BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027260
(226 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4IXO|A Chain A, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
pdb|4IXO|B Chain B, X-ray Structure Of Nifs-like Protein From Rickettsia
Africae Esf-5
Length = 380
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
Query: 32 LPYIDDD---YADPRVKEEVDRMVEQEMRRSSKKPSD-FLKNL 70
+ Y+D + + DPRVKE + ++++E+ SS S F KNL
Sbjct: 9 MIYLDHNATTFIDPRVKEFIISLMDKELNPSSAHSSGRFAKNL 51
>pdb|3QN3|A Chain A, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|B Chain B, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|C Chain C, Phosphopyruvate Hydratase From Campylobacter Jejuni.
pdb|3QN3|D Chain D, Phosphopyruvate Hydratase From Campylobacter Jejuni
Length = 417
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 155 RERKYHQQNTAYELNALSTQWRELCAK 181
++ KYH + A+ AL ++ ELCAK
Sbjct: 250 KDGKYHMEGKAFSSEALIERYVELCAK 276
>pdb|1TU1|A Chain A, Crystal Structure Of Protein Of Unknown Function Pa94 From
Pseudomonas Aeruginosa, Putative Regulator
pdb|1TU1|B Chain B, Crystal Structure Of Protein Of Unknown Function Pa94 From
Pseudomonas Aeruginosa, Putative Regulator
Length = 148
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 97 PAVLDTTRYQLEILPANKRNDESAWKQALQ 126
PAVL TT L PA+ + E AWKQA+Q
Sbjct: 111 PAVLITT---LTTTPADLPHHEPAWKQAMQ 137
>pdb|1MDA|L Chain L, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
pdb|1MDA|M Chain M, Crystal Structure Of An Electron-Transfer Complex Between
Methylamine Dehydrogenase And Amicyanin
Length = 121
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 169 NALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNL 210
N T +R+ C N+ + AC N E + K+A + W
Sbjct: 62 NKYITAYRDCCGYNVSGRCACLNTEGELPVYNKDANDIIWCF 103
>pdb|3C6K|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6K|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermidine And 5-Methylthioadenosine
pdb|3C6M|A Chain A, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|B Chain B, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|C Chain C, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
pdb|3C6M|D Chain D, Crystal Structure Of Human Spermine Synthase In Complex
With Spermine And 5-Methylthioadenosine
Length = 381
Score = 28.1 bits (61), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 1 MASSSNNNGDILMLEAPPDAARPWNAEIIDALPYIDDDYADPRVKEEVDRM---VEQEMR 57
+A+ +N NG L P + + D D + KEE+D + VE+ M+
Sbjct: 63 LATYTNKNGSFANLRIYPHGLVLLDLQSYDG---------DAQGKEEIDSILNKVEERMK 113
Query: 58 RSSKKPSDFLKNLPPLSK 75
S+ + +K LPP+ +
Sbjct: 114 ELSQDSTGRVKRLPPIVR 131
>pdb|3KQG|A Chain A, Trimeric Structure Of Langerin
pdb|3KQG|B Chain B, Trimeric Structure Of Langerin
pdb|3KQG|C Chain C, Trimeric Structure Of Langerin
pdb|3KQG|D Chain D, Trimeric Structure Of Langerin
pdb|3KQG|E Chain E, Trimeric Structure Of Langerin
pdb|3KQG|F Chain F, Trimeric Structure Of Langerin
Length = 182
Score = 27.7 bits (60), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 8/80 (10%)
Query: 124 ALQKAQRLSQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNI 183
AL R Q L M +L + QN+ ++ V++ KY + N Y + + W
Sbjct: 20 ALNTKIRALQGSLENMSKLLKRQNDILQVVSQGWKYFKGNFYY-FSLIPKTW-------Y 71
Query: 184 EIQAACANIESHIEELRKEA 203
+ C + SH+ + E+
Sbjct: 72 SAEQFCVSRNSHLTSVTSES 91
>pdb|4ATM|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1 At 1.8 Angstrom Resolution Featuring Increased
Order At The N-Terminus
Length = 243
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 101 DTTRYQLEILPANKRNDESAWKQA---LQKAQRL 131
D+ R+ LE L ++KR DES +A QKAQ++
Sbjct: 147 DSARHHLEALQSSKRKDESRISKAEEEFQKAQKV 180
>pdb|3SOG|A Chain A, Crystal Structure Of The Bar Domain Of Human Amphiphysin,
Isoform 1
Length = 205
Score = 27.3 bits (59), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 101 DTTRYQLEILPANKRNDESAWKQA---LQKAQRL 131
D+ R+ LE L ++KR DES +A QKAQ++
Sbjct: 115 DSARHHLEALQSSKRKDESRISKAEEEFQKAQKV 148
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,432,901
Number of Sequences: 62578
Number of extensions: 239928
Number of successful extensions: 600
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 24
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)