BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027260
(226 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q949S9|SPF27_ARATH Pre-mRNA-splicing factor SPF27 homolog OS=Arabidopsis thaliana
GN=MOS4 PE=1 SV=1
Length = 253
Score = 299 bits (766), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 151/244 (61%), Positives = 182/244 (74%), Gaps = 33/244 (13%)
Query: 5 SNNNGDILMLEAPPDAARPW----NAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSS 60
+ NNGD+LMLEA P+AARPW NAE+IDALPYIDDDY +P +K EVDR+VE+EMRRSS
Sbjct: 2 ATNNGDVLMLEATPEAARPWASAANAEVIDALPYIDDDYGNPLIKSEVDRLVEEEMRRSS 61
Query: 61 KKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDT-TRYQLEILPANKRNDES 119
KKP+DFLK+LPPL KF F+N P+L KEYERVRAGKPP +D +RY+LE+ PANKRND++
Sbjct: 62 KKPADFLKDLPPLPKFDFKNCPVLGKEYERVRAGKPPVRIDFESRYKLEMPPANKRNDDA 121
Query: 120 AWKQALQKAQRLSQHQLI----------------------------RMQRLAQEQNEKIE 151
AWKQ LQK QR Q +LI RMQRLAQEQNE+IE
Sbjct: 122 AWKQYLQKNQRSLQQKLIELENLELMSKLGPELWRQNNHRLEVFLTRMQRLAQEQNEEIE 181
Query: 152 AVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLD 211
VNRERKYHQQ T+YELNALS +WR+LC KN+EIQ+ACA +E+ I+ +KEAAE GWNL+
Sbjct: 182 KVNRERKYHQQTTSYELNALSQEWRQLCVKNMEIQSACAMLETQIDSFKKEAAERGWNLE 241
Query: 212 IDME 215
+E
Sbjct: 242 EKLE 245
>sp|Q6PBE2|SPF27_XENTR Pre-mRNA-splicing factor SPF27 OS=Xenopus tropicalis GN=bcas2 PE=2
SV=1
Length = 223
Score = 70.9 bits (172), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 100/212 (47%), Gaps = 30/212 (14%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
++DALPY D Y V+E +VE+E RR + ++L LP FE M E
Sbjct: 12 VVDALPYFDQGYDAQGVREAAAALVEEETRRY-RPTKNYLSYLPTPDYSAFETEIM-RNE 69
Query: 88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL----- 142
+ER+ + +P +L RY+L + +RND +AW++ + + +HQ +R++ L
Sbjct: 70 FERLSSRQPLELLSMKRYELPAPLSGQRNDITAWQECVNNSMAQLEHQAVRIENLELMSQ 129
Query: 143 -----------------------AQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 179
Q+ +KI+ +N +RK Q L + + W L
Sbjct: 130 HGCNAWKVYNENLLHMIDCAQKDLQKLRKKIQDLNWQRKNSQLTAGARLREMESTWVSLV 189
Query: 180 AKNIEIQAACANIESHIEELRKEAAESGWNLD 211
+KN EI+ A +E+ + +L++ + E+ N++
Sbjct: 190 SKNYEIERAIVQMENEVYQLKERSGENKENIE 221
>sp|Q54SG7|SPF27_DICDI Pre-mRNA-splicing factor spf27 OS=Dictyostelium discoideum GN=spf27
PE=3 SV=2
Length = 226
Score = 68.6 bits (166), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 94/202 (46%), Gaps = 33/202 (16%)
Query: 26 AEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLA 85
AE ID+LPY+DD + +E +++++ EM S+ P D+L LP + N L
Sbjct: 8 AENIDSLPYVDDS-VNENEQELINKLISDEM--STFTPPDYLAQLPSFIDIDYNNFQFLE 64
Query: 86 KEYERVRAGKPPAVLDTTRYQLE--ILPANKRNDESAWKQALQKAQRLSQHQLIR----- 138
+++R+ + D RY++E ++ +E W +L A+ +HQ IR
Sbjct: 65 NDFKRMEKEEKMKEFDIGRYKVEPTTTMIKQQLNEKQWNDSLNNARSQLEHQDIRKINLE 124
Query: 139 -MQRLA----------------------QEQNEKIEAVNRERKYHQQNTAYELNALSTQW 175
+QR ++ ++IE +N +RK Q+ T ++ ++
Sbjct: 125 LLQRYGGNSWKLYLSDLEILQKTLKKQLDQKKQQIEEINIQRKLSQEQTFEKIQQHDKKF 184
Query: 176 RELCAKNIEIQAACANIESHIE 197
EL KN EI++AC +IE IE
Sbjct: 185 LELVYKNTEIESACKSIELEIE 206
>sp|Q5RAX7|SPF27_PONAB Pre-mRNA-splicing factor SPF27 OS=Pongo abelii GN=BCAS2 PE=2 SV=1
Length = 226
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 103/210 (49%), Gaps = 35/210 (16%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
++DALPY D Y P V+E +VE+E RR + ++L L P S F + ++
Sbjct: 12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67
Query: 86 KEYERVRAGKPPAVLDTTRYQLEILPAN-KRNDESAWKQALQKAQRLSQHQLIRMQRL-- 142
E+ER+ A +P +L RY+L P+ K+ND +AW++ + + +HQ +R++ L
Sbjct: 68 NEFERLAARQPIELLSMKRYELPAPPSGQKKNDITAWQECVNNSMAQLEHQAVRIENLEL 127
Query: 143 ----------------------AQEQNEK----IEAVNRERKYHQQNTAYELNALSTQWR 176
AQ++ +K I+ +N +RK Q +L + + W
Sbjct: 128 MSQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWV 187
Query: 177 ELCAKNIEIQAACANIESHIEELRKEAAES 206
L +KN EI+ +E+ I +++++ E+
Sbjct: 188 SLVSKNYEIERTIVQLENEIYQIKQQHGEA 217
>sp|Q9D287|SPF27_MOUSE Pre-mRNA-splicing factor SPF27 OS=Mus musculus GN=Bcas2 PE=2 SV=1
Length = 225
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 34/209 (16%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
++DALPY D Y P V+E +VE+E RR + ++L L P S F + ++
Sbjct: 12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67
Query: 86 KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL--- 142
E+ER+ A +P +L RY+L + ++ND +AW++ + + +HQ +R++ L
Sbjct: 68 NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127
Query: 143 ---------------------AQEQNEK----IEAVNRERKYHQQNTAYELNALSTQWRE 177
AQ++ +K I+ +N +RK Q +L + + W
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187
Query: 178 LCAKNIEIQAACANIESHIEELRKEAAES 206
L +KN EI+ +E+ I +++++ E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216
>sp|O75934|SPF27_HUMAN Pre-mRNA-splicing factor SPF27 OS=Homo sapiens GN=BCAS2 PE=1 SV=1
Length = 225
Score = 68.2 bits (165), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/209 (26%), Positives = 102/209 (48%), Gaps = 34/209 (16%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNL--PPLSKFRFENHPMLA 85
++DALPY D Y P V+E +VE+E RR + ++L L P S F + ++
Sbjct: 12 VVDALPYFDQGYEAPGVREAAAALVEEETRRY-RPTKNYLSYLTAPDYSAFETD---IMR 67
Query: 86 KEYERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL--- 142
E+ER+ A +P +L RY+L + ++ND +AW++ + + +HQ +R++ L
Sbjct: 68 NEFERLAARQPIELLSMKRYELPAPSSGQKNDITAWQECVNNSMAQLEHQAVRIENLELM 127
Query: 143 ---------------------AQEQNEK----IEAVNRERKYHQQNTAYELNALSTQWRE 177
AQ++ +K I+ +N +RK Q +L + + W
Sbjct: 128 SQHGCNAWKVYNENLVHMIEHAQKELQKLRKHIQDLNWQRKNMQLTAGSKLREMESNWVS 187
Query: 178 LCAKNIEIQAACANIESHIEELRKEAAES 206
L +KN EI+ +E+ I +++++ E+
Sbjct: 188 LVSKNYEIERTIVQLENEIYQIKQQHGEA 216
>sp|Q5RKQ0|SPF27_DANRE Pre-mRNA-splicing factor SPF27 OS=Danio rerio GN=bcas2 PE=2 SV=1
Length = 225
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/206 (25%), Positives = 95/206 (46%), Gaps = 30/206 (14%)
Query: 28 IIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPMLAKE 87
+DALPY D Y V+E +VE+E RR + ++L LP FE ++ E
Sbjct: 12 FVDALPYFDQGYDATGVREAAAALVEEETRRY-RPTKNYLSYLPTPDFSAFETE-IMRNE 69
Query: 88 YERVRAGKPPAVLDTTRYQLEILPANKRNDESAWKQALQKAQRLSQHQLIRMQRL----- 142
+ER+ A +P +L RY+L + ++ND +AW+ + + +HQ +R++ L
Sbjct: 70 FERLAARQPMELLSMKRYELPAPSSGQKNDMTAWQDCVNNSMAQLEHQAVRIENLELMAQ 129
Query: 143 -----------------------AQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELC 179
Q ++I+ +N +RK Q +L L + W L
Sbjct: 130 YGTNAWKMSNDNLALMIENSQKELQNVRKEIQDLNWQRKNDQLAGGAKLRELESNWVSLV 189
Query: 180 AKNIEIQAACANIESHIEELRKEAAE 205
+KN EI+ A +E+ + +++++ +
Sbjct: 190 SKNYEIERAIVQLENEVAQMKQQQGD 215
>sp|Q9XZ08|EXT3_DROME Exostosin-3 OS=Drosophila melanogaster GN=botv PE=1 SV=1
Length = 972
Score = 32.3 bits (72), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 57 RRSSKKPSDFLKNLPPLSKFRFENHPMLAKEYERVRAGKPPAVLDTTRYQLEILPANKRN 116
RR K S F LPPL+ R + MLA+ YE +R+G P +L + LP +
Sbjct: 472 RRQLLKDSTFSLILPPLNG-RVSSTLMLARIYEALRSGAVPVILGADELR---LPYAETV 527
Query: 117 DESAWKQALQKAQRLSQHQLIR 138
D L KA+ H L+R
Sbjct: 528 DWRRTALLLPKARITELHFLLR 549
>sp|E9Q414|APOB_MOUSE Apolipoprotein B-100 OS=Mus musculus GN=Apob PE=1 SV=1
Length = 4505
Score = 31.2 bits (69), Expect = 5.6, Method: Composition-based stats.
Identities = 25/112 (22%), Positives = 44/112 (39%), Gaps = 8/112 (7%)
Query: 24 WNAEIIDALPYIDDDYADPRVKEEVDRMVEQEMRRSSKKPSDFLKNLPPLSKFRFENHPM 83
WN E+ +++A + + E M+ + S F + E P
Sbjct: 3537 WNVEV-------GENFAGEATLQRIYTTWEHNMKNHLQVYSYFFTKGKQTCRATLELSPW 3589
Query: 84 LAKEYERVRAGKPPAVLDTTRYQLE-ILPANKRNDESAWKQALQKAQRLSQH 134
+V + ++LD + E IL AN +N + +WK +Q R+ QH
Sbjct: 3590 TMSTLLQVHVSQLSSLLDLHHFDQEVILKANTKNQKISWKGGVQVESRVLQH 3641
>sp|Q23064|UNC83_CAEEL Nuclear migration protein unc-83 OS=Caenorhabditis elegans
GN=unc-83 PE=1 SV=2
Length = 1041
Score = 30.8 bits (68), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 26 AEIIDALPYIDDDYADPRVKEEVDRMVEQE---MRRSSKKPSDFLKNLPPLSKFRFENHP 82
+I D L IDDD+A+ R++E+ +R K + N+P LS F
Sbjct: 654 TDISDQLMNIDDDFAEHFGTSSAIRLIEESKSHLRVVLKALEESDSNIPQLSNFELIARS 713
Query: 83 ML--AKEYERVRAGKPPAVLDTTRYQ 106
L E ++++G P+ L+T+ Q
Sbjct: 714 NLRQVDEALKIQSGNQPSFLETSTLQ 739
>sp|Q13464|ROCK1_HUMAN Rho-associated protein kinase 1 OS=Homo sapiens GN=ROCK1 PE=1 SV=1
Length = 1354
Score = 30.8 bits (68), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 141 RLAQEQNEKIEA-VNRER-KYHQQNTAY--ELNALSTQWRELCAKNIEIQAACANIESHI 196
R +++N K++ +N+ER K++Q + ELN + Q E CA E+Q A+ ES I
Sbjct: 1028 RKKEKENRKLQLELNQEREKFNQMVVKHQKELNDMQAQLVEECAHRNELQMQLASKESDI 1087
Query: 197 EELR 200
E+LR
Sbjct: 1088 EQLR 1091
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,143,888
Number of Sequences: 539616
Number of extensions: 3216173
Number of successful extensions: 11523
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 209
Number of HSP's that attempted gapping in prelim test: 11307
Number of HSP's gapped (non-prelim): 378
length of query: 226
length of database: 191,569,459
effective HSP length: 113
effective length of query: 113
effective length of database: 130,592,851
effective search space: 14756992163
effective search space used: 14756992163
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)