Query 027260
Match_columns 226
No_of_seqs 112 out of 189
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 11:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027260.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027260hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vmx_A Voltage-gated hydrogen 90.2 1.9 6.7E-05 28.3 7.5 44 165-208 3-46 (48)
2 3mq9_A Bone marrow stromal ant 89.8 6.2 0.00021 35.9 13.6 59 139-204 409-467 (471)
3 1gk7_A Vimentin; intermediate 86.3 1.4 4.7E-05 27.7 4.7 35 164-198 4-38 (39)
4 3a2a_A Voltage-gated hydrogen 86.2 2.5 8.4E-05 28.6 6.1 49 161-209 6-54 (58)
5 3mq9_A Bone marrow stromal ant 86.2 18 0.00061 32.8 14.2 20 186-205 442-461 (471)
6 3o0z_A RHO-associated protein 85.1 11 0.00037 30.9 10.8 62 139-201 15-76 (168)
7 3ol1_A Vimentin; structural ge 79.1 19 0.00064 27.4 10.4 84 118-201 15-104 (119)
8 3s4r_A Vimentin; alpha-helix, 77.4 4.9 0.00017 29.6 5.6 32 169-200 12-43 (93)
9 3viq_A SWI5-dependent recombin 77.0 13 0.00043 28.8 8.1 50 132-181 5-54 (122)
10 1wt6_A Myotonin-protein kinase 75.4 20 0.0007 25.8 9.3 59 137-203 17-75 (81)
11 2oqq_A Transcription factor HY 70.8 16 0.00053 23.3 5.8 36 168-203 5-40 (42)
12 1ci6_A Transcription factor AT 61.5 27 0.00092 23.6 6.2 37 166-202 23-59 (63)
13 1jnm_A Proto-oncogene C-JUN; B 60.3 27 0.00091 23.3 6.0 35 167-201 23-57 (62)
14 2dfs_A Myosin-5A; myosin-V, in 59.7 1.6E+02 0.0054 30.3 14.2 56 138-200 988-1043(1080)
15 1t2k_D Cyclic-AMP-dependent tr 58.7 35 0.0012 22.6 6.4 36 167-202 23-58 (61)
16 2hy6_A General control protein 53.6 20 0.0007 21.7 3.9 28 167-194 2-29 (34)
17 2v71_A Nuclear distribution pr 53.5 94 0.0032 25.6 13.2 89 118-206 72-173 (189)
18 1uo4_A General control protein 51.5 23 0.00079 21.4 3.9 27 167-193 2-28 (34)
19 3c3g_A Alpha/beta peptide with 50.5 37 0.0013 20.4 4.6 26 168-193 2-27 (33)
20 3i00_A HIP-I, huntingtin-inter 48.2 89 0.0031 23.8 10.2 63 139-201 20-82 (120)
21 3ghg_A Fibrinogen alpha chain; 47.4 74 0.0025 30.4 8.6 21 190-210 134-154 (562)
22 2eqb_B RAB guanine nucleotide 47.0 86 0.0029 23.3 8.9 67 139-205 24-94 (97)
23 2wq1_A General control protein 45.1 48 0.0017 19.9 4.6 26 168-193 2-27 (33)
24 3c3f_A Alpha/beta peptide with 42.7 54 0.0019 19.8 4.6 27 167-193 2-28 (34)
25 3m48_A General control protein 40.9 39 0.0013 20.3 3.7 25 168-192 2-26 (33)
26 3swk_A Vimentin; cytoskeleton, 40.5 97 0.0033 22.1 7.3 32 171-202 47-78 (86)
27 2dgc_A Protein (GCN4); basic d 37.1 94 0.0032 20.9 6.8 29 168-203 32-60 (63)
28 3lay_A Zinc resistance-associa 37.0 87 0.003 25.4 6.6 19 192-210 129-147 (175)
29 1sf9_A YFHH hypothetical prote 35.8 84 0.0029 24.4 5.9 49 128-176 18-68 (128)
30 3he5_B Synzip2; heterodimeric 35.2 88 0.003 20.0 6.2 36 170-205 7-42 (52)
31 1kd8_A GABH AIV, GCN4 acid bas 35.1 61 0.0021 19.8 4.0 27 168-194 3-29 (36)
32 1fmh_A General control protein 34.6 70 0.0024 18.7 4.2 20 184-203 12-31 (33)
33 2bni_A General control protein 33.9 64 0.0022 19.5 3.9 26 167-192 2-27 (34)
34 3m91_A Proteasome-associated A 31.8 1.1E+02 0.0037 20.0 6.9 43 165-207 8-50 (51)
35 2yxy_A Hypothetical conserved 31.0 67 0.0023 24.6 4.6 33 144-176 17-50 (115)
36 1jnm_A Proto-oncogene C-JUN; B 30.3 1.2E+02 0.004 20.0 5.4 36 172-207 21-56 (62)
37 3vp9_A General transcriptional 30.1 1.6E+02 0.0055 21.5 8.7 30 181-210 58-91 (92)
38 2v71_A Nuclear distribution pr 29.5 2.4E+02 0.0081 23.2 15.0 34 163-196 92-125 (189)
39 2v66_B Nuclear distribution pr 28.1 1.9E+02 0.0066 21.8 11.9 71 117-187 18-98 (111)
40 2oxj_A Hybrid alpha/beta pepti 27.2 1.1E+02 0.0037 18.5 4.6 25 168-192 3-27 (34)
41 1kd8_B GABH BLL, GCN4 acid bas 27.0 1.1E+02 0.0038 18.6 5.1 27 167-193 2-28 (36)
42 1gd2_E Transcription factor PA 26.9 1.6E+02 0.0054 20.3 9.1 38 167-204 30-67 (70)
43 3he5_A Synzip1; heterodimeric 26.7 1.2E+02 0.0042 19.1 6.9 37 166-202 10-46 (49)
44 2wt7_A Proto-oncogene protein 26.7 1.4E+02 0.0048 19.7 8.0 36 167-202 24-59 (63)
45 1go4_E MAD1 (mitotic arrest de 26.1 2E+02 0.0069 21.3 6.6 46 174-219 13-58 (100)
46 3s4r_A Vimentin; alpha-helix, 25.7 1.9E+02 0.0064 20.8 11.5 37 166-202 56-92 (93)
47 1uuj_A Platelet-activating fac 25.4 23 0.00079 25.9 1.0 27 170-196 52-81 (88)
48 3mq7_A Bone marrow stromal ant 25.0 2.3E+02 0.008 21.7 13.0 79 126-204 24-109 (121)
49 1hjb_A Ccaat/enhancer binding 24.8 2E+02 0.0067 20.7 8.5 52 155-206 17-69 (87)
50 1zke_A Hypothetical protein HP 22.8 2.1E+02 0.0072 20.4 5.8 20 139-158 57-76 (83)
51 2v66_B Nuclear distribution pr 22.3 2.5E+02 0.0087 21.1 11.4 62 133-194 9-70 (111)
52 2r2v_A GCN4 leucine zipper; co 20.7 1.5E+02 0.0051 17.8 4.6 26 167-192 2-27 (34)
53 3m9b_A Proteasome-associated A 20.7 1E+02 0.0036 26.5 4.4 43 165-207 53-95 (251)
54 3na7_A HP0958; flagellar bioge 20.1 3.8E+02 0.013 22.2 13.0 35 165-202 131-165 (256)
No 1
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=90.21 E-value=1.9 Score=28.28 Aligned_cols=44 Identities=23% Similarity=0.301 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 027260 165 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGW 208 (226)
Q Consensus 165 g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~ 208 (226)
-.+|..|.+-.-.++.|+-+++--|.++++||.+|++=...-|.
T Consensus 3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHgl 46 (48)
T 3vmx_A 3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcCC
Confidence 34677888889999999999999999999999999987666554
No 2
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=89.79 E-value=6.2 Score=35.86 Aligned_cols=59 Identities=12% Similarity=0.105 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAA 204 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~ 204 (226)
+++.+..++++...+|+.=-.-| .+|+.+-.+...|.-|+|..+..|+.+|..++.+-.
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 467 (471)
T 3mq9_A 409 AQKGFQDVEAQAATANHTVMALM-------ASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVE 467 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcchhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444554433333 456666666666777777777777777776666543
No 3
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=86.27 E-value=1.4 Score=27.66 Aligned_cols=35 Identities=14% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 164 TAYELNALSTQWRELCAKNIEIQAACANIESHIEE 198 (226)
Q Consensus 164 ~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~ 198 (226)
-..++..|..++..++.|+-.+|..+..|+.+|..
T Consensus 4 EKe~mq~LNdrlAsyidkVR~LE~~N~~Le~~i~~ 38 (39)
T 1gk7_A 4 EKVELQELNDRFANYIDKVRFLEQQNKILLAELEQ 38 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999998853
No 4
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=86.24 E-value=2.5 Score=28.60 Aligned_cols=49 Identities=24% Similarity=0.293 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 027260 161 QQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESGWN 209 (226)
Q Consensus 161 Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~~ 209 (226)
++.+..++..|.+-=..++.|+-++|.-|.+.++||.+|.+=.++-|+.
T Consensus 6 ktRse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHgl~ 54 (58)
T 3a2a_A 6 KTRSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHGLL 54 (58)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 3445556677788888999999999999999999999999988887765
No 5
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=86.20 E-value=18 Score=32.79 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027260 186 QAACANIESHIEELRKEAAE 205 (226)
Q Consensus 186 E~A~~~Le~ei~~lr~~~~~ 205 (226)
+.-+.+||+||..+.++...
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~ 461 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQD 461 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34467788888877776544
No 6
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.09 E-value=11 Score=30.89 Aligned_cols=62 Identities=15% Similarity=0.190 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK 201 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~ 201 (226)
|...-..+|.+.|.+.+.||. |.+....+..+|..-+++..++-.++.+...|+.++..|..
T Consensus 15 L~E~n~kLk~EsE~~~rlkK~-~tEl~k~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 15 LEEANDLLRTESDTAVRLRKS-HTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445668888888888874 77888889999999999999999999999998888877665
No 7
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=79.12 E-value=19 Score=27.37 Aligned_cols=84 Identities=10% Similarity=0.222 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 118 ESAWKQALQKAQRLSQHQ---LIRMQRLAQEQNEKIEAVNRERK---YHQQNTAYELNALSTQWRELCAKNIEIQAACAN 191 (226)
Q Consensus 118 ~~aW~~al~nA~aqLehq---~~Rlek~L~~~k~~ie~VN~~RK---~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~ 191 (226)
...+...|.+.+.++.-. ..|++-++..++..+++.-..=. ..-..+...|..|..---+.--..+++|.-++.
T Consensus 15 ~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~ies 94 (119)
T 3ol1_A 15 GDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVES 94 (119)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHH
Confidence 344555666666555433 33455555555555555421100 001223344444444433434445666667777
Q ss_pred HHHHHHHHHH
Q 027260 192 IESHIEELRK 201 (226)
Q Consensus 192 Le~ei~~lr~ 201 (226)
|..||.-+|+
T Consensus 95 L~eEl~FLKk 104 (119)
T 3ol1_A 95 LQEEIAFLKK 104 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 8
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=77.39 E-value=4.9 Score=29.56 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 169 NALSTQWRELCAKNIEIQAACANIESHIEELR 200 (226)
Q Consensus 169 ~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr 200 (226)
..|..+...+|.|+-.+|..+..|+.+|..++
T Consensus 12 q~LNdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 12 QELNDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444444444444444444444444333
No 9
>3viq_A SWI5-dependent recombination DNA repair protein 1; recombination activator; 2.20A {Schizosaccharomyces pombe}
Probab=77.04 E-value=13 Score=28.77 Aligned_cols=50 Identities=14% Similarity=0.357 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 027260 132 SQHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAK 181 (226)
Q Consensus 132 Lehq~~Rlek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~k 181 (226)
|--...+|++++..++++++.+....|.....-..+|..|=.+|+.-...
T Consensus 5 L~~~~~~L~~~i~~l~~~L~~lkqa~k~~~~~~~~eL~~LI~KWr~asq~ 54 (122)
T 3viq_A 5 LLSRRLKLEKEVRNLQEQLITAETARKVEAKNEDKDLQTLIQKWKNAAQQ 54 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 33344559999999999999999999999999999999999999986664
No 10
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=75.36 E-value=20 Score=25.84 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 137 IRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 203 (226)
Q Consensus 137 ~Rlek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~ 203 (226)
..|+.++....--.+++++-|-..+ .++.+-++...+|-+++.-...|+.++.+|+..+
T Consensus 17 SALeaEIqAKQ~i~EELs~vr~~ni--------~~eskL~eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 17 EALEEEVLTRQSLSREMEAIRTDNQ--------NFASQLREAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3488888888888888887775544 4445555666667777777788888888876543
No 11
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=70.82 E-value=16 Score=23.26 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 203 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~ 203 (226)
+..||.+-+++-.+|-++|--+-.|++|-.-||+..
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 568999999999999999999999999999888753
No 12
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.52 E-value=27 Score=23.58 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 166 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 166 ~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
.....|+.+-.++-..|-+++.-+..|+.||..|+.-
T Consensus 23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888899999999999999999999988764
No 13
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.34 E-value=27 Score=23.33 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIESHIEELRK 201 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~ 201 (226)
.+..|+.+...+-..|-++..-+..|+.|+..|+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777776666666666666666554
No 14
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.71 E-value=1.6e+02 Score=30.32 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 138 RMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELR 200 (226)
Q Consensus 138 Rlek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr 200 (226)
.|+.+++.++++++..+++.+..+.........|+.+-. .++-++..|+.++.++.
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~-------~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVS-------ELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 388888888888888888887776655444444553333 44444455555555444
No 15
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=58.69 E-value=35 Score=22.59 Aligned_cols=36 Identities=14% Similarity=0.257 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
.+..|+.+-..+-..|-++...+..|+.|+..|+..
T Consensus 23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788898999999999999999999999888764
No 16
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=53.63 E-value=20 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIES 194 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le~ 194 (226)
++..||.+-.+++++|.+++.+...|+.
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3567888889999988777666665553
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=53.52 E-value=94 Score=25.64 Aligned_cols=89 Identities=17% Similarity=0.202 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 118 ESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVN-RERKYHQQN---------TAYELNALSTQWRELCAKNIEIQA 187 (226)
Q Consensus 118 ~~aW~~al~nA~aqLehq~~Rlek~L~~~k~~ie~VN-~~RK~~Q~~---------~g~~L~~LE~~W~~lv~knleiE~ 187 (226)
...|+.-+.+++.++..+.+.|++++..++...+.+- +-|+..|.+ +...|..++.+....|-+|.=+|.
T Consensus 72 ~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~ 151 (189)
T 2v71_A 72 VEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLES 151 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666655554443 223333332 223344455555555555544443
Q ss_pred HHH---HHHHHHHHHHHHHHHc
Q 027260 188 ACA---NIESHIEELRKEAAES 206 (226)
Q Consensus 188 A~~---~Le~ei~~lr~~~~~~ 206 (226)
... .|+.++.+||.+...+
T Consensus 152 El~EKe~l~~~~QRLkdE~rDL 173 (189)
T 2v71_A 152 ELDEKESLLVSVQRLKDEARDL 173 (189)
T ss_dssp HHHHHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2333344444444433
No 18
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=51.45 E-value=23 Score=21.45 Aligned_cols=27 Identities=19% Similarity=0.278 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIE 193 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le 193 (226)
.+..||.+-.+++++|.++|-....|+
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 356789999999998877665554443
No 19
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=50.48 E-value=37 Score=20.38 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANIE 193 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~Le 193 (226)
+..||.+-.+++++|.++|.....|+
T Consensus 2 MnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 56789999999998876655444443
No 20
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=48.22 E-value=89 Score=23.83 Aligned_cols=63 Identities=14% Similarity=0.213 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEELRK 201 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~ 201 (226)
|..++..++.+++.+-..-..........+..|+..-...=.-.-+.-+.|..|+.++..++.
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l~~ 82 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDELRR 82 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777666666666666777667666555444344445567778887777654
No 21
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=47.43 E-value=74 Score=30.44 Aligned_cols=21 Identities=0% Similarity=0.036 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCc
Q 027260 190 ANIESHIEELRKEAAESGWNL 210 (226)
Q Consensus 190 ~~Le~ei~~lr~~~~~~~~~~ 210 (226)
..|+.-|++++.+.++|-.+|
T Consensus 134 rvLQsnLedq~~kIQRLEvDI 154 (562)
T 3ghg_A 134 QLLQKNVRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444454444443333
No 22
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=46.95 E-value=86 Score=23.25 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERKYHQQN---TAYELNALSTQWRELCAKNI-EIQAACANIESHIEELRKEAAE 205 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK~~Q~~---~g~~L~~LE~~W~~lv~knl-eiE~A~~~Le~ei~~lr~~~~~ 205 (226)
.+.++..+...+.+-...|...... +..+|..|-..-.+--.+.+ .-..++..++..+.+|+.+...
T Consensus 24 ~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 24 RDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5556666665555555555443322 22333333333222222211 1234445555556666665443
No 23
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.08 E-value=48 Score=19.88 Aligned_cols=26 Identities=15% Similarity=0.061 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANIE 193 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~Le 193 (226)
+..||.+-.++++++.+++.....|+
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 56789999999998877665544443
No 24
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=42.69 E-value=54 Score=19.77 Aligned_cols=27 Identities=7% Similarity=0.118 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIE 193 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le 193 (226)
.+..||.+-.+++++|.++|.....|+
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 356789999999998776655444443
No 25
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=40.91 E-value=39 Score=20.31 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANI 192 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~L 192 (226)
+..||.+-.+++++|.+++.....|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4568888888888776554444433
No 26
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=40.54 E-value=97 Score=22.05 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 171 LSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 171 LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
.|..+..+-.-.=+.-.+...||++|..|+.+
T Consensus 47 ~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 47 AENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333444445555555555544
No 27
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.12 E-value=94 Score=20.87 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANIESHIEELRKEA 203 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~ 203 (226)
+..|+.+...+ +..+..|+.+|..|+...
T Consensus 32 ~~~Le~~v~~L-------~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEEL-------LSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHH-------HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 44555555554 445566677777776643
No 28
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=36.99 E-value=87 Score=25.38 Aligned_cols=19 Identities=11% Similarity=0.104 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHcCCCc
Q 027260 192 IESHIEELRKEAAESGWNL 210 (226)
Q Consensus 192 Le~ei~~lr~~~~~~~~~~ 210 (226)
|..+-.+.+.+.++.||+.
T Consensus 129 L~~~R~k~~~em~KeGip~ 147 (175)
T 3lay_A 129 LDEQRVKRDVAMAQAGIPR 147 (175)
T ss_dssp HHHHHHHHHHHHHHTTCC-
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3333344555666669986
No 29
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=35.76 E-value=84 Score=24.43 Aligned_cols=49 Identities=22% Similarity=0.196 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHH
Q 027260 128 AQRLSQHQLIRMQR-LAQEQNEKIEAVN-RERKYHQQNTAYELNALSTQWR 176 (226)
Q Consensus 128 A~aqLehq~~Rlek-~L~~~k~~ie~VN-~~RK~~Q~~~g~~L~~LE~~W~ 176 (226)
.|-|...+..|+.. ...+++.+|..++ +.||..|.-.-.+..-++++|.
T Consensus 18 ~~~~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~Gi~NE~aV~erKi~ 68 (128)
T 1sf9_A 18 LYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKIT 68 (128)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred eeeecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 34444443444222 2346777788777 6899999999999999998874
No 30
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=35.16 E-value=88 Score=19.98 Aligned_cols=36 Identities=28% Similarity=0.362 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 170 ALSTQWRELCAKNIEIQAACANIESHIEELRKEAAE 205 (226)
Q Consensus 170 ~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~ 205 (226)
+|..+...+...|+++|..-..|+.=|..||.+.+.
T Consensus 7 ylrkkiarlkkdnlqlerdeqnlekiianlrdeiar 42 (52)
T 3he5_B 7 YLRKKIARLKKDNLQLERDEQNLEKIIANLRDEIAR 42 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHH
Confidence 455555556666777777666666666666555443
No 31
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=35.14 E-value=61 Score=19.80 Aligned_cols=27 Identities=15% Similarity=0.276 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANIES 194 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~Le~ 194 (226)
+..||.+-.+++++|.++|.....|+.
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ 29 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456777777777777665555444443
No 32
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=34.59 E-value=70 Score=18.68 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027260 184 EIQAACANIESHIEELRKEA 203 (226)
Q Consensus 184 eiE~A~~~Le~ei~~lr~~~ 203 (226)
+-|..+-+|++|+.+|..++
T Consensus 12 qaeaenyqleqevaqlehec 31 (33)
T 1fmh_A 12 QAEAENYQLEQEVAQLEHEC 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHHHHHHHHhc
Confidence 33444445555555555543
No 33
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=33.88 E-value=64 Score=19.48 Aligned_cols=26 Identities=19% Similarity=0.288 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANI 192 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~L 192 (226)
.+..||.+-.+++++|-+++.....|
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RL 27 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARI 27 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHH
Confidence 35678888888998876655444443
No 34
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=31.77 E-value=1.1e+02 Score=19.98 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 027260 165 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 207 (226)
Q Consensus 165 g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~ 207 (226)
..+++.|..+=..+-.+|-.+..++..-+.+|..|+.+-.+++
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La 50 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 50 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455667777777778888888899999999999988766553
No 35
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=30.99 E-value=67 Score=24.56 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHH
Q 027260 144 QEQNEKIEAVN-RERKYHQQNTAYELNALSTQWR 176 (226)
Q Consensus 144 ~~~k~~ie~VN-~~RK~~Q~~~g~~L~~LE~~W~ 176 (226)
.+++.+|..++ +.||..|.-.-.+..-++++|.
T Consensus 17 ~EL~~EI~~L~ekarKAEq~G~~nE~aV~erK~~ 50 (115)
T 2yxy_A 17 EELQQEIAMLTEKARKAEQMGMVNEYAVYERKIA 50 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 35666777776 6899999999999988888874
No 36
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=30.27 E-value=1.2e+02 Score=20.00 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 027260 172 STQWRELCAKNIEIQAACANIESHIEELRKEAAESG 207 (226)
Q Consensus 172 E~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~ 207 (226)
.....++-.++-+++..+..|..+|..|+.+...+-
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777788889999999999999998876653
No 37
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=30.07 E-value=1.6e+02 Score=21.50 Aligned_cols=30 Identities=13% Similarity=0.197 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHcCCCc
Q 027260 181 KNIEIQAACANI----ESHIEELRKEAAESGWNL 210 (226)
Q Consensus 181 knleiE~A~~~L----e~ei~~lr~~~~~~~~~~ 210 (226)
+++++|.+-..+ |.||..||++...+|-.+
T Consensus 58 tvyeLE~~h~kmKq~YEeEI~rLr~eLe~r~~q~ 91 (92)
T 3vp9_A 58 TVYERELTHRKMKDAYEEEIKHLKLGLEQRDHQI 91 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 345555554444 567888888877666543
No 38
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=29.49 E-value=2.4e+02 Score=23.20 Aligned_cols=34 Identities=15% Similarity=0.063 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 163 NTAYELNALSTQWRELCAKNIEIQAACANIESHI 196 (226)
Q Consensus 163 ~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei 196 (226)
....++..|...-..+-.+..++|+++-.|++..
T Consensus 92 ~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 92 VLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3344444455555555555556666665555443
No 39
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=28.15 E-value=1.9e+02 Score=21.75 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=46.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q 027260 117 DESAWKQALQKAQRLSQHQLIRMQRLAQEQNEKIEAVN-RERKYHQQN---------TAYELNALSTQWRELCAKNIEIQ 186 (226)
Q Consensus 117 d~~aW~~al~nA~aqLehq~~Rlek~L~~~k~~ie~VN-~~RK~~Q~~---------~g~~L~~LE~~W~~lv~knleiE 186 (226)
+++.|+.=+..++.....+.+.|++++..++..-+.+- .-|+..|.+ +..-|..++.+...-|-+|.=+|
T Consensus 18 E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~aiErnalLE 97 (111)
T 2v66_B 18 EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQAIERNAFLE 97 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46789988888888777777778888888877766654 346666643 23344555555555555554443
Q ss_pred H
Q 027260 187 A 187 (226)
Q Consensus 187 ~ 187 (226)
.
T Consensus 98 ~ 98 (111)
T 2v66_B 98 S 98 (111)
T ss_dssp H
T ss_pred H
Confidence 3
No 40
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=27.17 E-value=1.1e+02 Score=18.48 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 168 LNALSTQWRELCAKNIEIQAACANI 192 (226)
Q Consensus 168 L~~LE~~W~~lv~knleiE~A~~~L 192 (226)
+..||.+-.+++.+|-+++.....|
T Consensus 3 MnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5678888888888765544433333
No 41
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=26.99 E-value=1.1e+02 Score=18.62 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIE 193 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le 193 (226)
++..||.+-.+++++|.+++.....|+
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk 28 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLK 28 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 356788888888888766555444444
No 42
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=26.90 E-value=1.6e+02 Score=20.33 Aligned_cols=38 Identities=21% Similarity=0.216 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAA 204 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~ 204 (226)
.|..||.+-.++-..+-.+...+..|+.+|..|..+-.
T Consensus 30 ~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 30 HLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555556666777777777766544
No 43
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=26.74 E-value=1.2e+02 Score=19.06 Aligned_cols=37 Identities=30% Similarity=0.376 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 166 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 166 ~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
.+..+||..=..+-.+|+--.--+.-|+.||..+|.+
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlrkk 46 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLRKK 46 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666677777777765
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=26.71 E-value=1.4e+02 Score=19.74 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
.+..|+.+...+-..|-++...+..|+.|+..|+..
T Consensus 24 ~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 24 LTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888888888888888888888754
No 45
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=26.09 E-value=2e+02 Score=21.28 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccc
Q 027260 174 QWRELCAKNIEIQAACANIESHIEELRKEAAESGWNLDIDMEKGFL 219 (226)
Q Consensus 174 ~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~~~~~~~~~~~~~ 219 (226)
.|..+-.+.-+++..|..|+.++..|..+...+-.-=|.++.+.++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKV 58 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKV 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCee
Confidence 6666677777788888999988888888877755444555554443
No 46
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.74 E-value=1.9e+02 Score=20.81 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 166 YELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 166 ~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
..|..|...-.++...+-.++..+..|..++.++|.+
T Consensus 56 ~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~K 92 (93)
T 3s4r_A 56 EEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREK 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4444455555555555555555555566666666553
No 47
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=25.36 E-value=23 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.402 Sum_probs=14.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q 027260 170 ALSTQWRELC---AKNIEIQAACANIESHI 196 (226)
Q Consensus 170 ~LE~~W~~lv---~knleiE~A~~~Le~ei 196 (226)
-||.+|..-| .|++++|.-+.+|+.|+
T Consensus 52 LLEKKWTSViRLQKKImdLE~~~~~l~~el 81 (88)
T 1uuj_A 52 LLEKKWTSVIRLQKKVMELESKLNEAKEEF 81 (88)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999998554 33444454444444443
No 48
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=25.00 E-value=2.3e+02 Score=21.66 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 126 QKAQRLSQHQLIRMQ-------RLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIESHIEE 198 (226)
Q Consensus 126 ~nA~aqLehq~~Rle-------k~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~ 198 (226)
.|.---|+|+.+|.+ .+....++-+..++..=+..+.....++..|+..-..+-.+--+.+...++|+.+...
T Consensus 24 rN~T~lLq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~ 103 (121)
T 3mq7_A 24 RNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQV 103 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchh
Confidence 344445677777733 3334445555555544444444444455566665555555444455555555555555
Q ss_pred HHHHHH
Q 027260 199 LRKEAA 204 (226)
Q Consensus 199 lr~~~~ 204 (226)
+..+..
T Consensus 104 ~~~r~~ 109 (121)
T 3mq7_A 104 LSVRIA 109 (121)
T ss_dssp HHHHHC
T ss_pred hhhHhh
Confidence 554433
No 49
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=24.76 E-value=2e+02 Score=20.69 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027260 155 RERKYHQQNTAYELNA-LSTQWRELCAKNIEIQAACANIESHIEELRKEAAES 206 (226)
Q Consensus 155 ~~RK~~Q~~~g~~L~~-LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~ 206 (226)
+.|...-..+..+-+. =..+=.++-.++.+++..+..|+.+|.+|+.+...+
T Consensus 17 ~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~L 69 (87)
T 1hjb_A 17 KIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTL 69 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 50
>1zke_A Hypothetical protein HP1531; layer of helix-turn-helix, structural G PSI, protein structure initiative, midwest center for struc genomics; 1.60A {Helicobacter pylori} SCOP: a.30.6.1
Probab=22.82 E-value=2.1e+02 Score=20.38 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERK 158 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK 158 (226)
+..++.++|+.|+.+|+..|
T Consensus 57 ideeV~~LKe~IdaLNK~Kk 76 (83)
T 1zke_A 57 LSEEVERLKELINALNKIKK 76 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67789999999999998765
No 51
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=22.27 E-value=2.5e+02 Score=21.08 Aligned_cols=62 Identities=16% Similarity=0.102 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 133 QHQLIRMQRLAQEQNEKIEAVNRERKYHQQNTAYELNALSTQWRELCAKNIEIQAACANIES 194 (226)
Q Consensus 133 ehq~~Rlek~L~~~k~~ie~VN~~RK~~Q~~~g~~L~~LE~~W~~lv~knleiE~A~~~Le~ 194 (226)
.-...||..++...|...+.....--..+.....+|..|...-..+..+.-++|+++-.||+
T Consensus 9 ~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER 70 (111)
T 2v66_B 9 QADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLER 70 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 33345566777777777776666666666667777777777777777777777777776664
No 52
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.73 E-value=1.5e+02 Score=17.84 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 167 ELNALSTQWRELCAKNIEIQAACANI 192 (226)
Q Consensus 167 ~L~~LE~~W~~lv~knleiE~A~~~L 192 (226)
++..||.+-.+++++++.++-....|
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46778888899999887765544444
No 53
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=20.65 E-value=1e+02 Score=26.52 Aligned_cols=43 Identities=21% Similarity=0.349 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 027260 165 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKEAAESG 207 (226)
Q Consensus 165 g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~~~~~~ 207 (226)
...++.|+.+-..+-.+|--+..+...++.||..||.+-..+.
T Consensus 53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~ 95 (251)
T 3m9b_A 53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG 95 (251)
T ss_dssp CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456777777777777777788888999999999998877654
No 54
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.08 E-value=3.8e+02 Score=22.23 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 165 AYELNALSTQWRELCAKNIEIQAACANIESHIEELRKE 202 (226)
Q Consensus 165 g~~L~~LE~~W~~lv~knleiE~A~~~Le~ei~~lr~~ 202 (226)
...+..++....... -+++.+...++.++..+..+
T Consensus 131 ~~~l~~~~~~l~~~~---~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 131 KKEMLELEKLALELE---SLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 334444444443333 35555566666666655443
Done!