Query 027260
Match_columns 226
No_of_seqs 112 out of 189
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 11:45:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027260.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027260hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sf9a_ b.34.15.1 (A:) Hypothe 47.8 20 0.0015 25.7 5.9 50 127-176 7-58 (118)
2 d1uuja_ a.221.1.1 (A:) Lissenc 23.4 22 0.0016 23.6 2.3 63 124-198 9-73 (76)
3 d1hcia4 a.7.1.1 (A:633-746) al 23.3 77 0.0056 20.8 5.5 47 139-185 49-102 (114)
4 d1lvfa_ a.47.2.1 (A:) Syntaxin 21.0 81 0.0059 21.3 5.2 39 165-203 15-65 (106)
5 d1u5pa2 a.7.1.1 (A:1772-1872) 19.3 1E+02 0.0075 19.2 6.7 44 139-182 43-93 (101)
6 d1zkea1 a.30.6.1 (A:1-79) Hypo 18.8 44 0.0032 22.0 3.0 20 139-158 55-74 (79)
7 d1s35a2 a.7.1.1 (A:1169-1273) 17.0 1.2E+02 0.0089 19.1 7.9 44 139-182 45-95 (105)
8 d1knqa_ c.37.1.17 (A:) Glucona 14.9 33 0.0024 23.6 1.8 19 5-23 2-20 (171)
9 d1io1a_ e.32.1.1 (A:) Phase 1 12.0 1.8E+02 0.013 21.7 5.8 15 139-153 56-70 (395)
10 d1wjta_ a.48.3.1 (A:) Transcri 11.1 75 0.0054 21.6 2.7 30 151-180 57-87 (103)
No 1
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=47.77 E-value=20 Score=25.69 Aligned_cols=50 Identities=22% Similarity=0.197 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHH
Q 027260 127 KAQRLSQHQLIRMQR-LAQEQNEKIEAVN-RERKYHQQNTAYELNALSTQWR 176 (226)
Q Consensus 127 nA~aqLehq~~Rlek-~L~~~k~~ie~VN-~~RK~~Q~~~g~~L~~LE~~W~ 176 (226)
|.|-|...+..|+.. ...+++.+|..++ +.||..|.-.-.++.-++++|.
T Consensus 7 ~~~~~~~~m~krySeMs~~EL~~EIa~L~EKaRKAEq~GivnE~aV~erK~~ 58 (118)
T d1sf9a_ 7 NLYFQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGIINELAVLERKIT 58 (118)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ceeeecchhhHHHHhcCHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHH
Confidence 344444444444222 2457788888887 7899999999999999999884
No 2
>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.35 E-value=22 Score=23.56 Aligned_cols=63 Identities=14% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 124 ALQKAQRLSQHQLIR-MQRLAQEQNEKIEAVNRERKYHQQNTAYEL-NALSTQWRELCAKNIEIQAACANIESHIEE 198 (226)
Q Consensus 124 al~nA~aqLehq~~R-lek~L~~~k~~ie~VN~~RK~~Q~~~g~~L-~~LE~~W~~lv~knleiE~A~~~Le~ei~~ 198 (226)
-|+.| -+.|+... +.+.+..++++.+ ++ .-.....+- .-||.+|...| -+..-+..||.++.+
T Consensus 9 eL~ka--I~~Yl~~~~~~~~~~~l~~e~~-l~-----~~~~~~~ky~glLEKKWtSVi----RLQkKImdLE~~~~~ 73 (76)
T d1uuja_ 9 ELNRA--IADYLRSNGYEEAYSVFKKEAE-LD-----MNEELDKKYAGLLEKKWTSVI----RLQKKVMELESKLNE 73 (76)
T ss_dssp HHHHH--HHHHHHHTTCHHHHHHHHHHTT-CC-----CCHHHHHHHTTHHHHHHTCHH----HHHHHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHCCcHHHHHHHHHHHC-CC-----CChhhhhhhcCcchhHHHHHH----HHHHHHHHHHHHHHH
Confidence 44444 34666544 5556666666541 11 001111111 14999995433 344444444444443
No 3
>d1hcia4 a.7.1.1 (A:633-746) alpha-actinin {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.29 E-value=77 Score=20.79 Aligned_cols=47 Identities=13% Similarity=0.283 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERKYHQ-------QNTAYELNALSTQWRELCAKNIEI 185 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK~~Q-------~~~g~~L~~LE~~W~~lv~knlei 185 (226)
+++++......|+.|+..=+.-. ..+..++..|..+|..+....-..
T Consensus 49 ~e~el~~~~~~i~~l~~~g~~L~~~~~~~~~~i~~~~~~L~~~W~~L~~~~~~R 102 (114)
T d1hcia4 49 YEHNIINYKNNIDKLEGDHQLIQEALVFDNKHTNYTMEHIRVGWELLLTTIART 102 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776554433 345678999999999999865544
No 4
>d1lvfa_ a.47.2.1 (A:) Syntaxin 6, SNAP-25 homolog {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.00 E-value=81 Score=21.30 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHH
Q 027260 165 AYELNALSTQWRELCA------------KNIEIQAACANIESHIEELRKEA 203 (226)
Q Consensus 165 g~~L~~LE~~W~~lv~------------knleiE~A~~~Le~ei~~lr~~~ 203 (226)
..++.+|-++|..+.. -.-++..+|..++-++.+|.+--
T Consensus 15 ~~~~~~l~~~w~~~~~~~~~~~~~e~~~~~~eL~~~l~siewdL~dLe~av 65 (106)
T d1lvfa_ 15 VNTAQGLFQRWTELLQGPSAATREEIDWTTNELRNNLRSIEWDLEDLDETI 65 (106)
T ss_dssp HHHHHHHHHHHHHHTTCTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4455666677765442 24577788888888888887743
No 5
>d1u5pa2 a.7.1.1 (A:1772-1872) Spectrin alpha chain {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.25 E-value=1e+02 Score=19.22 Aligned_cols=44 Identities=14% Similarity=0.246 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHH-------HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRE-------RKYHQQNTAYELNALSTQWRELCAKN 182 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~-------RK~~Q~~~g~~L~~LE~~W~~lv~kn 182 (226)
+++++......++.|+.. .......+...+..|..+|..+....
T Consensus 43 ~~~~i~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~~~~l~~~w~~L~~~~ 93 (101)
T d1u5pa2 43 LEAELAAHEPAIQGVLDTGKKLSDDNTIGKEEIQQRLAQFVDHWKELKQLA 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555532 22345567788889999999988753
No 6
>d1zkea1 a.30.6.1 (A:1-79) Hypothetical protein HP1531 {Helicobacter pylori [TaxId: 210]}
Probab=18.77 E-value=44 Score=21.99 Aligned_cols=20 Identities=25% Similarity=0.373 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNRERK 158 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~~RK 158 (226)
+..++..+|++|+.+|+-.|
T Consensus 55 id~ev~kLK~~IdaLNKiKk 74 (79)
T d1zkea1 55 LSEEVERLKELINALNKIKK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999998755
No 7
>d1s35a2 a.7.1.1 (A:1169-1273) Spectrin beta chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.03 E-value=1.2e+02 Score=19.13 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAVNR-------ERKYHQQNTAYELNALSTQWRELCAKN 182 (226)
Q Consensus 139 lek~L~~~k~~ie~VN~-------~RK~~Q~~~g~~L~~LE~~W~~lv~kn 182 (226)
+++++...+..|+.|+. ..-.....+..++..|..+|..+....
T Consensus 45 l~~~l~~~~~~v~~l~~~a~~L~~~~~~~~~~I~~~~~~l~~rw~~l~~~~ 95 (105)
T d1s35a2 45 FLGSMENNRDKVLSPVDSGNKLVAEGNLYSDKIKEKVQLIEDRHRKNNEKA 95 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666665553 222345577788889999999888753
No 8
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=14.90 E-value=33 Score=23.60 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=15.6
Q ss_pred CCCCCCeeeecCCCCCCCC
Q 027260 5 SNNNGDILMLEAPPDAARP 23 (226)
Q Consensus 5 ~~~~~~~~~l~~~~~~~~~ 23 (226)
.|..+++++|.||||++..
T Consensus 2 ~~~~~~iivl~G~~GsGKs 20 (171)
T d1knqa_ 2 TNHDHHIYVLMGVSGSGKS 20 (171)
T ss_dssp CCTTSEEEEEECSTTSCHH
T ss_pred CCCCCeEEEEECCCCCCHH
Confidence 5678999999999997644
No 9
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=11.99 E-value=1.8e+02 Score=21.74 Aligned_cols=15 Identities=20% Similarity=0.286 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027260 139 MQRLAQEQNEKIEAV 153 (226)
Q Consensus 139 lek~L~~~k~~ie~V 153 (226)
++.|+.+++++|+.|
T Consensus 56 i~~E~~~l~~ei~~i 70 (395)
T d1io1a_ 56 IQAEITQRLNEIDRV 70 (395)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555544
No 10
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.13 E-value=75 Score=21.59 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHHH
Q 027260 151 EAVNRERKYHQ-QNTAYELNALSTQWRELCA 180 (226)
Q Consensus 151 e~VN~~RK~~Q-~~~g~~L~~LE~~W~~lv~ 180 (226)
-.||+-||..- ..+..--+.|-.+|+..|.
T Consensus 57 k~Vn~LrK~~~~~~v~~lAk~Lv~~WK~~v~ 87 (103)
T d1wjta_ 57 VAVNGVRKHCSDKEVVSLAKVLIKNWKRLLD 87 (103)
T ss_dssp HHHHHHHHHCCCSHHHHHHHHHHHHHHHHTC
T ss_pred HhHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788888643 5677777789999999874
Done!