BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027258
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
pdb|1IYB|B Chain B, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease
Nw
Length = 208
Score = 281 bits (720), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 129/204 (63%), Positives = 150/204 (73%)
Query: 23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVF 82
+QDFDFFYFVQQWPGSYCDTKQSCCYPK+GKPA+DFGIHGLWP DGSYPSNCD +S +
Sbjct: 5 AQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPY 64
Query: 83 EKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXX 142
++SQ+SDLIS ++QNWPTL+CPS G+ FW+HEW KHGTCAE+ DQ YF
Sbjct: 65 DQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQ 124
Query: 143 XXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTS 202
GI PD GFY L SI AI+ A G+ PGIECNVD NSQLYQIY+CVD S
Sbjct: 125 INLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVDGS 184
Query: 203 ASEFIQCPKQPRKKCASTVQFPRF 226
S I+CP PR KC S+++FP F
Sbjct: 185 GSNLIECPIFPRGKCGSSIEFPTF 208
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le
Length = 208
Score = 263 bits (672), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 124/205 (60%), Positives = 148/205 (72%), Gaps = 1/205 (0%)
Query: 23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVF 82
S+DFDFFYFVQQWPGSYCDTKQSCCYP +GKPAADFGIHGLWP DG+YPSNCDP+S +
Sbjct: 4 SKDFDFFYFVQQWPGSYCDTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSPY 63
Query: 83 EKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESEL-DQREYFXXXXXXXX 141
++SQISDLIS ++QNWPTL+CPS G+ FW+HEW KHGTCAES L +Q YF
Sbjct: 64 DQSQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKN 123
Query: 142 XXXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDT 201
I PD Y+L +I AIK A G+TP I+CNVD NSQLYQ+Y+CVD
Sbjct: 124 QIDLLSILQGADIHPDGESYDLVNIRNAIKSAIGYTPWIQCNVDQSGNSQLYQVYICVDG 183
Query: 202 SASEFIQCPKQPRKKCASTVQFPRF 226
S S I+CP P KC ++++FP F
Sbjct: 184 SGSSLIECPIFPGGKCGTSIEFPTF 208
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp
pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp
pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump
Length = 217
Score = 236 bits (603), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 110/206 (53%), Positives = 143/206 (69%), Gaps = 4/206 (1%)
Query: 23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVF 82
+QDFDFFYFVQQWP SYCDT++SCCYP +GKP DF IHGLWP Y++G +P NCD +S
Sbjct: 5 AQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSL 64
Query: 83 EKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXX 142
++S+ISDLIS + +NWP+L+CPS+DG +FW+HEW+KHGTC S L +R YF
Sbjct: 65 DESEISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTC--SALGERAYFQAALDFRKK 122
Query: 143 XXXXXXXXXXGIKPDDG-FYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDT 201
I P +G Y LESI AI+E G +P IECNVD + N Q+YQ+Y+CVD
Sbjct: 123 SNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDK 182
Query: 202 SASEFIQCPKQPR-KKCASTVQFPRF 226
+A++FI CP P + C S ++FP F
Sbjct: 183 TATDFIDCPIFPHGRGCGSKIEFPPF 208
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex
With 5'-Gmp
Length = 191
Score = 111 bits (278), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 93/188 (49%), Gaps = 7/188 (3%)
Query: 25 DFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEK 84
+FD F+FVQQWP + C ++S P SG F IHGLWP+ + G+ +NC P S F+
Sbjct: 1 EFDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDI 56
Query: 85 SQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXXXX 144
++IS L S L WPT+ +N +FW+HEW KHGTC+ES +Q YF
Sbjct: 57 TKISHLQSQLNTLWPTVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYD 114
Query: 145 XXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHN-SQLYQIYMCVDTSA 203
P+ ++I +K G PG+ C DP+ S L ++ C
Sbjct: 115 IIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDG 174
Query: 204 SEFIQCPK 211
S I C +
Sbjct: 175 STLIDCTR 182
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd
pdb|1UCA|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 2'-Ump
pdb|1UCC|A Chain A, Crystal Structure Of The Ribonuclease Mc1 From Bitter
Gourd Seeds Complexed With 3'-Ump.
pdb|1UCD|A Chain A, Crystal Structure Of Ribonuclease Mc1 From Bitter Gourd
Seeds Complexed With 5'-Ump
Length = 190
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKS 85
FD F+FVQQWP + C ++S P SG F IHGLWP+ + G+ +NC P S F+ +
Sbjct: 1 FDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 56
Query: 86 QISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXXXXX 145
+IS L S L WP + +N +FW+HEW KHGTC+ES +Q YF
Sbjct: 57 KISHLQSQLNTLWPNVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 114
Query: 146 XXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHN-SQLYQIYMCVDTSAS 204
P+ ++I +K G PG+ C DP+ S L Q+ C S
Sbjct: 115 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 174
Query: 205 EFIQCPK 211
I C +
Sbjct: 175 TLIDCTR 181
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
pdb|1UCG|B Chain B, Crystal Structure Of Ribonuclease Mc1 N71t Mutant
Length = 190
Score = 110 bits (275), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 66/187 (35%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKS 85
D F+FVQQWP + C ++S P SG F IHGLWP+ + G+ +NC P S F+ +
Sbjct: 1 MDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 56
Query: 86 QISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXXXXX 145
+IS L S L WPT+ +N +FW+HEW KHGTC+ES +Q YF
Sbjct: 57 KISHLQSQLNTLWPTVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 114
Query: 146 XXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHN-SQLYQIYMCVDTSAS 204
P+ ++I +K G PG+ C DP+ S L Q+ C S
Sbjct: 115 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGS 174
Query: 205 EFIQCPK 211
I C +
Sbjct: 175 TLIDCTR 181
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex
With 5'-Gmp
Length = 190
Score = 107 bits (268), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 91/187 (48%), Gaps = 7/187 (3%)
Query: 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKS 85
D F+FVQQWP + C ++S P SG F IHGLWP+ + G+ +NC P S F+ +
Sbjct: 1 MDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDIT 56
Query: 86 QISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXXXXX 145
+IS L S L WP++ +N +FW+HEW KHGTC+ES +Q YF
Sbjct: 57 KISHLQSQLNTLWPSVLRANNQ--QFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDI 114
Query: 146 XXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHN-SQLYQIYMCVDTSAS 204
P+ ++I +K G PG+ C DP+ S L ++ C S
Sbjct: 115 IGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDGS 174
Query: 205 EFIQCPK 211
I C +
Sbjct: 175 TLIDCTR 181
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex
With 5'-Ump
Length = 197
Score = 107 bits (266), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 91/188 (48%), Gaps = 7/188 (3%)
Query: 25 DFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEK 84
+FD F+FVQQWP + C ++S P SG F IHGLWP+ + G+ +NC P S F+
Sbjct: 7 EFDSFWFVQQWPPAVCSFQKSGSCPGSG--LRTFTIHGLWPQ-QSGTSLTNC-PGSPFDI 62
Query: 85 SQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFXXXXXXXXXXX 144
++IS L S L WP + +N +FW+HEW KHGTC+ES +Q F
Sbjct: 63 TKISHLQSQLNTLWPNVLRANNQ--QFWSHEWTKHGTCSESTFNQAAAFKLAVDMRNNYD 120
Query: 145 XXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHN-SQLYQIYMCVDTSA 203
P+ ++I +K G PG+ C DP+ S L ++ C
Sbjct: 121 IIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVEVVACFAQDG 180
Query: 204 SEFIQCPK 211
S I C +
Sbjct: 181 STLIDCTR 188
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium
pdb|1JY5|B Chain B, Rnase-Related Protein From Calystegia Sepium
Length = 212
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/211 (30%), Positives = 103/211 (48%), Gaps = 18/211 (8%)
Query: 24 QDFDFFYFVQQWPGSYC-DTKQSCCYPKSGKPAAD--FGIHGLWPEYKDGSYPSNCDPDS 80
++FD+F W G+ C K SC + + F I GLWP+Y DG++PS C+ +
Sbjct: 3 KEFDYFTLALTWSGTECLSVKDSCPTNACSRSEVETGFTIKGLWPDYDDGTWPSCCE-GA 61
Query: 81 VFEKSQISDLISDLRQNWPTLSCPSNDGTKFW-----THEWVKHGTCAESEL-DQREYFX 134
+++++IS L +DL + WP+ SCPS+ + +EW KHGTC+ L +Q EYF
Sbjct: 62 KYDQNEISILSNDLSKYWPSYSCPSSSACGSFDASDLAYEWAKHGTCSSPVLGNQYEYFS 121
Query: 135 XXXXXXXXXXXXXXXXXXGIKPDD-GFYELESIIAAIKEATGFTPGIECNVDPEHNSQLY 193
G P + Y++E I++AI+ A TP ++C D +
Sbjct: 122 TTLMLYFKYNISEILSESGYLPSNTAEYKVEGIMSAIQSALRVTPVVKCKSD-----AVE 176
Query: 194 QIYMCVDTSASEFIQCPKQPRKKCASTVQFP 224
Q+ +C D + + +CP C S V P
Sbjct: 177 QVQICFDKTL-QLQECPST-ASTCPSLVSLP 205
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2
Length = 238
Score = 86.3 bits (212), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/194 (27%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVF 82
+ ++ VQ WP + C+ Q+ C P + IHGLWP+ +G C+ F
Sbjct: 7 NHEWKKLIMVQHWPETVCEKIQNDCR----DPPDYWTIHGLWPDKSEG-----CNRSWPF 57
Query: 83 EKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELD----QREYFXXXXX 138
+I DL+ ++R WP + + ++FW HEW KHGTCA +++D Q++YF
Sbjct: 58 NLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCA-AQVDALNSQKKYFGRSLE 116
Query: 139 XXXXXXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLY---QI 195
GIKP +Y++ A+ G P I+C + P + ++ QI
Sbjct: 117 LYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQC-LPPSQDEEVQTIGQI 175
Query: 196 YMCVDTSASEFIQC 209
+C+ + C
Sbjct: 176 ELCLTKQDQQLQNC 189
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal
That Trichomaglin Is A Novel S-Like Ribonuclease
Length = 209
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/188 (29%), Positives = 81/188 (43%), Gaps = 17/188 (9%)
Query: 24 QDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAAD----FGIHGLWPEYKDGSYPSNCDPD 79
++FD+F QW G+ C + +CC P +G AD F IHGL PEY G PS C
Sbjct: 3 REFDYFILALQWAGTSCRSGGACC-PYNGCCKADSPTQFTIHGLRPEYSGGERPSCCTGG 61
Query: 80 SVFEKSQISDLISDLRQNWPTLSCP-----SNDGTKFWTHEWVKHGTCAESELDQR-EYF 133
S F+ +I L + WPT C +N W ++ KHGTCA + YF
Sbjct: 62 S-FDPDEIMPFFGKLVEYWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYF 120
Query: 134 XXXXXXXXXXXXXXXXXXXGIKPDDG-FYELESIIAAIKEATGFTPGIECNVDPEHNSQL 192
GI + Y+L+ I+ A++ A G P + C+ +
Sbjct: 121 KKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVAVESAVGARPKLRCD----EEGLV 176
Query: 193 YQIYMCVD 200
++ +C D
Sbjct: 177 QKLSLCFD 184
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase
Length = 200
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 9/188 (4%)
Query: 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKS 85
+D+F F QQ+ + C++ ++ C P F +HGLWP G PS C ++ ++
Sbjct: 1 YDYFQFTQQYQLAVCNSNRTLC---KDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKRE 57
Query: 86 QISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYF---XXXXXXXXX 142
++ L L WP + + + FW EW+KHG+C +D ++
Sbjct: 58 KL--LEHQLEIIWPNVFDRTKNNL-FWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKK 114
Query: 143 XXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTS 202
I+PD L I AI+ ++L +I +C D S
Sbjct: 115 QNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQKKGTTTELVEITLCSDKS 174
Query: 203 ASEFIQCP 210
FI CP
Sbjct: 175 GEHFIDCP 182
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
pdb|1IOO|B Chain B, Crystal Structure Of Nicotiana Alata Gemetophytic
Self-incompatibility Associated Sf11-rnase
Length = 196
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 15/206 (7%)
Query: 25 DFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAA--DFGIHGLWPEYKDGSYPSNCDPDSVF 82
DF++ V WP S+C Y + A +F IHGLWP+ + NC P +
Sbjct: 1 DFEYLQLVLTWPASFC-------YANHCERIAPNNFTIHGLWPD-NVKTRLHNCKPKPTY 52
Query: 83 EKSQISDLISDLRQNWPTLSCPSNDGTK---FWTHEWVKHGTCAESELDQREYFXXXXXX 139
+++DL ++W L + G W ++++KHG+C + +Q YF
Sbjct: 53 SYF-TGKMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRL 111
Query: 140 XXXXXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCV 199
I P Y + I AIK + P I+C + +LY+I +C
Sbjct: 112 KDKFDLLRTLQTHRIIPGSS-YTFQDIFDAIKTVSQENPDIKCAEVTKGTPELYEIGICF 170
Query: 200 DTSASEFIQCPKQPRKKCASTVQFPR 225
+A +CP+ + V F R
Sbjct: 171 TPNADSMFRCPQSDTCDKTAKVLFRR 196
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase
Length = 247
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/202 (27%), Positives = 85/202 (42%), Gaps = 31/202 (15%)
Query: 48 YPKSGKPAADFGIHGLWPEYKDGSYPSNCDPD-------SVFEKSQISDLISDLRQNWPT 100
Y S P+ + IHGLWP+ DG+Y CD S+ E ++L+S +++ WP
Sbjct: 38 YDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPD 97
Query: 101 LSCPSNDGTKFWTHEWVKHGTCAES-----------ELDQREYFXXXXXXXXXXXXXXXX 149
D FW HEW KHGTC + + + ++F
Sbjct: 98 YEGADED-ESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTAL 156
Query: 150 XXXGIKP-DDGFYEL---ESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSA-- 203
GI P +D Y+L E +AAI + G+ P + C + SQLY Y V SA
Sbjct: 157 SDAGITPSEDATYKLSDIEDALAAIHD--GYPPYVGC--EDGALSQLY-YYFNVKGSAIG 211
Query: 204 SEFIQCPKQPRKKCA-STVQFP 224
++ + C S +++P
Sbjct: 212 GTYVASERLEDSNCKDSGIKYP 233
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases
As Antitumorigenic Agents
Length = 237
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 30/179 (16%)
Query: 48 YPKSGKPAADFGIHGLWPEYKDGSYPSNCDPD-------SVFEKSQISDLISDLRQNWPT 100
Y S P+ + IHGLWP+ DG+Y CD S+ E ++L+S +++ WP
Sbjct: 38 YDPSDGPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKEYWPD 97
Query: 101 LSCPSNDGTKFWTHEWVKHGTCAES-----------ELDQREYFXXXXXXXXXXXXXXXX 149
D FW HEW KHGTC + + + ++F
Sbjct: 98 YEGADED-ESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTAL 156
Query: 150 XXXGIKP-DDGFYEL---ESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSAS 204
GI P +D Y+L E +AAI + G+ P + C + L Q+Y + S
Sbjct: 157 SDAGITPSEDATYKLSDIEDALAAIHD--GYPPYVGC-----EDGALSQLYYYFNVKGS 208
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus
Niveus At 2.0 A Resolution
Length = 222
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 80/224 (35%), Gaps = 36/224 (16%)
Query: 18 SILCVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCD 77
S C S ++ QW Y P F +HGLWP+ G+Y +
Sbjct: 16 SDTCCSPEYGLVVLNMQWAPGY-------------GPDNAFTLHGLWPDKCSGAYAPSGG 62
Query: 78 PDSVFEKSQISDLI----SDLRQNWPTLSCPSNDGTK--FWTHEWVKHGTCA-------- 123
DS S I+ +I S L + T PSN G FW+HEW KHGTC
Sbjct: 63 CDSNRASSSIASVIKSKDSSLYNSMLTY-WPSNQGNNNVFWSHEWSKHGTCVSTYDPDCY 121
Query: 124 ---ESELDQREYFXXXXXXXXXXXXXXXXXXXGIKPDDGFYELESIIAAIKEATGFTPGI 180
E D +YF GI P G Y + +AI+ G I
Sbjct: 122 DNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP-GGTYTATEMQSAIESYFGAKAKI 180
Query: 181 ECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFP 224
+C+ + LY DT ++ C+ V++P
Sbjct: 181 DCSSGTLSDVALYFYVRGRDT----YVITDALSTGSCSGDVEYP 220
>pdb|3GAF|A Chain A, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|B Chain B, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|C Chain C, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|D Chain D, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|E Chain E, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|F Chain F, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|G Chain G, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
pdb|3GAF|H Chain H, 2.2a Crystal Structure Of 7-Alpha-Hydroxysteroid
Dehydrogenase From Brucella Melitensis
Length = 256
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 164 ESIIAAIKEATGFTPGIECNV-DPEHNSQLYQIYM 197
E++ AAI++A G G+ECNV D +H + + +
Sbjct: 50 EAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAAL 84
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.454
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,747,094
Number of Sequences: 62578
Number of extensions: 265509
Number of successful extensions: 412
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 20
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)