Query 027258
Match_columns 226
No_of_seqs 136 out of 1215
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 07:15:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027258.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027258hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1642 Ribonuclease, T2 famil 100.0 2.1E-61 4.6E-66 401.0 19.3 202 23-226 29-240 (263)
2 cd01061 RNase_T2_euk Ribonucle 100.0 4.2E-58 9.2E-63 379.8 20.0 193 26-223 1-195 (195)
3 cd00374 RNase_T2 Ribonuclease 100.0 3.2E-56 6.9E-61 367.9 19.3 193 26-223 1-195 (195)
4 PF00445 Ribonuclease_T2: Ribo 100.0 3.4E-56 7.3E-61 366.6 12.5 181 26-211 1-189 (189)
5 cd01062 RNase_T2_prok Ribonucl 100.0 8.6E-49 1.9E-53 321.5 15.4 171 26-219 1-179 (184)
6 PRK10095 ribonuclease I; Provi 100.0 1.2E-41 2.6E-46 291.5 17.3 189 22-225 30-265 (268)
7 COG3719 Rna Ribonuclease I [Tr 100.0 7.1E-41 1.5E-45 277.9 12.2 174 26-221 53-242 (249)
8 PF01328 Peroxidase_2: Peroxid 76.7 2.3 4.9E-05 37.9 2.8 35 145-179 52-87 (317)
9 PF08255 Leader_Trp: Trp-opero 63.5 4.4 9.6E-05 18.9 0.9 10 56-65 3-12 (14)
10 PF10281 Ish1: Putative stress 57.3 21 0.00045 21.1 3.5 30 144-173 8-37 (38)
11 cd03171 SORL_Dfx_classI Supero 49.3 6.2 0.00013 27.7 0.2 9 56-64 69-77 (78)
12 cd00524 SORL Superoxide reduct 49.2 6.4 0.00014 27.9 0.3 9 56-64 77-85 (86)
13 PF07172 GRP: Glycine rich pro 46.7 15 0.00032 26.8 1.9 23 1-23 1-23 (95)
14 cd03172 SORL_classII Superoxid 43.8 8.4 0.00018 28.5 0.2 10 57-66 93-102 (104)
15 TIGR00332 neela_ferrous desulf 43.6 8.1 0.00018 28.8 0.1 11 56-66 90-100 (107)
16 PRK10081 entericidin B membran 41.0 23 0.00051 22.5 1.9 19 1-19 1-19 (48)
17 TIGR03853 matur_matur probable 39.8 59 0.0013 22.8 3.9 36 144-184 6-42 (77)
18 PF00446 GnRH: Gonadotropin-re 38.5 13 0.00027 15.8 0.3 7 111-117 2-8 (10)
19 COG5510 Predicted small secret 38.5 29 0.00064 21.5 2.0 19 1-19 1-19 (44)
20 PF01880 Desulfoferrodox: Desu 37.5 8.4 0.00018 28.1 -0.6 8 58-65 87-94 (96)
21 PF10678 DUF2492: Protein of u 35.8 68 0.0015 22.6 3.7 37 143-184 7-44 (78)
22 COG2033 Desulfoferrodoxin [Ene 35.7 15 0.00034 27.9 0.5 11 56-66 111-121 (126)
23 PF08766 DEK_C: DEK C terminal 35.3 46 0.001 21.2 2.7 28 145-176 9-36 (54)
24 TIGR00320 dfx_rbo desulfoferro 34.8 14 0.0003 28.3 0.2 10 56-65 114-123 (125)
25 PF08368 FAST_2: FAST kinase-l 34.2 1.5E+02 0.0032 21.1 5.5 41 162-203 49-89 (93)
26 TIGR03595 Obg_CgtA_exten Obg f 32.7 57 0.0012 22.1 3.0 31 128-162 31-61 (69)
27 PF08100 Dimerisation: Dimeris 30.7 67 0.0015 20.5 2.9 32 136-171 2-33 (51)
28 PF09269 DUF1967: Domain of un 28.9 82 0.0018 21.3 3.2 31 128-162 31-61 (69)
29 PF06217 GAGA_bind: GAGA bindi 27.1 29 0.00063 30.7 0.9 30 87-121 265-294 (301)
30 PF13041 PPR_2: PPR repeat fam 26.6 73 0.0016 19.3 2.5 31 138-170 18-48 (50)
31 PF09680 Tiny_TM_bacill: Prote 20.1 1.1E+02 0.0025 16.4 2.0 13 6-18 6-18 (24)
No 1
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification]
Probab=100.00 E-value=2.1e-61 Score=401.00 Aligned_cols=202 Identities=59% Similarity=1.154 Sum_probs=183.3
Q ss_pred CCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCcc
Q 027258 23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLS 102 (226)
Q Consensus 23 ~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~ 102 (226)
..+||||+|+++||.++|...+.||.+..|.+. .||||||||++.+|+||++|+.+.+||.++|++|++.|+++||++.
T Consensus 29 ~~~fd~f~fvqqWP~~~Cd~~~~~C~~~~G~~a-~ftIHGLWP~~~~G~~P~~Cn~s~~Fd~~~isdl~~~L~~~Wp~L~ 107 (263)
T KOG1642|consen 29 EEDFDFFYFVQQWPGAYCDSQRTCCYPPSGKPA-DFTIHGLWPDYNHGSWPQNCNRSSQFDDSKISDLEDSLEKEWPDLY 107 (263)
T ss_pred cCCCCEEEEEEecCCccccCCccccCCCCCCcc-ceEEeeeccCCCCCCCcccCCCcccCChHHccchhhhHHhhccccc
Confidence 378999999999999999998889988776554 9999999999999999999998889999999999999999999999
Q ss_pred CCCCCC--ccccccccceeeeccCCcC---ChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCC
Q 027258 103 CPSNDG--TKFWTHEWVKHGTCAESEL---DQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFT 177 (226)
Q Consensus 103 ~~~~~~--~~fw~hEW~KHGtCs~~~~---~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~ 177 (226)
+++.++ ++||+|||+|||||+.+++ +|.+||.++++|++++|+..+|.++||.|+++.|++++|++||++++|..
T Consensus 108 ~~s~n~g~~~fW~HEweKHGTCa~sv~~~~dq~~YF~~~L~l~~k~~l~~~L~~~gI~p~~~~y~l~~I~nAi~~~~G~~ 187 (263)
T KOG1642|consen 108 CPSPNGGHESFWKHEWEKHGTCASSVFPLCDQHKYFETTLKLKQKLDLLSILKKAGIKPDDNFYSLADIKNAIKEAIGKT 187 (263)
T ss_pred cCCCCCccchhhhhhhhccCchhhhhhhhhhHHHHHHHHHHHHHHHhHHHHHHHcCCCCCCCceeHHHHHHHHHHHhCCC
Confidence 887433 8999999999999999887 99999999999999999999999999999889999999999999999999
Q ss_pred ceEEeeeCCCCC-ccEEEEEEEEeCCCCceecCCC----CCCCCCCCCeeecCC
Q 027258 178 PGIECNVDPEHN-SQLYQIYMCVDTSASEFIQCPK----QPRKKCASTVQFPRF 226 (226)
Q Consensus 178 p~l~C~~~~~~~-~~L~Ei~iC~d~~~~~~~~Cp~----~~~~~C~~~i~~p~f 226 (226)
|.+.|.++.+++ .+|.|||+||.|+. ..++|.. .+.++|+..+.||.|
T Consensus 188 p~I~C~rd~~~nv~~l~qI~lCl~kd~-~~~d~~~~~~~~P~g~~~~~~~~ps~ 240 (263)
T KOG1642|consen 188 PGIECLRDSKHNVSQLGQIRLCLLKDF-SPRDCIECPTEFPRGSCPTFIQFPSF 240 (263)
T ss_pred CceEeccCcccCceEeeeEEEEeecCc-ccccccCCCCcccCCcccccccCCCC
Confidence 999999988777 78999999998773 4555543 345789999999875
No 2
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
Probab=100.00 E-value=4.2e-58 Score=379.85 Aligned_cols=193 Identities=46% Similarity=1.003 Sum_probs=172.2
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCccCCC
Q 027258 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPS 105 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~~~~ 105 (226)
||||+|+++|||+||.....+|.+ .+..+||||||||++.+|++|++|+.+.+|+..++.+++.+|+.+||++....
T Consensus 1 ~d~~~l~~~Wpps~C~~~~~~c~~---~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~L~~~Wp~l~~~~ 77 (195)
T cd01061 1 FDYLQLVLQWPDTYCSTGPCCCRP---PPPDSFTIHGLWPDNCSGTYPQFCDSSSNFDSILISDLLNELNKYWPDLTGPK 77 (195)
T ss_pred CCeEEEEEECCCCcccCCCCcCCC---CCcccCEEeccCCCCCCCCCCCCCCCcccCCcccchhhhHHHhccCCCCcCCC
Confidence 799999999999999887666643 34689999999999988899999987788999888899999999999996433
Q ss_pred CCCccccccccceeeeccCC-cCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceEEeee
Q 027258 106 NDGTKFWTHEWVKHGTCAES-ELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNV 184 (226)
Q Consensus 106 ~~~~~fw~hEW~KHGtCs~~-~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l~C~~ 184 (226)
++..||+|||+|||||+++ ..++.+||++|++|++++|+.++|+++||+|+++.|++++|++||++++|.+|.|+|.+
T Consensus 78 -~~~~fw~hEW~KHGTC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~~~~~~~~~i~~ai~~~~g~~~~l~C~~ 156 (195)
T cd01061 78 -NNQSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLLKILAKAGIVPSTQTYTLSDIQNAIKAATGVTPVIKCSK 156 (195)
T ss_pred -CcchHHHHHHhhCcEeCCCcccCHHHHHHHHHHHHHHCCHHHHHHHCCcCCCCcEEcHHHHHHHHHHHHCCCcEEEeCc
Confidence 4678999999999999985 46999999999999999999999999999996588999999999999999999999987
Q ss_pred CCCCCccEEEEEEEEeCCCCceecCCCCCCCCCC-CCeee
Q 027258 185 DPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCA-STVQF 223 (226)
Q Consensus 185 ~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~-~~i~~ 223 (226)
++ ++.+|.||+||+|+++.++++||.....+|+ +.|+|
T Consensus 157 ~~-~~~~L~Ev~iC~~k~~~~~~~C~~~~~~~C~~~~i~f 195 (195)
T cd01061 157 DP-GKGELNEIWICFDKKGGEFIDCPRPPKSTCPDDGIKF 195 (195)
T ss_pred CC-CCcEEEEEEEEEECCCCeEeeCCCCCCCCCCCCceEC
Confidence 64 4579999999999997689999987677899 67765
No 3
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen.
Probab=100.00 E-value=3.2e-56 Score=367.94 Aligned_cols=193 Identities=46% Similarity=0.928 Sum_probs=170.2
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCccCCC
Q 027258 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPS 105 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~~~~ 105 (226)
||||+||++|||+||.....+|.. .....+||||||||++.+|++|++|+.+..++...+.+|.++|+++||++..+.
T Consensus 1 ~d~~~l~l~W~p~~C~~~~~~~~~--~~~~~~ftiHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~l~~~w~~~~~~~ 78 (195)
T cd00374 1 FDYYVLVLQWPPTFCATGPCKCCG--TPPPDSFTIHGLWPDNCDGTYPQFCDSSSFFDKSKDSDLLDELNKYWPDLMPGK 78 (195)
T ss_pred CCeEEEEEeCcCCcccCCCCCCCC--CCchHHeeEccccCCCCCCCCCCCCCCCccccccccHHHHHHHHhhCcccCCCC
Confidence 799999999999999886544431 135689999999999988899999997777776777889999999999995322
Q ss_pred CCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCcccHHHHHHHHHHHhCCCceEEeee
Q 027258 106 NDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKP-DDGFYELESIIAAIKEATGFTPGIECNV 184 (226)
Q Consensus 106 ~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~al~~~~g~~p~l~C~~ 184 (226)
+.+||+|||+|||||+++..++.+||++|++|++++|+.++|+.+||+| +++.|+.++|++||++++|..|.|+|.+
T Consensus 79 --~~~fw~hEW~KHGTC~~~~~~~~~YF~~a~~l~~~~ni~~~L~~~~i~p~~~~~~~~~~i~~ai~~~~g~~~~l~C~~ 156 (195)
T cd00374 79 --DSSFWKHEWNKHGTCSGTLLDQDDYFRTALKLLDKLDLLSILAKAGIKPSDGSTYTLAFIQNAIKAATGATPSLKCTK 156 (195)
T ss_pred --CchHHHHHHhcCceecCCcCCHHHHHHHHHHHHHhCCHHHHHHHCCCcCCCCceecHHHHHHHHHHHHCCCcEEEecc
Confidence 6789999999999999877899999999999999999999999999999 6899999999999999999999999987
Q ss_pred CCCCCccEEEEEEEEeCCCCceecCCCCCCCCCC-CCeee
Q 027258 185 DPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCA-STVQF 223 (226)
Q Consensus 185 ~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~-~~i~~ 223 (226)
++ ++.+|.||+||+|+++.++++||....++|+ +.|+|
T Consensus 157 ~~-~~~~L~Ev~iC~~~~~~~~~~C~~~~~~~C~~~~i~~ 195 (195)
T cd00374 157 DP-GKGLLTEIWICFDKDALKFIDCPTPGKSTCPADGIKF 195 (195)
T ss_pred CC-CCcEEEEEEEEEECCCCeEEeCCCCCCCCCCCCcEEC
Confidence 65 5679999999999996689999987667899 67765
No 4
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3.1.27.1 from EC). Two histidines residues have been shown [, ] to be involved in the catalytic mechanism of RNase T2 and Rh. These residues and the region around them are highly conserved in a number of other RNAses that have been found to be evolutionary related to these fungal enzymes.; GO: 0003723 RNA binding, 0033897 ribonuclease T2 activity; PDB: 1IOO_A 3D3Z_A 1UCG_B 1UCC_A 1J1F_A 1V9H_A 1UCD_A 1J1G_A 1UCA_A 1BK7_A ....
Probab=100.00 E-value=3.4e-56 Score=366.60 Aligned_cols=181 Identities=43% Similarity=0.895 Sum_probs=157.2
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCC-CCcCCCCCCCCCcchhh---hHHHHhhccCCCc
Q 027258 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGS-YPSNCDPDSVFEKSQIS---DLISDLRQNWPTL 101 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~-~p~~C~~~~~~~~~~i~---~l~~~L~~~Wp~~ 101 (226)
||||+||++|||+||+.+..+|.+ .+..+||||||||++.+++ +|++|+....||..+++ ++..+|+.+||++
T Consensus 1 fD~~~l~~~W~p~~C~~~~~~C~~---~~~~~ftIHGLWP~~~~~~~~p~~C~~~~~~~~~~~~~~~~~~~~L~~~Wp~~ 77 (189)
T PF00445_consen 1 FDYYVLALQWPPSFCSTNSPQCKP---PPPNNFTIHGLWPSNCDGGTYPQNCNSSPNFDNSNLSNPPELKSELDKYWPDL 77 (189)
T ss_dssp -SEEEEEEEEHHHHTSSSSSCHSS---SSTSSEEEEEEEEETTTSSSCCCSSSTTTTTSGGGGGH-HGGHHHHHHHSTBS
T ss_pred CeEEEEEEEeCchhcCCCCCcCCC---CCCcceEEecccCCCCCCCCCcceecCccccccccchhhhHHhhhhhhhhhhh
Confidence 899999999999999865567763 4579999999999977666 99999877779988888 8999999999999
Q ss_pred cCCCCCCccccccccceeeeccCCc-CChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCcccHHHHHHHHHHHh-CCCc
Q 027258 102 SCPSNDGTKFWTHEWVKHGTCAESE-LDQREYFEAALKLKEKANLLQALKNAGIKP-DDGFYELESIIAAIKEAT-GFTP 178 (226)
Q Consensus 102 ~~~~~~~~~fw~hEW~KHGtCs~~~-~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~al~~~~-g~~p 178 (226)
..+.. ..||+|||+|||||++.. .++.+||++|++|++++|+.++|+++||+| +++.|++++|++||++++ |..|
T Consensus 78 ~~~~~--~~fw~hEW~KHGtC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~gI~p~~~~~~~~~~i~~al~~~~~~~~~ 155 (189)
T PF00445_consen 78 KNSNS--ESFWKHEWEKHGTCSGMDFIDQYDYFSTALKLYKKLNLPKILANAGIVPSNGKTYSLSDIRDALKQAFNGVRP 155 (189)
T ss_dssp SSSHH--HHHHHHHHHHTGGGGTTTSSSHHHHHHHHHHHHHHCHHHHHHHHTTHCSCSSEEEEHHHHHHHHHHHHTSSGE
T ss_pred ccchh--hhhHHhcceeeeEEcCCchhhHHHHHHHHHHHHHhccchHHHhhcccCCCccccccHHHHHHHHHHHcCCCce
Confidence 43211 599999999999999932 239999999999999999999999999999 678999999999999999 9999
Q ss_pred eEEeeeC-CCCCccEEEEEEEEeCCCCceecCCC
Q 027258 179 GIECNVD-PEHNSQLYQIYMCVDTSASEFIQCPK 211 (226)
Q Consensus 179 ~l~C~~~-~~~~~~L~Ei~iC~d~~~~~~~~Cp~ 211 (226)
.|+|.++ .+++.+|.||++|||+++.++||||.
T Consensus 156 ~l~C~~~~~~~~~~L~ei~iC~~~~~~~~idCp~ 189 (189)
T PF00445_consen 156 QLRCSRNQVNGEQYLTEIRICFDKDLFQFIDCPC 189 (189)
T ss_dssp EEEEECTETTSEEEEEEEEEEEETTSSSEE--S-
T ss_pred EEEEecCCCCCcEEEEEEEEEEeCCCCeEeCCcC
Confidence 9999987 67778999999999999878999984
No 5
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far. This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the prokaryotic RNase T2 family members.
Probab=100.00 E-value=8.6e-49 Score=321.48 Aligned_cols=171 Identities=29% Similarity=0.608 Sum_probs=141.9
Q ss_pred ccEEEEEeecccccccCCCC--ccC-CCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchh-hhHHHHhhccCCCc
Q 027258 26 FDFFYFVQQWPGSYCDTKQS--CCY-PKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQI-SDLISDLRQNWPTL 101 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~~~--~c~-~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i-~~l~~~L~~~Wp~~ 101 (226)
||||+||++|||+||+..+. +|. ... ....+||||||||++.++++|++|+.+. ...+ .+++++|..+||+
T Consensus 1 fd~~~lal~Wpps~C~~~~~~~~~~~~~~-~~~~~ftiHGLWP~~~~~~~p~~C~~~~---~~~~~~~~~~~l~~~~p~- 75 (184)
T cd01062 1 FDYYVLALSWQPGFCATQGDRPECATCGT-LDAYGFTLHGLWPQKPKGGWPEYCGVTS---EPPLSEETRSRLLDVMPA- 75 (184)
T ss_pred CceEEEEEeeCHHHhccCCcCCccccCCC-CCCCceEEecCCCCCCCCCCcCcCcCCc---CCCCCHHHHHHHHhhCCc-
Confidence 79999999999999977532 321 111 2468999999999998888999998542 1122 3567788999994
Q ss_pred cCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCc---
Q 027258 102 SCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTP--- 178 (226)
Q Consensus 102 ~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p--- 178 (226)
.+||+|||+|||||++ .++.+||++|++|++++|+.++|+..++.+ + |+.++|++||++++|..|
T Consensus 76 -------~~~w~hEW~KHGtC~~--~~~~~YF~~a~~l~~~~~~~~~l~~~~~~~-~--~~~~~i~~a~~~~~~~~~~~~ 143 (184)
T cd01062 76 -------SGLIRHEWRKHGTCSG--LDPDAYFAKARNLREALKIPPELRLLAGNI-G--VTASEIRQAFIKANPGLPPDA 143 (184)
T ss_pred -------hhHhHHHHhcCCcCCC--CCHHHHHHHHHHHHHHcCcchhhhhccccC-C--cCHHHHHHHHHHHCCCCCCce
Confidence 4699999999999998 899999999999999999999999876432 3 999999999999998766
Q ss_pred -eEEeeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCCCC
Q 027258 179 -GIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCAS 219 (226)
Q Consensus 179 -~l~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~ 219 (226)
.|+|.+ .+|.||+||||+++ ++++||....++|++
T Consensus 144 ~~~~C~~-----~~L~Ei~iC~~~~~-~~~~C~~~~~~~C~~ 179 (184)
T cd01062 144 VSVSCQG-----GLLTEVRICLDKDL-KFAACPTADRDNCPA 179 (184)
T ss_pred EEEEECC-----CeEEEEEEEeCccc-CcccCCccccCCCCC
Confidence 899964 58999999999995 799999876678984
No 6
>PRK10095 ribonuclease I; Provisional
Probab=100.00 E-value=1.2e-41 Score=291.48 Aligned_cols=189 Identities=19% Similarity=0.406 Sum_probs=139.3
Q ss_pred cCCCccEEEEEeecccccccCC-------CCccCCCC--CCCCCCceEeeeeCCCC---------CCCC-CcCCCCCC--
Q 027258 22 VSQDFDFFYFVQQWPGSYCDTK-------QSCCYPKS--GKPAADFGIHGLWPEYK---------DGSY-PSNCDPDS-- 80 (226)
Q Consensus 22 ~~~~fD~~~l~l~Wpp~~C~~~-------~~~c~~~~--~~~~~~ftIHGLWP~~~---------~~~~-p~~C~~~~-- 80 (226)
.+++||||+|||+|+|+||... +.+|.... .....+||||||||++. +.+| +.+|....
T Consensus 30 ~~g~fd~YvLALSWqP~fC~~~~~~~~~~~~eC~~~~~~~~~~~~f~LHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~p 109 (268)
T PRK10095 30 QYGDFDRYVLALSWQTGFCQSQHDRNRNEPDECRLQKETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPIP 109 (268)
T ss_pred cCCCcceEEEEEeeCHHHHhhhccccCCCchhhhccccCCCCCCceEEecCCCCCcccccccCccccccccccccccCCC
Confidence 4579999999999999999642 23675321 12457899999999872 1122 33343110
Q ss_pred -----------CCCcchh-hhHHHHhhccCCCccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHH--
Q 027258 81 -----------VFEKSQI-SDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLL-- 146 (226)
Q Consensus 81 -----------~~~~~~i-~~l~~~L~~~Wp~~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~-- 146 (226)
..+...+ .++...|..+||+.. ....||+|||.|||||++ +++.+||+++++|++++|+.
T Consensus 110 ~~p~~~~~~~C~~~~~~l~~~~~~~l~~~mP~~~----~~s~l~~heW~KHGtC~~--~~~~~YF~~al~L~~kvn~s~~ 183 (268)
T PRK10095 110 NLPEARASRKCSAPETGLSLETAAKLSEVMPGAG----GRSCLERYEYAKHGACFG--FDPDAYFGTMVRLNQEIKESEA 183 (268)
T ss_pred ccccccccccccCCCCCCCHHHHHHHHHhCCCCC----ccchhHHHHHHhCCeecC--CCHHHHHHHHHHHHHHhchhhh
Confidence 0112233 356788899999862 124699999999999998 99999999999999999964
Q ss_pred -HHHHhCCCCCCCCcccHHHHHHHHHHHhCCC----ceEEeeeCCCCCccEEEEEEEEeCC-------CCceecCCCCCC
Q 027258 147 -QALKNAGIKPDDGFYELESIIAAIKEATGFT----PGIECNVDPEHNSQLYQIYMCVDTS-------ASEFIQCPKQPR 214 (226)
Q Consensus 147 -~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~----p~l~C~~~~~~~~~L~Ei~iC~d~~-------~~~~~~Cp~~~~ 214 (226)
++|.++ ++++|+.++|++||++++|.. |.|+|.++. .+|.||+||++++ ...++.|+. .
T Consensus 184 ~~~L~~~----~Gk~~s~~~I~~Ai~~a~G~~~~~~~~L~C~~~~---~~L~EV~ICl~~~~~~~~l~~~~~~~~~~--~ 254 (268)
T PRK10095 184 GKFLADN----YGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGNP---AYLTEIQISLKADAINAPLSANSFLPQPH--P 254 (268)
T ss_pred hhhhhcC----CCcEEcHHHHHHHHHHHhCCCCCCcceEEeCCCC---cEEEEEEEEcccccccCCchhhhccCCCC--C
Confidence 457664 589999999999999999854 489997532 5899999999987 223456664 4
Q ss_pred CCCCCCeeecC
Q 027258 215 KKCASTVQFPR 225 (226)
Q Consensus 215 ~~C~~~i~~p~ 225 (226)
++|+..|++++
T Consensus 255 ~~C~~~~~i~~ 265 (268)
T PRK10095 255 GNCGKQFVIDK 265 (268)
T ss_pred CCCCCCeeeCC
Confidence 67999988875
No 7
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-41 Score=277.87 Aligned_cols=174 Identities=28% Similarity=0.589 Sum_probs=140.1
Q ss_pred ccEEEEEeecccccccCCC--CccCCCC-CCCCCCceEeeeeCCCCCC----CCCcCCCCCCCCCcchhh-hHHHHhhcc
Q 027258 26 FDFFYFVQQWPGSYCDTKQ--SCCYPKS-GKPAADFGIHGLWPEYKDG----SYPSNCDPDSVFEKSQIS-DLISDLRQN 97 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~~--~~c~~~~-~~~~~~ftIHGLWP~~~~~----~~p~~C~~~~~~~~~~i~-~l~~~L~~~ 97 (226)
||+|+|+|+|+|+||+++. ..|.-+. ....++||+|||||++.++ .+|.+|..+. ...+. .+.+.|...
T Consensus 53 ~d~YVLALSWsP~fC~sq~~~~e~~~Qc~~~~~~gftVHGLWPqn~~~~~~~~~pr~cr~~~---~~~lP~v~~~~l~~v 129 (249)
T COG3719 53 FDFYVLALSWSPGFCESQHDPDECRLQCETNRAFGFTVHGLWPQNENGRAVRDYPRFCRGRP---WPRLPEVIASQLLDV 129 (249)
T ss_pred cceEEEEEecChHHhhcCCCcchhHHhcccccccceEEeccCCCCCCCcccccChhhhcCCC---cccCCHHHHHHHhhc
Confidence 9999999999999998864 2222211 1357999999999998876 5999998522 23333 345678888
Q ss_pred CCCccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCC-
Q 027258 98 WPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGF- 176 (226)
Q Consensus 98 Wp~~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~- 176 (226)
+|+. .|-+|||+|||||++ ++|.+||.++++|+++++++..+.... ++++++..+|+.||.+++|.
T Consensus 130 mPg~--------~L~~heW~KHGtC~g--~s~~~YFa~~r~l~~~l~~p~~~~~~a---~~~~ls~~ei~~AF~~~n~~~ 196 (249)
T COG3719 130 MPGA--------GLERHEWRKHGTCSG--LSQEAYFATTRRLFEELKLPPVRKLLA---DGKTLSRDEIEQAFDKANGGL 196 (249)
T ss_pred CCch--------hhhhhhHHhcCccCC--CCHHHHHHHHHHHHHHhcCCccccccc---cccccCHHHHHHHHHHhCCCC
Confidence 8975 499999999999999 999999999999999999988665543 47899999999999999962
Q ss_pred ---CceEEeeeCCCCCccEEEEEEEEeCCCCceecC----CCCCCCCCCCCe
Q 027258 177 ---TPGIECNVDPEHNSQLYQIYMCVDTSASEFIQC----PKQPRKKCASTV 221 (226)
Q Consensus 177 ---~p~l~C~~~~~~~~~L~Ei~iC~d~~~~~~~~C----p~~~~~~C~~~i 221 (226)
.+.+.|.. .+|+||+||+|++. ++++| |......|+.++
T Consensus 197 ~~~~v~vsc~~-----~~LtEl~Icl~~~~-~~~ac~~~~~~~~~~~C~~~~ 242 (249)
T COG3719 197 KGDAVRVSCQG-----NYLTELRICLDKDL-QNAACLADLPQPDPGNCRKTF 242 (249)
T ss_pred CchheEEEeec-----cceeeEEEEEcccc-ccchhhccCCCCCcccccccc
Confidence 45788976 39999999999995 78999 766567898653
No 8
>PF01328 Peroxidase_2: Peroxidase, family 2; InterPro: IPR000028 Chloroperoxidase (CPO), also known as Heme haloperoxidase, is a ~250 residue heme-containing glycoprotein that is secreted by various fungi. Chloroperoxidase was first identified in Caldariomyces fumago where it catalyzes the hydrogen peroxide-dependent chlorination of cyclopentanedione during the biosynthesis of the antibiotic caldarioymcin. Additionally, heme haloperoxidase catalyzes the iodination and bromination of a wide range of substrates. Besides performing H2O2-dependent halogenation reactions, the enzyme catalyzes dehydrogenation reactions. Chloroperoxidase also functions as a catalase, facilitating the decomposition of hydrogen peroxide to oxygen and water. Furthermore, chloroperoxidase catalyzes P450-like oxygen insertion reactions. The capability of chloroperoxidase to perform these diverse reactions makes it one of the most versatile of all known heme proteins [, ]. Despite functional similarities with other heme enzymes, chloroperoxidase folds into a novel tertiary structure dominated by eight helical segments []. Structurally, chloroperoxidase is unique, but it shares features with both peroxidases and P450 enzymes. As in cytochrome P450 enzymes, the proximal heme ligand is a cysteine, but similar to peroxidases, the distal side of the heme is polar. However, unlike other peroxidases, the normally conserved distal arginine is lacking and the catalytic acid base is a glutamic acid and not a histidine [].; GO: 0004601 peroxidase activity; PDB: 2J5M_A 2J19_A 2CIW_A 2CJ0_A 2CIV_A 2CPO_A 1CPO_A 2CJ2_A 2J18_A 2CIZ_A ....
Probab=76.67 E-value=2.3 Score=37.93 Aligned_cols=35 Identities=29% Similarity=0.467 Sum_probs=26.8
Q ss_pred HHHHHHhCCCCC-CCCcccHHHHHHHHHHHhCCCce
Q 027258 145 LLQALKNAGIKP-DDGFYELESIIAAIKEATGFTPG 179 (226)
Q Consensus 145 i~~~L~~~gI~P-~~~~~~~~~i~~al~~~~g~~p~ 179 (226)
-.++|+++|+.| +|+.++..++.+|+.+.++..+.
T Consensus 52 gLNtLANHGyLPrnG~~It~~~l~~al~~~~n~~~~ 87 (317)
T PF01328_consen 52 GLNTLANHGYLPRNGRNITVEQLINALQEGYNLSPD 87 (317)
T ss_dssp HHHHHHHTTSS-TT-EEE-HHHHHHHHHHHH-B-HH
T ss_pred cHHHHHhcCccCCCCccccHHHHHHHHHHHhCCChH
Confidence 457899999999 89999999999999999987665
No 9
>PF08255 Leader_Trp: Trp-operon Leader Peptide; InterPro: IPR013205 The tryptophan operon regulatory region of Citrobacter freundii (leader transcript) encodes a 14-residue peptide containing characteristic tandem tryptophan residues. It is about 10 nucleotides shorter than those of Escherichia coli and Salmonella typhimurium [].
Probab=63.48 E-value=4.4 Score=18.94 Aligned_cols=10 Identities=50% Similarity=1.258 Sum_probs=8.1
Q ss_pred CCceEeeeeC
Q 027258 56 ADFGIHGLWP 65 (226)
Q Consensus 56 ~~ftIHGLWP 65 (226)
..|.+||.|-
T Consensus 3 a~~~L~~WWr 12 (14)
T PF08255_consen 3 ATFSLHGWWR 12 (14)
T ss_pred eEEEEeeEEE
Confidence 4689999994
No 10
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=57.29 E-value=21 Score=21.14 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=22.6
Q ss_pred CHHHHHHhCCCCCCCCcccHHHHHHHHHHH
Q 027258 144 NLLQALKNAGIKPDDGFYELESIIAAIKEA 173 (226)
Q Consensus 144 ni~~~L~~~gI~P~~~~~~~~~i~~al~~~ 173 (226)
++.+.|..+||.......+++++.+.+++.
T Consensus 8 ~L~~wL~~~gi~~~~~~~~rd~Ll~~~k~~ 37 (38)
T PF10281_consen 8 DLKSWLKSHGIPVPKSAKTRDELLKLAKKN 37 (38)
T ss_pred HHHHHHHHcCCCCCCCCCCHHHHHHHHHHh
Confidence 456789999999833335899999888764
No 11
>cd03171 SORL_Dfx_classI Superoxide reductase-like (SORL) domain, class I; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=49.30 E-value=6.2 Score=27.71 Aligned_cols=9 Identities=56% Similarity=1.213 Sum_probs=6.8
Q ss_pred CCceEeeee
Q 027258 56 ADFGIHGLW 64 (226)
Q Consensus 56 ~~ftIHGLW 64 (226)
..=++||||
T Consensus 69 ~yCNlHGLW 77 (78)
T cd03171 69 AYCNLHGLW 77 (78)
T ss_pred EEeccccee
Confidence 344789999
No 12
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=49.19 E-value=6.4 Score=27.89 Aligned_cols=9 Identities=44% Similarity=1.165 Sum_probs=6.8
Q ss_pred CCceEeeee
Q 027258 56 ADFGIHGLW 64 (226)
Q Consensus 56 ~~ftIHGLW 64 (226)
..=++||||
T Consensus 77 ~yCN~HGlw 85 (86)
T cd00524 77 SYCNLHGLW 85 (86)
T ss_pred EEcccceee
Confidence 344689999
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=46.69 E-value=15 Score=26.80 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=9.6
Q ss_pred CCcchhhHHHHHHHHHHHhcccC
Q 027258 1 MKLQFSIFTKLLIIQYLSILCVS 23 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ 23 (226)
|.-|..+|+-++++++|+++|.+
T Consensus 1 MaSK~~llL~l~LA~lLlisSev 23 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEV 23 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhh
Confidence 33333333333444445555543
No 14
>cd03172 SORL_classII Superoxide reductase-like (SORL) domain, class II; SORL-domains are present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers.
Probab=43.76 E-value=8.4 Score=28.49 Aligned_cols=10 Identities=50% Similarity=1.042 Sum_probs=7.4
Q ss_pred CceEeeeeCC
Q 027258 57 DFGIHGLWPE 66 (226)
Q Consensus 57 ~ftIHGLWP~ 66 (226)
.=++||||=+
T Consensus 93 yCNlHGLW~~ 102 (104)
T cd03172 93 YCNIHGLWES 102 (104)
T ss_pred EcccceeEEe
Confidence 4568999953
No 15
>TIGR00332 neela_ferrous desulfoferrodoxin ferrous iron-binding domain. The N-terminal domain of desulfoferrodoxin is described in a separate model, dfx_rbo (TIGR00320).
Probab=43.59 E-value=8.1 Score=28.80 Aligned_cols=11 Identities=45% Similarity=0.839 Sum_probs=7.8
Q ss_pred CCceEeeeeCC
Q 027258 56 ADFGIHGLWPE 66 (226)
Q Consensus 56 ~~ftIHGLWP~ 66 (226)
..=++||||=+
T Consensus 90 ~YCNlHGLW~~ 100 (107)
T TIGR00332 90 MYCNIHGLWEY 100 (107)
T ss_pred EEecccccEEe
Confidence 34468999954
No 16
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=41.00 E-value=23 Score=22.49 Aligned_cols=19 Identities=5% Similarity=-0.109 Sum_probs=11.2
Q ss_pred CCcchhhHHHHHHHHHHHh
Q 027258 1 MKLQFSIFTKLLIIQYLSI 19 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (226)
||+|++.++..+++..+.+
T Consensus 1 MmKk~i~~i~~~l~~~~~l 19 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVL 19 (48)
T ss_pred ChHHHHHHHHHHHHHHHHH
Confidence 7888766664444444433
No 17
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=39.81 E-value=59 Score=22.81 Aligned_cols=36 Identities=25% Similarity=0.369 Sum_probs=27.5
Q ss_pred CHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceE-Eeee
Q 027258 144 NLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGI-ECNV 184 (226)
Q Consensus 144 ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l-~C~~ 184 (226)
++..++-.. +++|+.+++++||.+.||...-+ .|+.
T Consensus 6 eVL~mml~~-----~~~~t~~~L~~~i~~~FG~~arFhTCSa 42 (77)
T TIGR03853 6 EVLNLMLAS-----GEPYTRESLKAAIEQKFGEDARFHTCSA 42 (77)
T ss_pred HHHHHHHHc-----CCCcCHHHHHHHHHHHhCCCceEeeccc
Confidence 455655554 57899999999999999976654 6865
No 18
>PF00446 GnRH: Gonadotropin-releasing hormone; InterPro: IPR002012 The gonadotropin-releasing hormones (GnRH) (gonadoliberin) [] are a family of peptides that play a pivotal role in reproduction. The main function of GnRH is to act on the pituitary to stimulate the synthesis and secretion of luteinizing and follicle-stimulating hormones, but GnRH also acts on the brain, retina, sympathetic nervous system, gonads and placenta in certain species. There seems to be at least three forms of GnRH. The second form is expressed in midbrain and seems to be widespread. The third form has only been found so far in fish. GnRH is a C-terminal amidated decapeptide processed from a larger precursor protein. Four of the ten residues are perfectly conserved in all species where GnRH has been sequenced.; GO: 0005179 hormone activity, 0007275 multicellular organismal development, 0005576 extracellular region
Probab=38.52 E-value=13 Score=15.81 Aligned_cols=7 Identities=43% Similarity=1.583 Sum_probs=4.9
Q ss_pred ccccccc
Q 027258 111 FWTHEWV 117 (226)
Q Consensus 111 fw~hEW~ 117 (226)
-|.|+|.
T Consensus 2 HwS~~w~ 8 (10)
T PF00446_consen 2 HWSHGWK 8 (10)
T ss_pred ccccccC
Confidence 3778875
No 19
>COG5510 Predicted small secreted protein [Function unknown]
Probab=38.48 E-value=29 Score=21.55 Aligned_cols=19 Identities=11% Similarity=0.191 Sum_probs=10.8
Q ss_pred CCcchhhHHHHHHHHHHHh
Q 027258 1 MKLQFSIFTKLLIIQYLSI 19 (226)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (226)
||+++..++.++.+.++.+
T Consensus 1 mmk~t~l~i~~vll~s~ll 19 (44)
T COG5510 1 MMKKTILLIALVLLASTLL 19 (44)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 7887766664444444443
No 20
>PF01880 Desulfoferrodox: Desulfoferrodoxin; InterPro: IPR002742 Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulfoferrodoxin from Desulfovibrio gigas, and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin []. This domain comprises essentially the full length of neelaredoxin (O50258 from SWISSPROT, []), a monomeric, blue, non-haem iron protein of D. gigas said to bind two iron atoms per monomer with identical spectral properties. Neelaredoxin was shown recently to have significant superoxide dismutase activity []. This domain is also found (in a form in which the distance between the motifs H[HWYF]IXW and CN[IL]HGXW is somewhat shorter) as the C-terminal domain of desulfoferrodoxin, which is said to bind a single ferrous iron atom. The N-terminal domain of desulfoferrodoxin is described by IPR004462 from INTERPRO.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1Y07_D 1DFX_A 3QZB_A 2AMU_A ....
Probab=37.51 E-value=8.4 Score=28.07 Aligned_cols=8 Identities=50% Similarity=1.360 Sum_probs=6.0
Q ss_pred ceEeeeeC
Q 027258 58 FGIHGLWP 65 (226)
Q Consensus 58 ftIHGLWP 65 (226)
=.|||||=
T Consensus 87 CNlHGLW~ 94 (96)
T PF01880_consen 87 CNLHGLWE 94 (96)
T ss_dssp ETTTEEEE
T ss_pred ccccccEe
Confidence 35799993
No 21
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=35.78 E-value=68 Score=22.57 Aligned_cols=37 Identities=24% Similarity=0.348 Sum_probs=27.6
Q ss_pred cCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceE-Eeee
Q 027258 143 ANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGI-ECNV 184 (226)
Q Consensus 143 ~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l-~C~~ 184 (226)
.++..++-.. +++|+.+++.+|+.+.||....+ .|+.
T Consensus 7 HeVL~mmi~~-----~~~~t~~~L~~ai~~~FG~~arFhTCSa 44 (78)
T PF10678_consen 7 HEVLNMMIES-----GNPYTKEELKAAIIEKFGEDARFHTCSA 44 (78)
T ss_pred HHHHHHHHHc-----CCCcCHHHHHHHHHHHhCCCceEEecCC
Confidence 3455655443 57899999999999999976654 6764
No 22
>COG2033 Desulfoferrodoxin [Energy production and conversion]
Probab=35.70 E-value=15 Score=27.93 Aligned_cols=11 Identities=45% Similarity=0.951 Sum_probs=8.0
Q ss_pred CCceEeeeeCC
Q 027258 56 ADFGIHGLWPE 66 (226)
Q Consensus 56 ~~ftIHGLWP~ 66 (226)
..=.|||||=+
T Consensus 111 ~yCNiHGLWe~ 121 (126)
T COG2033 111 SYCNIHGLWEG 121 (126)
T ss_pred eecceeeeeec
Confidence 45569999954
No 23
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=35.29 E-value=46 Score=21.24 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=19.0
Q ss_pred HHHHHHhCCCCCCCCcccHHHHHHHHHHHhCC
Q 027258 145 LLQALKNAGIKPDDGFYELESIIAAIKEATGF 176 (226)
Q Consensus 145 i~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~ 176 (226)
+..+|+.++ -.++|..+|+.++++.+|.
T Consensus 9 i~~iL~~~d----l~~vT~k~vr~~Le~~~~~ 36 (54)
T PF08766_consen 9 IREILREAD----LDTVTKKQVREQLEERFGV 36 (54)
T ss_dssp HHHHHTTS-----GGG--HHHHHHHHHHH-SS
T ss_pred HHHHHHhCC----HhHhhHHHHHHHHHHHHCC
Confidence 456777773 4578999999999999974
No 24
>TIGR00320 dfx_rbo desulfoferrodoxin. This protein is described in some articles as rubredoxin oxidoreductase (rbo), and its gene shares an operon with the rubredoxin gene in Desulfovibrio vulgaris Hildenborough.
Probab=34.77 E-value=14 Score=28.35 Aligned_cols=10 Identities=40% Similarity=0.836 Sum_probs=7.3
Q ss_pred CCceEeeeeC
Q 027258 56 ADFGIHGLWP 65 (226)
Q Consensus 56 ~~ftIHGLWP 65 (226)
..=++||||=
T Consensus 114 ~yCNlHGLW~ 123 (125)
T TIGR00320 114 EYCNIHGHWK 123 (125)
T ss_pred EEccccceEE
Confidence 3446899993
No 25
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=34.17 E-value=1.5e+02 Score=21.11 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=31.6
Q ss_pred cHHHHHHHHHHHhCCCceEEeeeCCCCCccEEEEEEEEeCCC
Q 027258 162 ELESIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSA 203 (226)
Q Consensus 162 ~~~~i~~al~~~~g~~p~l~C~~~~~~~~~L~Ei~iC~d~~~ 203 (226)
-...|+++|++.+|..-.+++.-. ..-.+..++.+++|+++
T Consensus 49 ~~~~v~~~L~~lLg~~~~~~~~v~-tp~gy~iD~E~~lD~~~ 89 (93)
T PF08368_consen 49 LQQEVQEALKSLLGGENYFRSNVI-TPYGYTIDFEIVLDKNG 89 (93)
T ss_pred HHHHHHHHHHHHhCCccceEEccc-cCCCceEEEEEEECCCC
Confidence 578899999999987767776433 12257889999999985
No 26
>TIGR03595 Obg_CgtA_exten Obg family GTPase CgtA, C-terminal extension. CgtA (see model TIGR02729) is a broadly conserved member of the obg family of GTPases associated with ribosome maturation. This model represents a unique C-terminal domain found in some but not all sequences of CgtA. This region is preceded, and may be followed, by a region of low-complexity sequence.
Probab=32.66 E-value=57 Score=22.12 Aligned_cols=31 Identities=23% Similarity=0.253 Sum_probs=22.4
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCccc
Q 027258 128 DQREYFEAALKLKEKANLLQALKNAGIKPDDGFYE 162 (226)
Q Consensus 128 ~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~ 162 (226)
....||+. ..++.++.+.|.++|+++ |.++.
T Consensus 31 e~~~~f~~---~L~~~Gv~~~L~~~G~~~-GD~V~ 61 (69)
T TIGR03595 31 ENLRRFAR---KLKKLGVEDALRKAGAKD-GDTVR 61 (69)
T ss_pred HHHHHHHH---HHHHCCHHHHHHHcCCCC-CCEEE
Confidence 34456654 456789999999999998 55543
No 27
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=30.70 E-value=67 Score=20.51 Aligned_cols=32 Identities=31% Similarity=0.394 Sum_probs=25.3
Q ss_pred HHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHH
Q 027258 136 ALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIK 171 (226)
Q Consensus 136 al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~ 171 (226)
+++-.=+++|.+++.++| +...+.++|..++.
T Consensus 2 aLk~aveLgI~dii~~~g----~~~ls~~eia~~l~ 33 (51)
T PF08100_consen 2 ALKCAVELGIPDIIHNAG----GGPLSLSEIAARLP 33 (51)
T ss_dssp HHHHHHHTTHHHHHHHHT----TS-BEHHHHHHTST
T ss_pred cHHHHHHcCcHHHHHHcC----CCCCCHHHHHHHcC
Confidence 456666789999999996 47899999988776
No 28
>PF09269 DUF1967: Domain of unknown function (DUF1967); InterPro: IPR015349 The Obg family comprises a group of ancient P-loop small G proteins (GTPases) belonging to the TRAFAC (for translation factors) class and can be subdivided into several distinct protein subfamilies []. OBG GTPases have been found in both prokaryotes and eukaryotes []. The structure of the OBG GTPase from Thermus thermophilus has been determined []. This entry represents a C-terminal domain found in certain OBG GTPases. This domain contains a four-stranded beta sheet and three alpha helices flanked by an additional beta strand. It is predominantly found in the bacterial GTP-binding protein Obg, and is functionally uncharacterised. ; GO: 0000166 nucleotide binding; PDB: 1UDX_A.
Probab=28.89 E-value=82 Score=21.30 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=20.8
Q ss_pred ChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCccc
Q 027258 128 DQREYFEAALKLKEKANLLQALKNAGIKPDDGFYE 162 (226)
Q Consensus 128 ~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~ 162 (226)
....||+..+ ++.++.+.|.++|+++ |.++.
T Consensus 31 e~~~rf~~~L---~~~Gv~~~L~~~G~~~-GD~V~ 61 (69)
T PF09269_consen 31 ESLRRFQRKL---KKMGVEKALRKAGAKE-GDTVR 61 (69)
T ss_dssp GGHHHHHHHH---HHTTHHHHHHTTT--T-T-EEE
T ss_pred HHHHHHHHHH---HHCCHHHHHHHcCCCC-CCEEE
Confidence 4457777654 6699999999999997 55543
No 29
>PF06217 GAGA_bind: GAGA binding protein-like family; InterPro: IPR010409 This family includes gbp a protein from Soybean that binds to GAGA element dinucleotide repeat DNA []. It seems likely that the region which defines this family mediates DNA binding. This putative domain contains several conserved cysteines and a histidine suggesting this may be a zinc-binding DNA interaction domain.
Probab=27.10 E-value=29 Score=30.71 Aligned_cols=30 Identities=30% Similarity=0.529 Sum_probs=22.0
Q ss_pred hhhHHHHhhccCCCccCCCCCCccccccccceeee
Q 027258 87 ISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGT 121 (226)
Q Consensus 87 i~~l~~~L~~~Wp~~~~~~~~~~~fw~hEW~KHGt 121 (226)
...|+.+|...=-||. +..+| +.-|.||||
T Consensus 265 F~KlL~rLAaEGydls----~PiDL-K~hWAKHGT 294 (301)
T PF06217_consen 265 FKKLLERLAAEGYDLS----NPIDL-KDHWAKHGT 294 (301)
T ss_pred HHHHHHHHHhcccccC----Cccch-HHHHHhcCC
Confidence 4568888877777774 33567 566999998
No 30
>PF13041 PPR_2: PPR repeat family
Probab=26.63 E-value=73 Score=19.35 Aligned_cols=31 Identities=35% Similarity=0.675 Sum_probs=19.3
Q ss_pred HHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHH
Q 027258 138 KLKEKANLLQALKNAGIKPDDGFYELESIIAAI 170 (226)
Q Consensus 138 ~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al 170 (226)
+..+.+.+.+.+.+.|+.|+ .++..-+.+++
T Consensus 18 ~~~~a~~l~~~M~~~g~~P~--~~Ty~~li~~~ 48 (50)
T PF13041_consen 18 KFEEALKLFKEMKKRGIKPD--SYTYNILINGL 48 (50)
T ss_pred CHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Confidence 34444555666778999994 45555555554
No 31
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=20.10 E-value=1.1e+02 Score=16.44 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=6.3
Q ss_pred hhHHHHHHHHHHH
Q 027258 6 SIFTKLLIIQYLS 18 (226)
Q Consensus 6 ~~~~~~~~~~~~~ 18 (226)
..|++++|++++.
T Consensus 6 FalivVLFILLiI 18 (24)
T PF09680_consen 6 FALIVVLFILLII 18 (24)
T ss_pred chhHHHHHHHHHH
Confidence 3444455555443
Done!