCCc
Confidence            9874 344333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		2e-10
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		1e-09
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		3e-08

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 63/127 (49%), Gaps = 4/127 (3%)
Query: 86  GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
           G    Q++ DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ 
Sbjct: 45  GFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 104
Query: 146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPK----DKNPTRELWLSFWS 201
           + +K+   G+H+ +QA A+ +   + +      T  VE I       +N    + +S+  
Sbjct: 105 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 164
Query: 202 EVHYNSL 208
            +HYNS+
Sbjct: 165 NIHYNSV 171

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Query: 86  GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
           G    Q + DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ 
Sbjct: 45  GFIIKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYIN 104
Query: 146 KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPK----DKNPTRELWLSFWS 201
           + +K+   G+H+  QA A+ +   + +      T  VE I       +N    + +S+  
Sbjct: 105 RKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHR 164
Query: 202 EVHYNSL 208
            +HYNS+
Sbjct: 165 NIHYNSV 171

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 5/125 (4%)
Query: 86  GLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLR 145
           G    Q + DG C FRA+ADQ++ + D H+ VRK     L      +  YV  ++  Y+ 
Sbjct: 58  GFIIKQXKEDGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYIN 117
Query: 146 KMKKSGEWGDHVTLQAAADRFQ--AKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEV 203
           + +K+   G+H+  QA A+ +    ++   ++     +  I   +  P R   +S+   +
Sbjct: 118 RKRKNNCHGNHIEXQAXAEXYNRPVEVYQYSTEPINTFHGIHQNEDEPIR---VSYHRNI 174
Query: 204 HYNSL 208
           HYNS+
Sbjct: 175 HYNSV 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
3pfy_A	185	OTU domain-containing protein 5; structural genomi	3e-35
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-32
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-31
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	8e-22
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	8e-04

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  122 bits (307), Expect = 3e-35
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 4/151 (2%)

Query: 62  NGEIPDVNDASFDHER---LSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVR 118
              I  ++ A+ + +            G    Q++ DG C FRA+ADQ++ + D H+ VR
Sbjct: 31  AARIEAMDPATVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVR 90

Query: 119 KEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD 178
           K     L      +  YV  ++  Y+ + +K+   G+H+ +QA A+ +   +  V  +  
Sbjct: 91  KHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVE-VYQYST 149

Query: 179 TCYVEIIPKDKNPTRELWLSFWSEVHYNSLY 209
                     +N    + +S+   +HYNS+ 
Sbjct: 150 EPINTFHGIHQNEDEPIRVSYHRNIHYNSVV 180

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  116 bits (292), Expect = 1e-32
 Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 15/173 (8%)

Query: 49  LSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLF 108
           +  L S+  T  I G    V++  F+     E +        +  GDGNC + ++A+   
Sbjct: 3   MDFLRSLDWTQVIAG--QYVSNPRFNISDYFEIV--------RQPGDGNCFYHSIAELTM 52

Query: 109 RNPDYHK-HVRKEIFKQLKHF---RKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQAAAD 164
            N   H  H  K + +         +     V ++ + YL++M    EWG  +     A 
Sbjct: 53  PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASMLAK 112

Query: 165 RFQAKICLVTSFRDTCYVEIIPKDKN-PTRELWLSFWSEVHYNSLYATGDVPT 216
                I + T          I          + L    + H+++L       T
Sbjct: 113 EMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFET 165

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  113 bits (283), Expect = 1e-31
 Identities = 35/181 (19%), Positives = 65/181 (35%), Gaps = 21/181 (11%)

Query: 49  LSHLDSIPHTPRINGEIPDVNDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLF 108
           +  L S+  T  I G    V++  F+     E +        +  GDGNC + ++A+   
Sbjct: 3   MDFLRSLDWTQVIAG--QYVSNPRFNISDYFEIV--------RQPGDGNCFYHSIAELTM 52

Query: 109 RNPDYHKHVRKEIFKQLKHFRKLYEGYVP------MNYKGYLRKMKKSGEWGDHVTLQAA 162
             P+   H    I +  +   + Y    P      ++ + YL++M    EWG  +     
Sbjct: 53  --PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASML 110

Query: 163 ADRFQAKICLVTSFRDTCYVEII-PKDKNPTRELWLSFWSEVHYNSLY--ATGDVPTRKP 219
           A      I + T          I   D +    + L    + H+++L      +  TR+ 
Sbjct: 111 AKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLHSGQTHFDALRILPQFETDTREA 170

Query: 220 R 220
            
Sbjct: 171 L 171

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 88.5 bits (219), Expect = 8e-22
 Identities = 27/134 (20%), Positives = 54/134 (40%), Gaps = 6/134 (4%)

Query: 84  TYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLY-EGYVPMNYKG 142
              L+   +  D +C F A+A  +F+       +R+ + K++ +    + +  +    K 
Sbjct: 17  ENVLSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKD 75

Query: 143 YLRKMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSE 202
           Y + + K   WG  + +   +D     I +V    D   +E   +DK     L L  ++ 
Sbjct: 76  YAQWILKMESWGGAIEIGIISDALAVAIYVVDI--DAVKIEKFNEDKFDNYILIL--FNG 131

Query: 203 VHYNSLYATGDVPT 216
           +HY+SL        
Sbjct: 132 IHYDSLTMNEFKTV 145

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A Length = 234

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 20/100 (20%), Positives = 40/100 (40%), Gaps = 9/100 (9%)

Query: 116 HVRKEIFKQLKHFRKLYEGYVP--MNYKGYLRK-MKKSGEWGDHVTLQAAADRFQAKICL 172
           ++R      L+   K +E ++      K + ++ ++   +  DH+ + A A      I +
Sbjct: 137 YLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQV 196

Query: 173 VTSFR---DTCYVEIIPKDKNPTRELWLSFWSEVHYNSLY 209
               R    T    I P+   P   ++L +    HY+ LY
Sbjct: 197 EYMDRGEGGTTNPHIFPEGSEPK--VYLLY-RPGHYDILY 233

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.98
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.97
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.9
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.86
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.83
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.8
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	98.9
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	98.69

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=5.9e-39  Score=269.77  Aligned_cols=142  Identities=23%  Similarity=0.402  Sum_probs=106.1

Q ss_pred             CchhhHHHHHHHHhhHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhc
Q 027257           69 NDASFDHERLSERLTTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMK  148 (226)
Q Consensus        69 ~~~~~~~~~l~~~L~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~  148 (226)
                      +...++.+...+.|+.+||++++|+|||||||||||+||+++++.|..||+.|++||++|++.|.+|++++|++||++|+
T Consensus        41 ~~~~~e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~  120 (185)
T 3pfy_A           41 TVEQQEHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKR  120 (185)
T ss_dssp             HHHHHHHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC------------
T ss_pred             CHHHHHHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhh
Confidence            33455655555555899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEc-CCCCCCCCeEEEEeCCCCcceeeecCC
Q 027257          149 KSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEII-PKDKNPTRELWLSFWSEVHYNSLYATG  212 (226)
Q Consensus       149 ~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~-p~~~~~~~~I~L~y~~~~HYdsl~~~~  212 (226)
                      ++++|||++||+|||++|+++|+|++...  +.+.++ +......++|+|+|++++|||||+...
T Consensus       121 ~~~~WGg~iEL~AlS~~~~v~I~V~~~~~--~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          121 KNNCHGNHIEMQAMAEMYNRPVEVYQYST--EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             -----CCHHHHHHHHHHHTSCEEEESSCS--SCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             CCCccchHHHHHHHHHhhCCcEEEEECCC--CCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            99999999999999999999999998642  233443 333456789999999999999998653

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=100.00  E-value=5.8e-35  Score=250.16  Aligned_cols=126  Identities=18%  Similarity=0.239  Sum_probs=111.8

Q ss_pred             hHCCcEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhhc-ccCCCcHHHHHHhhccCCCCCChHHHHH
Q 027257           83 TTYGLAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLYE-GYVPMNYKGYLRKMKKSGEWGDHVTLQA  161 (226)
Q Consensus        83 ~~~gL~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f~-~fv~~~~~~Yl~~m~~~g~WGg~ieL~A  161 (226)
                      ...||.+++|||||||||||||+|| ++++.|..||+.|++||++|++.|. .|++++|++||++|+++++|||++||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            4558999999999999999999999 9999999999999999999999996 5678999999999999999999999999


Q ss_pred             HHHhhCCcEEEEEccCCceeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCC
Q 027257          162 AADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGD  213 (226)
Q Consensus       162 lA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~  213 (226)
                      ||++|+++|.|++... .+.+.|.+. . ..++|+|+|+ ++|||||+...+
T Consensus        95 ls~~~~~~I~V~~~~~-~~~~~~~~~-~-~~~~I~L~Y~-g~HYdsl~~~~d  142 (212)
T 3by4_A           95 ISDALAVAIYVVDIDA-VKIEKFNED-K-FDNYILILFN-GIHYDSLTMNEF  142 (212)
T ss_dssp             HHHHHTCEEEEEETTT-TEEEEESTT-T-CSEEEEEEEC-SSCEEEEEETTT
T ss_pred             HHHHHCCCEEEEECCC-CCeEEeCCC-C-CCCeEEEEEc-CCcceEEecCCC
Confidence            9999999999999752 345556553 2 5789999997 899999999433

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.98  E-value=3e-32  Score=228.95  Aligned_cols=125  Identities=18%  Similarity=0.287  Sum_probs=107.6

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHH
Q 027257           87 LAELQIEGDGNCQFRALADQLFRN-PDY-----HKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQ  160 (226)
Q Consensus        87 L~~~~V~gDGNClFrAls~qL~~~-~~~-----h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~  160 (226)
                      +.+.+|+|||||||||||+||+++ +..     |..||+.|++||++|++.  .+++++|++||++|+++++|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            778889999999999999999998 666     999999999999999998  356889999999999999999999999


Q ss_pred             HHHHhhCCcEEEEEccCCc---eeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCCCC
Q 027257          161 AAADRFQAKICLVTSFRDT---CYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVP  215 (226)
Q Consensus       161 AlA~~~~v~I~V~~~~~~~---~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~~p  215 (226)
                      |+|++|+++|.|++.+..+   ..+.+.+.  ...++|+|+|++++|||+|++..+-.
T Consensus       109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~--~~~~~I~L~Y~g~~HYdsl~~~~~~~  164 (185)
T 3phx_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFE  164 (185)
T ss_dssp             HHHHHHCCCEEEEEC--CCBCCEEEEESSC--CTTTSEEEEEETTTEEEEEEECGGGC
T ss_pred             HHHHHHCCcEEEEEecCCCCceEEEEcCCC--CCCCEEEEEECCCcCchhceECCCCC
Confidence            9999999999999865443   23455543  34789999998879999999987543

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.97  E-value=1e-31  Score=230.98  Aligned_cols=127  Identities=18%  Similarity=0.288  Sum_probs=110.0

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcC-Ccc-----hHHHHHHHHHHHHhhhhhhcccCCCcHHHHHHhhccCCCCCChHHHH
Q 027257           87 LAELQIEGDGNCQFRALADQLFRN-PDY-----HKHVRKEIFKQLKHFRKLYEGYVPMNYKGYLRKMKKSGEWGDHVTLQ  160 (226)
Q Consensus        87 L~~~~V~gDGNClFrAls~qL~~~-~~~-----h~~vR~~vv~~l~~n~~~f~~fv~~~~~~Yl~~m~~~g~WGg~ieL~  160 (226)
                      +.+.+|+|||||||||||+||+++ +..     |..||+.|++||++|++.  .+++++|++||++|+++|+|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~--~~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHH--HHHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhh--hhcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            778899999999999999999998 566     899999999999999998  356889999999999999999999999


Q ss_pred             HHHHhhCCcEEEEEccCC--c-eeEEEcCCCCCCCCeEEEEeCCCCcceeeecCCCCCCC
Q 027257          161 AAADRFQAKICLVTSFRD--T-CYVEIIPKDKNPTRELWLSFWSEVHYNSLYATGDVPTR  217 (226)
Q Consensus       161 AlA~~~~v~I~V~~~~~~--~-~~i~i~p~~~~~~~~I~L~y~~~~HYdsl~~~~~~p~~  217 (226)
                      |+|++|+++|+|++.+..  . ..+.+.+.  ...++|+|+|++++|||+|++..+....
T Consensus       109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~--~~~~~I~L~Y~g~~HYdSL~~~~d~~~~  166 (219)
T 3phu_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDG--DVFTAVNLLHSGQTHFDALRILPQFETD  166 (219)
T ss_dssp             HHHHHTTCCEEEEEESSSSBEEEEEEESSC--CTTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred             HHHHHhCCCEEEEEecCCCCceeEEEecCC--CCCCeEEEEECCCcCchhheECCCCCCC
Confidence            999999999999986544  2 34555553  3478999999888999999998876443

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.90  E-value=3.2e-23  Score=179.64  Aligned_cols=95  Identities=15%  Similarity=0.283  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEE--EcCCCC
Q 027257          115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVE--IIPKDK  189 (226)
Q Consensus       115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~--i~p~~~  189 (226)
                      ..+|..+..||++|++.|.+|+++  ++++||+ .+...++||||+||+|||++|+++|.|+..++...-+.  ..|.  
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~--  210 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPE--  210 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCC--
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCC--
Confidence            458999999999999999999975  8999999 89999999999999999999999999998665431121  1232  


Q ss_pred             CCCCeEEEEeCCCCcceeeecCC
Q 027257          190 NPTRELWLSFWSEVHYNSLYATG  212 (226)
Q Consensus       190 ~~~~~I~L~y~~~~HYdsl~~~~  212 (226)
                      ...+.|+|+|. ++|||+|++.+
T Consensus       211 ~~~~~I~LlY~-pgHYdily~~~  232 (234)
T 1tff_A          211 AATPSVYLLYK-TSHYNILYAAD  232 (234)
T ss_dssp             CSSCSEEEEEE-TTEEEEEEECC
T ss_pred             CCCCeEEEEEC-CCCceecccCC
Confidence            35678999996 55999999864

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.86  E-value=4.5e-21  Score=166.13  Aligned_cols=93  Identities=19%  Similarity=0.282  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCCc---eeEEEcCCC
Q 027257          115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRDT---CYVEIIPKD  188 (226)
Q Consensus       115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~---~~i~i~p~~  188 (226)
                      ..+|..++.||+.|++.|.+|+++  ++++||+ .+..+++||||++|+|||++|+++|.|+..++..   ......|. 
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~-  214 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE-  214 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEEST-
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCC-
Confidence            368999999999999999999975  8999997 6999999999999999999999999999866542   11223343 


Q ss_pred             CCCCCeEEEEeCCCCcceeeec
Q 027257          189 KNPTRELWLSFWSEVHYNSLYA  210 (226)
Q Consensus       189 ~~~~~~I~L~y~~~~HYdsl~~  210 (226)
                       ...+.|+|+|. ++|||+||+
T Consensus       215 -~~~p~I~LlY~-pgHYdiLy~  234 (234)
T 2zfy_A          215 -GSEPKVYLLYR-PGHYDILYK  234 (234)
T ss_dssp             -TCCCSEEEEEE-TTEEEEEEC
T ss_pred             -CCCCeEEEEEC-CCCcccCCC
Confidence             34678999997 469999986

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.83  E-value=3e-20  Score=164.76  Aligned_cols=100  Identities=16%  Similarity=0.221  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCC--c--eeEE-EcC
Q 027257          115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD--T--CYVE-IIP  186 (226)
Q Consensus       115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~--~--~~i~-i~p  186 (226)
                      ..+|..+..||+.|++.|.+|+++  ++++||+ .+...++||||++|+|||++|+++|.|+..++.  +  .... + |
T Consensus       171 ~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-p  249 (284)
T 4dhi_B          171 MFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-P  249 (284)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-S
T ss_pred             HHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-C
Confidence            468999999999999999999975  8999998 899999999999999999999999999876542  1  1222 3 6


Q ss_pred             CCC-CCCCeEEEEeCCCCcceeeecCCCCCC
Q 027257          187 KDK-NPTRELWLSFWSEVHYNSLYATGDVPT  216 (226)
Q Consensus       187 ~~~-~~~~~I~L~y~~~~HYdsl~~~~~~p~  216 (226)
                      ... ...+.|+|.| .++|||.||+....|.
T Consensus       250 ~~~~~~~p~I~LLY-rpgHYDILY~~~p~~~  279 (284)
T 4dhi_B          250 SDDQQIAPEITLLY-RPGHYDVIYKKDSTEA  279 (284)
T ss_dssp             CCCSCCCCSEEEEE-ETTEEEEEEECC----
T ss_pred             CCCCCCCCEEEEee-cCCCccccccCCCCch
Confidence            543 2347899999 5789999999986654

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.80  E-value=1.7e-19  Score=166.84  Aligned_cols=93  Identities=19%  Similarity=0.283  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccCCC--cHHHHHH-hhccCCCCCChHHHHHHHHhhCCcEEEEEccCC-c-e-eEEEcCCC
Q 027257          115 KHVRKEIFKQLKHFRKLYEGYVPM--NYKGYLR-KMKKSGEWGDHVTLQAAADRFQAKICLVTSFRD-T-C-YVEIIPKD  188 (226)
Q Consensus       115 ~~vR~~vv~~l~~n~~~f~~fv~~--~~~~Yl~-~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~-~-~-~i~i~p~~  188 (226)
                      ..+|..+..||+.|++.|.+|+++  ++++||+ .+...++||||++|+|||+.|+++|.|+..++. . . .....|. 
T Consensus       301 ~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~-  379 (399)
T 4ddg_A          301 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE-  379 (399)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT-
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC-
Confidence            458999999999999999999975  7999999 899999999999999999999999999875542 1 1 1122453 


Q ss_pred             CCCCCeEEEEeCCCCcceeeec
Q 027257          189 KNPTRELWLSFWSEVHYNSLYA  210 (226)
Q Consensus       189 ~~~~~~I~L~y~~~~HYdsl~~  210 (226)
                       ...+.|+|.| ..+|||.||+
T Consensus       380 -~~~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          380 -GSEPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             -TCCCCCEEEE-ETBEEEEEEC
T ss_pred             -CCCCEEEEEE-cCCccccCCC
Confidence             3467899999 5779999985

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=98.90  E-value=1.4e-08  Score=92.18  Aligned_cols=128  Identities=18%  Similarity=0.311  Sum_probs=88.0

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhh-h-----------hcccCC-----------CcHHHH
Q 027257           87 LAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRK-L-----------YEGYVP-----------MNYKGY  143 (226)
Q Consensus        87 L~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~-~-----------f~~fv~-----------~~~~~Y  143 (226)
                      |....+.||||||.+|+|.+++|.++....+|+.+.+-|+.... .           +..|..           .+|+.-
T Consensus       112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I  191 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL  191 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence            45667899999999999999999999999999999998886431 1           122321           245555


Q ss_pred             HHhhccCC------C-C--CChHHHHHHHHhhCCcEEEEEcc--CC---c-ee--E----EEcCC----CCCCCCeEEEE
Q 027257          144 LRKMKKSG------E-W--GDHVTLQAAADRFQAKICLVTSF--RD---T-CY--V----EIIPK----DKNPTRELWLS  198 (226)
Q Consensus       144 l~~m~~~g------~-W--Gg~ieL~AlA~~~~v~I~V~~~~--~~---~-~~--i----~i~p~----~~~~~~~I~L~  198 (226)
                      ++..+...      . +  -.++.+.++|+++++||+||...  ++   . .+  +    .|.|-    ......||.|+
T Consensus       192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg  271 (390)
T 3dkb_A          192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG  271 (390)
T ss_dssp             HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred             HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence            54433221      1 2  24888999999999999999622  11   1 11  1    12332    23346799999


Q ss_pred             eCCCCcceeeecCCCCC
Q 027257          199 FWSEVHYNSLYATGDVP  215 (226)
Q Consensus       199 y~~~~HYdsl~~~~~~p  215 (226)
                      |.+ +||.+|+.+++-+
T Consensus       272 Y~s-~HFsaLV~me~~~  287 (390)
T 3dkb_A          272 YDS-HHFVPLVTLKDSG  287 (390)
T ss_dssp             ECS-SCEEEEEEBCSSS
T ss_pred             ecc-CceeeeeecccCC
Confidence            964 7999999987543

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=98.69  E-value=6.9e-08  Score=88.93  Aligned_cols=127  Identities=13%  Similarity=0.143  Sum_probs=91.3

Q ss_pred             cEEEEecCCCchhHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhh-c---------------ccC--C----CcHHHHH
Q 027257           87 LAELQIEGDGNCQFRALADQLFRNPDYHKHVRKEIFKQLKHFRKLY-E---------------GYV--P----MNYKGYL  144 (226)
Q Consensus        87 L~~~~V~gDGNClFrAls~qL~~~~~~h~~vR~~vv~~l~~n~~~f-~---------------~fv--~----~~~~~Yl  144 (226)
                      |......||||||-+|+|..++|.++....+|+.+.+-|++....| .               .|.  +    .+|+.-+
T Consensus       189 L~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv  268 (454)
T 3zrh_A          189 LYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFIL  268 (454)
T ss_dssp             EEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred             eeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH
Confidence            4556789999999999999999999999999999999888633221 1               122  1    2455555


Q ss_pred             HhhccCCCCCChHHHHHHHHhhCCcEEEEEccC-----Ccee--E----EEcCCC----CCCCCeEEEEeCCCCcceeee
Q 027257          145 RKMKKSGEWGDHVTLQAAADRFQAKICLVTSFR-----DTCY--V----EIIPKD----KNPTRELWLSFWSEVHYNSLY  209 (226)
Q Consensus       145 ~~m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~-----~~~~--i----~i~p~~----~~~~~~I~L~y~~~~HYdsl~  209 (226)
                      +..+.+|.=-.++.+.++|+++++||+||...-     ...+  +    .|.|-.    .....||.|+|. ..||.+|+
T Consensus       269 ~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY~-~gHFsaLV  347 (454)
T 3zrh_A          269 SLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGYT-RGHFSALV  347 (454)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEEE-TTEEEEEE
T ss_pred             HHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEec-ccceeeee
Confidence            555677766678999999999999999997421     1011  1    133422    234579999996 46999999


Q ss_pred             cCCCC
Q 027257          210 ATGDV  214 (226)
Q Consensus       210 ~~~~~  214 (226)
                      .+++-
T Consensus       348 ~~~~~  352 (454)
T 3zrh_A          348 AMEND  352 (454)
T ss_dssp             EBCCC
T ss_pred             ecccc
Confidence            98864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	2e-11

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 2e-11
 Identities = 12/111 (10%), Positives = 35/111 (31%), Gaps = 8/111 (7%)

Query: 106 QLFRNPDYHK----HVRKEIFKQLKHFRKLYEGYVPMNYKG---YLRKMKKSGEWGDHVT 158
           ++F +          +R      +++    +  ++            +++      DH+ 
Sbjct: 114 KVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQ 173

Query: 159 LQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPTRELWLSFWSEVHYNSLY 209
           + A +      + +         +      +  T  ++L +    HYN LY
Sbjct: 174 ITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILY 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.88

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=172.89  Aligned_cols=97  Identities=14%  Similarity=0.230  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhhhhhhcccCC--CcHHHHHHh-hccCCCCCChHHHHHHHHhhCCcEEEEEccCCceeEEEcCCCCCCC
Q 027257          116 HVRKEIFKQLKHFRKLYEGYVP--MNYKGYLRK-MKKSGEWGDHVTLQAAADRFQAKICLVTSFRDTCYVEIIPKDKNPT  192 (226)
Q Consensus       116 ~vR~~vv~~l~~n~~~f~~fv~--~~~~~Yl~~-m~~~g~WGg~ieL~AlA~~~~v~I~V~~~~~~~~~i~i~p~~~~~~  192 (226)
                      .+|..+..||+.|++.|.+|++  +++++||.+ |...++|||++||+|+|++|+++|.|+..++....+.....+....
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            4799999999999999999996  479999985 8999999999999999999999999998765543332222223456


Q ss_pred             CeEEEEeCCCCcceeeecCCC
Q 027257          193 RELWLSFWSEVHYNSLYATGD  213 (226)
Q Consensus       193 ~~I~L~y~~~~HYdsl~~~~~  213 (226)
                      ++|+|+| .++|||.||+.+.
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~~  227 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAADK  227 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECCC
T ss_pred             CEEEEEe-CCCCcccCccCCC
Confidence            7899999 5679999999763