BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027264
         (226 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           WITH BOUND NADH
 pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           WITH BOUND NADH
 pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           RE-Refined To 3.15 Angstrom Resolution
 pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 pdb|2YBB|8 Chain 8, Fitted Model For Bovine  Mitochondrial Supercomplex
           I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
 pdb|4HEA|9 Chain 9, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
 pdb|4HEA|O Chain O, Crystal Structure Of The Entire Respiratory Complex I From
           Thermus Thermophilus
          Length = 182

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/122 (46%), Positives = 73/122 (59%), Gaps = 6/122 (4%)

Query: 75  LFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCE 134
           + L  + + LG+TLKY F K VT+ YP     L PRF G H L R+P G E+CI C LC 
Sbjct: 1   MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60

Query: 135 AVCPAQAITIEAEERED------GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 188
           A CPA AI +E  E +       G R    Y+I+M +CI+CG C+EACP  AIV G +FE
Sbjct: 61  AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120

Query: 189 YS 190
            +
Sbjct: 121 MA 122


>pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
           Model At 1.8 Angstroms Resolution
          Length = 55

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 30/60 (50%), Gaps = 10/60 (16%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184
           E CI+C  CE  CP  AI          S+  +RY ID   CI CG C   CPVDA V+ 
Sbjct: 6   EACISCGACEPECPVDAI----------SQGGSRYVIDADTCIDCGACAGVCPVDAPVQA 55


>pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From
           Clostridium Acidurici At 1.84 Angstroms Resolution
 pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
          Length = 55

 Score = 48.9 bits (115), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184
           E CI+C  CE  CP  AI          S    RY ID   CI CG C   CPVDA V+ 
Sbjct: 6   EACISCGACEPECPVNAI----------SSGDDRYVIDADTCIDCGACAGVCPVDAPVQA 55


>pdb|1CLF|A Chain A, Clostridium Pasteurianum Ferredoxin
          Length = 55

 Score = 40.4 bits (93), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183
           + C++C  C + CP  AI          S+  + + ID   CI CG C   CPV A V+
Sbjct: 6   DSCVSCGACASECPVNAI----------SQGDSIFVIDADTCIDCGNCANVCPVGAPVQ 54



 Score = 30.0 bits (66), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 166 CIYCGFCQEACPVDAIVEG 184
           C+ CG C   CPV+AI +G
Sbjct: 8   CVSCGACASECPVNAISQG 26


>pdb|1DUR|A Chain A, Replacement For 1fdx 2(4fe4s) Ferredoxin From (Now)
           Peptostreptococcus Asaccharolyticus
          Length = 55

 Score = 40.0 bits (92), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180
           + CIAC  C+  CP   I       ++GS     Y ID   CI CG C   CPV A
Sbjct: 6   DSCIACGACKPECPVNCI-------QEGSI----YAIDADSCIDCGSCASVCPVGA 50



 Score = 29.6 bits (65), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 166 CIYCGFCQEACPVDAIVEG 184
           CI CG C+  CPV+ I EG
Sbjct: 8   CIACGACKPECPVNCIQEG 26


>pdb|3EUN|A Chain A, Crystal Structure Of The 2[4fe-4s] C57a Ferredoxin Variant
           From Allochromatium Vinosum
          Length = 82

 Score = 36.6 bits (83), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 32/70 (45%), Gaps = 16/70 (22%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC------GFCQEACPV 178
           + CI C +CE  CP  AI          S+    Y I+ + C  C        C E CPV
Sbjct: 6   DECINCDVCEPECPNGAI----------SQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55

Query: 179 DAIVEGPNFE 188
           DAI++ P+ E
Sbjct: 56  DAIIKDPSHE 65


>pdb|1F5C|A Chain A, Crystal Structure Of F25h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score = 36.2 bits (82), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCHYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCHYEGPNF 31


>pdb|1FD2|A Chain A, Site-Directed Mutagenesis Of Azotobacter Vinelandii
           Ferredoxin I. (Fe-S) Cluster-Driven Protein
           Rearrangement
          Length = 106

 Score = 36.2 bits (82), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVAPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 27.3 bits (59), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E  PVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVAPVDCFYEGPNF 31


>pdb|1G3O|A Chain A, Crystal Structure Of V19e Mutant Of Ferredoxin I
          Length = 106

 Score = 36.2 bits (82), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E+ P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EECPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 30.8 bits (68), Expect = 0.72,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEECPVDCFYEGPNF 31


>pdb|1FRX|A Chain A, Structure And Properties Of C20s Fdi Mutant
          Length = 106

 Score = 35.8 bits (81), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVSPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 27.3 bits (59), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E  PVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVSPVDCFYEGPNF 31


>pdb|1G6B|A Chain A, Crystal Structure Of P47s Mutant Of Ferredoxin I
          Length = 106

 Score = 35.8 bits (81), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE+ CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCESECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|2FD2|A Chain A, Crystallographic Analysis Of Two Site-Directed Mutants Of
           Azotobacter Vinelandii Ferredoxin
          Length = 106

 Score = 35.8 bits (81), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDAFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVDA  EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDAFYEGPNF 31


>pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
           Desulfovibrio Desulfuricans
 pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
           Desulfovibrio Desulfuricans
          Length = 421

 Score = 35.4 bits (80), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183
           E +CI C  C   CP  AI  E  E              +  CI CG C   CP +AI E
Sbjct: 32  EAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH--------IEACINCGQCLTHCPENAIYE 83

Query: 184 GPNF 187
             ++
Sbjct: 84  AQSW 87



 Score = 26.9 bits (58), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 161 IDMTKCIYCGFCQEACPVDAI 181
           ID  KCI C  C + CP  AI
Sbjct: 30  IDEAKCIGCDTCSQYCPTAAI 50


>pdb|1FRI|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score = 35.4 bits (80), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P++  + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVNCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPV+   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVNCFYEGPNF 31


>pdb|1D3W|A Chain A, Crystal Structure Of Ferredoxin 1 D15e Mutant From
           Azotobacter Vinelandii At 1.7 Angstrom Resolution
          Length = 106

 Score = 35.0 bits (79), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 30.8 bits (68), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTECVEVCPVDCFYEGPNF 31


>pdb|1FDD|A Chain A, Azotobacter Vinelandii Ferredoxin I: Aspartate 15
           Facilitates Proton Transfer To The Reduced [3fe-4s]
           Cluster
          Length = 106

 Score = 35.0 bits (79), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTNCVEVCPVDCFYEGPNF 31


>pdb|1FRJ|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score = 35.0 bits (79), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 102 FEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
            E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 17  VEVCPVDCIYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 33.1 bits (74), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 15/25 (60%), Positives = 16/25 (64%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD I EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCIYEGPNF 31


>pdb|1FRH|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score = 35.0 bits (79), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|1B0T|A Chain A, D15kK84D MUTANT OF AZOTOBACTER VINELANDII FDI
          Length = 106

 Score = 35.0 bits (79), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTKCVEVCPVDCFYEGPNF 31


>pdb|1AXQ|A Chain A, Ferricyanide Oxidized Fdi
 pdb|1FDA|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 pdb|1FDB|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 pdb|1FER|A Chain A, Structure At Ph 6.5 Of Ferredoxin I From Azotobacter
           Vinelandii At 2.3 Angstroms Resolution
 pdb|5FD1|A Chain A, Crystal Structures Of Oxidized And Reduced Azotobacter
           Vinelandii Ferredoxin At Ph 8 And Ph 6
 pdb|6FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii Low
           Temperature, 1.35 A
 pdb|7FD1|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At Ph 8.5, 100
           K, 1.35 A
 pdb|7FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii, Na Dithionite
           Reduced, Ph 8.5, 1.4a Resolution, 100 K
 pdb|6FDR|A Chain A, 7-Fe Ferredoxin From Azotobacter Vinelandii At 100k, Na
           Dithionite Reduced At Ph 8.5, Resolution 1.4 A
          Length = 106

 Score = 35.0 bits (79), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|1F5B|A Chain A, Crystal Structure Of F2h Ferredoxin 1 Mutant From
           Azotobacter Vinelandii At 1.75 Angstrom Resolution
          Length = 106

 Score = 35.0 bits (79), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|1FRL|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score = 35.0 bits (79), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DSCIDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|1FTC|A Chain A, Y13c Mutant Of Azotobacter Vinelandii Fdi
 pdb|1FTC|B Chain B, Y13c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score = 35.0 bits (79), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C    C E CPVD   EGPNF
Sbjct: 7   NCIKCKXTDCVEVCPVDCFYEGPNF 31


>pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
           Complex Combining Nmr And Soft-Docking
 pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
           Cytochrome C3 And [fe]-Hydrogenase
          Length = 371

 Score = 35.0 bits (79), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183
           E +CI C  C   CP  AI  E  E              +  CI CG C   CP +AI E
Sbjct: 6   EAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH--------IEACINCGQCLTHCPENAIYE 57

Query: 184 GPNF 187
             ++
Sbjct: 58  AQSW 61


>pdb|1A6L|A Chain A, T14c Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score = 35.0 bits (79), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 32.7 bits (73), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 15/23 (65%), Positives = 15/23 (65%), Gaps = 1/23 (4%)

Query: 165 KCIYCGFCQEACPVDAIVEGPNF 187
           KC YC  C E CPVD   EGPNF
Sbjct: 10  KCKYCD-CVEVCPVDCFYEGPNF 31


>pdb|1BLU|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Chromatium
           Vinosum
          Length = 82

 Score = 34.3 bits (77), Expect = 0.052,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 16/70 (22%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC------GFCQEACPV 178
           + CI C +CE  CP  AI          S+    Y I+ + C  C        C E CPV
Sbjct: 6   DECINCDVCEPECPNGAI----------SQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55

Query: 179 DAIVEGPNFE 188
           D I++ P+ E
Sbjct: 56  DCIIKDPSHE 65


>pdb|2V4J|B Chain B, The Crystal Structure Of Desulfovibrio Vulgaris
           Dissimilatory Sulfite Reductase Bound To Dsrc Provides
           Novel Insights Into The Mechanism Of Sulfate Respiration
 pdb|2V4J|E Chain E, The Crystal Structure Of Desulfovibrio Vulgaris
           Dissimilatory Sulfite Reductase Bound To Dsrc Provides
           Novel Insights Into The Mechanism Of Sulfate Respiration
          Length = 381

 Score = 34.3 bits (77), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 7/77 (9%)

Query: 113 GEHALRRYPTGEERCIACKLCE-----AVCPAQAITIEAEEREDGSRRTTRYDIDMTKCI 167
           G   + R P   +     +LCE     A CP  A+     + E G ++     I   +C+
Sbjct: 202 GVVGIHRKPPMIDHEWTDQLCEIPLAVASCPTAAV--RPTKLEIGDKKVNTIAIKNERCM 259

Query: 168 YCGFCQEACPVDAIVEG 184
           YCG C   CP   I +G
Sbjct: 260 YCGNCYTMCPALPISDG 276


>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between
           Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
           Africanus And Pyruvate.
 pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between
           Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio
           Africanus And Pyruvate.
 pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase
 pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase
 pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus, Oxygen Inhibited Form
 pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus, Oxygen Inhibited Form
 pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
          Length = 1231

 Score = 34.3 bits (77), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 19/71 (26%)

Query: 125 ERCIACKLCEAVCPAQAI------------------TIEAEEREDGSRRTTRYDIDMTKC 166
           E CI C  C  VCP  AI                   +EA+ +E    +  R  I+   C
Sbjct: 686 ENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYK-FRIQINTLDC 744

Query: 167 IYCGFCQEACP 177
           + CG C + CP
Sbjct: 745 MGCGNCADICP 755


>pdb|1FRK|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score = 33.5 bits (75), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L   P   + CI C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIDP---DECIDCALCEPECPAQAIFSEDEVPED 63



 Score = 30.8 bits (68), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31



 Score = 26.9 bits (58), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 125 ERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181
           + CI CK   C  VCP            +G        ID  +CI C  C+  CP  AI
Sbjct: 6   DNCIKCKYTDCVEVCPVDCFY-------EGPNFLV---IDPDECIDCALCEPECPAQAI 54


>pdb|2ZVS|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
           Escherichia Coli
 pdb|2ZVS|B Chain B, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
           Escherichia Coli
 pdb|2ZVS|C Chain C, Crystal Structure Of The 2[4fe-4s] Ferredoxin From
           Escherichia Coli
          Length = 85

 Score = 33.1 bits (74), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 17/68 (25%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC------GFCQEACPV 178
           ++CI C +CE  CP +AI          S     Y+I+  KC  C        CQ+ CP+
Sbjct: 6   KKCINCDMCEPECPNEAI----------SMGDHIYEINSDKCTECVGHYETPTCQKVCPI 55

Query: 179 -DAIVEGP 185
            + IV+ P
Sbjct: 56  PNTIVKDP 63


>pdb|1FRM|A Chain A, Azotobacter Vinelandii Ferredoxin I: Alteration Of
           Individual Surface Charges And The [4fe-4s] Cluster
           Reduction Potential
          Length = 106

 Score = 32.7 bits (73), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LC   CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCALCAPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.54,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|1BQX|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
           Schlegelii Fe7s8 Ferredoxin
 pdb|1BWE|A Chain A, Artificial Fe8s8 Ferredoxin: The D13c Variant Of Bacillus
           Schlegelii Fe7s8 Ferredoxin
          Length = 77

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 125 ERCIA--CKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181
           E CI   C  C  VCP   I     E ED      +Y ID   CI CG C+  CPV AI
Sbjct: 6   EPCIGTKCASCVEVCPVDCI----HEGED------QYYIDPDVCIDCGACEAVCPVSAI 54



 Score = 27.7 bits (60), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAI 142
           E  P+     GE    +Y    + CI C  CEAVCP  AI
Sbjct: 18  EVCPVDCIHEGE---DQYYIDPDVCIDCGACEAVCPVSAI 54


>pdb|3EXY|A Chain A, Crystal Structure Of The 2[4fe-4s] Ferredoxin V13g Variant
           From Allochromatium Vinosum
          Length = 82

 Score = 32.7 bits (73), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 16/70 (22%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC------GFCQEACPV 178
           + CI C  CE  CP  AI          S+    Y I+ + C  C        C E CPV
Sbjct: 6   DECINCDGCEPECPNGAI----------SQGDETYVIEPSLCTECVGHYETSQCVEVCPV 55

Query: 179 DAIVEGPNFE 188
           D I++ P+ E
Sbjct: 56  DCIIKDPSHE 65


>pdb|1GAO|A Chain A, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 pdb|1GAO|B Chain B, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 pdb|1GAO|C Chain C, Crystal Structure Of The L44s Mutant Of Ferredoxin I
 pdb|1GAO|D Chain D, Crystal Structure Of The L44s Mutant Of Ferredoxin I
          Length = 106

 Score = 32.3 bits (72), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C  CE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDCASCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|1B0V|A Chain A, I40n Mutant Of Azotobacter Vinelandii Fdi
 pdb|1B0V|B Chain B, I40n Mutant Of Azotobacter Vinelandii Fdi
 pdb|1B0V|C Chain C, I40n Mutant Of Azotobacter Vinelandii Fdi
 pdb|1B0V|D Chain D, I40n Mutant Of Azotobacter Vinelandii Fdi
          Length = 106

 Score = 32.0 bits (71), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + C  C LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECNDCALCEPECPAQAIFSEDEVPED 63



 Score = 31.2 bits (69), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31


>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
           From Pyrococcus Abysii
          Length = 607

 Score = 32.0 bits (71), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 11/81 (13%)

Query: 109 PRF-RGEHALRRYPTGE---ERCIACK----LCEAVCPAQAITIEAEEREDGSRRTTRYD 160
           P+F +G H +R+        ++C   K    LCE VCP   +  EA   ++ + +     
Sbjct: 7   PQFEKGAHMVRKMRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPI--- 63

Query: 161 IDMTKCIYCGFCQEACPVDAI 181
           I    C  CG C   CP +AI
Sbjct: 64  IQEASCTGCGICVHKCPFNAI 84


>pdb|3MMC|B Chain B, Structure Of The Dissimilatory Sulfite Reductase From
           Archaeoglobus Fulgidus
 pdb|3MMC|E Chain E, Structure Of The Dissimilatory Sulfite Reductase From
           Archaeoglobus Fulgidus
 pdb|3MM5|B Chain B, Dissimilatory Sulfite Reductase In Complex With The
           Substrate Sulfite
 pdb|3MM5|E Chain E, Dissimilatory Sulfite Reductase In Complex With The
           Substrate Sulfite
 pdb|3MM6|B Chain B, Dissimilatory Sulfite Reductase Cyanide Complex
 pdb|3MM6|E Chain E, Dissimilatory Sulfite Reductase Cyanide Complex
 pdb|3MM7|B Chain B, Dissimilatory Sulfite Reductase Carbon Monoxide Complex
 pdb|3MM7|E Chain E, Dissimilatory Sulfite Reductase Carbon Monoxide Complex
 pdb|3MM8|B Chain B, Dissimilatory Sulfite Reductase Nitrate Complex
 pdb|3MM8|E Chain E, Dissimilatory Sulfite Reductase Nitrate Complex
 pdb|3MM9|B Chain B, Dissimilatory Sulfite Reductase Nitrite Complex
 pdb|3MM9|E Chain E, Dissimilatory Sulfite Reductase Nitrite Complex
 pdb|3MMA|B Chain B, Dissimilatory Sulfite Reductase Phosphate Complex
 pdb|3MMA|E Chain E, Dissimilatory Sulfite Reductase Phosphate Complex
 pdb|3MMB|B Chain B, Dissimilatory Sulfite Reductase In Complex With The
           Endproduct Sulfide
 pdb|3MMB|E Chain E, Dissimilatory Sulfite Reductase In Complex With The
           Endproduct Sulfide
          Length = 366

 Score = 32.0 bits (71), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 13/52 (25%)

Query: 131 KLCE-----AVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 177
           K CE     A CP  A+      + D   +T + D++  KC+YCG C   CP
Sbjct: 209 KTCEIPSTVAACPTGAL------KPDMKNKTIKVDVE--KCMYCGNCYTMCP 252


>pdb|1PC4|A Chain A, Crystal Structure Of The P50a Mutant Of Ferredoxin I At
           1.65 A Resolution
          Length = 107

 Score = 31.6 bits (70), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  C AQAI  E E  ED
Sbjct: 19  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECAAQAIFSEDEVPED 64



 Score = 31.2 bits (69), Expect = 0.49,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 8   NCIKCKYTDCVEVCPVDCFYEGPNF 32


>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
          Length = 593

 Score = 31.6 bits (70), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)

Query: 132 LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181
           LCE VCP   +  EA   ++ + +     I    C  CG C   CP +AI
Sbjct: 24  LCERVCPVNRMGGEAIIIDEENYKPI---IQEASCTGCGICVHKCPFNAI 70


>pdb|1FF2|A Chain A, Crystal Structure Of The C42d Mutant Of Azotobacter
           Vinelandii 7fe Ferredoxin (Fdi)
          Length = 106

 Score = 31.2 bits (69), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 7   NCIKCKYTDCVEVCPVDCFYEGPNF 31



 Score = 30.4 bits (67), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI   LCE  CPAQAI  E E  ED
Sbjct: 18  EVCPVDCFYEGPNFLVIHP---DECIDDALCEPECPAQAIFSEDEVPED 63


>pdb|1PC5|A Chain A, Crystal Structure Of The P50g Mutant Of Ferredoxin I At
           1.8 A Resolution
          Length = 107

 Score = 31.2 bits (69), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERED 151
           E  P+   + G + L  +P   + CI C LCE  C AQAI  E E  ED
Sbjct: 19  EVCPVDCFYEGPNFLVIHP---DECIDCALCEPECGAQAIFSEDEVPED 64



 Score = 31.2 bits (69), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 2/25 (8%)

Query: 165 KCIYCGF--CQEACPVDAIVEGPNF 187
            CI C +  C E CPVD   EGPNF
Sbjct: 8   NCIKCKYTDCVEVCPVDCFYEGPNF 32


>pdb|1BC6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, 20
           Structures
          Length = 77

 Score = 31.2 bits (69), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 125 ERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181
           E CI  K   C  VCP   I     E ED      +Y ID   CI CG C+  CPV AI
Sbjct: 6   EPCIGTKDASCVEVCPVDCI----HEGED------QYYIDPDVCIDCGACEAVCPVSAI 54



 Score = 28.1 bits (61), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAI 142
           E  P+     GE    +Y    + CI C  CEAVCP  AI
Sbjct: 18  EVCPVDCIHEGE---DQYYIDPDVCIDCGACEAVCPVSAI 54


>pdb|1BD6|A Chain A, 7-Fe Ferredoxin From Bacillus Schlegelii, Nmr, Minimized
           Average Structure
          Length = 77

 Score = 31.2 bits (69), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 125 ERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181
           E CI  K   C  VCP   I     E ED      +Y ID   CI CG C+  CPV AI
Sbjct: 6   EPCIGTKDASCVEVCPVDCI----HEGED------QYYIDPDVCIDCGACEAVCPVSAI 54



 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 103 EKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAI 142
           E  P+     GE    +Y    + CI C  CEAVCP  AI
Sbjct: 18  EVCPVDCIHEGE---DQYYIDPDVCIDCGACEAVCPVSAI 54


>pdb|2VPW|B Chain B, Polysulfide Reductase With Bound Menaquinone
 pdb|2VPW|F Chain F, Polysulfide Reductase With Bound Menaquinone
 pdb|2VPX|B Chain B, Polysulfide Reductase With Bound Quinone (uq1)
 pdb|2VPX|F Chain F, Polysulfide Reductase With Bound Quinone (uq1)
 pdb|2VPY|B Chain B, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 pdb|2VPY|F Chain F, Polysulfide Reductase With Bound Quinone Inhibitor,
           Pentachlorophenol (Pcp)
 pdb|2VPZ|B Chain B, Polysulfide Reductase Native Structure
 pdb|2VPZ|F Chain F, Polysulfide Reductase Native Structure
          Length = 195

 Score = 31.2 bits (69), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 125 ERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180
           E+C+ C+   C  VCP  A    + + +DG        +D  KCI CG C  ACP DA
Sbjct: 56  EQCLHCENPPCVPVCPTGA----SYQTKDG-----LVLVDPKKCIACGACIAACPYDA 104


>pdb|3OR2|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
           (Dsrii)
 pdb|3OR2|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase Ii
           (Dsrii)
          Length = 385

 Score = 31.2 bits (69), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 118 RRYPTGEERCIACKLCE-----AVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 172
           R+ P  +   +A +LCE     A CP  A+  +    E   ++     I+  +C+YCG C
Sbjct: 207 RKPPMIDHENLA-ELCEIPLAVAACPTAAV--KPITAEVNGQKVKSVAINNDRCMYCGNC 263

Query: 173 QEACPVDAIVEG 184
              CP   + +G
Sbjct: 264 YTMCPALPLSDG 275


>pdb|3OR1|B Chain B, Crystal Structure Of Dissimilatory Sulfite Reductase I
           (Dsri)
 pdb|3OR1|E Chain E, Crystal Structure Of Dissimilatory Sulfite Reductase I
           (Dsri)
          Length = 386

 Score = 30.8 bits (68), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 118 RRYPTGEERCIACKLCE-----AVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 172
           R+ P  +   +A +LCE     A CP  A+  +    E   ++     I+  +C+YCG C
Sbjct: 208 RKPPMIDHENLA-ELCEIPLAVAACPTAAV--KPITAEVNGQKVKSVAINNDRCMYCGNC 264

Query: 173 QEACPVDAIVEG 184
              CP   + +G
Sbjct: 265 YTMCPALPLSDG 276


>pdb|2FGO|A Chain A, Structure Of The 2[4fe-4s] Ferredoxin From Pseudomonas
           Aeruginosa
          Length = 82

 Score = 30.4 bits (67), Expect = 0.75,   Method: Compositional matrix adjust.
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 16/63 (25%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC------GFCQEACPV 178
           + CI C +CE  CP  AI          S+    Y ID   C  C        CQ+ CPV
Sbjct: 6   DDCINCDVCEPECPNGAI----------SQGEEIYVIDPNLCTECVGHYDEPQCQQVCPV 55

Query: 179 DAI 181
           D I
Sbjct: 56  DCI 58


>pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum
 pdb|1C4A|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
           Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
           Pasteurianum
 pdb|1C4C|A Chain A, Binding Of Exogenously Added Carbon Monoxide At The Active
           Site Of The Fe-Only Hydrogenase (Cpi) From Clostridium
           Pasteurianum
 pdb|3C8Y|A Chain A, 1.39 Angstrom Crystal Structure Of Fe-Only Hydrogenase
          Length = 574

 Score = 30.0 bits (66), Expect = 1.00,   Method: Compositional matrix adjust.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 106 PLSPRFRGEHALRR---YPTGEERCIACKLCEAVCPAQAITIEAE-EREDGSRRTTRYD- 160
           P  P+ + E+   R         +C+ C  C   C     T   +   ++G       D 
Sbjct: 123 PFLPKDKTEYVDERSKSLTVDRTKCLLCGRCVNACGKNTETYAMKFLNKNGKTIIGAEDE 182

Query: 161 --IDMTKCIYCGFCQEACPVDAIVE 183
              D T C+ CG C  ACPV A+ E
Sbjct: 183 KCFDDTNCLLCGQCIIACPVAALSE 207


>pdb|1RGV|A Chain A, Crystal Structure Of The Ferredoxin From Thauera Aromatica
          Length = 80

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC--GF----CQEACPV 178
           + C AC  C   CP +AIT               Y ID TKC  C   F    C+  CP 
Sbjct: 6   DDCTACDACVEECPNEAIT----------PGDPIYVIDPTKCSECVGAFDEPQCRLVCPA 55

Query: 179 DAIVEGPNFEYSTE 192
           D I + P++  + E
Sbjct: 56  DCIPDNPDYRETRE 69


>pdb|1KF6|B Chain B, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
           Hqno
 pdb|1KF6|N Chain N, E. Coli Quinol-Fumarate Reductase With Bound Inhibitor
           Hqno
 pdb|1KFY|B Chain B, Quinol-fumarate Reductase With Quinol Inhibitor
           2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
 pdb|1KFY|N Chain N, Quinol-fumarate Reductase With Quinol Inhibitor
           2-[1-(4-chloro- Phenyl)-ethyl]-4,6-dinitro-phenol
 pdb|1L0V|B Chain B, Quinol-Fumarate Reductase With Menaquinol Molecules
 pdb|1L0V|N Chain N, Quinol-Fumarate Reductase With Menaquinol Molecules
 pdb|2B76|B Chain B, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
 pdb|2B76|N Chain N, E. Coli Quinol Fumarate Reductase Frda E49q Mutation
 pdb|3CIR|B Chain B, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
 pdb|3CIR|N Chain N, E. Coli Quinol Fumarate Reductase Frda T234a Mutation
 pdb|3P4R|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
           Complex With Glutarate
 pdb|3P4R|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
           Complex With Glutarate
 pdb|3P4P|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
           Complex With Fumarate
 pdb|3P4P|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
           Complex With Fumarate
 pdb|3P4Q|B Chain B, Crystal Structure Of Menaquinol:oxidoreductase In Complex
           With Oxaloacetate
 pdb|3P4Q|N Chain N, Crystal Structure Of Menaquinol:oxidoreductase In Complex
           With Oxaloacetate
 pdb|3P4S|B Chain B, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
           Complex With A 3-Nitropropionate Adduct
 pdb|3P4S|N Chain N, Crystal Structure Of Menaquinol:fumarate Oxidoreductase In
           Complex With A 3-Nitropropionate Adduct
          Length = 243

 Score = 29.6 bits (65), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 17/68 (25%)

Query: 127 CIACKLCEAVCP----------AQAITIE---AEEREDGSRRTTRYDID----MTKCIYC 169
           CI C LC A CP            AIT+     E+  D  ++     ++    +  C + 
Sbjct: 148 CINCGLCYAACPQFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSQNGVWSCTFV 207

Query: 170 GFCQEACP 177
           G+C E CP
Sbjct: 208 GYCSEVCP 215


>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
           Ribosomal Binding Partners
          Length = 608

 Score = 29.6 bits (65), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 17/64 (26%)

Query: 131 KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYS 190
           KLC  V P   I   +E                  CI CG C + CP DAI +  N   +
Sbjct: 36  KLCIEVTPTSKIAFISE----------------ILCIGCGICVKKCPFDAI-QIINLPTN 78

Query: 191 TETH 194
            E H
Sbjct: 79  LEAH 82


>pdb|1DWL|A Chain A, The Ferredoxin-Cytochrome Complex Using Heteronuclear Nmr
           And Docking Simulation
          Length = 59

 Score = 28.9 bits (63), Expect = 2.6,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 17/62 (27%)

Query: 125 ERCIACKLCEAVCPAQAITIEAEERE-----DGSRRTTRYDIDMTKCIYCGFCQEACPVD 179
           E CI C+ C  +CP     I+ EE+      D +    +  ID            ACPV+
Sbjct: 7   EECIGCESCVELCPEVFAMIDGEEKAMVTAPDSTAECAQDAID------------ACPVE 54

Query: 180 AI 181
           AI
Sbjct: 55  AI 56


>pdb|1H98|A Chain A, New Insights Into Thermostability Of Bacterial
           Ferredoxins: High Resolution Crystal Structure Of The
           Seven-Iron Ferredoxin From Thermus Thermophilus
          Length = 78

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 12/59 (20%)

Query: 125 ERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181
           E CI  K   C  VCP + I        DG     ++ I   +CI CG C  ACPV+AI
Sbjct: 6   EPCIGVKDQSCVEVCPVECIY-------DGG---DQFYIHPEECIDCGACVPACPVNAI 54


>pdb|1JNR|B Chain B, Structure Of Adenylylsulfate Reductase From The
           Hyperthermophilic Archaeoglobus Fulgidus At 1.6
           Resolution
 pdb|1JNR|D Chain D, Structure Of Adenylylsulfate Reductase From The
           Hyperthermophilic Archaeoglobus Fulgidus At 1.6
           Resolution
 pdb|1JNZ|B Chain B, Structure Of Adenylylsulfate Reductase From The
           Hyperthermophilic Archaeoglobus Fulgidus At 1.6
           Resolution
 pdb|1JNZ|D Chain D, Structure Of Adenylylsulfate Reductase From The
           Hyperthermophilic Archaeoglobus Fulgidus At 1.6
           Resolution
 pdb|2FJA|B Chain B, Adenosine 5'-Phosphosulfate Reductase In Complex With
           Substrate
 pdb|2FJA|D Chain D, Adenosine 5'-Phosphosulfate Reductase In Complex With
           Substrate
 pdb|2FJB|B Chain B, Adenosine-5'-Phosphosulfate Reductase Im Complex With
           Products
 pdb|2FJB|D Chain D, Adenosine-5'-Phosphosulfate Reductase Im Complex With
           Products
 pdb|2FJD|B Chain B, Adenosine-5-Phosphosulfate Reductase In Complex With
           Sulfite (Covalent Adduct)
 pdb|2FJD|D Chain D, Adenosine-5-Phosphosulfate Reductase In Complex With
           Sulfite (Covalent Adduct)
 pdb|2FJE|B Chain B, Adenosine-5-Phosphosulfate Reductase Oxidized State
 pdb|2FJE|D Chain D, Adenosine-5-Phosphosulfate Reductase Oxidized State
          Length = 150

 Score = 28.5 bits (62), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 12/62 (19%)

Query: 125 ERCIACKL-----CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD 179
           E+C  CK      CE +CP   +T++ E       +   Y+ +   C  C  C + CP  
Sbjct: 8   EKCDGCKALERTACEYICPNDLMTLDKE-------KMKAYNREPDMCWECYSCVKMCPQG 60

Query: 180 AI 181
           AI
Sbjct: 61  AI 62


>pdb|2XSJ|B Chain B, Structure Of Desulforubidin From Desulfomicrobium
           Norvegicum
 pdb|2XSJ|E Chain E, Structure Of Desulforubidin From Desulfomicrobium
           Norvegicum
          Length = 386

 Score = 28.5 bits (62), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 132 LCEAVCPAQAITIEAEE--REDGSRRTTR-YDIDMTKCIYCGFCQEACP 177
           L  A CP  AI    +E   E G  +T     I   +C++CG C   CP
Sbjct: 226 LAVAACPVGAIRPTKKEIVTEKGETKTVNTVAIKNERCMFCGNCYTMCP 274


>pdb|2Z8Q|A Chain A, Ferredoxin From Pyrococcus Furiosus, D14c Variant
 pdb|2Z8Q|B Chain B, Ferredoxin From Pyrococcus Furiosus, D14c Variant
 pdb|3PNI|A Chain A, Crystal Structure Of D14c [3fe-4s] Pyrococcus Furiosus
           Ferredoxin
 pdb|3PNI|B Chain B, Crystal Structure Of D14c [3fe-4s] Pyrococcus Furiosus
           Ferredoxin
 pdb|4DHV|B Chain B, Crystal Structure Of The Pyrococcus Furiosus Ferredoxin
           D14c Variant Containing The Heterometallic [agfe3s4]
           Cluster
 pdb|4DHV|A Chain A, Crystal Structure Of The Pyrococcus Furiosus Ferredoxin
           D14c Variant Containing The Heterometallic [agfe3s4]
           Cluster
          Length = 66

 Score = 28.1 bits (61), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIY-CGF-CQEACPVDAI 181
           ++ CI C +C ++CP      +  E  D  +   + ++   + +Y C     EACPV AI
Sbjct: 8   QDTCIGCAICASLCP------DVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSAI 61


>pdb|1XER|A Chain A, Structure Of Ferredoxin
          Length = 103

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 121 PTGEERCIACKLCEAVCPAQAITIE 145
           P  E+ CI C  C  VCP  AI ++
Sbjct: 77  PVNEQACIFCMACVNVCPVAAIDVK 101


>pdb|3ZEY|M Chain M, High-resolution Cryo-electron Microscopy Structure Of The
           Trypanosoma Brucei Ribosome
          Length = 153

 Score = 27.7 bits (60), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 76  FLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSP 109
           F   MV+G+G+   Y   KK  ++     G LSP
Sbjct: 29  FALRMVKGIGIRFAYMVCKKAGVDVERRAGTLSP 62


>pdb|2VKR|A Chain A, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 pdb|2VKR|B Chain B, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 pdb|2VKR|C Chain C, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 pdb|2VKR|D Chain D, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 pdb|2VKR|E Chain E, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 pdb|2VKR|F Chain F, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 pdb|2VKR|G Chain G, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
          Length = 103

 Score = 27.7 bits (60), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 121 PTGEERCIACKLCEAVCPAQAITIE 145
           P  E+ CI C  C  VCP  AI ++
Sbjct: 77  PINEQACIFCMACVNVCPVAAIDVK 101


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,899,866
Number of Sequences: 62578
Number of extensions: 213838
Number of successful extensions: 463
Number of sequences better than 100.0: 66
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 285
Number of HSP's gapped (non-prelim): 164
length of query: 226
length of database: 14,973,337
effective HSP length: 95
effective length of query: 131
effective length of database: 9,028,427
effective search space: 1182723937
effective search space used: 1182723937
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)