Query 027258
Match_columns 226
No_of_seqs 136 out of 1215
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 11:42:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1iyb_A Ribonuclease, ribonucle 100.0 9.6E-67 3.3E-71 434.4 20.5 206 21-226 3-208 (208)
2 1vcz_A RNAse NGR3; hydrolase, 100.0 5.4E-65 1.8E-69 426.4 19.0 204 21-226 3-208 (217)
3 1sgl_A Trichomaglin; S-like ri 100.0 1.2E-60 4.1E-65 397.8 17.7 193 23-226 2-207 (209)
4 1jy5_A CALSEPRRP; RNAse, alpha 100.0 1.5E-60 5.1E-65 398.1 16.7 196 23-226 2-207 (212)
5 1ucd_A Ribonuclease MC; alpha 100.0 2.5E-60 8.5E-65 390.6 14.5 188 26-223 1-190 (190)
6 1ioo_A SF11-RNAse; SELF-incomp 100.0 3.3E-60 1.1E-64 391.6 15.3 191 25-225 1-196 (196)
7 1iqq_A S3-RNAse; japanese PEAR 100.0 9.2E-59 3.1E-63 384.1 15.5 191 26-223 1-200 (200)
8 3t0o_A Ribonuclease T2, ribonu 100.0 2.6E-57 8.9E-62 382.4 17.8 183 21-212 5-192 (238)
9 1bol_A Protein (ribonuclease R 100.0 6.6E-53 2.3E-57 354.0 13.5 180 24-225 22-221 (222)
10 2pqx_A Ribonuclease I; hydrola 100.0 4.8E-51 1.6E-55 347.5 6.1 191 21-226 6-243 (245)
11 3d3z_A Actibind; RNAse, hydrol 100.0 1.1E-48 3.9E-53 332.8 13.3 186 24-226 25-235 (247)
12 4dvk_A E(RNS) glycoprotein; T2 99.9 1.4E-25 4.8E-30 176.1 -0.6 74 55-139 24-97 (165)
13 2ciw_A Chloroperoxidase; oxido 84.9 0.43 1.5E-05 40.8 2.4 34 145-178 32-66 (299)
14 3ktp_B Trinucleotide repeat-co 45.9 4.7 0.00016 20.6 0.1 9 33-41 4-12 (22)
15 1dqi_A SOR, superoxide reducta 31.7 7.6 0.00026 28.7 -0.6 9 57-65 110-118 (124)
16 1y07_A Desulfoferrodoxin (RBO) 29.8 8.6 0.00029 28.5 -0.6 7 59-65 120-126 (128)
17 1vzi_A Desulfoferrodoxin; ferr 29.7 8.7 0.0003 28.4 -0.6 9 57-65 115-123 (126)
18 1q1v_A DEK protein; winged-hel 25.1 58 0.002 21.3 2.9 26 147-176 23-49 (70)
No 1
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A
Probab=100.00 E-value=9.6e-67 Score=434.36 Aligned_cols=206 Identities=67% Similarity=1.300 Sum_probs=188.1
Q ss_pred ccCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCC
Q 027258 21 CVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPT 100 (226)
Q Consensus 21 ~~~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~ 100 (226)
.++++||||+|||+|||+||+.++.||.|..+.+..+||||||||++.+|++|++|+.+..|+..++.+++++|+++||+
T Consensus 3 ~~~~~fD~~~l~l~Wpp~~C~~~~~cc~p~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~ 82 (208)
T 1iyb_A 3 EFAQDFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPYDQSQVSDLISRMQQNWPT 82 (208)
T ss_dssp CCCCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSCCCGGGGGGGHHHHHHHSCC
T ss_pred ccCCCceEEEEEEeCChHHhcCCCCCCCCCCCCCCCCCEEccccCCCCCCCCCCCCCCCCCCCchhcchhhhHhhccCCC
Confidence 46799999999999999999987778987544467899999999998888999999876779988898999999999999
Q ss_pred ccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceE
Q 027258 101 LSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGI 180 (226)
Q Consensus 101 ~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l 180 (226)
+.+++.++..||+|||+|||||+..+.+|.+||++|++|++++|+.++|+++||+|++++|++++|++||++++|..|.|
T Consensus 83 l~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~~~~t~~~I~~Ai~~~~g~~p~l 162 (208)
T 1iyb_A 83 LACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDGGFYSLNSIKNAIRSAIGYAPGI 162 (208)
T ss_dssp CCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSSCEEEHHHHHHHHHHHHSSCCEE
T ss_pred cccCCCCcchHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCcccCCceEeHHHHHHHHHHHhCCCeEE
Confidence 97666677899999999999999966699999999999999999999999999999778899999999999999999999
Q ss_pred EeeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCCCCCeeecCC
Q 027258 181 ECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF 226 (226)
Q Consensus 181 ~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~~i~~p~f 226 (226)
+|.++++++.+|.||+||||+++.++|+||....++|++.|.||+|
T Consensus 163 ~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~C~~~i~~p~f 208 (208)
T 1iyb_A 163 ECNVDESGNSQLYQIYICVDGSGSNLIECPIFPRGKCGSSIEFPTF 208 (208)
T ss_dssp EEEECTTCCEEEEEEEEEEETTSSSBCCCSCCCCCCCCSEEECCCC
T ss_pred EEeeCCCCCeEEEEEEEEecCCCCeeecCCCCCCCCCCCCcCcCCC
Confidence 9998877778999999999999878999997656789999999998
No 2
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A*
Probab=100.00 E-value=5.4e-65 Score=426.35 Aligned_cols=204 Identities=58% Similarity=1.235 Sum_probs=184.6
Q ss_pred ccCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCC
Q 027258 21 CVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPT 100 (226)
Q Consensus 21 ~~~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~ 100 (226)
.++++||||+|||+|||+||..++.||.|..+.+..+||||||||++.+|++|++|+.+..|+..++.+|+++|+++||+
T Consensus 3 ~~~~~fDy~~l~l~Wpp~~C~~~~~cc~p~~~~p~~~ftIHGLWP~~~~g~~p~~C~~~~~~~~~~~~~l~~~L~~~Wp~ 82 (217)
T 1vcz_A 3 EFAQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSLDESEISDLISTMEKNWPS 82 (217)
T ss_dssp --CCSCSEEEEEEECHHHHSSSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCCCCCTTCCCCGGGGGGGHHHHHHHSCC
T ss_pred ccCCCccEEEEEEeCChhhcCCCCCCCCCCCCCCCCCcEEEcccCCCCCCCCCCCCCCccCCChhhhhhhhhhhhccCcc
Confidence 45799999999999999999887778977544567899999999998888999999876789988899999999999999
Q ss_pred ccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCcccHHHHHHHHHHHhCCCce
Q 027258 101 LSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKP-DDGFYELESIIAAIKEATGFTPG 179 (226)
Q Consensus 101 ~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~al~~~~g~~p~ 179 (226)
+.++..++..||+|||+|||||+. .+|.+||++|++|++++|+.++|+++||+| ++++|++++|++||++++|..|.
T Consensus 83 l~~~~~~~~~fW~hEw~KHGTC~~--~~~~~YF~~a~~l~~~~n~~~~L~~~gI~Ps~g~~~t~~~I~~Ai~~~~g~~p~ 160 (217)
T 1vcz_A 83 LACPSSDGVRFWSHEWLKHGTCSA--LGERAYFQAALDFRKKSNLLENLKNAEITPRNGEHYTLESIKKAIEEGVGHSPY 160 (217)
T ss_dssp CSSSCCCSHHHHHHHHHHTGGGTT--SCHHHHHHHHHHHHHHHCHHHHHHHTTCCCEEEEEEEHHHHHHHHHHHHSSCCE
T ss_pred cccCCCCcchHHhhhccCCeecCC--CCHHHHHHHHHHHHHHcccHHHHHHCCCccCcCccccHHHHHHHHHHHHCCCeE
Confidence 976566678999999999999999 699999999999999999999999999999 68899999999999999999999
Q ss_pred EEeeeCCCCCccEEEEEEEEeCCCCceecCCCCCC-CCCCCCeeecCC
Q 027258 180 IECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPR-KKCASTVQFPRF 226 (226)
Q Consensus 180 l~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~-~~C~~~i~~p~f 226 (226)
|+|.++.+++.+|.||+||||+++.++|+||.... .+|++.|.||+|
T Consensus 161 l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~~C~~~i~~p~~ 208 (217)
T 1vcz_A 161 IECNVDTQGNHQIYQVYLCVDKTATDFIDCPIFPHGRGCGSKIEFPPF 208 (217)
T ss_dssp EEEEECTTSCEEEEEEEEEEETTSSSEECCSSCCCCCCCCSEEEECCC
T ss_pred EEEeecCCCCeEEEEEEEEecCCCCeeeeCCCCCCCCCCCCCeEEcCC
Confidence 99998777778999999999999888999997554 489999999986
No 3
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1
Probab=100.00 E-value=1.2e-60 Score=397.84 Aligned_cols=193 Identities=32% Similarity=0.733 Sum_probs=169.6
Q ss_pred CCCccEEEEEeecccccccCC------CCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhc
Q 027258 23 SQDFDFFYFVQQWPGSYCDTK------QSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQ 96 (226)
Q Consensus 23 ~~~fD~~~l~l~Wpp~~C~~~------~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~ 96 (226)
+++||||+|||+|||+||... ..+|... ...+||||||||++.+|++|++|+ +..|+..++.+++++|++
T Consensus 2 ~~~fD~~~l~l~Wpp~~C~~~~~~~~~~~~C~~~---~~~~ftIHGLWP~~~~g~~p~~C~-~~~~~~~~~~~l~~~L~~ 77 (209)
T 1sgl_A 2 EREFDYFILALQWAGTSCRSGGACCPYNGCCKAD---SPTQFTIHGLRPEYSGGERPSCCT-GGSFDPDEIMPFFGKLVE 77 (209)
T ss_dssp --CCSEEEEEEEEHHHHTSSCCCCCTTBTTCSSS---CCCCEEEEEEEECCCSSCCCCCCS-CCCCCGGGGGGGHHHHHH
T ss_pred CCCceEEEEEEECCHHHhcCCccCCCCCCCCCCC---CCCCcEEccccCCCCCCCCCCCCC-CCcCCchhhhhHHHHHHc
Confidence 579999999999999999875 3467542 258999999999988889999998 467998888889999999
Q ss_pred cCCCccCC-----CCCCccccccccceeeeccCCcC-ChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCcccHHHHHHH
Q 027258 97 NWPTLSCP-----SNDGTKFWTHEWVKHGTCAESEL-DQREYFEAALKLKEKANLLQALKNAGIKP-DDGFYELESIIAA 169 (226)
Q Consensus 97 ~Wp~~~~~-----~~~~~~fw~hEW~KHGtCs~~~~-~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~a 169 (226)
+||++.++ ..++..||+|||+|||||+..++ +|.+||++|++|++++|++++|+++||+| .+++|++++|++|
T Consensus 78 ~Wp~l~~~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~L~~~~~l~~~L~~~gI~P~~g~~yt~~~I~~A 157 (209)
T 1sgl_A 78 YWPTYRCALEQSCNNRKEILWGQQYEKHGTCASPVIKGEWNYFKKTLKLFMKYNVDKALEDAGIVASNSKMYDLKDIVVA 157 (209)
T ss_dssp HSCBSCSSCEECGGGCEECHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHTCHHHHHHHHTCCCCSSCEEEHHHHHHH
T ss_pred cCcCcccccccccCCCcchHHHHhhhcCccccccccccHHHHHHHHHHHHHHcChHHHHHHCCCcCCCCccccHHHHHHH
Confidence 99999532 23567899999999999999665 99999999999999999999999999999 5889999999999
Q ss_pred HHHHhCCCceEEeeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCCCCCeeecCC
Q 027258 170 IKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF 226 (226)
Q Consensus 170 l~~~~g~~p~l~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~~i~~p~f 226 (226)
|++++|..|.|+|.++ .+|.||+||||++ .++|+|+ ..++|++.|.||+|
T Consensus 158 i~~~~g~~p~l~C~~~----~~L~Ev~iC~~~~-~~~i~C~--~~~~C~~~i~~p~~ 207 (209)
T 1sgl_A 158 VESAVGARPKLRCDEE----GLVQKLSLCFDKD-FKPRDCV--QVGSCPRYVSLPEI 207 (209)
T ss_dssp HHHHHSSCCEEEECTT----SBEEEEEEEEETT-CCEECCC--CCCCSCSEEECCCC
T ss_pred HHHHhCCCeEEEECCC----CeEEEEEEEeCCC-ccEeCCC--CCCCCCCCeEeCCC
Confidence 9999999999999763 3999999999999 6899995 35689999999986
No 4
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1
Probab=100.00 E-value=1.5e-60 Score=398.11 Aligned_cols=196 Identities=34% Similarity=0.738 Sum_probs=168.9
Q ss_pred CCCccEEEEEeecccccccCCCCccCCCC---CCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCC
Q 027258 23 SQDFDFFYFVQQWPGSYCDTKQSCCYPKS---GKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWP 99 (226)
Q Consensus 23 ~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~---~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp 99 (226)
.++||||+|||+|||+||+..+.+|.+.. +.+..+||||||||++.+|++|++|+ +..|+..++.+++++|+++||
T Consensus 2 ~~~fDy~~l~l~Wpp~~C~~~~~~c~~~~C~~~~~~~~ftIHGLWP~~~~g~~p~~C~-~~~~~~~~i~~l~~~L~~~WP 80 (212)
T 1jy5_A 2 HKEFDYFTLALTWSGTECLSVKDSCPTNACSRSEVETGFTIKGLWPDYDDGTWPSCCE-GAKYDQNEISILSNDLSKYWP 80 (212)
T ss_dssp CCCCCEEEEEEEEHHHHTCC----CTTBGGGCTTSCSCEEEEEEEEECTTSCCCCSCS-SCCCCGGGGGGGHHHHHHHSC
T ss_pred CCCceEEEEEEEcCHHHhcCCCCCCCCccccCCCCCCccEEeeeecccCCCCCCCCCC-CCCCChhhhHHHHHHHHhhCC
Confidence 47999999999999999988765665321 23468999999999988899999996 467998899999999999999
Q ss_pred CccCCCCC-----CccccccccceeeeccCCc-CChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCcccHHHHHHHHHH
Q 027258 100 TLSCPSND-----GTKFWTHEWVKHGTCAESE-LDQREYFEAALKLKEKANLLQALKNAGIKP-DDGFYELESIIAAIKE 172 (226)
Q Consensus 100 ~~~~~~~~-----~~~fw~hEW~KHGtCs~~~-~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~~i~~al~~ 172 (226)
++..++.+ +..||+|||+|||||+..+ .+|.+||++|++|++++|+.++|+++||+| ++++|++++|++||++
T Consensus 81 ~l~~~~~~~~~~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~nl~~~L~~~gI~Ps~g~~yt~~~I~~Ai~~ 160 (212)
T 1jy5_A 81 SYSCPSSSACGSFDASDLAYEWAKHGTCSSPVLGNQYEYFSTTLMLYFKYNISEILSESGYLPSNTAEYKVEGIMSAIQS 160 (212)
T ss_dssp BCCSSCEEETTEEESSHHHHHHHHTGGGGTTTSCSHHHHHHHHHHHHHHSCHHHHHHTTTCCCCSSCCEEHHHHHHHHHH
T ss_pred cccccccccccccchhHHHHhhhhCceeCcccccCHHHHHHHHHHHHHhcCHHHHHHHcCCcCCCCceEcHHHHHHHHHH
Confidence 99654322 2389999999999999864 499999999999999999999999999999 7889999999999999
Q ss_pred HhCCCceEEeeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCCCCCeeecCC
Q 027258 173 ATGFTPGIECNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQFPRF 226 (226)
Q Consensus 173 ~~g~~p~l~C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~~i~~p~f 226 (226)
++|..|.|+|.+ ..|.||+||||++ .++|+||. ..++|++.|.||+|
T Consensus 161 ~~g~~p~l~C~~-----~~l~ev~lC~~~~-~~~i~C~~-~~~~C~~~i~~p~~ 207 (212)
T 1jy5_A 161 ALRVTPVVKCKS-----DAVEQVQICFDKT-LQLQECPS-TASTCPSLVSLPIK 207 (212)
T ss_dssp HHSSCCEEEEET-----TEEEEEEEEECTT-SCEECCCC-CCCCSCSEEBCCCC
T ss_pred hhCCCEEEEeCC-----CCcceEEEEEcCC-CcEecCCC-CCCCCCCCEEeCCC
Confidence 999999999975 3699999999999 58999993 35689999999986
No 5
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A*
Probab=100.00 E-value=2.5e-60 Score=390.56 Aligned_cols=188 Identities=35% Similarity=0.759 Sum_probs=166.4
Q ss_pred ccEEEEEeecccccccCC-CCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCccCC
Q 027258 26 FDFFYFVQQWPGSYCDTK-QSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCP 104 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~-~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~~~ 104 (226)
||||+|||+|||+||+.+ ..+|... . +.+||||||||++ ++++|++|+.+ .|+..++.+++++|+++||++.
T Consensus 1 fDy~~l~l~Wpp~~C~~~~~~~C~~~--~-p~~ftIHGLWPn~-~~~~p~~C~~~-~~~~~~~~~l~~~L~~~Wp~l~-- 73 (190)
T 1ucd_A 1 FDSFWFVQQWPPAVCSFQKSGSCPGS--G-LRTFTIHGLWPQQ-SGTSLTNCPGS-PFDITKISHLQSQLNTLWPNVL-- 73 (190)
T ss_dssp CCEEEEEEECHHHHHHTCCSSCCGGG--G-CCSCEEEEEEEEE-TTEECCSCSCC-CCCGGGGGGGHHHHHHHSCCSS--
T ss_pred CcEEEEEEECCHHHhccCCCCCCCCC--C-CCCeEEEcCCCCC-CCCCCCCCCcc-cCCccccchhhHHHHhcCCCcC--
Confidence 899999999999999886 4567431 1 3899999999954 77899999864 7988888889999999999995
Q ss_pred CCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceEEeee
Q 027258 105 SNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIECNV 184 (226)
Q Consensus 105 ~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l~C~~ 184 (226)
.+++..||+|||+|||||+..+++|.+||++|++|++++|++++|+++||+|++++|++++|++||++++|.+|.|+|.+
T Consensus 74 ~~~~~~fW~hEw~KHGTC~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~~~~~t~~~I~~ai~~~~g~~p~l~C~~ 153 (190)
T 1ucd_A 74 RANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALRPHAAGPNGRTKSRQAIKGFLKAKFGKFPGLRCRT 153 (190)
T ss_dssp SSCHHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHTCCHHHHHGGGTCSCSSSEEEHHHHHHHHHHHHSSCCEEEEEE
T ss_pred CCCCCchHHhccccCcEeCCCCCCHHHHHHHHHHHHHHcCHHHHHHHCCCCCCCceEeHHHHHHHHHHHHCCCeEEEecc
Confidence 34568899999999999997668999999999999999999999999999997667999999999999999999999998
Q ss_pred CCC-CCccEEEEEEEEeCCCCceecCCCCCCCCCCCCeee
Q 027258 185 DPE-HNSQLYQIYMCVDTSASEFIQCPKQPRKKCASTVQF 223 (226)
Q Consensus 185 ~~~-~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C~~~i~~ 223 (226)
+++ +..+|.||+||||+++.++|+||. .+|++.+.|
T Consensus 154 ~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~---~~C~~~~~f 190 (190)
T 1ucd_A 154 DPQTKVSYLVQVVACFAQDGSTLIDCTR---DTCGANFIF 190 (190)
T ss_dssp CTTTCCEEEEEEEEEEETTSSSEECCCC---CCCCSEEEC
T ss_pred CCCCCCcEEEEEEEEecCCCCeeccCCC---CCCCCCCCC
Confidence 755 457999999999999888999997 589988876
No 6
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1
Probab=100.00 E-value=3.3e-60 Score=391.58 Aligned_cols=191 Identities=31% Similarity=0.706 Sum_probs=165.0
Q ss_pred CccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCccCC
Q 027258 25 DFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCP 104 (226)
Q Consensus 25 ~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~~~ 104 (226)
+||||+|||+|||+||+.+ .|+.+. +.+||||||||++. +++|++|+.+..|+...+ +++++|+++||++..+
T Consensus 1 ~fDy~~l~l~Wpp~~C~~~-~C~~~~----p~~ftIHGLWP~~~-~~~p~~C~~~~~~~~~~~-~l~~~L~~~Wp~l~~~ 73 (196)
T 1ioo_A 1 DFEYLQLVLTWPASFCYAN-HCERIA----PNNFTIHGLWPDNV-KTRLHNCKPKPTYSYFTG-KMLNDLDKHWMQLKFE 73 (196)
T ss_dssp CCSEEEEEEECHHHHHHHS-CCSSCC----CSSCEEEEEEEECS-SSCCCSCSSCCCCCCCCH-HHHHHHHHHTCCTTSC
T ss_pred CceEEEEEeeCCHHHccCC-CCCCCC----CCCcEEeceEECCC-CCCCCcCCCCCCcCchHH-HHHHHHhccCCCCCcc
Confidence 5999999999999999864 344332 36999999999884 579999986677887666 8999999999999532
Q ss_pred C---CCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCCceEE
Q 027258 105 S---NDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFTPGIE 181 (226)
Q Consensus 105 ~---~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p~l~ 181 (226)
. .++..||+|||+|||||++.+++|.+||++|++|++++|+.++|+++||+| +.+|++++|++||++++|..|.|+
T Consensus 74 ~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P-~~~~t~~~I~~Ai~~~~g~~p~l~ 152 (196)
T 1ioo_A 74 QDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIP-GSSYTFQDIFDAIKTVSQENPDIK 152 (196)
T ss_dssp HHHHHHHCHHHHHHHHHTGGGCTTTCCHHHHHHHHHHHHHTCCHHHHHHHTTCCT-TEEECHHHHHHHHHHHHSSCCEEE
T ss_pred cccccccchHHHhhCcCCcCcCCCcCCHHHHHHHHHHHHHHCCHHHHHHHCCCcc-CCCcCHHHHHHHHHHHhCCCeEEE
Confidence 1 134789999999999999976799999999999999999999999999999 556999999999999999999999
Q ss_pred eeeCCCCCccEEEEEEEEeCCCCceecCCCCCCCCC--CCCeeecC
Q 027258 182 CNVDPEHNSQLYQIYMCVDTSASEFIQCPKQPRKKC--ASTVQFPR 225 (226)
Q Consensus 182 C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~~~~~C--~~~i~~p~ 225 (226)
|..++++..+|.||+||||+++.++|+||.. .+| ++.|.||+
T Consensus 153 C~~~~~~~~~L~Ev~iC~~~~~~~~i~Cp~~--~~C~~~~~i~fp~ 196 (196)
T 1ioo_A 153 CAEVTKGTPELYEIGICFTPNADSMFRCPQS--DTCDKTAKVLFRR 196 (196)
T ss_dssp EECSSTTCCEEEEEEEEECTTSSSEECCCCC--CCSCTTSCEEECC
T ss_pred eeecCCCCeEEEEEEEEEeCCCCEEeCCcCC--CCCCCCCCeecCC
Confidence 9877555679999999999998779999964 579 46799985
No 7
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1
Probab=100.00 E-value=9.2e-59 Score=384.07 Aligned_cols=191 Identities=30% Similarity=0.657 Sum_probs=165.3
Q ss_pred ccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCccCCC
Q 027258 26 FDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPS 105 (226)
Q Consensus 26 fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~~~~ 105 (226)
||||+|||+|||+||+..+.+|.+. +..+||||||||++.+|++|++|+. ..|+. .+.+++++|+.+||++.. .
T Consensus 1 fDy~~l~l~Wpp~~C~~~~~~C~~~---~~~~ftIHGLWP~~~~g~~p~~C~~-~~~~~-~~~~l~~~L~~~Wp~~~~-~ 74 (200)
T 1iqq_A 1 YDYFQFTQQYQLAVCNSNRTLCKDP---PDKLFTVHGLWPSNMVGPDPSKCPI-KNIRK-REKLLEHQLEIIWPNVFD-R 74 (200)
T ss_dssp CCEEEEEEEEHHHHTTSSSSCCSSC---CCSSEEEEEEEEECSSSSCCCSCCC-SCCCC-CCHHHHHHHHHHSCCSSC-G
T ss_pred CeEEEEEEECChHHhcCCCCCCCCC---CCCCeEEeecccccCCCCCCCCCCc-hhcCc-cchhhhhhhhccCCCccc-C
Confidence 8999999999999999876677642 3579999999999988889999986 46876 567899999999999953 3
Q ss_pred CCCccccccccceeeeccCC-cCChHHHHHHHHHHH--HhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHh-CCCceEE
Q 027258 106 NDGTKFWTHEWVKHGTCAES-ELDQREYFEAALKLK--EKANLLQALKNAGIKPDDGFYELESIIAAIKEAT-GFTPGIE 181 (226)
Q Consensus 106 ~~~~~fw~hEW~KHGtCs~~-~~~~~~YF~~al~L~--~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~-g~~p~l~ 181 (226)
+++..||+|||+|||||+.+ +++|.+||++|++|+ +++|+.++|+++||+|++++|++++|++||++++ |..|.|+
T Consensus 75 ~~~~~fW~hEw~KHGTC~~~~~~~~~~YF~~a~~l~~~~k~n~~~~L~~~~I~P~~~~~t~~~I~~Ai~~~~~g~~p~l~ 154 (200)
T 1iqq_A 75 TKNNLFWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLK 154 (200)
T ss_dssp GGHHHHHHHHHHHTGGGSTTTSCSHHHHHHHHHHHHTTTCCCHHHHHHHTTCCSSCCEECHHHHHHHHHTTTTTCCCEEE
T ss_pred CCCChHHHhhhhCCcCcCCcccCCHHHHHHHHHHHHhhcccCHHHHHHHcCCccCCCeecHHHHHHHHHHhcCCCceEEE
Confidence 45678999999999999954 489999999999999 7799999999999999777899999999999999 8999999
Q ss_pred eeeCCCCCccEEEEEEEEeCCCCceecCCCC----CCCCCCC-Ceee
Q 027258 182 CNVDPEHNSQLYQIYMCVDTSASEFIQCPKQ----PRKKCAS-TVQF 223 (226)
Q Consensus 182 C~~~~~~~~~L~Ei~iC~d~~~~~~~~Cp~~----~~~~C~~-~i~~ 223 (226)
|.++ .+..+|.||+||||+++.++|+||.. ...+|++ .|.|
T Consensus 155 C~~~-~~~~~L~Ev~iC~~~~~~~~i~C~~~~~~~~~~~Cp~~~i~y 200 (200)
T 1iqq_A 155 CQKK-GTTTELVEITLCSDKSGEHFIDCPHPFEPISPHYCPTNNIKY 200 (200)
T ss_dssp EEEE-TTEEEEEEEEEEECTTSSSEECCSCCCCTTSTTCCCSSCEEC
T ss_pred EeeC-CCCeEEEEEEEEEECCCCeEEeCCCCCCCCCCCCCCccCcCC
Confidence 9875 34578999999999998789999874 1357986 6875
No 8
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens}
Probab=100.00 E-value=2.6e-57 Score=382.39 Aligned_cols=183 Identities=30% Similarity=0.676 Sum_probs=155.6
Q ss_pred ccCCCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCC
Q 027258 21 CVSQDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPT 100 (226)
Q Consensus 21 ~~~~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~ 100 (226)
...++||||+|||+|||+||.....+|.. +...||||||||++. ++|+.+..|+.+++++++++|+++||+
T Consensus 5 ~~~~~fD~~~lv~qWppt~C~~~~~~C~~----p~~~FTIHGLWP~~~-----~~C~~s~~f~~~~i~~l~~~L~~~WPd 75 (238)
T 3t0o_A 5 RDNHEWKKLIMVQHWPETVCEKIQNDCRD----PPDYWTIHGLWPDKS-----EGCNRSWPFNLEEIKDLLPEMRAYWPD 75 (238)
T ss_dssp -----CCEEEEEEECHHHHCCSSSGGGTS----CCSSCEEEEEEESSC-----CCCCTTSCCCGGGGGGGHHHHHHHSCC
T ss_pred cCCCCCcEEEEEEECCCccccCCCCCCCC----CccccEEcccccccc-----CCCCCCcccchhhhhHHHHHHHhhCcc
Confidence 45689999999999999999876556753 246899999999874 589877789999999999999999999
Q ss_pred ccCCCCCCccccccccceeeeccCC---cCChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHHHHHHHHHHHhCCC
Q 027258 101 LSCPSNDGTKFWTHEWVKHGTCAES---ELDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELESIIAAIKEATGFT 177 (226)
Q Consensus 101 ~~~~~~~~~~fw~hEW~KHGtCs~~---~~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~ 177 (226)
+..+++++..||+|||+|||||++. +.+|.+||++|++|++++|+.++|+++||+|++..|++++|++||++++|..
T Consensus 76 l~~~~~~~~~fW~hEW~KHGTC~~~~~~~~~q~~YF~~a~~L~~~~n~~~~L~~~gI~P~~~~yt~~~I~~Ai~~~~g~~ 155 (238)
T 3t0o_A 76 VIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVI 155 (238)
T ss_dssp CSSCCSSTHHHHHHHCCCCCHHHTTSGGGCSHHHHHHHHHHHHHHHCHHHHHHHTTCCCCSSCEEHHHHHHHHHHHHSSC
T ss_pred cccCCCCchHHHHHhhhcCceecCCccccccHHHHHHHHHHHHHHcccHHHHHhcCccCCCCcccHHHHHHHHHHHHCCC
Confidence 9766567789999999999999985 3489999999999999999999999999999655799999999999999999
Q ss_pred ceEEeeeCCCCC--ccEEEEEEEEeCCCCceecCCCC
Q 027258 178 PGIECNVDPEHN--SQLYQIYMCVDTSASEFIQCPKQ 212 (226)
Q Consensus 178 p~l~C~~~~~~~--~~L~Ei~iC~d~~~~~~~~Cp~~ 212 (226)
|.|+|.++.+++ .+|.||+||||+++.++||||..
T Consensus 156 P~l~C~~~~~~~~~~~L~EV~iC~d~~~~~~idCp~~ 192 (238)
T 3t0o_A 156 PKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNCTEP 192 (238)
T ss_dssp CEEEEECCC---CCCEEEEEEEEEETTTCCEECCC--
T ss_pred eEEEEecCCCCCcccEEEEEEEEeecCCCEEecCCCC
Confidence 999998765542 47999999999977899999974
No 9
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1
Probab=100.00 E-value=6.6e-53 Score=354.05 Aligned_cols=180 Identities=27% Similarity=0.648 Sum_probs=155.1
Q ss_pred CCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCC--cCCCCCCCCCc-ch-----hhhHHHHhh
Q 027258 24 QDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYP--SNCDPDSVFEK-SQ-----ISDLISDLR 95 (226)
Q Consensus 24 ~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p--~~C~~~~~~~~-~~-----i~~l~~~L~ 95 (226)
..||||+|+|+|+|++- +.++||||||||++.+|++| ++|+.+..|+. .. ..+++++|+
T Consensus 22 p~fd~~~l~q~W~p~~~-------------p~~~fTIHGLWP~~~~g~~pp~~~C~~s~~~~~~~~~l~~~~~~l~~~L~ 88 (222)
T 1bol_A 22 PEYGLVVLNMQWAPGYG-------------PDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKDSSLYNSML 88 (222)
T ss_dssp CSSCEEEEEEECCTTSS-------------CTTCCEEEEEEEECTTSCBCCTTCSCSTTCCSCHHHHHHHHCHHHHHHHH
T ss_pred CCCCeEEEEEecCCCCC-------------CCcceEEcceeecCcCCCCCccCCCCCcccccchhhhhhccchHHHHHHh
Confidence 34999999999999871 24799999999999888899 99987666742 21 146889999
Q ss_pred ccCCCccCCCCCCccccccccceeeeccCCc-----------CChHHHHHHHHHHHHhcCHHHHHHhCCCCCCCCcccHH
Q 027258 96 QNWPTLSCPSNDGTKFWTHEWVKHGTCAESE-----------LDQREYFEAALKLKEKANLLQALKNAGIKPDDGFYELE 164 (226)
Q Consensus 96 ~~Wp~~~~~~~~~~~fw~hEW~KHGtCs~~~-----------~~~~~YF~~al~L~~~~ni~~~L~~~gI~P~~~~~~~~ 164 (226)
++||++. +++..||+|||+|||||++.+ .++.+||++|++|++++|+.++|+++||+| +.+|+++
T Consensus 89 ~~WP~l~---~~~~~fW~hEW~KHGTC~~~~~~~c~~~y~~~~~~~~YF~~al~L~~~~n~~~~L~~~gI~P-~~~yt~~ 164 (222)
T 1bol_A 89 TYWPSNQ---GNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITP-GGTYTAT 164 (222)
T ss_dssp HHSCCTT---SCHHHHHHHHHHHTGGGCGGGSGGGCTTCCTTHHHHHHHHHHHHHHHHSCHHHHHHTTTCCS-SEEEEHH
T ss_pred hcCCCcc---ccccHHHHhhhhcCeeeccccCccccccccccccHHHHHHHHHHHHHHcCcHHHHHHcCCCC-CCcCcHH
Confidence 9999984 456899999999999998743 367899999999999999999999999999 4469999
Q ss_pred HHHHHHHHHhCCCceEEeeeCCCCCccEEEEEEEEeCCC-CceecCCCCCCCCCCCCeeecC
Q 027258 165 SIIAAIKEATGFTPGIECNVDPEHNSQLYQIYMCVDTSA-SEFIQCPKQPRKKCASTVQFPR 225 (226)
Q Consensus 165 ~i~~al~~~~g~~p~l~C~~~~~~~~~L~Ei~iC~d~~~-~~~~~Cp~~~~~~C~~~i~~p~ 225 (226)
+|++||++++|..|.|+|.+ .+|.||+||||+++ .++++|+.....+|++.|+||+
T Consensus 165 ~I~~Ai~~~~g~~p~l~C~~-----~~L~Ev~ic~~~~g~~~~~~~~~~~~~~C~~~i~~pp 221 (222)
T 1bol_A 165 EMQSAIESYFGAKAKIDCSS-----GTLSDVALYFYVRGRDTYVITDALSTGSCSGDVEYPT 221 (222)
T ss_dssp HHHHHHHHHHSSCCEEEEET-----TEEEEEEEEEEEETTTEEEEECCSCCCSCCSEEEECC
T ss_pred HHHHHHHHHhCCCeEEEECC-----CEEeEEEEEEEcCCCCCeEECCCCCCCCCCCCeEeCC
Confidence 99999999999999999973 48999999999985 6799998765678998899996
No 10
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A*
Probab=100.00 E-value=4.8e-51 Score=347.48 Aligned_cols=191 Identities=18% Similarity=0.379 Sum_probs=150.6
Q ss_pred ccCCCccEEEEEeecccccccCCC-------C-ccCCCCCCCC-CCceEeeeeCCCCC---------CCC-CcCCCCCC-
Q 027258 21 CVSQDFDFFYFVQQWPGSYCDTKQ-------S-CCYPKSGKPA-ADFGIHGLWPEYKD---------GSY-PSNCDPDS- 80 (226)
Q Consensus 21 ~~~~~fD~~~l~l~Wpp~~C~~~~-------~-~c~~~~~~~~-~~ftIHGLWP~~~~---------~~~-p~~C~~~~- 80 (226)
+++++||||+|||+|||+||+... . |+.|..+.+. ..||||||||++.. +++ |++|....
T Consensus 6 ~~~~~fDy~~LalsWppsfC~~~~~~~~~~~~~C~~p~~~~~~~~~ftIHGLWP~~~~~~~~~g~~~~~~~~~~C~~~~~ 85 (245)
T 2pqx_A 6 KQYGDFDRYVLALSWQTGFCQSQHDRNRNERDECRLQTETTNKADFLTVHGLWPGLPKSVAARGVDERRWMRFGCATRPI 85 (245)
T ss_dssp SSSCCCCEEEEEEEEHHHHHHHHHHTTCCCCHHHHSCCCCSSGGGGEEEEEEEECCCHHHHTTTCCHHHHHHHGGGCTTT
T ss_pred CCCCCcceEEEEEecCHHHhCCCccccCCCccccCCcccCCCCCCceEEEecCCCCCCCccccccccccccccCcccCcc
Confidence 467899999999999999997742 2 4444322222 34999999998752 124 36786321
Q ss_pred ------------CCCcchh-hhHHHHhhccCCCccCCCCCCccccccccceeeeccCCcCChHHHHHHHHHHHHhcCHH-
Q 027258 81 ------------VFEKSQI-SDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFEAALKLKEKANLL- 146 (226)
Q Consensus 81 ------------~~~~~~i-~~l~~~L~~~Wp~~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~~al~L~~~~ni~- 146 (226)
.++...+ .+++++|+.+||++.. +..||+|||+|||||++ ++|.+||++|++|++++|+.
T Consensus 86 ~~~~~~~~~~~C~~~~~~l~~~l~~~L~~~WP~~~~----~~~fw~hEW~KHGTC~~--~~~~~YF~~a~~l~~~~n~~~ 159 (245)
T 2pqx_A 86 PNLPEARASRMCSSPETGLSLETAAKLSEVMPGAGG----RSCLERYEYAKHGACFG--FDPDAYFGTMVRLNQEIKESE 159 (245)
T ss_dssp TCCCCCCGGGGGGSCCCCCCHHHHHHHHHHCTTSST----TTCHHHHHHHHHTGGGT--CCHHHHHHHHHHHHHHHHHSH
T ss_pred cccccccccccccCccccCCHHHHHHHHHhCCCCCC----cchHHHHHhhhCCeecC--CCHHHHHHHHHHHHHHhccch
Confidence 1232233 4688999999999842 36799999999999999 99999999999999999764
Q ss_pred --HHHHhCCCCCCCCcccHHHHHHHHHHHhCCCc----eEEeeeCCCCCccEEEEEEEEeCC-------CCceecCCCCC
Q 027258 147 --QALKNAGIKPDDGFYELESIIAAIKEATGFTP----GIECNVDPEHNSQLYQIYMCVDTS-------ASEFIQCPKQP 213 (226)
Q Consensus 147 --~~L~~~gI~P~~~~~~~~~i~~al~~~~g~~p----~l~C~~~~~~~~~L~Ei~iC~d~~-------~~~~~~Cp~~~ 213 (226)
++|++. .+++|++++|++||++++|..| .|+|.++ ..+|.||+||||++ +.++|+||.
T Consensus 160 ~~~~l~~~----~g~~~t~~~I~~Ai~~~~g~~p~~~v~l~C~~~---~~~L~Ev~iC~~~~~~~~~~~~~~~i~cp~-- 230 (245)
T 2pqx_A 160 AGKFLADN----YGKTVSRRDFDAAFAKSWGKENVKAVKLTCQGN---PAYLTEIQISIKADAINAPLSANSFLPQPH-- 230 (245)
T ss_dssp HHHHHHHT----TTSEEEHHHHHHHHHHHHCGGGGGGEEEEEETT---TTEEEEEEEEEEGGGTTSCCCTTSBCCCSC--
T ss_pred HHHHhhcC----CCceEcHHHHHHHHHHHhCCCCCcceEEEECCC---CCEEEEEEEEEcccccCCCccccccccCCC--
Confidence 568773 4789999999999999999776 9999863 36899999999998 667999995
Q ss_pred CCCCCCCeeecCC
Q 027258 214 RKKCASTVQFPRF 226 (226)
Q Consensus 214 ~~~C~~~i~~p~f 226 (226)
.++|++.|.||++
T Consensus 231 ~~~C~~~~~~~~~ 243 (245)
T 2pqx_A 231 PGNCGKTFVIDKA 243 (245)
T ss_dssp CBSCCSEEECCCS
T ss_pred CCCCCCCeEeCCC
Confidence 3689999999985
No 11
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger}
Probab=100.00 E-value=1.1e-48 Score=332.85 Aligned_cols=186 Identities=27% Similarity=0.630 Sum_probs=155.2
Q ss_pred CCccEEEEEeecccccccCCCCccCCCCCCCCCCceEeeeeCCCCCCCCCcCCCCCCCCCc-ch------hhhHHHHhhc
Q 027258 24 QDFDFFYFVQQWPGSYCDTKQSCCYPKSGKPAADFGIHGLWPEYKDGSYPSNCDPDSVFEK-SQ------ISDLISDLRQ 96 (226)
Q Consensus 24 ~~fD~~~l~l~Wpp~~C~~~~~~c~~~~~~~~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~-~~------i~~l~~~L~~ 96 (226)
.+-+.++++|.|+..-| . .+.++||||||||++.++.+|++|+.+..|+. .. ..+|++.|++
T Consensus 25 ~p~g~l~~tq~W~~~p~-------~----~p~~~fTIHGLWP~~~~g~~p~~C~~s~~~~~i~~~l~~~~~~~ll~~L~~ 93 (247)
T 3d3z_A 25 SPGGSLLQTQFWDYDPS-------D----GPSDSWTIHGLWPDNCDGTYQEYCDESREYSNITSILEAQNRTELLSYMKE 93 (247)
T ss_dssp CSCCEEEEEEECCBTTB-------C----SCTTCCEEEEEEEECTTSCBCCCCCGGGCCSCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEEEeecCCCCC-------C----CCccccEEeeeeccCCCCCCCCCCCCcccccchhhhhhhcchHHHHHHHHh
Confidence 34599999999997532 1 13579999999999988899999986556752 22 2568899999
Q ss_pred cCCCccCCCCCCccccccccceeeeccCCc-----------CChHHHHHHHHHHHHhcCHHHHHHhCCCCC-CCCcccHH
Q 027258 97 NWPTLSCPSNDGTKFWTHEWVKHGTCAESE-----------LDQREYFEAALKLKEKANLLQALKNAGIKP-DDGFYELE 164 (226)
Q Consensus 97 ~Wp~~~~~~~~~~~fw~hEW~KHGtCs~~~-----------~~~~~YF~~al~L~~~~ni~~~L~~~gI~P-~~~~~~~~ 164 (226)
+||++.. ..++..||+|||+|||||+.++ .++.+||++|++|++++|+.++|+++||+| .+++|+++
T Consensus 94 ~Wp~l~~-~~~~~~fW~hEW~KHGTC~~~~~~~C~~~y~~~~~~~~YF~~al~L~~k~n~~~~L~~~gI~P~~~~tyt~~ 172 (247)
T 3d3z_A 94 YWPDYEG-ADEDESFWEHEWNKHGTCINTIEPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLS 172 (247)
T ss_dssp HSCCTTC-GGGHHHHHHHHHHHTGGGCGGGSGGGBSSCCTTHHHHHHHHHHHHHHTTCCHHHHHHHTTCCCCSSCCBCHH
T ss_pred hCccccC-CCCccHHHHHhhhcCeeecccCCcccccccccccCHHHHHHHHHHHHHhcCcHHHHHHCCccCCCCceECHH
Confidence 9999942 1256889999999999998743 357899999999999999999999999999 56789999
Q ss_pred HHHHHHHHHh-CCCceEEeeeCCCCCccEEEEEEEEeCCCC----ceecCCCCCCCCCCCC-eeecCC
Q 027258 165 SIIAAIKEAT-GFTPGIECNVDPEHNSQLYQIYMCVDTSAS----EFIQCPKQPRKKCAST-VQFPRF 226 (226)
Q Consensus 165 ~i~~al~~~~-g~~p~l~C~~~~~~~~~L~Ei~iC~d~~~~----~~~~Cp~~~~~~C~~~-i~~p~f 226 (226)
+|++||++++ |..|.|+|.+ .+|.||+||||+++. ++++|+.....+|++. |+||++
T Consensus 173 ~I~~Ai~~~~~g~~p~l~C~~-----~~L~Ev~iC~~~~~~~~~~~~~~~~~~~~~~C~~~~I~~pp~ 235 (247)
T 3d3z_A 173 DIEDALAAIHDGYPPYVGCED-----GALSQLYYYFNVKGSAIGGTYVASERLEDSNCKDSGIKYPPK 235 (247)
T ss_dssp HHHHHHHTTTTTCCCEEEEET-----TEEEEEEEEEEEESCTTTSEEEECCCSSCBSSCSSCBBCCCT
T ss_pred HHHHHHHHhcCCCCeEEEeCC-----CEEEEEEEEEecCCCccCCceeECCCCCCCCCCCCceEeCCC
Confidence 9999999999 9999999973 589999999998862 5788887656789875 999985
No 12
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A*
Probab=99.90 E-value=1.4e-25 Score=176.11 Aligned_cols=74 Identities=24% Similarity=0.478 Sum_probs=64.0
Q ss_pred CCCceEeeeeCCCCCCCCCcCCCCCCCCCcchhhhHHHHhhccCCCccCCCCCCccccccccceeeeccCCcCChHHHHH
Q 027258 55 AADFGIHGLWPEYKDGSYPSNCDPDSVFEKSQISDLISDLRQNWPTLSCPSNDGTKFWTHEWVKHGTCAESELDQREYFE 134 (226)
Q Consensus 55 ~~~ftIHGLWP~~~~~~~p~~C~~~~~~~~~~i~~l~~~L~~~Wp~~~~~~~~~~~fw~hEW~KHGtCs~~~~~~~~YF~ 134 (226)
..+||||||||++.++++|++|+ ..|+..++.+++++|++ |++.. ..||+|||+|||||+. ++|.+||+
T Consensus 24 ~~~FTIHGLWPdN~~gt~PsnC~--~~fd~~~I~dLl~~Ldk--PdL~~-----~~FWeHEWnKHGTCS~--ynQe~YFd 92 (165)
T 4dvk_A 24 GVNRSLHGIWPEKICTGVPSHLA--TDTELKAIHGMMDASEK--TNYTC-----CRLQRHEWNKHGWCNW--YNIEPWIL 92 (165)
T ss_dssp TCCEEEEEEECSCCCCSCCSSCC--CHHHHHTSTTCCCSCGG--GTSCS-----SHHHHHHHHHHTHHHH--SSHHHHHH
T ss_pred CCceEEEeeeCCCCCCCCccccC--cccchhhHHHHHHhhcC--CCCCc-----hHHHHHHHHcCCccCC--CCHHHHHH
Confidence 46999999999988889999997 56777778888889988 99853 2399999999999998 99999999
Q ss_pred HHHHH
Q 027258 135 AALKL 139 (226)
Q Consensus 135 ~al~L 139 (226)
.+.+.
T Consensus 93 L~~~a 97 (165)
T 4dvk_A 93 LMNKT 97 (165)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98654
No 13
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=84.89 E-value=0.43 Score=40.82 Aligned_cols=34 Identities=29% Similarity=0.359 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCC-CCCcccHHHHHHHHHHHhCCCc
Q 027258 145 LLQALKNAGIKP-DDGFYELESIIAAIKEATGFTP 178 (226)
Q Consensus 145 i~~~L~~~gI~P-~~~~~~~~~i~~al~~~~g~~p 178 (226)
-.++|+++|+.| +|+.++..++..|+.+++|..+
T Consensus 32 gLNaLANHGyLpR~G~nit~~~l~~al~~~~n~~~ 66 (299)
T 2ciw_A 32 ALNALANHGYIPHDGRAISRETLQNAFLNHMGIAN 66 (299)
T ss_dssp HHHHHHHTTSSCTTCEEECHHHHHHHHHHHHCBCH
T ss_pred HHHHHHhcCCcCCCCCccCHHHHHHHHHHhcCCCH
Confidence 356799999999 8888999999999999998754
No 14
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=45.93 E-value=4.7 Score=20.59 Aligned_cols=9 Identities=22% Similarity=0.826 Sum_probs=7.3
Q ss_pred eeccccccc
Q 027258 33 QQWPGSYCD 41 (226)
Q Consensus 33 l~Wpp~~C~ 41 (226)
.+|||+|+-
T Consensus 4 ~sWpPef~p 12 (22)
T 3ktp_B 4 INWPPEFHP 12 (26)
T ss_pred ccCCccccc
Confidence 589999984
No 15
>1dqi_A SOR, superoxide reductase; non-heme iron protein, immunoglobulin-like (IG) beta barrel fold, oxidoreductase; 1.70A {Pyrococcus furiosus} SCOP: b.1.13.1 PDB: 1do6_A 1dqk_A 2hvb_A
Probab=31.69 E-value=7.6 Score=28.72 Aligned_cols=9 Identities=56% Similarity=1.151 Sum_probs=6.6
Q ss_pred CceEeeeeC
Q 027258 57 DFGIHGLWP 65 (226)
Q Consensus 57 ~ftIHGLWP 65 (226)
.=+|||||=
T Consensus 110 YCNlHGLW~ 118 (124)
T 1dqi_A 110 YCNIHGLWE 118 (124)
T ss_dssp EETTTEEEE
T ss_pred EecccCCEE
Confidence 335899994
No 16
>1y07_A Desulfoferrodoxin (RBO); beta-sheet, iron binding, oxidoreductase; 1.55A {Treponema pallidum subsp}
Probab=29.83 E-value=8.6 Score=28.49 Aligned_cols=7 Identities=43% Similarity=1.531 Sum_probs=5.7
Q ss_pred eEeeeeC
Q 027258 59 GIHGLWP 65 (226)
Q Consensus 59 tIHGLWP 65 (226)
++||||=
T Consensus 120 NlHGLW~ 126 (128)
T 1y07_A 120 NLHGVWS 126 (128)
T ss_dssp TTTEEEE
T ss_pred cCcCcEE
Confidence 4899993
No 17
>1vzi_A Desulfoferrodoxin; ferrocyanide, microspectrophotometry, redox states, photoreduction, dinuclear iron cluster, oxidoreductase; 1.15A {Desulfovibrio baarsii} SCOP: b.1.13.1 g.41.5.2 PDB: 1vzh_A* 1vzg_A 2ji1_A 2ji2_A 2ji3_A 1dfx_A
Probab=29.72 E-value=8.7 Score=28.37 Aligned_cols=9 Identities=44% Similarity=0.929 Sum_probs=6.6
Q ss_pred CceEeeeeC
Q 027258 57 DFGIHGLWP 65 (226)
Q Consensus 57 ~ftIHGLWP 65 (226)
.=++||||=
T Consensus 115 YCNlHGLW~ 123 (126)
T 1vzi_A 115 YCNIHGHWK 123 (126)
T ss_dssp EETTTEEEE
T ss_pred EEcccceEE
Confidence 345899994
No 18
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=25.11 E-value=58 Score=21.28 Aligned_cols=26 Identities=15% Similarity=0.158 Sum_probs=18.8
Q ss_pred HHHHhCCCCCCCCcccHHHHHHHHHHHh-CC
Q 027258 147 QALKNAGIKPDDGFYELESIIAAIKEAT-GF 176 (226)
Q Consensus 147 ~~L~~~gI~P~~~~~~~~~i~~al~~~~-g~ 176 (226)
++|+.+ +=.++|..+|+.++.+.+ |.
T Consensus 23 ~IL~~a----DL~tvT~K~VR~~Le~~~pg~ 49 (70)
T 1q1v_A 23 KLLASA----NLEEVTMKQICKKVYENYPTY 49 (70)
T ss_dssp HHHTTS----CGGGCCHHHHHHHHHHHCSSS
T ss_pred HHHHhC----CHHHHhHHHHHHHHHHHccCC
Confidence 455555 335678999999999988 63
Done!