Query 027264
Match_columns 226
No_of_seqs 235 out of 2779
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 07:21:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027264.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027264hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3256 NADH:ubiquinone oxidor 100.0 5.5E-38 1.2E-42 239.5 9.3 205 15-226 8-212 (212)
2 COG1143 NuoI Formate hydrogenl 99.9 1.6E-26 3.4E-31 182.4 8.1 130 79-213 14-144 (172)
3 PRK05888 NADH dehydrogenase su 99.8 6.6E-19 1.4E-23 139.4 9.9 140 76-215 9-148 (164)
4 TIGR00403 ndhI NADH-plastoquin 99.8 9.2E-19 2E-23 140.6 9.9 124 78-206 20-144 (183)
5 TIGR01971 NuoI NADH-quinone ox 99.7 6.3E-18 1.4E-22 127.4 3.2 119 84-202 2-120 (122)
6 CHL00014 ndhI NADH dehydrogena 99.7 3.5E-16 7.5E-21 124.1 9.2 134 79-217 18-156 (167)
7 PRK08348 NADH-plastoquinone ox 99.5 5.1E-15 1.1E-19 111.2 4.7 100 84-196 5-105 (120)
8 PRK08222 hydrogenase 4 subunit 99.5 3.2E-14 7E-19 114.2 4.5 96 93-197 11-106 (181)
9 PRK12387 formate hydrogenlyase 99.4 9.3E-14 2E-18 111.5 4.8 96 93-197 11-106 (180)
10 PF14697 Fer4_21: 4Fe-4S diclu 99.4 9.4E-14 2E-18 91.2 0.6 56 122-183 3-59 (59)
11 COG1148 HdrA Heterodisulfide r 99.3 5.1E-13 1.1E-17 119.0 1.6 101 122-225 222-339 (622)
12 PF13187 Fer4_9: 4Fe-4S diclus 99.3 3.9E-13 8.4E-18 86.9 0.6 55 126-181 1-55 (55)
13 PF12838 Fer4_7: 4Fe-4S diclus 99.3 5.9E-13 1.3E-17 85.2 0.1 52 126-180 1-52 (52)
14 COG4231 Indolepyruvate ferredo 99.3 8.2E-13 1.8E-17 120.8 -0.1 151 9-185 476-629 (640)
15 PRK13984 putative oxidoreducta 99.2 1.7E-11 3.6E-16 115.4 5.2 112 84-200 9-122 (604)
16 COG1144 Pyruvate:ferredoxin ox 99.2 5.3E-12 1.1E-16 87.9 1.0 67 110-185 20-87 (91)
17 PRK09624 porD pyuvate ferredox 99.2 1.3E-11 2.8E-16 90.5 2.0 56 121-185 47-102 (105)
18 PRK06273 ferredoxin; Provision 99.1 2E-11 4.4E-16 96.3 3.1 83 122-205 46-132 (165)
19 TIGR02936 fdxN_nitrog ferredox 99.1 1.1E-11 2.3E-16 88.5 1.2 64 121-184 17-90 (91)
20 TIGR02179 PorD_KorD 2-oxoacid: 99.1 1.6E-11 3.5E-16 85.1 2.0 57 120-185 20-76 (78)
21 PRK06991 ferredoxin; Provision 99.1 3E-11 6.6E-16 102.3 1.9 57 122-187 82-138 (270)
22 PF13237 Fer4_10: 4Fe-4S diclu 99.1 4.2E-11 9E-16 76.5 1.2 49 121-177 3-52 (52)
23 CHL00065 psaC photosystem I su 99.1 7.7E-11 1.7E-15 82.3 2.3 62 122-185 6-67 (81)
24 PLN00071 photosystem I subunit 99.0 8.2E-11 1.8E-15 82.1 2.1 62 122-185 6-67 (81)
25 PRK09623 vorD 2-ketoisovalerat 99.0 7.5E-11 1.6E-15 86.5 1.9 58 120-186 46-103 (105)
26 PRK09626 oorD 2-oxoglutarate-a 99.0 1E-10 2.3E-15 85.4 2.4 64 121-186 12-75 (103)
27 PRK09625 porD pyruvate flavodo 99.0 1.3E-10 2.9E-15 88.7 2.0 54 120-182 54-107 (133)
28 COG1146 Ferredoxin [Energy pro 99.0 1E-10 2.3E-15 78.9 1.2 58 122-185 5-62 (68)
29 TIGR03048 PS_I_psaC photosyste 99.0 1.7E-10 3.7E-15 80.4 2.3 60 122-183 5-64 (80)
30 TIGR02060 aprB adenosine phosp 99.0 1.3E-10 2.9E-15 88.3 1.6 62 122-190 5-71 (132)
31 TIGR02163 napH_ ferredoxin-typ 99.0 3E-10 6.4E-15 96.0 3.2 89 88-184 164-254 (255)
32 COG1145 NapF Ferredoxin [Energ 99.0 1.8E-10 3.9E-15 82.8 1.3 59 122-185 26-84 (99)
33 PRK02651 photosystem I subunit 99.0 2.9E-10 6.3E-15 79.3 2.3 63 124-188 8-70 (81)
34 PRK05113 electron transport co 99.0 1.7E-10 3.7E-15 93.4 1.2 56 121-185 110-165 (191)
35 PRK09477 napH quinol dehydroge 99.0 4E-10 8.6E-15 96.1 3.4 94 89-188 172-266 (271)
36 TIGR01944 rnfB electron transp 98.9 2.5E-10 5.3E-15 90.4 1.4 56 121-185 109-164 (165)
37 TIGR02494 PFLE_PFLC glycyl-rad 98.9 4.1E-10 8.9E-15 97.0 1.9 62 120-186 43-104 (295)
38 COG1149 MinD superfamily P-loo 98.9 4.3E-10 9.3E-15 94.1 1.4 57 120-185 64-120 (284)
39 PRK05035 electron transport co 98.9 5E-11 1.1E-15 112.8 -5.2 98 123-221 368-465 (695)
40 TIGR02700 flavo_MJ0208 archaeo 98.9 5.4E-10 1.2E-14 93.3 1.2 63 121-193 144-206 (234)
41 PRK14028 pyruvate ferredoxin o 98.8 1.1E-09 2.4E-14 95.2 2.4 67 120-186 242-311 (312)
42 TIGR00402 napF ferredoxin-type 98.8 1.2E-09 2.7E-14 79.5 2.2 57 122-185 31-87 (101)
43 COG3383 Uncharacterized anaero 98.8 1.4E-09 3E-14 101.3 2.7 66 118-185 142-213 (978)
44 PRK08764 ferredoxin; Provision 98.8 1.2E-09 2.6E-14 83.7 1.4 52 123-183 83-134 (135)
45 PRK07569 bidirectional hydroge 98.8 1.7E-09 3.8E-14 90.3 1.8 79 120-204 141-224 (234)
46 COG2768 Uncharacterized Fe-S c 98.8 1.2E-09 2.6E-14 92.2 0.1 58 121-189 189-246 (354)
47 PF13247 Fer4_11: 4Fe-4S diclu 98.7 2.1E-09 4.5E-14 77.6 0.4 55 124-186 6-62 (98)
48 TIGR03149 cyt_nit_nrfC cytochr 98.7 2.4E-09 5.2E-14 88.9 0.4 55 122-188 122-186 (225)
49 TIGR02512 Fe_only_hydrog hydro 98.7 3.4E-09 7.5E-14 94.3 1.4 64 122-185 4-71 (374)
50 TIGR02912 sulfite_red_C sulfit 98.7 4.8E-09 1E-13 91.3 2.1 56 121-186 165-223 (314)
51 PRK10194 ferredoxin-type prote 98.7 5.1E-09 1.1E-13 82.7 1.8 53 128-185 107-159 (163)
52 PRK09898 hypothetical protein; 98.7 5E-09 1.1E-13 86.0 1.6 21 124-144 120-142 (208)
53 COG0437 HybA Fe-S-cluster-cont 98.7 6.1E-09 1.3E-13 84.3 2.0 59 121-191 96-163 (203)
54 TIGR03224 benzo_boxA benzoyl-C 98.7 5.4E-09 1.2E-13 94.1 1.6 54 120-183 5-58 (411)
55 PRK10194 ferredoxin-type prote 98.7 5E-09 1.1E-13 82.8 1.2 54 124-184 33-86 (163)
56 PF13484 Fer4_16: 4Fe-4S doubl 98.7 3.6E-09 7.8E-14 71.0 0.2 54 126-179 1-67 (67)
57 PRK14993 tetrathionate reducta 98.7 6E-09 1.3E-13 87.4 1.5 60 121-192 126-194 (244)
58 PF13247 Fer4_11: 4Fe-4S diclu 98.7 1.8E-09 3.9E-14 78.0 -1.5 53 121-185 36-97 (98)
59 PRK00783 DNA-directed RNA poly 98.7 4.9E-09 1.1E-13 89.0 0.7 70 120-199 165-237 (263)
60 TIGR02176 pyruv_ox_red pyruvat 98.7 8.8E-09 1.9E-13 102.9 2.3 67 120-186 678-763 (1165)
61 TIGR01660 narH nitrate reducta 98.6 8.4E-09 1.8E-13 92.0 1.5 55 123-185 179-235 (492)
62 COG1142 HycB Fe-S-cluster-cont 98.6 7.8E-09 1.7E-13 81.0 1.0 51 126-186 52-104 (165)
63 COG4656 RnfC Predicted NADH:ub 98.6 7.5E-10 1.6E-14 99.7 -6.1 96 126-222 366-461 (529)
64 PRK08493 NADH dehydrogenase su 98.6 1.3E-08 2.7E-13 98.2 1.8 66 118-185 134-225 (819)
65 PRK07118 ferredoxin; Validated 98.6 1.4E-08 3.1E-13 86.8 1.9 52 124-185 212-263 (280)
66 TIGR03478 DMSO_red_II_bet DMSO 98.6 1.2E-08 2.5E-13 87.6 1.3 53 122-186 159-220 (321)
67 PF13183 Fer4_8: 4Fe-4S diclus 98.6 2.2E-09 4.7E-14 69.7 -2.6 55 124-179 2-56 (57)
68 TIGR03478 DMSO_red_II_bet DMSO 98.6 1.1E-08 2.4E-13 87.7 0.8 56 122-185 126-183 (321)
69 COG1148 HdrA Heterodisulfide r 98.6 1.3E-08 2.8E-13 91.2 1.1 51 122-185 558-608 (622)
70 PRK10882 hydrogenase 2 protein 98.6 1.4E-08 3E-13 88.4 0.8 55 122-186 140-207 (328)
71 COG2221 DsrA Dissimilatory sul 98.6 1.7E-08 3.8E-13 86.1 1.3 50 118-177 165-214 (317)
72 TIGR03149 cyt_nit_nrfC cytochr 98.6 2E-08 4.4E-13 83.3 1.7 56 122-185 89-146 (225)
73 PRK10330 formate dehydrogenase 98.6 1.7E-08 3.8E-13 81.0 0.9 65 122-186 84-157 (181)
74 cd07030 RNAP_D D subunit of Ar 98.6 1.3E-08 2.8E-13 86.3 -0.0 65 124-197 168-235 (259)
75 TIGR03287 methan_mark_16 putat 98.5 1.7E-08 3.7E-13 89.1 0.3 52 122-186 299-352 (391)
76 COG2878 Predicted NADH:ubiquin 98.5 1.1E-08 2.3E-13 80.5 -1.2 59 122-189 112-170 (198)
77 PRK08318 dihydropyrimidine deh 98.5 2.6E-08 5.7E-13 90.0 1.1 59 121-186 338-400 (420)
78 TIGR00397 mauM_napG MauM/NapG 98.5 1.2E-07 2.6E-12 78.0 4.7 59 124-183 52-112 (213)
79 COG0437 HybA Fe-S-cluster-cont 98.5 4.4E-08 9.5E-13 79.3 2.0 54 124-185 66-121 (203)
80 TIGR02951 DMSO_dmsB DMSO reduc 98.5 2.5E-08 5.5E-13 78.6 0.3 22 123-144 93-114 (161)
81 PRK07118 ferredoxin; Validated 98.5 3.6E-08 7.8E-13 84.3 1.3 52 125-186 139-190 (280)
82 TIGR00397 mauM_napG MauM/NapG 98.5 4.4E-08 9.5E-13 80.6 1.7 60 122-183 128-196 (213)
83 TIGR01582 FDH-beta formate deh 98.5 2.9E-08 6.3E-13 84.8 0.4 53 122-186 121-182 (283)
84 TIGR00384 dhsB succinate dehyd 98.5 5.6E-09 1.2E-13 86.4 -4.3 108 72-179 82-209 (220)
85 PRK14993 tetrathionate reducta 98.4 5.4E-08 1.2E-12 81.7 1.1 54 124-186 97-152 (244)
86 TIGR01973 NuoG NADH-quinone ox 98.4 6.1E-08 1.3E-12 91.4 1.4 64 119-185 136-203 (603)
87 TIGR01582 FDH-beta formate deh 98.4 5.3E-08 1.2E-12 83.2 0.9 54 123-185 89-145 (283)
88 COG0479 FrdB Succinate dehydro 98.4 7.2E-09 1.6E-13 85.7 -4.5 105 74-179 89-213 (234)
89 PRK09476 napG quinol dehydroge 98.4 6.3E-08 1.4E-12 81.7 0.9 62 122-183 134-205 (254)
90 PRK09898 hypothetical protein; 98.4 8.4E-08 1.8E-12 78.7 1.5 54 120-185 149-202 (208)
91 PRK09129 NADH dehydrogenase su 98.4 8.5E-08 1.8E-12 92.9 1.6 66 119-185 138-205 (776)
92 TIGR03294 FrhG coenzyme F420 h 98.4 6.4E-08 1.4E-12 80.5 0.5 54 121-184 170-223 (228)
93 TIGR01660 narH nitrate reducta 98.4 1E-07 2.2E-12 85.2 1.6 54 121-186 210-272 (492)
94 PLN00129 succinate dehydrogena 98.4 9.7E-09 2.1E-13 87.2 -4.7 109 72-180 130-260 (276)
95 PRK12575 succinate dehydrogena 98.4 9.6E-09 2.1E-13 85.6 -4.8 109 72-180 89-217 (235)
96 TIGR03315 Se_ygfK putative sel 98.4 1.2E-07 2.6E-12 93.3 1.7 59 123-186 879-943 (1012)
97 PRK09326 F420H2 dehydrogenase 98.4 1.4E-07 3.1E-12 83.0 1.9 61 122-182 9-71 (341)
98 PRK12576 succinate dehydrogena 98.4 2.3E-08 4.9E-13 85.6 -3.2 110 71-180 94-222 (279)
99 PF12837 Fer4_6: 4Fe-4S bindin 98.4 1E-07 2.2E-12 50.8 0.4 22 160-181 3-24 (24)
100 PRK13795 hypothetical protein; 98.4 1E-07 2.2E-12 90.2 0.7 54 122-183 578-631 (636)
101 TIGR02951 DMSO_dmsB DMSO reduc 98.3 1.8E-07 3.9E-12 73.7 1.6 55 123-185 60-116 (161)
102 PRK09476 napG quinol dehydroge 98.3 1.9E-07 4.2E-12 78.8 1.8 60 124-184 58-119 (254)
103 PRK08640 sdhB succinate dehydr 98.3 1.7E-08 3.7E-13 84.9 -4.6 109 72-180 96-225 (249)
104 PRK13552 frdB fumarate reducta 98.3 2E-08 4.3E-13 84.0 -4.4 108 72-179 91-221 (239)
105 PRK10882 hydrogenase 2 protein 98.3 2.1E-07 4.5E-12 81.2 1.7 54 123-184 108-163 (328)
106 PRK10330 formate dehydrogenase 98.3 1.8E-07 3.9E-12 75.1 1.2 52 124-185 55-108 (181)
107 PRK12386 fumarate reductase ir 98.3 1.9E-08 4.2E-13 84.5 -4.6 110 71-180 87-216 (251)
108 PTZ00305 NADH:ubiquinone oxido 98.3 2.3E-07 5E-12 78.7 1.8 63 120-186 207-275 (297)
109 PRK07570 succinate dehydrogena 98.3 2.7E-08 5.9E-13 83.7 -3.9 59 122-180 154-228 (250)
110 PF00037 Fer4: 4Fe-4S binding 98.3 2.1E-07 4.6E-12 49.6 0.9 22 161-182 3-24 (24)
111 PRK12769 putative oxidoreducta 98.3 2.7E-07 5.9E-12 87.8 2.2 64 121-189 81-150 (654)
112 PRK07860 NADH dehydrogenase su 98.3 2.2E-07 4.8E-12 90.2 1.6 63 120-185 145-211 (797)
113 PRK08166 NADH dehydrogenase su 98.3 1.9E-07 4E-12 91.4 1.0 64 119-185 143-210 (847)
114 PRK09853 putative selenate red 98.3 2.9E-07 6.2E-12 90.4 2.3 65 122-190 883-952 (1019)
115 PRK12771 putative glutamate sy 98.3 2.2E-07 4.9E-12 86.9 1.4 56 122-185 501-562 (564)
116 PRK09130 NADH dehydrogenase su 98.3 2.2E-07 4.8E-12 88.7 1.3 63 120-185 140-206 (687)
117 PRK12385 fumarate reductase ir 98.3 1.7E-08 3.7E-13 84.7 -5.6 109 71-179 90-218 (244)
118 PRK15449 ferredoxin-like prote 98.3 2.9E-07 6.2E-12 65.7 1.4 42 131-181 37-78 (95)
119 PF12837 Fer4_6: 4Fe-4S bindin 98.3 1.7E-07 3.8E-12 49.9 -0.0 22 121-142 3-24 (24)
120 PRK12577 succinate dehydrogena 98.3 3.2E-08 6.8E-13 86.6 -4.8 109 72-180 96-225 (329)
121 TIGR02066 dsrB sulfite reducta 98.2 3.5E-07 7.7E-12 80.3 1.6 50 127-182 183-232 (341)
122 COG1142 HycB Fe-S-cluster-cont 98.2 2.3E-07 5E-12 72.8 0.2 61 121-186 78-141 (165)
123 TIGR03290 CoB_CoM_SS_C CoB--Co 98.2 4E-07 8.8E-12 70.4 1.5 57 125-181 2-63 (144)
124 TIGR01945 rnfC electron transp 98.2 4.6E-07 1E-11 82.2 1.8 57 123-179 361-417 (435)
125 TIGR03336 IOR_alpha indolepyru 98.2 5.8E-07 1.3E-11 84.7 1.9 50 119-181 544-595 (595)
126 PRK12809 putative oxidoreducta 98.2 8.1E-07 1.8E-11 84.4 2.1 50 122-185 82-138 (639)
127 PRK05950 sdhB succinate dehydr 98.1 4.9E-08 1.1E-12 81.4 -5.7 109 71-179 85-213 (232)
128 COG1034 NuoG NADH dehydrogenas 98.1 7.7E-07 1.7E-11 84.2 0.7 72 122-195 141-214 (693)
129 PRK12769 putative oxidoreducta 98.1 1.2E-06 2.6E-11 83.4 1.9 52 124-185 53-106 (654)
130 PF00037 Fer4: 4Fe-4S binding 98.1 7.3E-07 1.6E-11 47.5 -0.0 22 122-143 3-24 (24)
131 PRK12809 putative oxidoreducta 98.1 1.2E-06 2.5E-11 83.3 1.0 54 123-186 52-107 (639)
132 PF13534 Fer4_17: 4Fe-4S diclu 98.1 8.2E-07 1.8E-11 58.3 -0.0 54 126-179 1-59 (61)
133 TIGR02745 ccoG_rdxA_fixG cytoc 98.0 1.6E-06 3.5E-11 78.3 1.2 43 124-182 230-272 (434)
134 COG1245 Predicted ATPase, RNas 98.0 1.4E-06 3.1E-11 78.0 0.6 55 122-184 8-70 (591)
135 TIGR00314 cdhA CO dehydrogenas 98.0 2.1E-06 4.6E-11 81.7 0.9 58 122-180 396-453 (784)
136 PRK00941 acetyl-CoA decarbonyl 97.9 2.6E-06 5.7E-11 81.1 0.8 58 122-180 401-458 (781)
137 TIGR00276 iron-sulfur cluster 97.9 4.2E-06 9E-11 71.8 2.0 58 124-181 158-226 (282)
138 cd01916 ACS_1 Acetyl-CoA synth 97.9 2.2E-06 4.9E-11 81.4 -0.3 58 122-180 362-419 (731)
139 PRK13409 putative ATPase RIL; 97.9 2.9E-06 6.4E-11 79.8 0.4 54 122-183 7-68 (590)
140 TIGR02486 RDH reductive dehalo 97.9 1.1E-05 2.3E-10 70.3 3.4 55 125-179 205-279 (314)
141 PF12798 Fer4_3: 4Fe-4S bindin 97.9 4.8E-06 1E-10 39.2 0.6 15 166-180 1-15 (15)
142 PRK11168 glpC sn-glycerol-3-ph 97.9 5.6E-06 1.2E-10 74.1 1.7 57 124-180 6-70 (396)
143 TIGR00273 iron-sulfur cluster- 97.8 9.3E-06 2E-10 73.5 1.5 59 122-180 290-359 (432)
144 PRK09193 indolepyruvate ferred 97.7 4.7E-06 1E-10 82.8 -1.4 53 119-179 637-692 (1165)
145 TIGR01936 nqrA NADH:ubiquinone 97.7 9.5E-06 2.1E-10 73.6 0.6 56 124-179 372-429 (447)
146 TIGR03379 glycerol3P_GlpC glyc 97.7 1.5E-05 3.3E-10 71.4 1.6 57 124-180 4-68 (397)
147 PRK11274 glcF glycolate oxidas 97.7 8.4E-06 1.8E-10 73.3 -0.2 57 124-180 22-89 (407)
148 PRK06259 succinate dehydrogena 97.7 1.2E-05 2.7E-10 74.0 0.6 59 122-180 130-201 (486)
149 PRK05352 Na(+)-translocating N 97.6 1.4E-05 3E-10 72.7 0.7 59 124-183 373-433 (448)
150 TIGR02910 sulfite_red_A sulfit 97.6 1.7E-05 3.7E-10 69.2 1.1 18 162-179 299-316 (334)
151 PRK13030 2-oxoacid ferredoxin 97.6 8.3E-06 1.8E-10 81.2 -1.3 53 119-179 623-678 (1159)
152 COG1150 HdrC Heterodisulfide r 97.6 1.7E-05 3.6E-10 63.5 0.4 56 125-181 39-100 (195)
153 COG0247 GlpC Fe-S oxidoreducta 97.6 8.8E-06 1.9E-10 72.4 -1.5 58 124-181 8-75 (388)
154 PF12797 Fer4_2: 4Fe-4S bindin 97.6 2.6E-05 5.6E-10 40.2 0.8 18 160-177 4-21 (22)
155 COG1139 Uncharacterized conser 97.6 2.1E-05 4.5E-10 69.9 0.6 56 125-180 308-374 (459)
156 COG2440 FixX Ferredoxin-like p 97.5 1.7E-05 3.7E-10 56.3 -0.1 52 123-183 31-85 (99)
157 PF12797 Fer4_2: 4Fe-4S bindin 97.5 2.7E-05 5.8E-10 40.2 0.3 19 121-139 4-22 (22)
158 PF12798 Fer4_3: 4Fe-4S bindin 97.5 2.9E-05 6.3E-10 36.5 0.4 15 127-141 1-15 (15)
159 PRK15055 anaerobic sulfite red 97.5 3.1E-05 6.7E-10 68.0 0.3 17 163-179 306-322 (344)
160 PRK13029 2-oxoacid ferredoxin 97.4 2.9E-05 6.2E-10 77.3 -0.7 52 119-178 651-705 (1186)
161 COG1600 Uncharacterized Fe-S p 97.3 7.8E-05 1.7E-09 65.1 1.5 56 124-179 184-249 (337)
162 COG1152 CdhA CO dehydrogenase/ 97.3 4.4E-05 9.6E-10 70.0 -0.3 56 124-181 399-455 (772)
163 PF14697 Fer4_21: 4Fe-4S diclu 97.3 7.3E-05 1.6E-09 48.8 0.6 23 122-144 36-59 (59)
164 TIGR02064 dsrA sulfite reducta 97.3 9.2E-05 2E-09 66.4 1.5 44 131-184 248-291 (402)
165 PF12800 Fer4_4: 4Fe-4S bindin 97.3 0.00011 2.3E-09 35.7 0.8 15 125-139 2-16 (17)
166 COG1143 NuoI Formate hydrogenl 97.2 9.7E-05 2.1E-09 58.7 0.8 31 117-147 87-117 (172)
167 PRK13984 putative oxidoreducta 97.2 0.0001 2.2E-09 69.7 1.0 26 121-146 82-107 (604)
168 PRK12387 formate hydrogenlyase 97.1 0.00017 3.6E-09 57.9 1.2 53 126-185 7-59 (180)
169 PF12800 Fer4_4: 4Fe-4S bindin 97.1 0.00022 4.8E-09 34.6 0.8 16 164-179 2-17 (17)
170 TIGR02163 napH_ ferredoxin-typ 97.1 0.0002 4.4E-09 60.6 1.0 50 127-181 168-218 (255)
171 PRK09477 napH quinol dehydroge 97.0 0.00018 3.9E-09 61.4 0.5 50 128-182 176-226 (271)
172 PF13187 Fer4_9: 4Fe-4S diclus 97.0 0.00022 4.8E-09 45.5 0.6 20 123-142 36-55 (55)
173 TIGR02484 CitB CitB domain pro 97.0 0.00016 3.5E-09 63.7 -0.3 52 124-181 13-65 (372)
174 PF13484 Fer4_16: 4Fe-4S doubl 97.0 0.00028 6.2E-09 46.9 0.9 21 165-185 1-21 (67)
175 COG1141 Fer Ferredoxin [Energy 96.8 0.00026 5.6E-09 47.4 -0.3 61 122-183 5-66 (68)
176 KOG3256 NADH:ubiquinone oxidor 96.8 0.00047 1E-08 53.7 1.1 32 115-146 140-171 (212)
177 PF13370 Fer4_13: 4Fe-4S singl 96.8 0.00042 9E-09 45.1 0.6 52 123-182 2-57 (58)
178 PF12838 Fer4_7: 4Fe-4S diclus 96.8 0.00034 7.3E-09 44.2 -0.0 22 165-186 1-22 (52)
179 PRK08222 hydrogenase 4 subunit 96.7 0.00074 1.6E-08 54.2 1.2 25 122-146 70-94 (181)
180 PF13459 Fer4_15: 4Fe-4S singl 96.7 0.00042 9.1E-09 46.0 -0.2 60 122-182 3-64 (65)
181 TIGR02745 ccoG_rdxA_fixG cytoc 96.6 0.00076 1.7E-08 61.2 1.2 55 126-180 177-247 (434)
182 PRK15033 tricarballylate utili 96.6 0.00055 1.2E-08 60.7 0.3 50 124-178 32-81 (389)
183 COG1145 NapF Ferredoxin [Energ 96.6 0.00072 1.6E-08 48.1 0.6 24 160-183 25-48 (99)
184 TIGR02936 fdxN_nitrog ferredox 96.4 0.00089 1.9E-08 47.3 0.2 27 158-184 15-41 (91)
185 COG1144 Pyruvate:ferredoxin ox 96.4 0.0011 2.4E-08 46.5 0.4 25 122-146 63-87 (91)
186 PRK09626 oorD 2-oxoglutarate-a 96.3 0.0014 2.9E-08 47.7 0.8 28 158-185 10-37 (103)
187 COG1146 Ferredoxin [Energy pro 96.3 0.0011 2.4E-08 44.3 0.3 27 120-146 36-62 (68)
188 PRK08348 NADH-plastoquinone ox 96.2 0.002 4.4E-08 48.1 1.3 27 158-184 36-62 (120)
189 PF13237 Fer4_10: 4Fe-4S diclu 96.2 0.0019 4.1E-08 40.6 1.0 20 159-178 2-21 (52)
190 KOG0063 RNAse L inhibitor, ABC 96.1 0.0013 2.9E-08 59.0 -0.1 21 162-182 48-68 (592)
191 PF13746 Fer4_18: 4Fe-4S diclu 96.1 0.0025 5.5E-08 42.9 1.1 18 162-179 48-65 (69)
192 PLN00071 photosystem I subunit 96.1 0.0026 5.7E-08 43.9 1.1 25 160-184 5-29 (81)
193 PRK09623 vorD 2-ketoisovalerat 96.0 0.004 8.6E-08 45.5 1.9 27 158-184 45-71 (105)
194 PRK06273 ferredoxin; Provision 96.0 0.0029 6.4E-08 50.0 1.2 28 158-185 43-70 (165)
195 TIGR02179 PorD_KorD 2-oxoacid: 95.9 0.0038 8.1E-08 42.7 1.4 27 158-184 19-45 (78)
196 CHL00065 psaC photosystem I su 95.9 0.0034 7.4E-08 43.4 1.1 26 160-185 5-30 (81)
197 COG1035 FrhB Coenzyme F420-red 95.9 0.0033 7.2E-08 54.9 1.2 46 123-178 3-48 (332)
198 COG2221 DsrA Dissimilatory sul 95.9 0.0024 5.2E-08 55.0 0.2 27 159-185 167-193 (317)
199 TIGR02494 PFLE_PFLC glycyl-rad 95.8 0.0044 9.5E-08 53.3 1.5 25 158-182 42-66 (295)
200 COG1453 Predicted oxidoreducta 95.7 0.0025 5.5E-08 55.9 -0.1 17 163-179 350-366 (391)
201 PRK08493 NADH dehydrogenase su 95.7 0.0052 1.1E-07 60.0 1.9 23 124-146 203-225 (819)
202 COG0348 NapH Polyferredoxin [E 95.7 0.0053 1.2E-07 55.1 1.6 93 94-197 181-278 (386)
203 TIGR00403 ndhI NADH-plastoquin 95.6 0.0048 1E-07 49.6 1.1 27 120-146 97-123 (183)
204 TIGR03048 PS_I_psaC photosyste 95.6 0.0055 1.2E-07 42.3 1.1 24 162-185 6-29 (80)
205 COG1140 NarY Nitrate reductase 95.3 0.0069 1.5E-07 53.3 1.1 49 126-182 182-232 (513)
206 COG1941 FrhG Coenzyme F420-red 95.3 0.0066 1.4E-07 50.2 0.8 48 122-181 186-234 (247)
207 PF13746 Fer4_18: 4Fe-4S diclu 95.2 0.0068 1.5E-07 40.8 0.7 18 123-140 48-65 (69)
208 PRK06991 ferredoxin; Provision 95.2 0.0081 1.8E-07 51.2 1.2 26 159-184 80-105 (270)
209 PRK05888 NADH dehydrogenase su 95.2 0.011 2.5E-07 46.5 2.0 22 164-185 58-79 (164)
210 CHL00014 ndhI NADH dehydrogena 95.2 0.0086 1.9E-07 47.4 1.1 27 120-146 94-120 (167)
211 TIGR01971 NuoI NADH-quinone ox 95.0 0.0099 2.2E-07 44.3 1.0 26 122-147 79-104 (122)
212 PRK09625 porD pyruvate flavodo 95.0 0.0083 1.8E-07 45.7 0.5 28 158-185 53-80 (133)
213 TIGR02060 aprB adenosine phosp 94.9 0.011 2.3E-07 45.1 1.0 26 160-185 4-34 (132)
214 PRK09624 porD pyuvate ferredox 94.9 0.0094 2E-07 43.5 0.6 24 122-145 78-101 (105)
215 PRK13409 putative ATPase RIL; 94.8 0.0091 2E-07 56.5 0.5 25 121-145 45-69 (590)
216 PRK02651 photosystem I subunit 94.8 0.012 2.7E-07 40.5 1.0 24 123-146 44-67 (81)
217 TIGR01944 rnfB electron transp 94.7 0.014 3.1E-07 46.0 1.2 27 159-185 108-134 (165)
218 COG1245 Predicted ATPase, RNas 94.6 0.01 2.2E-07 53.9 0.3 25 121-145 46-70 (591)
219 KOG0063 RNAse L inhibitor, ABC 94.6 0.0087 1.9E-07 53.9 -0.2 55 122-185 47-101 (592)
220 PRK09326 F420H2 dehydrogenase 94.4 0.017 3.6E-07 51.0 1.1 27 160-186 8-34 (341)
221 PRK05113 electron transport co 94.3 0.018 3.9E-07 46.6 1.1 27 159-185 109-135 (191)
222 PRK08764 ferredoxin; Provision 94.1 0.02 4.3E-07 43.7 0.8 23 122-144 112-134 (135)
223 COG1149 MinD superfamily P-loo 94.1 0.015 3.2E-07 49.3 0.1 25 158-182 63-87 (284)
224 TIGR02512 Fe_only_hydrog hydro 94.1 0.018 3.8E-07 51.5 0.6 23 160-182 3-25 (374)
225 TIGR02066 dsrB sulfite reducta 93.8 0.021 4.5E-07 50.4 0.5 24 120-143 209-232 (341)
226 PRK12814 putative NADPH-depend 93.7 0.022 4.9E-07 54.5 0.5 19 120-138 611-629 (652)
227 TIGR02700 flavo_MJ0208 archaeo 93.6 0.025 5.5E-07 47.2 0.7 27 159-185 143-169 (234)
228 TIGR00402 napF ferredoxin-type 93.6 0.026 5.6E-07 40.8 0.6 23 122-144 63-85 (101)
229 PRK15449 ferredoxin-like prote 93.5 0.027 5.8E-07 40.3 0.5 22 121-142 57-78 (95)
230 TIGR03294 FrhG coenzyme F420 h 93.4 0.028 6.2E-07 46.7 0.6 27 159-185 169-195 (228)
231 TIGR03224 benzo_boxA benzoyl-C 93.3 0.038 8.2E-07 50.0 1.3 28 158-185 4-31 (411)
232 COG1141 Fer Ferredoxin [Energy 93.3 0.027 5.9E-07 37.7 0.3 22 159-180 3-24 (68)
233 TIGR02486 RDH reductive dehalo 93.3 0.036 7.9E-07 48.3 1.1 22 164-185 205-226 (314)
234 PLN02805 D-lactate dehydrogena 93.1 0.27 5.9E-06 46.2 6.6 73 18-99 458-544 (555)
235 COG2878 Predicted NADH:ubiquin 93.0 0.032 7E-07 44.4 0.3 29 158-186 109-137 (198)
236 TIGR02912 sulfite_red_C sulfit 93.0 0.035 7.5E-07 48.4 0.6 26 121-146 197-222 (314)
237 PRK14028 pyruvate ferredoxin o 92.9 0.038 8.3E-07 48.0 0.7 24 122-145 286-309 (312)
238 PF13459 Fer4_15: 4Fe-4S singl 92.7 0.044 9.5E-07 36.2 0.7 19 160-178 2-20 (65)
239 TIGR00276 iron-sulfur cluster 92.7 0.053 1.2E-06 46.6 1.3 21 163-183 158-178 (282)
240 PF02913 FAD-oxidase_C: FAD li 92.6 0.16 3.4E-06 41.7 4.0 73 18-99 158-244 (248)
241 TIGR00387 glcD glycolate oxida 92.5 0.46 9.9E-06 43.0 7.1 72 18-99 324-410 (413)
242 COG3383 Uncharacterized anaero 92.4 0.044 9.5E-07 52.4 0.5 23 122-144 189-211 (978)
243 PF13370 Fer4_13: 4Fe-4S singl 92.2 0.055 1.2E-06 35.0 0.6 18 162-179 2-19 (58)
244 COG1140 NarY Nitrate reductase 92.1 0.28 6E-06 43.5 4.9 48 121-181 210-266 (513)
245 PRK08318 dihydropyrimidine deh 92.0 0.05 1.1E-06 49.3 0.3 26 122-147 374-400 (420)
246 PRK07569 bidirectional hydroge 91.9 0.06 1.3E-06 44.9 0.7 23 124-146 189-211 (234)
247 COG2768 Uncharacterized Fe-S c 91.7 0.071 1.5E-06 45.9 0.9 26 159-184 188-213 (354)
248 TIGR03287 methan_mark_16 putat 91.4 0.058 1.2E-06 48.2 0.0 26 122-147 327-352 (391)
249 TIGR01973 NuoG NADH-quinone ox 91.3 0.092 2E-06 49.8 1.3 21 126-146 183-203 (603)
250 PF13183 Fer4_8: 4Fe-4S diclus 91.2 0.064 1.4E-06 34.1 0.1 16 125-140 41-56 (57)
251 COG4231 Indolepyruvate ferredo 91.2 0.074 1.6E-06 49.9 0.5 28 119-146 602-629 (640)
252 cd07032 RNAP_I_II_AC40 AC40 su 91.0 0.064 1.4E-06 46.2 -0.1 72 125-201 195-272 (291)
253 TIGR02176 pyruv_ox_red pyruvat 90.8 0.091 2E-06 53.5 0.8 25 159-183 678-702 (1165)
254 PRK12771 putative glutamate sy 90.7 0.085 1.8E-06 49.6 0.4 25 122-146 538-562 (564)
255 PF13534 Fer4_17: 4Fe-4S diclu 90.6 0.09 2E-06 33.9 0.4 17 124-140 43-59 (61)
256 PRK13795 hypothetical protein; 90.5 0.11 2.4E-06 49.6 1.0 26 160-185 577-602 (636)
257 PRK00783 DNA-directed RNA poly 90.3 0.14 2.9E-06 43.5 1.3 24 163-186 168-191 (263)
258 COG1600 Uncharacterized Fe-S p 89.6 0.14 3E-06 45.0 0.8 21 164-184 185-205 (337)
259 PRK07860 NADH dehydrogenase su 89.4 0.17 3.7E-06 49.7 1.4 21 126-146 191-211 (797)
260 PRK09129 NADH dehydrogenase su 88.5 0.25 5.3E-06 48.4 1.8 21 126-146 185-205 (776)
261 PRK09130 NADH dehydrogenase su 88.3 0.25 5.5E-06 47.7 1.6 21 126-146 186-206 (687)
262 PRK08166 NADH dehydrogenase su 88.0 0.19 4.2E-06 49.6 0.7 21 126-146 190-210 (847)
263 cd07030 RNAP_D D subunit of Ar 87.6 0.24 5.2E-06 41.9 1.0 23 164-186 169-191 (259)
264 PRK05035 electron transport co 86.8 0.25 5.3E-06 47.7 0.7 21 162-182 368-388 (695)
265 COG1035 FrhB Coenzyme F420-red 86.5 0.33 7.1E-06 42.6 1.2 25 161-186 2-26 (332)
266 PRK07570 succinate dehydrogena 86.4 0.28 6.1E-06 41.4 0.7 21 161-181 154-174 (250)
267 TIGR03290 CoB_CoM_SS_C CoB--Co 86.4 0.26 5.7E-06 37.8 0.5 16 164-179 2-17 (144)
268 TIGR03315 Se_ygfK putative sel 86.0 0.3 6.5E-06 49.0 0.8 21 126-146 922-942 (1012)
269 PRK11230 glycolate oxidase sub 85.7 1 2.2E-05 41.9 4.0 72 18-99 381-467 (499)
270 TIGR02910 sulfite_red_A sulfit 85.1 0.35 7.6E-06 42.5 0.7 18 123-140 299-316 (334)
271 PRK12814 putative NADPH-depend 85.1 0.48 1E-05 45.5 1.7 20 158-177 610-629 (652)
272 TIGR03336 IOR_alpha indolepyru 84.7 0.33 7.1E-06 46.1 0.4 20 122-142 576-595 (595)
273 PRK09853 putative selenate red 83.1 0.45 9.8E-06 47.7 0.6 22 124-145 925-946 (1019)
274 PRK15055 anaerobic sulfite red 82.7 0.5 1.1E-05 41.7 0.7 17 124-140 306-322 (344)
275 PRK12576 succinate dehydrogena 82.3 0.5 1.1E-05 40.6 0.5 20 162-181 150-169 (279)
276 TIGR01945 rnfC electron transp 82.2 0.59 1.3E-05 42.7 1.0 20 162-181 361-380 (435)
277 TIGR00384 dhsB succinate dehyd 82.0 0.46 1E-05 39.2 0.2 20 162-181 136-155 (220)
278 PRK08640 sdhB succinate dehydr 81.9 0.5 1.1E-05 39.9 0.4 20 162-181 150-169 (249)
279 TIGR02064 dsrA sulfite reducta 81.3 0.54 1.2E-05 42.5 0.4 26 119-145 266-291 (402)
280 KOG3049 Succinate dehydrogenas 80.9 0.29 6.3E-06 40.1 -1.3 55 125-179 192-264 (288)
281 TIGR00273 iron-sulfur cluster- 80.6 0.53 1.1E-05 43.0 0.0 19 162-180 291-309 (432)
282 COG1453 Predicted oxidoreducta 80.2 0.88 1.9E-05 40.4 1.3 18 123-140 349-366 (391)
283 PRK11168 glpC sn-glycerol-3-ph 80.0 0.64 1.4E-05 41.6 0.4 20 163-182 6-25 (396)
284 PRK12386 fumarate reductase ir 79.5 0.67 1.5E-05 39.1 0.3 20 162-181 140-159 (251)
285 COG1139 Uncharacterized conser 78.6 0.72 1.6E-05 41.7 0.3 15 165-179 309-323 (459)
286 PRK13552 frdB fumarate reducta 78.0 0.82 1.8E-05 38.3 0.4 20 162-181 147-166 (239)
287 PTZ00305 NADH:ubiquinone oxido 77.8 0.86 1.9E-05 39.2 0.5 19 160-178 208-226 (297)
288 COG4656 RnfC Predicted NADH:ub 77.2 0.92 2E-05 41.9 0.5 17 165-181 366-382 (529)
289 KOG1232 Proteins containing th 76.9 1.6 3.6E-05 38.9 2.0 71 18-99 423-506 (511)
290 COG1150 HdrC Heterodisulfide r 76.7 0.81 1.8E-05 36.9 0.0 19 163-181 38-56 (195)
291 TIGR01936 nqrA NADH:ubiquinone 75.8 1.1 2.4E-05 41.1 0.6 18 164-181 373-390 (447)
292 PRK12575 succinate dehydrogena 75.6 0.87 1.9E-05 38.1 -0.1 20 162-181 142-161 (235)
293 PLN00129 succinate dehydrogena 75.4 1 2.2E-05 38.6 0.3 17 164-180 187-203 (276)
294 PRK05352 Na(+)-translocating N 74.4 1.2 2.6E-05 40.8 0.6 18 163-180 373-390 (448)
295 COG1034 NuoG NADH dehydrogenas 74.3 1.5 3.2E-05 42.3 1.1 18 161-178 141-158 (693)
296 PRK12810 gltD glutamate syntha 74.3 0.8 1.7E-05 42.1 -0.7 22 123-144 42-65 (471)
297 PRK05950 sdhB succinate dehydr 74.0 1.4 2.9E-05 36.7 0.7 18 124-141 197-214 (232)
298 COG0479 FrdB Succinate dehydro 73.9 1.1 2.5E-05 37.3 0.2 21 161-181 139-159 (234)
299 TIGR03379 glycerol3P_GlpC glyc 73.5 1.3 2.7E-05 39.8 0.4 18 164-181 5-22 (397)
300 PRK12385 fumarate reductase ir 73.4 1.3 2.9E-05 37.1 0.5 17 124-140 202-218 (244)
301 TIGR01318 gltD_gamma_fam gluta 73.3 0.91 2E-05 41.7 -0.5 18 123-140 38-57 (467)
302 PRK12577 succinate dehydrogena 73.0 1.2 2.6E-05 39.1 0.2 19 163-181 151-169 (329)
303 COG1152 CdhA CO dehydrogenase/ 70.7 1.4 3.1E-05 41.3 0.1 17 124-140 437-453 (772)
304 cd01916 ACS_1 Acetyl-CoA synth 69.6 1.5 3.3E-05 42.5 0.1 19 162-180 363-381 (731)
305 TIGR00314 cdhA CO dehydrogenas 69.1 1.9 4.1E-05 42.1 0.5 17 163-179 398-414 (784)
306 PRK11274 glcF glycolate oxidas 66.9 2.4 5.1E-05 38.1 0.7 17 124-140 72-88 (407)
307 PRK00941 acetyl-CoA decarbonyl 66.8 2.1 4.5E-05 41.8 0.3 18 124-141 441-458 (781)
308 PRK15033 tricarballylate utili 66.2 2.2 4.8E-05 38.2 0.4 16 124-139 66-81 (389)
309 COG2440 FixX Ferredoxin-like p 66.1 2 4.2E-05 30.8 0.0 24 121-144 61-85 (99)
310 PRK06259 succinate dehydrogena 66.0 2.3 5E-05 39.2 0.5 20 162-181 131-150 (486)
311 COG0247 GlpC Fe-S oxidoreducta 65.6 2.1 4.5E-05 37.9 0.1 20 163-182 8-27 (388)
312 COG1941 FrhG Coenzyme F420-red 63.9 3.2 6.9E-05 34.7 0.9 21 165-185 191-211 (247)
313 COG0493 GltD NADPH-dependent g 62.7 2 4.3E-05 39.5 -0.6 21 123-143 21-42 (457)
314 COG4624 Iron only hydrogenase 59.2 3.7 8E-05 36.7 0.5 52 125-185 2-55 (411)
315 PF06902 Fer4_19: Divergent 4F 57.8 3.9 8.5E-05 26.9 0.3 20 120-139 8-27 (64)
316 PRK12831 putative oxidoreducta 56.1 3.2 6.9E-05 38.1 -0.5 19 123-141 38-58 (464)
317 KOG2282 NADH-ubiquinone oxidor 54.1 1.7 3.6E-05 40.2 -2.5 61 124-185 174-236 (708)
318 TIGR01316 gltA glutamate synth 53.4 3.6 7.8E-05 37.5 -0.6 18 124-141 25-46 (449)
319 PF14691 Fer4_20: Dihydroprymi 50.8 1.4 3.1E-05 32.3 -2.9 18 123-140 20-39 (111)
320 PRK12778 putative bifunctional 49.9 4.3 9.3E-05 39.6 -0.7 19 123-141 327-347 (752)
321 PRK11749 dihydropyrimidine deh 49.9 4.1 8.9E-05 37.2 -0.8 19 123-141 38-58 (457)
322 PRK12775 putative trifunctiona 49.5 4.6 0.0001 40.9 -0.6 18 124-141 330-349 (1006)
323 PRK12779 putative bifunctional 48.2 4.5 9.8E-05 40.7 -0.8 21 123-143 186-220 (944)
324 PRK13030 2-oxoacid ferredoxin 45.1 7.2 0.00016 40.0 0.0 20 120-139 657-677 (1159)
325 KOG2415 Electron transfer flav 42.6 13 0.00028 34.1 1.2 51 131-184 558-608 (621)
326 TIGR02484 CitB CitB domain pro 42.4 8.8 0.00019 34.3 0.2 17 163-179 13-29 (372)
327 PRK09193 indolepyruvate ferred 40.6 9.5 0.00021 39.1 0.1 21 120-140 671-692 (1165)
328 PRK13029 2-oxoacid ferredoxin 38.4 11 0.00023 38.8 0.1 20 120-139 685-705 (1186)
329 TIGR01317 GOGAT_sm_gam glutama 37.2 9.9 0.00021 35.1 -0.3 19 123-141 40-62 (485)
330 COG0277 GlcD FAD/FMN-containin 33.1 1.9E+02 0.0041 26.0 7.3 19 81-99 433-451 (459)
331 COG0348 NapH Polyferredoxin [E 32.4 15 0.00033 33.0 0.0 51 125-180 177-228 (386)
332 PF04885 Stig1: Stigma-specifi 31.6 27 0.00059 26.7 1.3 42 129-181 86-127 (136)
333 KOG4258 Insulin/growth factor 30.6 19 0.00041 35.6 0.4 24 5-28 94-117 (1025)
334 TIGR03278 methan_mark_10 putat 28.7 27 0.00058 31.7 1.0 38 167-204 27-70 (404)
335 PF12801 Fer4_5: 4Fe-4S bindin 24.5 25 0.00054 21.2 -0.0 13 170-182 22-34 (48)
336 cd07031 RNAP_II_RPB3 RPB3 subu 23.3 26 0.00057 29.8 -0.1 38 162-199 198-240 (265)
337 COG3592 Uncharacterized conser 22.2 37 0.0008 22.7 0.5 18 122-139 20-37 (74)
338 KOG1231 Proteins containing th 21.9 96 0.0021 28.6 3.1 78 13-99 403-492 (505)
339 KOG4258 Insulin/growth factor 20.4 43 0.00094 33.3 0.7 36 131-182 304-340 (1025)
No 1
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=100.00 E-value=5.5e-38 Score=239.47 Aligned_cols=205 Identities=74% Similarity=1.197 Sum_probs=177.5
Q ss_pred HhhhhHhhhhccCCcccCcccccCCCCCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCC
Q 027264 15 ARHLAVSGQALQGSQHYGLRFNAHPYSSYFPSKKDDEEKEQLLKEISKDWSSVFERSINMLFLTEMVRGLGLTLKYFFDK 94 (226)
Q Consensus 15 ~~~~~i~Gha~~gn~~~~~~~~~H~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~l~~~~~~~f~~ 94 (226)
..+.+++|.++.|. +|.+. +|+ .....+.+.++. -++++...+...++.......+.+++++++++++++|+.
T Consensus 8 ~~~~~~~gq~~~g~--~~~r~-~~~---~~~~~~~~y~~v-~~~e~~~~~~~~~n~~~~tl~~te~~rGf~itLsh~f~~ 80 (212)
T KOG3256|consen 8 ALTLALSGQRLQGS--HGVRL-LSS---NYGSVKDDYKYV-NMKEMSPDITGVMNRGQQTLFATELIRGFMITLSHTFRE 80 (212)
T ss_pred HHHHHhccCcccCC--ccccc-chh---hhccccccceee-chhccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhhcCC
Confidence 33788899998888 22222 122 122223333332 236666666677777777888999999999999999999
Q ss_pred cceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhh
Q 027264 95 KVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQE 174 (226)
Q Consensus 95 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~ 174 (226)
++++|||+++++++++|+|.|.+.+++...++||.|..|+.+||..+|+++...+..+++....+.+|...|+.||.|+.
T Consensus 81 p~TInYPfEKgplS~RFRGehalrRyp~geerCIACklCeavCPaqaitieae~r~dgsrRttrYdIDmtkCIyCG~CqE 160 (212)
T KOG3256|consen 81 PVTINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEERTDGSRRTTRYDIDMTKCIYCGFCQE 160 (212)
T ss_pred CeeecCccccCCCCcccccchhhhcCCCcchhhhhHHHHHHhCCcccceeeceecCCccccceeecccceeeeeecchhh
Confidence 99999999999999999999999999999999999999999999999999998888888888899999999999999999
Q ss_pred cCcccccccCCCcccchhcHHHhhcCHHHHhhcCCCchHHHHHHhhhhcccC
Q 027264 175 ACPVDAIVEGPNFEYSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 226 (226)
Q Consensus 175 ~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (226)
+||++||..++.|+++++++++++|+++.+...|+.|+..++.|+|.|-|||
T Consensus 161 aCPvdaivegpnfEfsTetheELlYnkekLl~ngd~Wese~a~N~~~~~lyr 212 (212)
T KOG3256|consen 161 ACPVDAIVEGPNFEFSTETHEELLYNKEKLLTNGDRWESEIAKNLQAELLYR 212 (212)
T ss_pred hCCccceeccCCceeccccHHHHhhhHHHHhhccccccchhhhcccchhhcC
Confidence 9999999999999999999999999999999999999999999999999997
No 2
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=99.93 E-value=1.6e-26 Score=182.35 Aligned_cols=130 Identities=51% Similarity=0.999 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHhcCCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhc-cCCcccc
Q 027264 79 EMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERE-DGSRRTT 157 (226)
Q Consensus 79 ~~~~~l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-~~~~~~~ 157 (226)
+++.++...++++|++..+..||+++...+++|+|.+.+. .++||+|+.|+.+||++||.+....+. .+.+...
T Consensus 14 ~~~~~l~~~~K~~fk~~vT~~YP~e~~~~~~rfRG~~~l~-----~~~CIgC~lCa~iCP~~aI~m~~~~~~~~g~~~~~ 88 (172)
T COG1143 14 DFLKGLWTTLKNLFKKPVTIEYPEEKIPLSPRFRGRHVLD-----RDKCIGCGLCANICPANAITMETAERKVDGRKKPK 88 (172)
T ss_pred HHHHHHHHHHHHHhCCCchhhCccccCCCCCCccceeecc-----ccCCcchhHHHhhCCcCceEEEEcccCCCCccccc
Confidence 7889999999999999999999999999999999998754 456999999999999999999877665 4666777
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHHHHhhcCCCchH
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKEKLLENGDRWET 213 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 213 (226)
.+.+|...|++||.|+++||++||.+++.|+++++++++++++...++..+.+|..
T Consensus 89 ~~~In~grCIfCg~C~e~CPt~Al~~t~~~e~a~~~~~dl~~~~~~ll~~~~~~~~ 144 (172)
T COG1143 89 RPDINLGRCIFCGLCVEVCPTGALVLTPEFELASYKREDLVYDKERLLAPPDKKEE 144 (172)
T ss_pred cceeccccccccCchhhhCchhhhcCCcceeecccchHhhhccHHHhccCcccccc
Confidence 88999999999999999999999999999999999999999999999999998876
No 3
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=99.79 E-value=6.6e-19 Score=139.36 Aligned_cols=140 Identities=76% Similarity=1.314 Sum_probs=109.5
Q ss_pred hhHHHHHHHHHHHHHhcCCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccCCcc
Q 027264 76 FLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRR 155 (226)
Q Consensus 76 ~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~ 155 (226)
.+..++.++..+++++|++..+.+||+.....++++++...+.....+.++|++|+.|+.+||.+++.........+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~t~~yp~~~~~~~~~~~g~~~l~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~g~~~ 88 (164)
T PRK05888 9 LLKELLKGLGVTLKYFFKKKVTIQYPEEKLPLSPRFRGRHALRRDPNGEERCIACKLCAAICPADAITIEAAEREDGRRR 88 (164)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCCCCCCCCCcCCEEeecCCCCCCccCCcccChHHHcCccccccccccCCCCccc
Confidence 45577889999999999999999999988777777777654332223345999999999999999887654321111111
Q ss_pred ccccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHHHHhhcCCCchHHH
Q 027264 156 TTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKEKLLENGDRWETEI 215 (226)
Q Consensus 156 ~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 215 (226)
...+.++...|++||.|+.+||++||.+...+++.+.++.++.++...+.+.+..+..-.
T Consensus 89 ~~~~~i~~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 148 (164)
T PRK05888 89 TTRYDINFGRCIFCGFCEEACPTDAIVETPDFELATETREELIYDKEKLLANGDRVEREI 148 (164)
T ss_pred ceeeecCCCcCcccCcchhhcCcCcceecCcceeccCCHHHHccCHHHHhcccccccccc
Confidence 223457888999999999999999999999999999999999999999988866655443
No 4
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=99.78 E-value=9.2e-19 Score=140.62 Aligned_cols=124 Identities=34% Similarity=0.621 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhcCCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhc-cCCccc
Q 027264 78 TEMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEERE-DGSRRT 156 (226)
Q Consensus 78 ~~~~~~l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-~~~~~~ 156 (226)
..+..++.++++++|++..+.+||+.+...++++++... ++.++|++||.|+.+||.+++........ ...+..
T Consensus 20 ~~i~~g~~vt~~~~~~~p~T~~YP~~~~~~~~~~rG~i~-----~~~~kCi~Cg~C~~aCP~~ai~~~~~~~~~~~~~~~ 94 (183)
T TIGR00403 20 RYIGQGFAVTLDHMNRLPITIQYPYEKLIPSERFRGRIH-----FEFDKCIACEVCVRVCPINLPVVDWEFNKAIKKKQL 94 (183)
T ss_pred HHHHHHHHHHHHHhcCCCccccCCCCCCCCCccccceEE-----eCcccCcCcCChhhhCCCCccccccccccccccccc
Confidence 346779999999999999999999998888888887543 55789999999999999987644221110 011112
Q ss_pred cccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHHHHhh
Q 027264 157 TRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKEKLLE 206 (226)
Q Consensus 157 ~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~~~ 206 (226)
..+.++.+.|++||.|+.+||++||.++.+|++.+.++.++.+|...+.+
T Consensus 95 ~~~~id~~~Ci~Cg~Cv~aCP~~AI~~~~~~e~~~~~r~~l~~~~~~l~~ 144 (183)
T TIGR00403 95 KNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYDQIALGR 144 (183)
T ss_pred ceeecCcccccCcCchhhhcCCCCeecccccccccccHHHHhccHHHhcC
Confidence 24567788999999999999999999999999999999999999888754
No 5
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=99.70 E-value=6.3e-18 Score=127.36 Aligned_cols=119 Identities=59% Similarity=1.089 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccCCccccccccCC
Q 027264 84 LGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDM 163 (226)
Q Consensus 84 l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~ 163 (226)
+.+.++++|.+..+..||+.+...+.++++...+.......++|++|+.|+.+||++++.........+......+.++.
T Consensus 2 ~~~~~~~~~~~~~t~~~p~~~~~~~~~~~g~~~~~~~~~~~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01971 2 LGLTLKYFFSKPVTVQYPEEKLYLPPRFRGRIVLTRDPNGEEKCIGCTLCAAVCPADAIRVVPAEGEDGKRRLKFYQINF 81 (122)
T ss_pred cEeeHHHHcCCCceeECCCcCCCCCcccCCeEeeccCCCCcCcCcCcchhhhhcCHhHeeeeeeccCCCceecccceECc
Confidence 34578999999999999998888888888876554433455899999999999999888765322111111112345677
Q ss_pred CCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHH
Q 027264 164 TKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKE 202 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~ 202 (226)
..|.+||.|+.+||.+||.+...++..+.++.++.++.+
T Consensus 82 ~~C~~Cg~Cv~~CP~~al~~~~~~~~~~~~~~~~~~~~~ 120 (122)
T TIGR01971 82 GRCIFCGLCEEACPTDAIVLTPEFELATYTRSDLVYGKE 120 (122)
T ss_pred ccCCCCCchhhhCCCccccccceeeeccccHHHheechh
Confidence 899999999999999999999999999999999988765
No 6
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=99.66 E-value=3.5e-16 Score=124.08 Aligned_cols=134 Identities=32% Similarity=0.560 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhcCCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhh-ccCCcccc
Q 027264 79 EMVRGLGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEER-EDGSRRTT 157 (226)
Q Consensus 79 ~~~~~l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~-~~~~~~~~ 157 (226)
.+..++...+++++....+..||+.......++++... ++.++|++||.|+.+||++++....... ........
T Consensus 18 ~i~~~~~~~~~~~~~~~~t~~yp~~~~~~~~~~rg~i~-----~~~~~Ci~Cg~C~~aCP~~~~~~~~~~~~~~~~~~~~ 92 (167)
T CHL00014 18 YIGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIH-----FEFDKCIACEVCVRVCPIDLPVVDWKLETDIRKKRLL 92 (167)
T ss_pred HHHHHHHHHHHHHcCCCcceeCCCCCCCCCcCcCCeEE-----eccccCCCcCcHHHhCCCCCccccccccccccccccc
Confidence 44567888899999999999999877666667776432 4568999999999999998764422110 00011112
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHHHHh----hcCCCchHHHHH
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKEKLL----ENGDRWETEIAE 217 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~ 217 (226)
.+.+|...|++||.|+.+||++||.+...|++...++..+++++..+. ..+++|....+.
T Consensus 93 ~~~id~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~ 156 (167)
T CHL00014 93 NYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYNQIALGRLPMSVIDDYTIRTIS 156 (167)
T ss_pred cccCCCCcCcCccchHhhcCcCceecCCccccccccHHHHhcCHHHHhCCCCccccccchhhhh
Confidence 345677889999999999999999999999999999999999988873 335555544443
No 7
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=99.54 E-value=5.1e-15 Score=111.24 Aligned_cols=100 Identities=27% Similarity=0.643 Sum_probs=76.4
Q ss_pred HHHHHHHhcCCcceecCccc-cCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccCCccccccccC
Q 027264 84 LGLTLKYFFDKKVTINYPFE-KGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDID 162 (226)
Q Consensus 84 l~~~~~~~f~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d 162 (226)
+...++++|.+..+..||+. ....+..+++. +.++.++|++||.|+.+||.+++....... ...++
T Consensus 5 ~~~~~k~~~~~~~t~~~p~~~~~~~~~~~~g~-----i~i~~~~Ci~C~~C~~~CP~~ai~~~~~~~--------~~~i~ 71 (120)
T PRK08348 5 LPTVLRNLFKKPATNLFPATEPVPVPEDFRGK-----ILYDVDKCVGCRMCVTVCPAGVFVYLPEIR--------KVALW 71 (120)
T ss_pred HHHHHHHhcCCCccccCCccCCCCCCccccce-----EEECcccCcCcccHHHHCCccceEcccccc--------ceEec
Confidence 45667899999999999985 44555566553 346678999999999999999886643210 23456
Q ss_pred CCCCCcchhhhhcCcccccccCCCcccchhcHHH
Q 027264 163 MTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEE 196 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~ 196 (226)
...|+.||.|+.+||++||.+...+.+....+.+
T Consensus 72 ~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~r~~ 105 (120)
T PRK08348 72 TGRCVFCGQCVDVCPTGALQMSDDFLLASYDRFD 105 (120)
T ss_pred CCcCcChhhhHHhCCcCcEEeccceeeehhhhhh
Confidence 7889999999999999999998887766555533
No 8
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=99.47 E-value=3.2e-14 Score=114.15 Aligned_cols=96 Identities=36% Similarity=0.832 Sum_probs=74.8
Q ss_pred CCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhh
Q 027264 93 DKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 172 (226)
Q Consensus 93 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C 172 (226)
....+..||+.+...++.|+|... ++.++|++||.|+.+||+++|........ + ...+.++...|++||.|
T Consensus 11 ~g~~T~~yP~~~~~~p~~~rG~~~-----~d~~~Ci~Cg~Cv~aCP~~Ai~~~~~~~~-~---~~~~~~~~~~C~~Cg~C 81 (181)
T PRK08222 11 AGTATVKYPFAPLEVSPGFRGKPD-----LMPSQCIACGACTCACPANALTIQTDDQQ-N---SRTWQLYLGRCIYCGRC 81 (181)
T ss_pred CCCccccCCCcccCCCCCccCceE-----eChhhCcchhHHHHhCCccceEccccccc-C---ccceeeccCcCcCCCCc
Confidence 467899999988888888888643 56789999999999999999987543210 1 11245667899999999
Q ss_pred hhcCcccccccCCCcccchhcHHHh
Q 027264 173 QEACPVDAIVEGPNFEYSTETHEEL 197 (226)
Q Consensus 173 v~~CP~~Ai~~~~~~~~~~~~~~~~ 197 (226)
+.+||++||.+.+.++.....+.++
T Consensus 82 ~~~CPt~AI~~~~~~~~~~~~~~~l 106 (181)
T PRK08222 82 EEVCPTRAIQLTNNFELTVTNKADL 106 (181)
T ss_pred ccccCcCeEEeccceeeeccchhhh
Confidence 9999999999998887776555443
No 9
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=99.44 E-value=9.3e-14 Score=111.52 Aligned_cols=96 Identities=32% Similarity=0.764 Sum_probs=74.8
Q ss_pred CCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhh
Q 027264 93 DKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFC 172 (226)
Q Consensus 93 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C 172 (226)
.+..+..||+.+.....+|++.. .++.++|++||.|+.+||+++|........ + ...+.++...|++||.|
T Consensus 11 ~g~~T~~yP~~~~~~~~~~rg~p-----~~d~~~C~~C~~Cv~~CP~~ai~~~~~~~~-~---~~~~~i~~~~C~~Cg~C 81 (180)
T PRK12387 11 TGTATSSYPLEPIAVDKNFRGKP-----EYNPQQCIGCAACVNACPSNALTVETDLAT-G---ELAWEFNLGRCIFCGRC 81 (180)
T ss_pred cCCccccCCCCCCCCCCCCCCce-----EEChhhCcChhHHHHhcCccCeEeeccccC-C---cccceeccccCcCccch
Confidence 46788999988777777777754 356889999999999999999877543211 1 11345778899999999
Q ss_pred hhcCcccccccCCCcccchhcHHHh
Q 027264 173 QEACPVDAIVEGPNFEYSTETHEEL 197 (226)
Q Consensus 173 v~~CP~~Ai~~~~~~~~~~~~~~~~ 197 (226)
+.+||.+||.+...++....++.++
T Consensus 82 ~~vCP~~AI~~~~~~~~~~~~~~~l 106 (180)
T PRK12387 82 EEVCPTAAIKLSQEFELAVWKKEDL 106 (180)
T ss_pred hhhcCcCceEccCccchhhccHHHh
Confidence 9999999999988888777666655
No 10
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=99.37 E-value=9.4e-14 Score=91.16 Aligned_cols=56 Identities=38% Similarity=0.860 Sum_probs=33.0
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcc-ccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIVE 183 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~-~Ai~~ 183 (226)
++.++|++||.|+.+||.+++........ ..+.++.+.|++||.|+.+||+ +||++
T Consensus 3 Id~~~Ci~Cg~C~~~Cp~~~~~~i~~~~~------~~~~v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 3 IDEDKCIGCGKCVRACPDGAIDAIEVDEG------KKVPVNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp E-TTT----SCCCHHCCCCS-S-ECCTTT------TSSECE-TT--S-SCCCCCSSSTTSEEE
T ss_pred ECcccccChhhHHhHcCccceeeEEecCC------eeEEeccccCcCcCcccccCCCccCCCC
Confidence 56789999999999999865544322111 1234567899999999999997 99975
No 11
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=99.31 E-value=5.1e-13 Score=119.00 Aligned_cols=101 Identities=27% Similarity=0.531 Sum_probs=81.9
Q ss_pred CccccccccccchhccccccccchhhhhccCCc----------cccccccCCCCCCcchhhhhcCcccccccCCCcccch
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSR----------RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYST 191 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~----------~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~ 191 (226)
++ ++|++||.|.++||..+-. +.+.+-+.+ ....+.+|.+.|+.||.|..+||.+|+.+.++-+...
T Consensus 222 Vd-d~CtgCg~C~~vCPve~~n--efn~Gl~~~kAiy~p~~qaVp~~~~Id~~~c~~c~~C~~ac~~~av~~~q~~e~ve 298 (622)
T COG1148 222 VD-DKCTGCGACSEVCPVEVPN--EFNEGLGKRKAIYIPFPQAVPLNYNIDPKHCIECGLCEKACPNEAVDLNQEPEEVE 298 (622)
T ss_pred cc-ccccccccccccCCcccCc--ccccccccceeeeccchhhcccccccChhhhccchhhhhcCCccccccCCCCcEEE
Confidence 45 8999999999999985321 111111111 1234568889999999999999999999999988888
Q ss_pred hcHHHh-------hcCHHHHhhcCCCchHHHHHHhhhhccc
Q 027264 192 ETHEEL-------LYDKEKLLENGDRWETEIAENLRSESLY 225 (226)
Q Consensus 192 ~~~~~~-------~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (226)
.+.+.+ .||.+...++|-+.+.+|+|++++||+.
T Consensus 299 ~~vGaIIvAtGy~~~Da~~k~EyGYG~~~nVIT~lElErml 339 (622)
T COG1148 299 LEVGAIIVATGYKPFDATRKEEYGYGKYPNVITNLELERML 339 (622)
T ss_pred EEeceEEEEccccccCcchhhhcCCCCCcchhhHHHHHHHh
Confidence 888887 6799999999999999999999999985
No 12
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=99.31 E-value=3.9e-13 Score=86.94 Aligned_cols=55 Identities=33% Similarity=0.783 Sum_probs=34.3
Q ss_pred cccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 126 RCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
+|++||.|+.+||.+++.+........... .....+.+.|++||.|+.+||++||
T Consensus 1 kCi~Cg~C~~~CP~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 1 KCIGCGRCVEACPVGVIEFDEDGGKKVVDK-DNERRNAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp C--TTTHHHHHSTTT-EEEETTTTCEECSE-CCESTTGGG--TTCHHHHHSTTT-E
T ss_pred CCCCcchHHHHCCccCeEccCccccccccc-cccCCCCCccccHhHHHHHcchhhC
Confidence 699999999999999988766543221110 0111144689999999999999997
No 13
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=99.27 E-value=5.9e-13 Score=85.17 Aligned_cols=52 Identities=44% Similarity=0.997 Sum_probs=33.7
Q ss_pred cccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccc
Q 027264 126 RCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
+|++||.|+.+||+++|.+.......+. ..+.++.+.|++||.|+.+||++|
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~~~~~~~---~~~~~~~~~C~~C~~C~~~CP~~A 52 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEEENEEGK---PKMVIDPDKCTGCGACVEVCPTGA 52 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEETTT-SSS---TTSEETGGG----SHHHHHTTTS-
T ss_pred CCCCcCchHHhcCccccCcccccccCCc---eEEEEechhCcCcChhhhhCcCcC
Confidence 5999999999999999988765432222 345678899999999999999987
No 14
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=99.25 E-value=8.2e-13 Score=120.76 Aligned_cols=151 Identities=23% Similarity=0.338 Sum_probs=97.6
Q ss_pred HHHHHHHhhhhHhhhhccCCcccCcccccCCCCCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Q 027264 9 SLSALRARHLAVSGQALQGSQHYGLRFNAHPYSSYFPSKKDDEEKEQLLKEISKDWSSVFERSINMLFLTEMVRGLGLTL 88 (226)
Q Consensus 9 ~~~~l~~~~~~i~Gha~~gn~~~~~~~~~H~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~~~i~~~~~~~~~~~l~~~~ 88 (226)
...+|+++.+++|||+ .|+.++.-+.+.+..+.. ++++.+.++..+...++++.+.++...+...+
T Consensus 476 ~~vvLdN~~tAMTGgQ------------p~pg~~~~~~g~~~~~i~--iee~~r~~Gv~~v~~vdp~~~~~~~~~~keal 541 (640)
T COG4231 476 LVVVLDNRTTAMTGGQ------------PHPGTGVAAEGTKSTAIV--IEEVVRAMGVEDVETVDPYDVKELSEAIKEAL 541 (640)
T ss_pred EEEEEeccchhccCCC------------CCCCcccccCCCccceeE--hhHhhhhcCceeeeccCCcchHHHHHHHHHHh
Confidence 3457899999999999 777777666666666544 77777777777777777666665555544444
Q ss_pred HHhcCCcc-eecCccccCCCCCCccCccccccCCCccccccccccchh--ccccccccchhhhhccCCccccccccCCCC
Q 027264 89 KYFFDKKV-TINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEA--VCPAQAITIEAEEREDGSRRTTRYDIDMTK 165 (226)
Q Consensus 89 ~~~f~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~ 165 (226)
+.-- +.+ ..+.++.... ..+-++....+++.+|.++|++|+.|.. .||+- ...+.. ....+|...
T Consensus 542 e~~g-psViiak~~Cal~~-~r~k~~~~~~~~~~Vd~~~CtGC~~C~~~~~Cpsi--~~~~~~--------~k~~id~~~ 609 (640)
T COG4231 542 EVPG-PSVIIAKRECALEK-RRRKRGGMKAPKYFVDEEKCTGCGDCIVLSGCPSI--EPDPTF--------KKARIDPSS 609 (640)
T ss_pred cCCC-ceEEEEcCcchhhh-hhhccccccCCCceechhhcCCcHHHHhhcCCceE--eecCCC--------Cceeecccc
Confidence 3211 222 2223332211 1111221233446688999999999984 79963 332211 145788888
Q ss_pred CCcchhhhhcCcccccccCC
Q 027264 166 CIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 166 C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
|++||.|+++||.+|+..+.
T Consensus 610 C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 610 CNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred cccchhhhhcCchhheeccc
Confidence 99999999999999998654
No 15
>PRK13984 putative oxidoreductase; Provisional
Probab=99.19 E-value=1.7e-11 Score=115.37 Aligned_cols=112 Identities=27% Similarity=0.563 Sum_probs=84.6
Q ss_pred HHHHHHHhcCCcceecCccccCCCCCCccCccccccCCCccccccccccchhccccccccchhhhhccC--Ccccccccc
Q 027264 84 LGLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDG--SRRTTRYDI 161 (226)
Q Consensus 84 l~~~~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~--~~~~~~~~~ 161 (226)
....++.+++..++..||+.+..+.++|++.+. .+.++|++|+.|+.+||.+++.......... ........+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~Ci~C~~C~~~Cp~~ai~~~~~~~~~~~~g~~~~~~~i 83 (604)
T PRK13984 9 PLKAWKFLFRKPVTIKVPNVKREAAERYRGFHI-----NDWEKCIGCGTCSKICPTDAITMVEVPDLPQEYGKKPQRPVI 83 (604)
T ss_pred HHHHHHHhcCCCcceECCCCCCCCCccccCccc-----cChhhCcCccchhhhCCccceEeecccccccccccccccccc
Confidence 344567888999999999999999999998642 5778999999999999999886543210000 000113456
Q ss_pred CCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcC
Q 027264 162 DMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYD 200 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d 200 (226)
+...|..|+.|+.+||++||.+..++...+...+++++-
T Consensus 84 ~~~~c~~c~~c~~~Cp~~Ai~~~~~~~~~~~~~~~~~~~ 122 (604)
T PRK13984 84 DYGRCSFCALCVDICTTGSLKMTREYIHISPDPEDFIFM 122 (604)
T ss_pred CcccCcCcchHHhhCCcCcEEecceEEEeecChhhEEEe
Confidence 778899999999999999999988877777777766553
No 16
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=99.18 E-value=5.3e-12 Score=87.86 Aligned_cols=67 Identities=37% Similarity=0.645 Sum_probs=52.5
Q ss_pred CccCccccccCCCccccccccccchhccccccccchhhhhccCCccccccc-cCCCCCCcchhhhhcCcccccccCC
Q 027264 110 RFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYD-IDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 110 ~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~-~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...+.-...++.++.++|+.|+.|...||-++|....+.. .. +|.+.|-+||.|+++||++||.+..
T Consensus 20 ~kTg~Wrv~rPv~d~~kCi~C~~C~~yCPe~~i~~~~~~~---------~~~idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 20 NKTGSWRVFRPVVDEDKCINCKLCWLYCPEPAILEEEGGY---------KVRIDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred cccceeEEEeeEEcccccccCceeEEECCchheeeccCCc---------cceeEcccccCceechhhCChhheEeEe
Confidence 3344444445567889999999999999999887765431 12 7888999999999999999998754
No 17
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=99.15 E-value=1.3e-11 Score=90.46 Aligned_cols=56 Identities=32% Similarity=0.713 Sum_probs=46.0
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.++.++|++|+.|+.+||.+++..+... ...++...|++|+.|+.+||.+||.+..
T Consensus 47 ~~d~~~Ci~C~~C~~~CP~~ai~~~~~~---------~~~id~~~C~~Cg~Cv~~CP~~AI~~~~ 102 (105)
T PRK09624 47 EFNRDKCVRCYLCYIYCPEPAIYLDEEG---------YPVFDYDYCKGCGICANECPTKAIEMVR 102 (105)
T ss_pred EEChhHCcChhhHHhhCCHhhEEecCCC---------cEEECchhCCCcCchhhhcCcCcEEEec
Confidence 4678899999999999999988765321 2346778999999999999999998764
No 18
>PRK06273 ferredoxin; Provisional
Probab=99.15 E-value=2e-11 Score=96.29 Aligned_cols=83 Identities=35% Similarity=0.624 Sum_probs=55.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCc---cccccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHH-h
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSR---RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEE-L 197 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~---~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~-~ 197 (226)
++.++|++||.|+.+||+++|.+.......... ....+.++...|++||.|+.+||++||..... .++...++. .
T Consensus 46 id~~~CigCg~C~~aCP~~AI~~~~~ep~~~~~~~~~~~~~~Id~~kCi~Cg~C~~aCP~~AI~~~~~-~~~~~~~~~~~ 124 (165)
T PRK06273 46 VFEELCIGCGGCANVCPTKAIEMIPVEPVKITEGYVKTKIPKIDYEKCVYCLYCHDFCPVFALFNEIS-PIHPRDVGEDI 124 (165)
T ss_pred ECchhCcChhHHHHhcCccceeeecccccchhcccccccceecccccCcCCCCcchhCCHhheecccc-cCChhhhhhHh
Confidence 567899999999999999999875421110000 01234678889999999999999999954322 233344454 5
Q ss_pred hcCHHHHh
Q 027264 198 LYDKEKLL 205 (226)
Q Consensus 198 ~~d~~~~~ 205 (226)
+.|...+.
T Consensus 125 ~~~~~~ll 132 (165)
T PRK06273 125 EVDVSKLL 132 (165)
T ss_pred hccHHHHh
Confidence 55555543
No 19
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=99.14 E-value=1.1e-11 Score=88.52 Aligned_cols=64 Identities=27% Similarity=0.618 Sum_probs=46.0
Q ss_pred CCccccccccccchhccccccccchhhhhcc---------CCc-cccccccCCCCCCcchhhhhcCcccccccC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEERED---------GSR-RTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~---------~~~-~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
.++.++|++||.|+.+||.++|.+....... +.. ......++...|++||.|+.+||++||.+.
T Consensus 17 ~i~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~C~~Cg~C~~~CP~~AI~~~ 90 (91)
T TIGR02936 17 SIDQEKCIGCGRCYKVCGRDVLTLKGINEEGELVASDDDDDEIERKVMVVANPGNCIGCGACARVCPKKCQTHA 90 (91)
T ss_pred EECHhHCCCcchHHHHcChhhceeeccccccccccccccccccccceeeecCCccCcChhhhhhhCCHhHEecC
Confidence 3677899999999999999988765311000 000 001224678899999999999999999753
No 20
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=99.14 E-value=1.6e-11 Score=85.07 Aligned_cols=57 Identities=37% Similarity=0.688 Sum_probs=45.8
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..++.++|++|+.|+.+||.+++...... ...++...|..|+.|+.+||++||.+..
T Consensus 20 ~~i~~~~C~~C~~C~~~Cp~~ai~~~~~~---------~~~i~~~~C~~C~~C~~~CP~~Ai~~~~ 76 (78)
T TIGR02179 20 PVVDKEKCIKCKNCWLYCPEGAIQEDEGG---------FVGIDYDYCKGCGICANVCPVKAIEMVR 76 (78)
T ss_pred EEEcCCcCcChhHHHhhcCccceEecCCC---------cEEecCccCcCccchhhhCCccccEecc
Confidence 34667899999999999999988764321 2356667899999999999999998654
No 21
>PRK06991 ferredoxin; Provisional
Probab=99.09 E-value=3e-11 Score=102.33 Aligned_cols=57 Identities=33% Similarity=0.691 Sum_probs=46.1
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 187 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~ 187 (226)
++.++|++||.|+.+||+++|...... ...++...|++||.|+.+||++||.+.+..
T Consensus 82 id~~~CigCg~Cv~aCP~~AI~~~~~~---------~~~v~~~~CigCg~Cv~vCP~~AI~~~~~~ 138 (270)
T PRK06991 82 IDEQLCIGCTLCMQACPVDAIVGAPKQ---------MHTVLADLCTGCDLCVPPCPVDCIDMVPVT 138 (270)
T ss_pred EccccCCCCcHHHHhCCHhheeccccc---------ceeeCHhhCCCchHHHhhCCcCCeEeecCc
Confidence 567899999999999999998654321 124566789999999999999999877654
No 22
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=99.06 E-value=4.2e-11 Score=76.50 Aligned_cols=49 Identities=45% Similarity=1.030 Sum_probs=23.3
Q ss_pred CCccccccccccchhcccc-ccccchhhhhccCCccccccccCCCCCCcchhhhhcCc
Q 027264 121 PTGEERCIACKLCEAVCPA-QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 177 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~-~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP 177 (226)
.++.++|++||.|+++||+ .+...... ...+.++.+.|++||.|+.+||
T Consensus 3 ~id~~~C~~C~~C~~~CP~~~~~~~~~~--------~~~~~~~~~~C~~Cg~C~~~CP 52 (52)
T PF13237_consen 3 VIDEDKCIGCGRCVKVCPADNAIAIDDG--------EKKVEIDPERCIGCGACVEVCP 52 (52)
T ss_dssp ---TT------TTGGG-TT-----EEE---------SSSEEE-TTT--TTSHHHHH-T
T ss_pred ccCcccCcCCcChHHHccchhHHHhhcc--------CCCeEeCcccccccChhhhhCc
Confidence 4678999999999999998 22222111 1135668899999999999999
No 23
>CHL00065 psaC photosystem I subunit VII
Probab=99.05 E-value=7.7e-11 Score=82.33 Aligned_cols=62 Identities=21% Similarity=0.521 Sum_probs=44.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+.++|++||.|+.+||++++.+.......... ....++.+.|++|+.|+.+||++||.+..
T Consensus 6 ~~~~~Ci~Cg~C~~~CP~~~i~~~~~~~~~~~~--~~~~~~~~~C~~C~~C~~~CP~~Ai~~~~ 67 (81)
T CHL00065 6 KIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQ--IASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred CccccCCChhHHHHHCCccchhheecccccccc--ccccCCCCcCCChhhhhhhcCccccEEEE
Confidence 346799999999999999988765422100100 11234567899999999999999998543
No 24
>PLN00071 photosystem I subunit VII; Provisional
Probab=99.04 E-value=8.2e-11 Score=82.15 Aligned_cols=62 Identities=21% Similarity=0.521 Sum_probs=44.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
++.++|++||.|+.+||++++............ .....+.+.|++||.|+.+||++||.+..
T Consensus 6 ~~~~~C~~C~~C~~~CP~~~i~~~~~~~~~~~~--~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~~ 67 (81)
T PLN00071 6 KIYDTCIGCTQCVRACPTDVLEMIPWDGCKAKQ--IASAPRTEDCVGCKRCESACPTDFLSVRV 67 (81)
T ss_pred EcCCcCcChhHHHHHCCccceeeeccccccccc--ccCcCCCCcCcChhhHHhhcCCccceEee
Confidence 456899999999999999988765321100000 01124567899999999999999998643
No 25
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=99.04 E-value=7.5e-11 Score=86.48 Aligned_cols=58 Identities=33% Similarity=0.727 Sum_probs=46.8
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
..++.++|++|+.|+.+||.+++...... ...++...|.+||.|+.+||.+||.+...
T Consensus 46 p~i~~~~Ci~C~~C~~~CP~~ai~~~~~~---------~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~ 103 (105)
T PRK09623 46 PVVDESKCVKCYICWKFCPEPAIYIKEDG---------YVAIDYDYCKGCGICANECPTKAITMVKE 103 (105)
T ss_pred EEECcccCccccchhhhCCHhheEecCCC---------cEEeCchhCcCcchhhhhcCcCcEEeccc
Confidence 34678899999999999999988654221 23577789999999999999999987654
No 26
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=99.03 E-value=1e-10 Score=85.44 Aligned_cols=64 Identities=28% Similarity=0.527 Sum_probs=47.0
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
.++.++|++||.|+.+||++++.......... ......++...|++|+.|+.+||++||...+.
T Consensus 12 ~id~~~Ci~C~~Cv~aCP~~ai~~~~~~~~~~--~~~~~~i~~~~C~~C~~C~~~CP~~AI~~~~~ 75 (103)
T PRK09626 12 WVDESRCKACDICVSVCPAGVLAMRIDPHAVL--GKMIKVVHPESCIGCRECELHCPDFAIYVADR 75 (103)
T ss_pred EECcccccCCcchhhhcChhhhcccccccccc--CceeeEeCCccCCCcCcchhhCChhhEEEecc
Confidence 35678999999999999999887654321100 00123456678999999999999999987654
No 27
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=99.00 E-value=1.3e-10 Score=88.71 Aligned_cols=54 Identities=31% Similarity=0.677 Sum_probs=42.9
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccc
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
+.++.++|++|+.|+.+||.+++...... ...++...|++||.|+.+||++|+.
T Consensus 54 p~~d~~~Ci~C~~C~~~CP~~ai~~~~~~---------~~~i~~~~C~~Cg~Cv~vCP~~a~~ 107 (133)
T PRK09625 54 PVHNNEICINCFNCWVYCPDAAILSRDKK---------LKGVDYSHCKGCGVCVEVCPTNPKS 107 (133)
T ss_pred EEEehhHCcChhhHHHhCCHhheEecCCc---------eEEeCcCcCcChhHHHHHCCcCceE
Confidence 34667999999999999999987643211 2346678899999999999999964
No 28
>COG1146 Ferredoxin [Energy production and conversion]
Probab=99.00 E-value=1e-10 Score=78.93 Aligned_cols=58 Identities=34% Similarity=0.767 Sum_probs=47.1
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
++.++|++|+.|+.+||.+.+...... ....+..+.+.|++||.|+.+||++||....
T Consensus 5 Id~~~C~~c~~C~~~CP~~~~~~~~~~------~~~~~~~~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 5 IDYDKCIGCGICVEVCPAGVFDLGEDE------GGKPVVARPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred ECchhcCCCChheeccChhhEEecccc------CcceeEeccccCccchhhhhhCCcceEEEec
Confidence 567899999999999999988776432 1114567889999999999999999998654
No 29
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=99.00 E-value=1.7e-10 Score=80.37 Aligned_cols=60 Identities=22% Similarity=0.560 Sum_probs=43.5
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
.+.++|++|+.|+.+||++++.+.......... .....+...|++||.|+++||++||.+
T Consensus 5 ~~~~~Ci~C~~Cv~~CP~~~i~~~~~~~~~~~~--~~~~~~~~~C~~Cg~C~~~CP~~ai~~ 64 (80)
T TIGR03048 5 KIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQ--IASAPRTEDCVGCKRCESACPTDFLSV 64 (80)
T ss_pred ecCCcCcCcchHHHHCCccceeeeccccccccc--ccCcCCCCcCcChhHHHHhcCcccCEE
Confidence 346799999999999999988765421100000 012345678999999999999999986
No 30
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=98.99 E-value=1.3e-10 Score=88.35 Aligned_cols=62 Identities=27% Similarity=0.629 Sum_probs=49.3
Q ss_pred Cccccccccc-----cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcccc
Q 027264 122 TGEERCIACK-----LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYS 190 (226)
Q Consensus 122 ~~~~~Ci~Cg-----~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~ 190 (226)
++.++|++|| .|+.+||.+++.++... ...+.++...|++|+.|+.+||.+||.+....++.
T Consensus 5 v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~~~-------~~~~~id~~~C~~Cg~Cv~~CP~~AI~~~~~~~~~ 71 (132)
T TIGR02060 5 VYPTKCDGCKAGEKTACVYICPNDLMHLDTEI-------MKAYNIEPDMCWECYSCVKACPQGAIDVRGYADFA 71 (132)
T ss_pred EccccccCccCCchhcCHhhcCccceEecCCC-------ceeeecCchhCccHHHHHHhCCcCceEEECccccc
Confidence 5678999999 99999999998765321 01235677899999999999999999987765544
No 31
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=98.97 E-value=3e-10 Score=96.03 Aligned_cols=89 Identities=17% Similarity=0.368 Sum_probs=57.9
Q ss_pred HHHhcCCcceecCccccCCCCCCccCccccccCCC-ccccccccccchhccccccc-cchhhhhccCCccccccccCCCC
Q 027264 88 LKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPT-GEERCIACKLCEAVCPAQAI-TIEAEEREDGSRRTTRYDIDMTK 165 (226)
Q Consensus 88 ~~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~Ci~Cg~C~~~CP~~ai-~~~~~~~~~~~~~~~~~~~d~~~ 165 (226)
+..++.++.+..+-++.+.....+..... .+... +.++|++|+.|+++||++++ ...... . ....++...
T Consensus 164 ~~~~~~~r~~C~~~CP~Ga~~~~~~~~~~-~~i~~~~~~~C~~C~~C~~vCP~~~vl~~~~~~--~-----~~~~i~~~~ 235 (255)
T TIGR02163 164 FDLLFSERGWCGHLCPLGAFYGLIGRKSL-IKIAASDREKCTNCMDCFNVCPEPQVLRMPLKK--G-----GSTLVLSGD 235 (255)
T ss_pred HHHHhcCCchhhCcCCCcchhhhhhccCc-eEEEeeccccCeEcCCccCcCCCCceeeccccC--C-----CceEecccc
Confidence 34566677788876666654332221111 12223 37899999999999999863 221110 0 123456778
Q ss_pred CCcchhhhhcCcccccccC
Q 027264 166 CIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 166 C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
|+.||.|+++||++|+.++
T Consensus 236 C~~Cg~Cv~~CP~~Ai~f~ 254 (255)
T TIGR02163 236 CTLCGRCIDVCHEDVLGFT 254 (255)
T ss_pred ccchhHHHHhCCccccccc
Confidence 9999999999999999864
No 32
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=98.96 E-value=1.8e-10 Score=82.84 Aligned_cols=59 Identities=39% Similarity=0.799 Sum_probs=46.1
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+.++|++||.|+.+||+++|........ .....++...|+.|+.|+.+||++|+.+..
T Consensus 26 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~-----~~~~~~~~~~C~~C~~C~~~Cp~~a~~~~~ 84 (99)
T COG1145 26 IDAEKCIGCGLCVKVCPTGAIELIEEGLL-----LPEVVIDPDLCVLCGACLKVCPVDALSIAE 84 (99)
T ss_pred eCccccCCCCCchhhCCHHHhhcccccCc-----cceEEEccccCccccchHhhCCcCCeehhh
Confidence 55788999999999999999987322100 124567788999999999999999987544
No 33
>PRK02651 photosystem I subunit VII; Provisional
Probab=98.96 E-value=2.9e-10 Score=79.32 Aligned_cols=63 Identities=21% Similarity=0.514 Sum_probs=45.0
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 188 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~ 188 (226)
.++|++|+.|+.+||.+++.......... .......+...|.+|+.|+.+||++||.++..+.
T Consensus 8 ~~~Ci~C~~C~~~CP~~~i~~~~~~~~~~--~~~~~~~~~~~C~~Cg~C~~~CP~~ai~~~~~~~ 70 (81)
T PRK02651 8 YDTCIGCTQCVRACPLDVLEMVPWDGCKA--GQIASSPRTEDCVGCKRCETACPTDFLSIRVYLG 70 (81)
T ss_pred cccCCCcchHHHHCCccceeccccccccc--CcccccCCCCcCCChhhhhhhcCCCceEEEEEec
Confidence 58999999999999998876643211110 0011234667899999999999999998755433
No 34
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=98.96 E-value=1.7e-10 Score=93.36 Aligned_cols=56 Identities=30% Similarity=0.658 Sum_probs=45.4
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.++.++|++||.|+++||++++....+. ...++.+.|++||.|+.+||++||.+.+
T Consensus 110 ~id~~~Ci~Cg~Cv~aCp~~ai~~~~~~---------~~~v~~~~C~~Cg~Cv~vCP~~AI~~~~ 165 (191)
T PRK05113 110 FIDEDNCIGCTKCIQACPVDAIVGATKA---------MHTVISDLCTGCDLCVAPCPTDCIEMIP 165 (191)
T ss_pred EEeCCcCCCCChhhhhCCHhhhecccCC---------ceeecCCcCCchHHHHHHcCcCceEEee
Confidence 3567899999999999999988654321 1245678999999999999999998765
No 35
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=98.96 E-value=4e-10 Score=96.08 Aligned_cols=94 Identities=19% Similarity=0.370 Sum_probs=58.5
Q ss_pred HHhcCCcceecCccccCCCCCCccCccccccCC-CccccccccccchhccccccccchhhhhccCCccccccccCCCCCC
Q 027264 89 KYFFDKKVTINYPFEKGPLSPRFRGEHALRRYP-TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCI 167 (226)
Q Consensus 89 ~~~f~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~ 167 (226)
..++.++.+..|-++.+.....+. ..+..++. ++.++|++|+.|+++||++++...... +.. ....++...|+
T Consensus 172 ~~~~~~r~wC~~lCP~Ga~~~~~~-~~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~~~~~~-~~~----~~~~i~~~~C~ 245 (271)
T PRK09477 172 DLFVVEHGWCGHLCPLGAFYGLIG-KKSLIRVKAHDRQKCTRCMDCFHVCPEPQVLRPPLK-GKQ----SPSQVTSGDCI 245 (271)
T ss_pred HHHHcCCchhhccCCHHHHHHhcc-cccccccccCCcccCcccCCcCCcCCCcceeccccc-CCC----ccceeCcccCc
Confidence 345556667776555443322211 11222334 678899999999999999864321100 000 01135667899
Q ss_pred cchhhhhcCcccccccCCCcc
Q 027264 168 YCGFCQEACPVDAIVEGPNFE 188 (226)
Q Consensus 168 ~Cg~Cv~~CP~~Ai~~~~~~~ 188 (226)
.||.|+++||++||.++..+.
T Consensus 246 ~Cg~Cv~~CP~~Ai~~~~r~~ 266 (271)
T PRK09477 246 TCGRCIDVCSEDVFNFTIRFK 266 (271)
T ss_pred ChhHHHhhcCccceeeccccc
Confidence 999999999999999876543
No 36
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=98.94 E-value=2.5e-10 Score=90.42 Aligned_cols=56 Identities=34% Similarity=0.723 Sum_probs=45.3
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.++.++|++|+.|+++||++++...... ...++.+.|++||.|+.+||++||.+.+
T Consensus 109 ~id~~~Ci~Cg~C~~aCp~~ai~~~~~~---------~~~i~~~~C~~Cg~Cv~~CP~~AI~~~~ 164 (165)
T TIGR01944 109 LIDEDNCIGCTKCIQACPVDAIVGAAKA---------MHTVIADECTGCDLCVEPCPTDCIEMIP 164 (165)
T ss_pred EEECCcCCChhHHHHhCCccceEecCCC---------ceEeecccccChhHHHHhcCcCceEeeC
Confidence 3567899999999999999988654321 2345668899999999999999998654
No 37
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=98.91 E-value=4.1e-10 Score=96.97 Aligned_cols=62 Identities=34% Similarity=0.652 Sum_probs=47.3
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
+.++.++|++||.|+.+||.+++.+...... .....++...|.+||.|+.+||++||.+...
T Consensus 43 ~~~~~~~C~~C~~C~~~Cp~~a~~~~~~~~~-----~~~~~~~~~~C~~Cg~C~~~CP~~Ai~~~g~ 104 (295)
T TIGR02494 43 LLFKENRCLGCGKCVEVCPAGTARLSELADG-----RNRIIIRREKCTHCGKCTEACPSGALSIVGE 104 (295)
T ss_pred EEEccccCCCCchhhhhCcccccccccccCC-----CcceeechhhcCchhHhhccCcHhHHhhhcc
Confidence 3467889999999999999999863221100 1134677789999999999999999987543
No 38
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=98.90 E-value=4.3e-10 Score=94.09 Aligned_cols=57 Identities=33% Similarity=0.648 Sum_probs=47.9
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+.++.++|+.||.|.++|+.+||...+.. .+.+++..|.+||.|..+||.+||.+++
T Consensus 64 p~i~~e~C~~CG~C~~vC~f~Ai~~~~~~---------~~~~~~~lC~GCgaC~~~CP~~AI~~~~ 120 (284)
T COG1149 64 PEIDPEKCIRCGKCAEVCRFGAIVVLPGG---------KPVLNPDLCEGCGACSIVCPEPAIEEEP 120 (284)
T ss_pred cccChhhccccCcHHHhCCCCeEEEcCCC---------ceecCcccccCcccceeeCCCccccccc
Confidence 44677889999999999999999764332 4677889999999999999999998654
No 39
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=98.88 E-value=5e-11 Score=112.83 Aligned_cols=98 Identities=23% Similarity=0.443 Sum_probs=60.1
Q ss_pred ccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHH
Q 027264 123 GEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKE 202 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~ 202 (226)
....|+.||.|+.+||.+.+...................+...|+.||.|..+||.+ |.+...+..........-.+..
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP~~l~~~~~~~d~~~~~~~~~~~CieCG~C~~vCPs~-Iplv~~~r~aK~~i~~~~~~~~ 446 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLPQQLYWFAKAEEHDKAQEYNLFDCIECGACAYVCPSN-IPLVQYYRQAKAEIRAIEQEKK 446 (695)
T ss_pred chhhcCCcccHHHHCCccchhhhHHHhhhccccchhhhcChhhccccCcccccCCCC-CcHHHHHHHHHHHHHHhhhhhh
Confidence 457899999999999999876432211111111111234567899999999999999 6655544444433333333344
Q ss_pred HHhhcCCCchHHHHHHhhh
Q 027264 203 KLLENGDRWETEIAENLRS 221 (226)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~ 221 (226)
+......+++++.+++.+.
T Consensus 447 ~a~~ar~r~e~r~~R~~r~ 465 (695)
T PRK05035 447 KAEEAKARFEARQARLERE 465 (695)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 4445566666666666543
No 40
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=98.87 E-value=5.4e-10 Score=93.32 Aligned_cols=63 Identities=35% Similarity=0.785 Sum_probs=50.8
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcccchhc
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTET 193 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~ 193 (226)
.++.++|++|+.|+++||.+++..... ...++...|..||.|+.+||.+||...++++.....
T Consensus 144 ~id~~~C~~C~~C~~~CP~~ai~~~~~----------~~~i~~~~C~~Cg~C~~~CP~~AI~~~~~~~~~~~~ 206 (234)
T TIGR02700 144 MIDRKRCKGCGICVDACPRSAIDMVDG----------KAFIRLLKCVGCGKCKEACPYNAIHGGLEYEMRVRS 206 (234)
T ss_pred EEChhHCcCcchHHHhCCcccEEecCC----------ceEEchhhCCccchHHhhCCCCceecCCceEEeeee
Confidence 356789999999999999998876432 235677899999999999999999988776655433
No 41
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=98.85 E-value=1.1e-09 Score=95.16 Aligned_cols=67 Identities=33% Similarity=0.637 Sum_probs=46.2
Q ss_pred CCCccccccccccchhccccccccchhhhh--ccCCc-cccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEER--EDGSR-RTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~--~~~~~-~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
..++.++|+.|+.|..+||..++....... ..+.. .......+...|.+|+.|+.+||++||.+..+
T Consensus 242 p~id~~~Ci~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~d~~~C~gCg~C~~~CP~~AI~~~~e 311 (312)
T PRK14028 242 PVIDHSKCIMCRKCWLYCPDDAIIEAWREAEGPRGRKFRMKMIDFDYQYCKGCGVCAEVCPTGAIQMVRE 311 (312)
T ss_pred eEECcccCcCcccccccCChhhhhcccccccCcccccccceeecCCcccCcCcCchhhhCCHhheEeccc
Confidence 345788999999999999998875321110 00000 11123456678999999999999999987653
No 42
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=98.85 E-value=1.2e-09 Score=79.45 Aligned_cols=57 Identities=25% Similarity=0.638 Sum_probs=44.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...++|++|+.|+.+||.+++....... ..+.++...|++||.|+.+||++||....
T Consensus 31 ~~~~~C~~C~~C~~~CP~~~i~~~~~g~-------~~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~ 87 (101)
T TIGR00402 31 LFSAVCTRCGECASACENNILQLGQQGQ-------PTVEFDNAECDFCGKCAEACPTNAFHPRF 87 (101)
T ss_pred cCcCcCcChhHHHHHcCcccceeccCCc-------eeeEecCccCcCccChhhHCCccccCcCC
Confidence 3457999999999999999887653210 12456778999999999999999997543
No 43
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=98.84 E-value=1.4e-09 Score=101.28 Aligned_cols=66 Identities=30% Similarity=0.703 Sum_probs=45.0
Q ss_pred ccCCCccccccccccchhcccc----ccccchhhhhccCCccc--cccccCCCCCCcchhhhhcCcccccccCC
Q 027264 118 RRYPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRRT--TRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 118 ~~~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~~--~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
|.+..+.++||.||.|+++|-. .+|.++.+. ...+.. ....++...|..||.|+++||++|+..++
T Consensus 142 Pfy~ydp~qCIlCgRCVeaCqevqv~eaL~i~w~~--~~pRV~wd~~~~i~~SSCVsCG~CvtVCP~nALmek~ 213 (978)
T COG3383 142 PFYIYDPNQCILCGRCVEACQEVQVNEALTIDWRG--EDPRVIWDNDVPINESSCVSCGACVTVCPVNALMEKS 213 (978)
T ss_pred CeEEecchheeehhHHHHHHHhhhceeEEEeeccc--CCcceecCCCCccccccccccCccceecchhhhhhhh
Confidence 4455788999999999999983 344443321 111111 11234567899999999999999997554
No 44
>PRK08764 ferredoxin; Provisional
Probab=98.82 E-value=1.2e-09 Score=83.68 Aligned_cols=52 Identities=37% Similarity=0.709 Sum_probs=41.6
Q ss_pred ccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccccc
Q 027264 123 GEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
..++|++|+.|+++||+++|...... ...++.+.|++||.|+.+||++||.+
T Consensus 83 ~~~~Ci~C~~Cv~aCp~~ai~~~~~~---------~~~v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 83 VEADCIGCTKCIQACPVDAIVGGAKH---------MHTVIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred CcccCcCcchHHHhCChhhcCccCCC---------ceeecCCcCcCccchhhhcCccceEe
Confidence 35799999999999999988653211 12356678999999999999999975
No 45
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=98.80 E-value=1.7e-09 Score=90.26 Aligned_cols=79 Identities=33% Similarity=0.567 Sum_probs=50.3
Q ss_pred CCCccccccccccchhcccc--ccccchhhhhccCCcccc---ccccCCCCCCcchhhhhcCcccccccCCCcccchhcH
Q 027264 120 YPTGEERCIACKLCEAVCPA--QAITIEAEEREDGSRRTT---RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETH 194 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~--~ai~~~~~~~~~~~~~~~---~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~ 194 (226)
+.++.++|+.||.|+.+||. +...+....+........ ....+...|++||.|+.+||++||..+.. ..
T Consensus 141 i~~d~~kCi~Cg~Cv~aC~~i~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~C~~Cg~Cv~vCP~gAL~~~~~------~~ 214 (234)
T PRK07569 141 FGIDHNRCVLCTRCVRVCDEIEGAHTWDVAGRGAKSRVITDLNQPWGTSETCTSCGKCVQACPTGAIFRKGS------TV 214 (234)
T ss_pred EEeehhhCcCccHHHHHHHHhcCCceeeecccCCcceEeecCCccccccccccchHHHHHhCCCCcEEecCC------cH
Confidence 44678999999999999994 333332221111111100 01123458999999999999999987754 46
Q ss_pred HHhhcCHHHH
Q 027264 195 EELLYDKEKL 204 (226)
Q Consensus 195 ~~~~~d~~~~ 204 (226)
+++.+|...+
T Consensus 215 ~~~~~~~~~~ 224 (234)
T PRK07569 215 GEMEKDRDKL 224 (234)
T ss_pred HHhhcCcccc
Confidence 6666665533
No 46
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=98.77 E-value=1.2e-09 Score=92.22 Aligned_cols=58 Identities=41% Similarity=0.801 Sum_probs=49.0
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCccc
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEY 189 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~ 189 (226)
.....+|+.||.|++.||++|+.... ...|+.+.|++|+.|..+||++|+...+.+..
T Consensus 189 ~v~e~kc~~c~~cv~~cp~~Ai~~~~-----------~~~I~~~~ci~c~~c~~ac~~gav~~~W~~~~ 246 (354)
T COG2768 189 VVVEEKCYDCGLCVKICPVGAITLTK-----------VVKIDYEKCIGCGQCMEACPYGAVDQNWEEDS 246 (354)
T ss_pred eeeeecccccchhhhhCCCcceeccc-----------ceeechhhccchhhhhhhccCcccccchhhcc
Confidence 35678999999999999999998763 34788899999999999999999987665443
No 47
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.74 E-value=2.1e-09 Score=77.64 Aligned_cols=55 Identities=42% Similarity=0.846 Sum_probs=36.3
Q ss_pred cccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 124 EERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 124 ~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
...|..|. .|+++||++||..++..+ .+.+|.+.|++|+.|+.+||++||.+.+.
T Consensus 6 ~~~C~hC~~ppC~~~CP~~Ai~~~~~~G--------~V~id~~~CigC~~C~~aCP~~ai~~~~~ 62 (98)
T PF13247_consen 6 PVQCRHCEDPPCVEACPTGAIYKDPEDG--------IVVIDEDKCIGCGYCVEACPYGAIRFDPD 62 (98)
T ss_dssp EEC---BSS-HHHHHCTTTSEEEETTTS---------EEE-TTTCCTHHHHHHH-TTS-EEEETT
T ss_pred CCcCcCcCCCchhhhCCccceEEEcCCC--------eEEechhhccCchhhhhhhccCcceeecc
Confidence 45688886 888889988887765221 45678888888988999999888876654
No 48
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.72 E-value=2.4e-09 Score=88.88 Aligned_cols=55 Identities=29% Similarity=0.712 Sum_probs=35.8
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch----------hhhhcCcccccccCCCcc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG----------FCQEACPVDAIVEGPNFE 188 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg----------~Cv~~CP~~Ai~~~~~~~ 188 (226)
++.++|++|+.|+.+||.+++..... ..+...|++|+ .|+.+||++||.+.+.-+
T Consensus 122 id~~~C~~C~~C~~aCP~~A~~~~~~------------~~~~~kC~~C~~~~~~~g~~P~Cv~~Cp~~Ai~f~~~~~ 186 (225)
T TIGR03149 122 VHKDLCVGCQYCIAACPYRVRFIHPV------------TKSADKCNFCRDTNLAEGKLPACVESCPTKALTFGDLND 186 (225)
T ss_pred echhhCCcchHHHHhCCCCCcEecCC------------CCccccCCCCCcchhhCCCCCcccccCccCCEEEecccc
Confidence 44566777777777777666543221 12346788887 788888888888766433
No 49
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=98.72 E-value=3.4e-09 Score=94.30 Aligned_cols=64 Identities=30% Similarity=0.566 Sum_probs=44.7
Q ss_pred Cccccccccccchhccccccccch--hhhhccCCc--cccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIE--AEEREDGSR--RTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~--~~~~~~~~~--~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
++.++|++||.|+++||.+++... ...+..... ......++...|+.||.|+.+||++||....
T Consensus 4 id~~kCi~Cg~Cv~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~id~~~C~~Cg~Cv~~CP~~Ai~~~~ 71 (374)
T TIGR02512 4 RDMSKCIGCGRCVRACTNVQIVGALGFLNRGGKTEVAPKFGRLLDESNCIGCGQCSLVCPVGAITEKD 71 (374)
T ss_pred echhhCCcChHhhhhCCHhhccccccccccCCccccccccccccCcccCcCccCHHHhCCCChhhhhc
Confidence 567899999999999999988632 111110000 0012346778999999999999999997653
No 50
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=98.72 E-value=4.8e-09 Score=91.31 Aligned_cols=56 Identities=34% Similarity=0.723 Sum_probs=44.4
Q ss_pred CCccccccccccchhccccc---cccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 121 PTGEERCIACKLCEAVCPAQ---AITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~---ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
.++.++|+.||.|+++||.. ++..... ...++...|++||.|+.+||++|+..+..
T Consensus 165 ~~d~~~C~~Cg~C~~~Cp~~a~~ai~~~~~----------~~~id~~~C~~Cg~Cv~~CP~~Al~~~~~ 223 (314)
T TIGR02912 165 QYDADRCIGCGACVKVCKKKAVGALSFENY----------KVVRDHSKCIGCGECVLKCPTGAWTRSEE 223 (314)
T ss_pred ceeCccCCcchHHHHhcChhhcCceeccCC----------eEEeCCCcCcCcchhhhhCCHhhcccCcC
Confidence 46788999999999999974 4443221 34678889999999999999999976653
No 51
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.71 E-value=5.1e-09 Score=82.71 Aligned_cols=53 Identities=26% Similarity=0.614 Sum_probs=40.1
Q ss_pred cccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 128 IACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 128 i~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+.|+.|+.+||+++|.+.....+ .....++.+.|++||.|+.+||++||.+++
T Consensus 107 ~~C~~C~~~CP~~Ai~~~~~~~~-----~~~~~i~~~~C~gCg~C~~~CP~~AI~~~~ 159 (163)
T PRK10194 107 VECRRCQDSCEPMAIIFRPTLSG-----IYQPQLNSQLCNGCGACAASCPVSAITAEY 159 (163)
T ss_pred CCcCcchhhCCHhHeEeeecCCC-----cccceeCcccCcCcchhhhhCCccceEecc
Confidence 68999999999988877532110 012356778999999999999999998765
No 52
>PRK09898 hypothetical protein; Provisional
Probab=98.70 E-value=5e-09 Score=86.00 Aligned_cols=21 Identities=48% Similarity=0.975 Sum_probs=10.9
Q ss_pred cccccccc--cchhccccccccc
Q 027264 124 EERCIACK--LCEAVCPAQAITI 144 (226)
Q Consensus 124 ~~~Ci~Cg--~C~~~CP~~ai~~ 144 (226)
...|+.|+ .|+.+||+++|..
T Consensus 120 ~~~C~~C~~~~C~~~CP~gAi~~ 142 (208)
T PRK09898 120 ADTCRQCKEPQCMNVCPIGAITW 142 (208)
T ss_pred CccCCCccCcchhhhCCcceEEe
Confidence 34455554 5555555555443
No 53
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.70 E-value=6.1e-09 Score=84.27 Aligned_cols=59 Identities=32% Similarity=0.741 Sum_probs=42.8
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcc------h---hhhhcCcccccccCCCcccch
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC------G---FCQEACPVDAIVEGPNFEYST 191 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~C------g---~Cv~~CP~~Ai~~~~~~~~~~ 191 (226)
.++.++||+|+.|+.+||.+|..+....+ ..++|++| | .|+.+||++|+.+++.-+..+
T Consensus 96 ~vd~d~CIGC~yCi~ACPyga~~~~~~~~------------~~~KCt~C~~ri~~g~~PaCV~~CP~~A~~fG~~~d~~~ 163 (203)
T COG0437 96 LVDKDLCIGCGYCIAACPYGAPQFNPDKG------------VVDKCTFCVDRVAVGKLPACVEACPTGALIFGDIDDPKS 163 (203)
T ss_pred EecCCcccCchHHHhhCCCCCceeCcccC------------cccccCcchhhHhcCCCCcccccCCcccccccchhhcch
Confidence 35678888888888888888877665221 13678888 7 788888888888777655544
No 54
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=98.69 E-value=5.4e-09 Score=94.13 Aligned_cols=54 Identities=35% Similarity=0.718 Sum_probs=44.8
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccccc
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
..++.++|++|+.|+.+||.+++..... .+.++...|.+|+.|+.+||.+||..
T Consensus 5 ~~id~~~Ci~C~~C~~~CP~~ai~~~~~----------~~~i~~~~C~~C~~C~~~CP~~AI~~ 58 (411)
T TIGR03224 5 HLIDPEICIRCNTCEETCPIDAITHDDR----------NYVVKADVCNGCMACVSPCPTGAIDN 58 (411)
T ss_pred eeeCcccCcCccchhhhCCcccEeccCC----------ceEeCcccCcCHHHHHhhcCccccee
Confidence 3467889999999999999998876432 23567789999999999999999973
No 55
>PRK10194 ferredoxin-type protein; Provisional
Probab=98.69 E-value=5e-09 Score=82.77 Aligned_cols=54 Identities=20% Similarity=0.550 Sum_probs=40.8
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
.++|++||.|+++||.++|....... ..+.++.+.|++|+.|+.+||++||...
T Consensus 33 ~~~C~~Cg~C~~aCp~~~i~~~~~~~-------~~~~~~~~~C~~C~~C~~~CP~~ai~~~ 86 (163)
T PRK10194 33 LTHCTRCDACINACENNILQRGAGGY-------PSVNFKNNECSFCYACAQACPESLFSPR 86 (163)
T ss_pred hhhCcChhHHHHHcChhhcccCCCCc-------eeeeecCCCCCCchhhHhhCcchheecc
Confidence 56899999999999999886543210 1234566789999999999999998654
No 56
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=98.68 E-value=3.6e-09 Score=71.01 Aligned_cols=54 Identities=39% Similarity=0.868 Sum_probs=36.1
Q ss_pred cccccccchhccccccccchhh-hhccCC------ccccccccCCCCC------CcchhhhhcCccc
Q 027264 126 RCIACKLCEAVCPAQAITIEAE-EREDGS------RRTTRYDIDMTKC------IYCGFCQEACPVD 179 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~~-~~~~~~------~~~~~~~~d~~~C------~~Cg~Cv~~CP~~ 179 (226)
.|+.|++|+++||++||..... ...... .....+..+...| .+||.|+.+||.+
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~C~~C~~vCP~N 67 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGEDEPTWEPKGCWSYNNPGVKKWRIDWEKCVSYWDCYGCGICQKVCPFN 67 (67)
T ss_pred CCcchhHHHHhCcHhhccCCCcCeeecCcchhccCccccCccchHHhhhcCCCccccchhhccCCCC
Confidence 4999999999999999988721 111100 1112334444445 4999999999975
No 57
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.68 E-value=6e-09 Score=87.44 Aligned_cols=60 Identities=28% Similarity=0.608 Sum_probs=46.1
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch---------hhhhcCcccccccCCCcccch
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPNFEYST 191 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg---------~Cv~~CP~~Ai~~~~~~~~~~ 191 (226)
.++.++|++|+.|+.+||.+++.+... ..+.+.|++|+ .|+.+||++||.+.+.-+..+
T Consensus 126 ~id~~~CigC~~Cv~aCP~~Ai~~~~~------------~~~~~KC~~C~~r~~~G~~PaCv~~CP~~Al~~g~~~~~~s 193 (244)
T PRK14993 126 VVDNKRCVGCAYCVQACPYDARFINHE------------TQTADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPHS 193 (244)
T ss_pred EEcHHHCCCHHHHHHhcCCCCCEEeCC------------CCCcccCcCCcchhhCCCCcccchhcccCCEEEcccccchH
Confidence 356788999999999999998876542 23457899998 899999999998876554443
Q ss_pred h
Q 027264 192 E 192 (226)
Q Consensus 192 ~ 192 (226)
+
T Consensus 194 ~ 194 (244)
T PRK14993 194 R 194 (244)
T ss_pred H
Confidence 3
No 58
>PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B ....
Probab=98.68 E-value=1.8e-09 Score=77.99 Aligned_cols=53 Identities=36% Similarity=0.824 Sum_probs=36.2
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcc---------hhhhhcCcccccccCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC---------GFCQEACPVDAIVEGP 185 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~C---------g~Cv~~CP~~Ai~~~~ 185 (226)
.++.++|++|+.|+.+||.+++.+..... ...+|..| ..|+++||++||.+++
T Consensus 36 ~id~~~CigC~~C~~aCP~~ai~~~~~~~------------~~~KCdlC~~r~~~G~~PaCv~~Cp~~Al~~g~ 97 (98)
T PF13247_consen 36 VIDEDKCIGCGYCVEACPYGAIRFDPDTG------------KARKCDLCIDRIEEGEEPACVEACPTGALTFGD 97 (98)
T ss_dssp EE-TTTCCTHHHHHHH-TTS-EEEETTTT------------CEEE--TTHHHHTTT-S-HHHHH-TTS-EEEEE
T ss_pred EechhhccCchhhhhhhccCcceeecccc------------cCCcCceehhhhhcCCCChhHHhccccceEEec
Confidence 46789999999999999999998865421 22468888 6899999999998753
No 59
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=98.67 E-value=4.9e-09 Score=89.02 Aligned_cols=70 Identities=26% Similarity=0.608 Sum_probs=53.4
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccccc---CCCcccchhcHHH
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE---GPNFEYSTETHEE 196 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~---~~~~~~~~~~~~~ 196 (226)
+.+ .++|++|+.|+.+||.+++.+++.. ....+...|+.|+.|+.+||.+||.+ ++.|.+..++.+.
T Consensus 165 I~i-~~~C~~C~~C~~~CP~~vi~~~~~~---------~~v~~~~~C~~C~~Ci~~CP~~AI~i~~~~~~~if~vEs~G~ 234 (263)
T PRK00783 165 IEV-SEDCDECEKCVEACPRGVLELKEGK---------LVVTDLLNCSLCKLCERACPGKAIRVSDDENKFIFTVESDGS 234 (263)
T ss_pred ccc-cccCCchHHHHHhCCccccEecCCe---------EEEeChhhCCCchHHHHhCCCCceEEEEcCCeEEEEeccCCC
Confidence 434 6899999999999999998875421 12336678999999999999999964 4556677777777
Q ss_pred hhc
Q 027264 197 LLY 199 (226)
Q Consensus 197 ~~~ 199 (226)
+..
T Consensus 235 l~p 237 (263)
T PRK00783 235 LPV 237 (263)
T ss_pred CCH
Confidence 644
No 60
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=98.66 E-value=8.8e-09 Score=102.90 Aligned_cols=67 Identities=31% Similarity=0.626 Sum_probs=47.4
Q ss_pred CCCccccccccccchhccccccccchhhh-----h---c------cC---CccccccccCCCCCCcchhhhhcCccc--c
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEE-----R---E------DG---SRRTTRYDIDMTKCIYCGFCQEACPVD--A 180 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~-----~---~------~~---~~~~~~~~~d~~~C~~Cg~Cv~~CP~~--A 180 (226)
+.++.++|+.||.|+.+||+++|...... . . .+ ........++.+.|++||.|+.+||.+ |
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~i~i~~~~C~gCg~Cv~~CP~~~~A 757 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRPKLADEEELENAPAGFKSLDAKGKELEGMKFRIQISPLDCTGCGNCVDICPAKEKA 757 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccccccchhhhhcCcccchhhhhhcccccccceeEEeccccCcCccchhhhcCCCCcc
Confidence 44678899999999999999998753110 0 0 00 001112457788999999999999995 8
Q ss_pred cccCCC
Q 027264 181 IVEGPN 186 (226)
Q Consensus 181 i~~~~~ 186 (226)
|.+++.
T Consensus 758 l~m~~~ 763 (1165)
T TIGR02176 758 LVMQPL 763 (1165)
T ss_pred ccccch
Confidence 987764
No 61
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.65 E-value=8.4e-09 Score=92.02 Aligned_cols=55 Identities=31% Similarity=0.478 Sum_probs=41.0
Q ss_pred ccccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 123 GEERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
....|++|+ .|+.+||++||......+ .+.++.+.|++|+.|+.+||++||.+..
T Consensus 179 ~p~~C~HC~nP~CV~ACPtGAI~k~eedG--------iV~ID~dkCiGCg~CV~ACPygAI~~n~ 235 (492)
T TIGR01660 179 LPRLCEHCLNPACVASCPSGAIYKREEDG--------IVLIDQDKCRGWRMCISGCPYKKIYFNW 235 (492)
T ss_pred CCCcCcCCCcccchhhCccCCeEEecCCC--------eEEEehhhccChHHHHHhCCCCCcEecC
Confidence 456899998 899999998886432211 2356778899999999999999887654
No 62
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.64 E-value=7.8e-09 Score=81.00 Aligned_cols=51 Identities=39% Similarity=0.774 Sum_probs=40.1
Q ss_pred ccccc--ccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 126 RCIAC--KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 126 ~Ci~C--g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
.|..| .-|+++||++||..+++ ...++.+.|++||.|+.+||+|||.+...
T Consensus 52 ~C~qCedaPC~~vCP~~AI~~~~~----------~v~V~~ekCiGC~~C~~aCPfGai~~~~~ 104 (165)
T COG1142 52 VCHHCEDAPCAEVCPVGAITRDDG----------AVQVDEEKCIGCKLCVVACPFGAITMVSY 104 (165)
T ss_pred cCCCCCCcchhhhCchhheeecCC----------ceEEchhhccCcchhhhcCCcceEEEEee
Confidence 35555 68999999999987743 35677889999999999999999986553
No 63
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=98.61 E-value=7.5e-10 Score=99.70 Aligned_cols=96 Identities=24% Similarity=0.450 Sum_probs=60.9
Q ss_pred cccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcccchhcHHHhhcCHHHHh
Q 027264 126 RCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHEELLYDKEKLL 205 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~~ 205 (226)
.|+.|+.|+.+||++.+...-..................+|+.||.|..+||.+ |.+...|+.....-...-.......
T Consensus 366 sCi~C~~C~d~CP~~Llp~ql~~~a~~~~~~e~~~~~l~dCIECg~Ca~vCPs~-iplvq~~r~~Ka~i~~~~~~~~~~~ 444 (529)
T COG4656 366 SCIRCSLCADACPVNLLPQQLYWFAKGEQHDEEEEHNLLDCIECGACAYVCPSN-IPLVQYFRQEKAEILAQRQELKKAE 444 (529)
T ss_pred ccccHHHHHHhCccccCHHHhhHHhhhhhhhHHHHHHhhhhhhhCcchhcCCCC-CCHHHHHHHHHHHHHHhchhhhccc
Confidence 799999999999998766544332222222223344567899999999999998 5555555554444444434444444
Q ss_pred hcCCCchHHHHHHhhhh
Q 027264 206 ENGDRWETEIAENLRSE 222 (226)
Q Consensus 206 ~~~~~~~~~~~~~~~~~ 222 (226)
....++.+..+++...+
T Consensus 445 ~~~~rf~~~~~rl~~~~ 461 (529)
T COG4656 445 EAKTRFEARTARLEREK 461 (529)
T ss_pred cccchhhhhhhhhhhhh
Confidence 55666666655555443
No 64
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=98.61 E-value=1.3e-08 Score=98.15 Aligned_cols=66 Identities=23% Similarity=0.524 Sum_probs=43.9
Q ss_pred ccCCCccccccccccchhcccc----ccccchhhhhccCCcc----------------------ccccccCCCCCCcchh
Q 027264 118 RRYPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRR----------------------TTRYDIDMTKCIYCGF 171 (226)
Q Consensus 118 ~~~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~----------------------~~~~~~d~~~C~~Cg~ 171 (226)
+.+..+.++||.|++|+++|+. .+|.+..+ +..... .....-+...|+.||.
T Consensus 134 ~~I~~D~~rCI~C~RCVr~C~ev~g~~al~~~~R--G~~~~~~~~~~~~~~da~~~~~~~~~~~i~~~~~~~~~C~~CG~ 211 (819)
T PRK08493 134 GKINYDPSLCIVCERCVTVCKDKIGESALKTVPR--GLDAPDKSFKESMPKDAYAVWSKKQKSLIGPVGGETLDCSFCGE 211 (819)
T ss_pred CcEEechhhcccccHHHhhCcccccchhhhhccC--CcccccccccccccccchhhhhhcccceecccCCCcccccccCc
Confidence 3456788999999999999995 34443322 211100 0000112468999999
Q ss_pred hhhcCcccccccCC
Q 027264 172 CQEACPVDAIVEGP 185 (226)
Q Consensus 172 Cv~~CP~~Ai~~~~ 185 (226)
|+.+||+|||..++
T Consensus 212 Cv~VCPvGAL~~k~ 225 (819)
T PRK08493 212 CIAVCPVGALSSSD 225 (819)
T ss_pred HHHhCCCCccccCc
Confidence 99999999998764
No 65
>PRK07118 ferredoxin; Validated
Probab=98.61 E-value=1.4e-08 Score=86.80 Aligned_cols=52 Identities=46% Similarity=0.813 Sum_probs=45.0
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...|+.|+.|+++||.++|.++.. ...+|.+.|++||.|+.+||++||.+..
T Consensus 212 ~~~Ci~Cg~Cv~~CP~~AI~~~~~----------~~vId~~~C~~Cg~C~~~CP~~AI~~~~ 263 (280)
T PRK07118 212 EVGCIGCGKCVKACPAGAITMENN----------LAVIDQEKCTSCGKCVEKCPTKAIRILN 263 (280)
T ss_pred ccccccchHHHhhCCcCcEEEeCC----------cEEEcCCcCCCHHHHHHhCCccccEeec
Confidence 467999999999999999988543 3467889999999999999999998654
No 66
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.61 E-value=1.2e-08 Score=87.60 Aligned_cols=53 Identities=26% Similarity=0.610 Sum_probs=40.1
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcc---------hhhhhcCcccccccCCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC---------GFCQEACPVDAIVEGPN 186 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~C---------g~Cv~~CP~~Ai~~~~~ 186 (226)
++.++|++|+.|+.+||.+++.+... ....++|++| ..|+.+||.+|+.++..
T Consensus 159 ID~ekCiGCg~Cv~ACPygAi~~n~~------------~~~~eKC~~C~~Rie~G~~PaCv~aCP~~A~~fGdl 220 (321)
T TIGR03478 159 VDQERCKGYRYCVEACPYKKVYFNPQ------------SQKSEKCIGCYPRIEKGIAPACVKQCPGRIRFVGYL 220 (321)
T ss_pred ECHHHCcchHHHHHhCCCCCcEecCC------------CCchhhCCCchhhhccCCCCHHHhhcCcccEEEEeC
Confidence 56678888888888888888776432 2345689999 78999999999887654
No 67
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=98.60 E-value=2.2e-09 Score=69.67 Aligned_cols=55 Identities=31% Similarity=0.681 Sum_probs=23.9
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
.++|++||.|..+||+............... ........+.|+.||.|+.+||++
T Consensus 2 ~~~Ci~Cg~C~~~CP~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 2 LSKCIRCGACTSVCPVYRNTGRFSHPPRDRR-SAVLREEAWSCTTCGACSEVCPVG 56 (57)
T ss_dssp HHC--S-SHHHHCSHHHHHHHHHHTSTTS---HHHHHHHHGG-----HHHHH-TT-
T ss_pred HHHccCccChHHHChhhhcccccccCcchhH-HHhhcccccCCcCcCCccCcCccc
Confidence 4689999999999996432221111111110 001111127899999999999997
No 68
>TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit. This model represents the iron-sulfur subunit, typically called the beta subunit, of various proteins that also contain a molybdopterin subunit and a heme b subunit. The group includes two distinct but very closely related periplasmic proteins of anaerobic respiration, selenate reductase and chlorate reductase. Other members of this family include dimethyl sulphide dehydrogenase and ethylbenzene dehydrogenase.
Probab=98.60 E-value=1.1e-08 Score=87.74 Aligned_cols=56 Identities=30% Similarity=0.587 Sum_probs=45.3
Q ss_pred Cccccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
....+|..|+ .|+.+||++||......+ .+.+|.+.|++|+.|+.+||.+|+.+..
T Consensus 126 y~p~~C~hC~nP~Cv~aCPtgAI~k~eedG--------iV~ID~ekCiGCg~Cv~ACPygAi~~n~ 183 (321)
T TIGR03478 126 YLPRICNHCTNPACLAACPTGAIYKREEDG--------IVLVDQERCKGYRYCVEACPYKKVYFNP 183 (321)
T ss_pred EecccCCCCCCccchhhCCcCcEEEecCCC--------eEEECHHHCcchHHHHHhCCCCCcEecC
Confidence 4467999999 899999999996533211 3457888999999999999999998654
No 69
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.59 E-value=1.3e-08 Score=91.23 Aligned_cols=51 Identities=33% Similarity=0.896 Sum_probs=44.8
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
++.+.|++||.|++ ||.+||+.+ . ...|+-.|.+||.|..+||.+|+.+..
T Consensus 558 vde~~C~gC~~C~~-Cpf~ais~~-k-----------a~v~~~~C~gCG~C~~aCp~gai~~~~ 608 (622)
T COG1148 558 VDEDKCTGCGICAE-CPFGAISVD-K-----------AEVNPLRCKGCGICSAACPSGAIDLAG 608 (622)
T ss_pred cchhhhcCCcceee-CCCCceecc-c-----------cccChhhhCcccchhhhCCcccchhcc
Confidence 67889999999999 999999876 2 356778899999999999999998754
No 70
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.57 E-value=1.4e-08 Score=88.44 Aligned_cols=55 Identities=25% Similarity=0.654 Sum_probs=36.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchh-------------hhhcCcccccccCCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGF-------------CQEACPVDAIVEGPN 186 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~-------------Cv~~CP~~Ai~~~~~ 186 (226)
++.++|++|+.|+.+||.+++.+.... .......|..|+. |+.+||++||.+++.
T Consensus 140 id~dkCigCg~Cv~aCP~gai~~~~~~----------~~~~~~KC~~C~~~~~~R~~~G~~PACv~aCP~gAi~fG~~ 207 (328)
T PRK10882 140 YDKDVCTGCRYCMVACPFNVPKYDYNN----------PFGAIHKCELCNQKGVERLDKGGLPGCVEVCPTGAVIFGTR 207 (328)
T ss_pred CCHHHcCcccHHHHhCCccceeccccc----------cccceeecccccccchhhhhcCCCChhhhhccccceEeccH
Confidence 456677777777777777776554321 1123357888887 888888888876653
No 71
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=98.57 E-value=1.7e-08 Score=86.08 Aligned_cols=50 Identities=44% Similarity=0.893 Sum_probs=43.3
Q ss_pred ccCCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCc
Q 027264 118 RRYPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACP 177 (226)
Q Consensus 118 ~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP 177 (226)
..+.++++.|.+|+.|+++||++||..... ...++.+.|+.||.|+.+||
T Consensus 165 ~~P~~~~E~c~gc~~cv~~C~~gAI~~~~~----------~l~id~~~Ci~Cg~Ci~~Cp 214 (317)
T COG2221 165 WKPKVDEELCRGCGKCVKVCPTGAITWDGK----------KLKIDGSKCIGCGKCIRACP 214 (317)
T ss_pred ecCccCHHHhchhHhHHHhCCCCceeeccc----------eEEEehhhccCccHHhhhCC
Confidence 335678899999999999999999987652 45778899999999999999
No 72
>TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase.
Probab=98.57 E-value=2e-08 Score=83.31 Aligned_cols=56 Identities=32% Similarity=0.675 Sum_probs=44.5
Q ss_pred Ccccccccccc--chhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
++.+.|+.|+. |+.+||++||...... + .+.+|.+.|++|+.|+.+||++|+.+.+
T Consensus 89 ~~~~~C~~C~~~~Cv~~CP~gAi~~~~~~---g-----~v~id~~~C~~C~~C~~aCP~~A~~~~~ 146 (225)
T TIGR03149 89 FFRKSCQHCDNAPCVAVCPTGASFKDEET---G-----IVDVHKDLCVGCQYCIAACPYRVRFIHP 146 (225)
T ss_pred ECchhccCCcCcChHhhCCCCcEEEeCCC---C-----eEEechhhCCcchHHHHhCCCCCcEecC
Confidence 34678999996 9999999999764321 1 3457778999999999999999986543
No 73
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.56 E-value=1.7e-08 Score=80.99 Aligned_cols=65 Identities=29% Similarity=0.604 Sum_probs=45.7
Q ss_pred CccccccccccchhccccccccchhhhhccCCc---cccccccCCCCCCcch------hhhhcCcccccccCCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSR---RTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPN 186 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~---~~~~~~~d~~~C~~Cg------~Cv~~CP~~Ai~~~~~ 186 (226)
++.++|++|+.|+.+||.+++.+.......... .......+...|..|+ .|+.+||++||.+.+.
T Consensus 84 i~~~~C~~C~~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~~~~~~~kC~~C~~~~~~paCv~~CP~~Al~~~~~ 157 (181)
T PRK10330 84 VMQERCIGCKTCVVACPYGAMEVVVRPVIRNSGAGLNVRAEKAEANKCDLCNHREDGPACMAACPTHALICVDR 157 (181)
T ss_pred eChhhCCCcchhhhhCCccCeEeeccccccccccccccccCCceeeeCcCCCCCCCCccchhhCchhhEEEeCH
Confidence 567899999999999999999775322100000 0001234456899998 9999999999987653
No 74
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=98.55 E-value=1.3e-08 Score=86.29 Aligned_cols=65 Identities=29% Similarity=0.681 Sum_probs=50.2
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC---CCcccchhcHHHh
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG---PNFEYSTETHEEL 197 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~---~~~~~~~~~~~~~ 197 (226)
.++|++|+.|+++||.+++..+... ....+...|+.|+.|+.+||.+||... +.|.+..++.+.+
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~d~~~---------~~v~~~~~C~~C~~C~~~Cp~~AI~~~~~~~~~if~vEs~Gsl 235 (259)
T cd07030 168 DEDCDGCGKCVEECPRGVLELEEGK---------VVVEDLEDCSLCKLCERACDAGAIRVGWDEDRFIFEVESDGSL 235 (259)
T ss_pred hhhCCChHHHHHhCCccceEccCCe---------eEEeChhhCcCchHHHHhCCCCcEEEEecCCEEEEEEeCCCCC
Confidence 3789999999999999999775431 223566789999999999999999644 4456666666665
No 75
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=98.53 E-value=1.7e-08 Score=89.14 Aligned_cols=52 Identities=33% Similarity=0.769 Sum_probs=43.1
Q ss_pred Cccccccccccch--hccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 122 TGEERCIACKLCE--AVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~--~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
++.++|++|+.|. .+||++++... ..++...|+.|+.|+.+||.+|+.+...
T Consensus 299 id~dkCi~Cg~C~~~~aCPt~AI~~~-------------~~Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 299 YNPERCENCDPCLVEEACPVPAIKKD-------------GTLNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred EchhhCcCCCCCcCCcCCCHhhEecc-------------ceeChHhCcChHHHHhhCCccceEEeCC
Confidence 5678999999995 89999988632 1356678999999999999999987654
No 76
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=98.52 E-value=1.1e-08 Score=80.47 Aligned_cols=59 Identities=31% Similarity=0.639 Sum_probs=46.7
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEY 189 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~ 189 (226)
++.+.|++|.+|+.+||++||.-..+. -..+..+.|++|++|+..||+++|.+...-++
T Consensus 112 i~e~~ciGCtkCiqaCpvdAivg~~~~---------mhtv~~dlCTGC~lCva~CPtdci~m~~~~~~ 170 (198)
T COG2878 112 IDEANCIGCTKCIQACPVDAIVGATKA---------MHTVIADLCTGCDLCVAPCPTDCIEMQPVAET 170 (198)
T ss_pred ecchhccccHHHHHhCChhhhhccchh---------HHHHHHHHhcCCCcccCCCCCCceeeeecccc
Confidence 667899999999999999998754432 12344567999999999999999987765443
No 77
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.52 E-value=2.6e-08 Score=89.97 Aligned_cols=59 Identities=25% Similarity=0.691 Sum_probs=44.1
Q ss_pred CCccccccccccchhccccc---cccchhhhhccCCccccccccCCCCCCcchhhhhcCcc-cccccCCC
Q 027264 121 PTGEERCIACKLCEAVCPAQ---AITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIVEGPN 186 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~---ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~-~Ai~~~~~ 186 (226)
.++.++|++|+.|+.+||.. ++...... . ..+.++...|++||.|+.+||. +||.+...
T Consensus 338 ~~~~~~C~~C~~C~~~Cp~~~~~ai~~~~~~----~---~~~~i~~~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 338 RIDQDKCIGCGRCYIACEDTSHQAIEWDEDG----T---RTPEVIEEECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred EECHHHCCCCCcccccCCCcchhheeeccCC----C---ceEEechhhCcccchHHhhCCCCCCEEEecc
Confidence 35678999999999999974 55442210 0 1245677899999999999999 99976553
No 78
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.51 E-value=1.2e-07 Score=78.03 Aligned_cols=59 Identities=24% Similarity=0.563 Sum_probs=41.5
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch--hhhhcCccccccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG--FCQEACPVDAIVE 183 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg--~Cv~~CP~~Ai~~ 183 (226)
.++|++||.|+++||+++|.+........ .....+..+...|.+|+ .|+++||++||..
T Consensus 52 ~~~Ci~Cg~Cv~aCP~~ai~~~~~~~~~~-~g~p~~~~~~~~C~~C~d~~Cv~~CP~~Ai~~ 112 (213)
T TIGR00397 52 LAACVRCGLCVEACPYDILSLASWSDPAP-LGTPFFTPREVPCRMCKDIPCARACPTGALDP 112 (213)
T ss_pred cccccchhHHHHhCCcccccccccccccc-cCCccccccCCcCCCCCCchHHhHcCHhhhch
Confidence 37999999999999999997653221100 00112223446799998 6999999999974
No 79
>COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion]
Probab=98.51 E-value=4.4e-08 Score=79.33 Aligned_cols=54 Identities=35% Similarity=0.758 Sum_probs=45.3
Q ss_pred cccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 124 EERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 124 ~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...|..|. -|+++||++|+.....++ -+.+|.+.|++|+.|+.+||++|+.+.+
T Consensus 66 ~~~C~HC~~ppCv~vCPtgA~~k~~~dG--------iV~vd~d~CIGC~yCi~ACPyga~~~~~ 121 (203)
T COG0437 66 SISCMHCEDPPCVKVCPTGALFKREEDG--------IVLVDKDLCIGCGYCIAACPYGAPQFNP 121 (203)
T ss_pred cccccCCCCCcccccCCCcceEEecCCC--------EEEecCCcccCchHHHhhCCCCCceeCc
Confidence 45799995 899999999998764222 4578889999999999999999998776
No 80
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.49 E-value=2.5e-08 Score=78.55 Aligned_cols=22 Identities=32% Similarity=0.886 Sum_probs=11.6
Q ss_pred ccccccccccchhccccccccc
Q 027264 123 GEERCIACKLCEAVCPAQAITI 144 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~ 144 (226)
+.++|++|+.|+.+||.+++.+
T Consensus 93 ~~~~C~~C~~C~~aCP~~ai~~ 114 (161)
T TIGR02951 93 DQDKCIGCRYCVWACPYGAPQY 114 (161)
T ss_pred CHHhCCCchHHHhhCCCCCcEE
Confidence 3445555555555555555543
No 81
>PRK07118 ferredoxin; Validated
Probab=98.49 E-value=3.6e-08 Score=84.35 Aligned_cols=52 Identities=38% Similarity=0.696 Sum_probs=44.2
Q ss_pred ccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
..|++||.|+++||+++|...+. ...+|.+.|++|+.|+.+||.++|.+.+.
T Consensus 139 ~~CigCg~C~~aCp~~AI~~~~g----------~~~id~~~C~~Cg~Cv~aCP~~ai~~~~~ 190 (280)
T PRK07118 139 YGCLGLGSCVAACPFDAIHIENG----------LPVVDEDKCTGCGACVKACPRNVIELIPK 190 (280)
T ss_pred CCCcChhHHHHhCCccCeEccCC----------eEEEChhhCcChhHHHHhcCccceeeecc
Confidence 47999999999999999986541 35678899999999999999999987643
No 82
>TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein. MauM is involved in methylamine utilization. NapG is associated with nitrate reductase activity. The two proteins are highly similar.
Probab=98.49 E-value=4.4e-08 Score=80.65 Aligned_cols=60 Identities=38% Similarity=0.852 Sum_probs=44.2
Q ss_pred Ccccccc-----ccccchhcccc--ccccchhhhhccCCccccccccCCCCCCcchhhhhcCccc--cccc
Q 027264 122 TGEERCI-----ACKLCEAVCPA--QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD--AIVE 183 (226)
Q Consensus 122 ~~~~~Ci-----~Cg~C~~~CP~--~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~--Ai~~ 183 (226)
++.++|+ .|+.|+++||+ .||.+.......+ ......++.+.|++||.|+.+||++ ||..
T Consensus 128 id~~~C~~~~g~~C~~C~~~CP~~~~AI~~~~~~~~~~--~~~~p~Vd~~~C~gCG~C~~~CP~~~~AI~v 196 (213)
T TIGR00397 128 VGHETCLNYKGLNCSICVRVCPIRGEAISLKPIENERG--RLQIPTVDSAKCTGCGTCEKHCVLSEAAIRV 196 (213)
T ss_pred ECCCCcccCCCCCcccchhhCCCCcceEEEecccccCC--cccceEEecccCCCcchhhHhCCCCCCeEEE
Confidence 5678898 99999999998 6887654321111 1113467888999999999999987 6654
No 83
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.48 E-value=2.9e-08 Score=84.84 Aligned_cols=53 Identities=28% Similarity=0.624 Sum_probs=31.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch---------hhhhcCcccccccCCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPN 186 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg---------~Cv~~CP~~Ai~~~~~ 186 (226)
++.++|++|+.|+.+||.+++.++... .....|..|. .|+.+||++||.+++.
T Consensus 121 id~dkCigC~~Cv~aCP~~a~~~~~~~------------~~~~KC~~C~dr~~~G~~PaCv~aCP~gAi~fg~~ 182 (283)
T TIGR01582 121 FDHSKCIGCGYCIVGCPFNIPRYDKVD------------NRPYKCTLCIDRVSVGQEPACVKTCPTNAISFGFK 182 (283)
T ss_pred EeHHHCCcchHHHhhCCCCCcEEcCCC------------CChhhhcccccccccCCCChHhCcccHhhEEECCH
Confidence 455667777777777776666553311 1123566663 6777777777766554
No 84
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=98.46 E-value=5.6e-09 Score=86.40 Aligned_cols=108 Identities=21% Similarity=0.351 Sum_probs=56.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCcceecCccccCC---CCCCccCccccccCCCccccccccccchhccccccccchh--
Q 027264 72 INMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGP---LSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEA-- 146 (226)
Q Consensus 72 i~~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~-- 146 (226)
+.++..+.++++|.+++..+|++.....-...... .....+.............+|+.||.|..+||+.....+.
T Consensus 82 iepl~~~pvikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~CG~C~~~CP~~~~~~~~~g 161 (220)
T TIGR00384 82 IEPLPNLPVIKDLVVDMGPFYAKLEAIKPYLIRKSQPEPEGEFLQTPEQREKLDQLSGCILCGCCYSSCPAFWWNPEFLG 161 (220)
T ss_pred EeeCCCCceeeeeeechHHHHHHHHhcCCeecCCCCCCccccccCCHHHHHHHhhhhhccccccccccCCCCccCCCCcC
Confidence 44555667788888888877764332221000100 0001111110001112457899999999999985332110
Q ss_pred ------------hhhccCCccc-c-cc-ccCCCCCCcchhhhhcCccc
Q 027264 147 ------------EEREDGSRRT-T-RY-DIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 147 ------------~~~~~~~~~~-~-~~-~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
+.+....... . .. ....+.|+.||.|+.+||++
T Consensus 162 p~~~~~~~r~~~d~~~~~~~~r~~~~~~~~~~~~C~~Cg~C~~~CP~~ 209 (220)
T TIGR00384 162 PAALTAAYRFLIDSRDHATKDRLEGLNDKNGVWRCTTCMNCSEVCPKG 209 (220)
T ss_pred HHHHHHHHHHhcCCCccchHHHHHHhhccCCCccCccccccccccCCC
Confidence 0000000000 0 01 23467899999999999998
No 85
>PRK14993 tetrathionate reductase subunit B; Provisional
Probab=98.44 E-value=5.4e-08 Score=81.67 Aligned_cols=54 Identities=31% Similarity=0.703 Sum_probs=44.1
Q ss_pred ccccccccc--chhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 124 EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 124 ~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
...|+.|+. |+.+||++++...... .+.++.+.|++|+.|+.+||++||.+...
T Consensus 97 ~~~C~~C~~p~Cv~~CP~~Ai~~~~~G---------~v~id~~~CigC~~Cv~aCP~~Ai~~~~~ 152 (244)
T PRK14993 97 PRLCNHCDNPPCVPVCPVQATFQREDG---------IVVVDNKRCVGCAYCVQACPYDARFINHE 152 (244)
T ss_pred chhcCCcCCccCccccCCCCEEECCCC---------CEEEcHHHCCCHHHHHHhcCCCCCEEeCC
Confidence 568999996 9999999998654321 34677789999999999999999986553
No 86
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=98.44 E-value=6.1e-08 Score=91.43 Aligned_cols=64 Identities=23% Similarity=0.430 Sum_probs=43.0
Q ss_pred cCCCccccccccccchhcccc----ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 119 RYPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+..+.++||.||+|+++|-. .+|.+.. |+....... ..-....|..||.|+++||+|||..+.
T Consensus 136 ~i~~d~~rCI~C~rCvr~c~e~~g~~~l~~~~--rg~~~~i~~-~~~~~~~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 136 LIKTEMTRCIHCTRCVRFANEVAGVEDLGVIG--RGNNVEIGT-YEGKTLESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CeEecCCcCccccHHHHHHHHhhCCceEEEec--cCCCCEEec-CCCCCCCCcccCChHhhCCcccccccc
Confidence 355788999999999999973 3444433 332222111 111223688999999999999998664
No 87
>TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing. In addition to the gamma proteobacteria, a sequence from Aquifex aolicus falls within the scope of this model. This appears to be the case for the alpha, gamma and epsilon (accessory protein TIGR01562) chains as well.
Probab=98.44 E-value=5.3e-08 Score=83.24 Aligned_cols=54 Identities=33% Similarity=0.756 Sum_probs=43.6
Q ss_pred cccccccccc--chhcccc-ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 123 GEERCIACKL--CEAVCPA-QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 123 ~~~~Ci~Cg~--C~~~CP~-~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..++|+.|+. |+++||+ +++...... .+.++.+.|++|+.|+.+||.+|+.+..
T Consensus 89 ~~~~C~hC~~p~Cv~aCP~~gA~~~~~~G---------~V~id~dkCigC~~Cv~aCP~~a~~~~~ 145 (283)
T TIGR01582 89 RKDGCMHCREPGCLKACPAPGAIIQYQNG---------IVDFDHSKCIGCGYCIVGCPFNIPRYDK 145 (283)
T ss_pred CCccCCCCCCccccCCCCcCCeEEEcCCC---------cEEEeHHHCCcchHHHhhCCCCCcEEcC
Confidence 4578999998 9999998 677554321 3467788999999999999999998754
No 88
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=98.43 E-value=7.2e-09 Score=85.68 Aligned_cols=105 Identities=25% Similarity=0.458 Sum_probs=58.8
Q ss_pred HhhhHHHHHHHHHHHHHhcCCcceecCcccc---CCCCCCccCccccccCCCccccccccccchhccccccccc------
Q 027264 74 MLFLTEMVRGLGLTLKYFFDKKVTINYPFEK---GPLSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITI------ 144 (226)
Q Consensus 74 ~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~---~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~------ 144 (226)
++..+.++++|.+++..||+....+. |+-. ......+...+.-.........||.||.|..+||+.....
T Consensus 89 PL~~fpVIkDLVVD~~~f~~~~~~ik-p~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~Cg~C~s~CP~~~~~~~f~GPa 167 (234)
T COG0479 89 PLPNFPVIRDLVVDMEEFYEKLRKIK-PYLIRDDEPDPGERLQSPEEREKLDELSECILCGCCTAACPSIWWNPDFLGPA 167 (234)
T ss_pred ECCCCCceeeeeeccHHHHHhhhccc-cceecCCcCCCccccCCHHHHHHHHhhhhccccchhhhhCCccccccCCcCHH
Confidence 44556789999999999998643332 1111 1111112222211112234568999999999999743322
Q ss_pred --------hhhhhccCCccc-cccc--cCCCCCCcchhhhhcCccc
Q 027264 145 --------EAEEREDGSRRT-TRYD--IDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 145 --------~~~~~~~~~~~~-~~~~--~d~~~C~~Cg~Cv~~CP~~ 179 (226)
..+.|+.++... .... ...+.|..|+.|+++||++
T Consensus 168 ~l~~a~R~~~D~rd~~~~~R~~~~~~~~gv~~C~~~~~C~~vCPK~ 213 (234)
T COG0479 168 ALRQAYRFLADSRDEGTAERLKILEDPDGVWRCTTCGNCTEVCPKG 213 (234)
T ss_pred HHHHHHHHhcCCcccchHHHHHhccCCCCEecccccccccccCCCC
Confidence 111121111111 1111 1247899999999999998
No 89
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.42 E-value=6.3e-08 Score=81.74 Aligned_cols=62 Identities=35% Similarity=0.755 Sum_probs=44.8
Q ss_pred Ccccccc-----ccccchhcccc--ccccchhhhhc-cCCccccccccCCCCCCcchhhhhcCccc--cccc
Q 027264 122 TGEERCI-----ACKLCEAVCPA--QAITIEAEERE-DGSRRTTRYDIDMTKCIYCGFCQEACPVD--AIVE 183 (226)
Q Consensus 122 ~~~~~Ci-----~Cg~C~~~CP~--~ai~~~~~~~~-~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~--Ai~~ 183 (226)
++.++|+ .|+.|+.+||+ +||.++..... .+........++.+.|++||.|+.+||++ ||..
T Consensus 134 id~~~Ci~~~~~~C~~C~~~CP~~~~AI~~~~~~~~r~g~~~~~~p~Id~d~C~gCG~C~~aCP~~~~AI~v 205 (254)
T PRK09476 134 VDQENCLNFQGLRCDVCYRVCPLIDKAITLELERNERTGKHAFFLPTVHSDACTGCGKCEKACVLEKAAIKV 205 (254)
T ss_pred cchhhccccCCCchHHHhhhCCCccCeEEEEcccccccccccccceEEeHHHCcCcChhhHhcCCCcceEEE
Confidence 6788999 89999999996 78877543211 01111123457778999999999999998 7763
No 90
>PRK09898 hypothetical protein; Provisional
Probab=98.42 E-value=8.4e-08 Score=78.72 Aligned_cols=54 Identities=33% Similarity=0.794 Sum_probs=44.1
Q ss_pred CCCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+.++.++|++|+.|+.+||.+++.++.. ..+...|++||.|+.+||++||.+.+
T Consensus 149 v~vd~~~CigC~~C~~aCP~~ai~~~~~------------~~~~~kC~~Cg~Cv~~CP~~Ai~~~~ 202 (208)
T PRK09898 149 ITVDHKRCIGCSACTTACPWMMATVNTE------------SKKSSKCVLCGECANACPTGALKIIE 202 (208)
T ss_pred EEeccccCCCcCcccccCCCCCCEecCC------------CCcCCcCcChHHHHHhCCcccEEEec
Confidence 3467789999999999999998876432 12356899999999999999998654
No 91
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=98.41 E-value=8.5e-08 Score=92.91 Aligned_cols=66 Identities=24% Similarity=0.348 Sum_probs=43.1
Q ss_pred cCCCccccccccccchhcccc--ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 119 RYPTGEERCIACKLCEAVCPA--QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~~CP~--~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+..+.++||.||+|+++|-. +.-.+....|+...+.... .-....|..||.|+++||+|||..+.
T Consensus 138 ~i~~d~~rCi~C~rCvr~c~ev~g~~~l~~~~rg~~~~i~~~-~~~~~~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 138 LISTEMTRCIHCTRCVRFGQEIAGVMELGMMGRGEHSEITTY-VGKTVDSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred ceeecccccccCcHHHHHHHHhcCCceeeeeccCCCCEEcCC-CCCCccCcccCCchhhCCcccccccc
Confidence 345678999999999999973 3222222333333222111 11233588899999999999998764
No 92
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=98.40 E-value=6.4e-08 Score=80.48 Aligned_cols=54 Identities=33% Similarity=0.771 Sum_probs=44.2
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
.++.++|++|+.|+.+||.+++..... ...++...|+.|+.|+.+||.+.+...
T Consensus 170 ~id~~~C~~C~~C~~aCP~~ai~~~~~----------~~~i~~~~C~~C~~C~~~CP~~~~~~~ 223 (228)
T TIGR03294 170 VVNQGLCMGCGTCAAACPTRAIEMEDG----------RPNVNRDRCIKCGACYVQCPRAFWPEY 223 (228)
T ss_pred EEChhhCcChhHHHHhCCHhhEEEeCC----------cEEEChhhccCHHHHHHHcCCCCcchh
Confidence 366789999999999999999876432 134677889999999999999977653
No 93
>TIGR01660 narH nitrate reductase, beta subunit. The Nitrate reductase enzyme complex allows bacteria to use nitrate as an electron acceptor during anaerobic growth. The enzyme complex consists of a tetramer that has an alpha, beta and 2 gamma subunits. The alpha and beta subunits have catalytic activity and the gamma subunits attach the enzyme to the membrane and is a b-type cytochrome that receives electrons from the quinone pool and transfers them to the beta subunit. This model is specific for the beta subunit for nitrate reductase I (narH) and nitrate reductase II (narY) for gram positive and gram negative bacteria.A few thermophiles and archaea also match the model.The seed members used in this model are all experimentally characterized and include the following: NarH and NarY, both E.Coli, sequences from B. Subtilis, Pseudomonas fluorescens, Paracoccus denitrificans, and Halomonas halodenitrificans. This model also matches PFAM pfam00037 for 4Fe-4S binding domain.
Probab=98.39 E-value=1e-07 Score=85.16 Aligned_cols=54 Identities=24% Similarity=0.538 Sum_probs=43.8
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch---------hhhhcCcccccccCCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG---------FCQEACPVDAIVEGPN 186 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg---------~Cv~~CP~~Ai~~~~~ 186 (226)
.++.++|++|+.|+.+||.+++.+.... ....+|.+|. .|+.+||.+|+.++..
T Consensus 210 ~ID~dkCiGCg~CV~ACPygAI~~n~~~------------g~~~KCd~C~~Rie~G~pPaCVeaCP~~Ar~fG~l 272 (492)
T TIGR01660 210 LIDQDKCRGWRMCISGCPYKKIYFNWKT------------GKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVL 272 (492)
T ss_pred EEehhhccChHHHHHhCCCCCcEecCCC------------CccccCCCChhHHhCCCCCcchhhcChhhhhhhhh
Confidence 3678999999999999999999876431 1236899995 6999999999887753
No 94
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=98.39 E-value=9.7e-09 Score=87.25 Aligned_cols=109 Identities=18% Similarity=0.352 Sum_probs=57.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCcceecCccccCCCCC----CccCccccccCCCccccccccccchhccccccccchh-
Q 027264 72 INMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLSP----RFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEA- 146 (226)
Q Consensus 72 i~~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~~~~----~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~- 146 (226)
+.++..++++++|.+++..||+......-......... .....+...........||.||.|..+||+.....+.
T Consensus 130 iePl~~fpVirDLvVD~~~f~~klk~v~p~l~~~~~~~~~~~~~~q~pe~~~~~~~~~~CI~CG~C~saCPv~~~~~~~f 209 (276)
T PLN00129 130 ITPLPHMFVIKDLVVDMTNFYQQYKSIEPWLKTKKPPEDGQKEHLQSKEDRAKLDGMYECILCACCSTSCPSYWWNPEKF 209 (276)
T ss_pred EEECCCCCeeeecccccHHHHHHHHhccccccCCCCCCCCccccCCCHHHHHHHhhhhhCccccccccccCCCcccCccc
Confidence 33555567899999999998885443331111111100 1111111001112235799999999999964221110
Q ss_pred --------------hhhccCCccccc-c--ccCCCCCCcchhhhhcCcccc
Q 027264 147 --------------EEREDGSRRTTR-Y--DIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 147 --------------~~~~~~~~~~~~-~--~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
+.+......... . ....+.|+.|+.|..+||.+.
T Consensus 210 lGP~~l~~a~R~~~D~RD~~~~erl~~l~~~~gl~~C~~C~~C~~vCPkgI 260 (276)
T PLN00129 210 LGPAALLHAYRWISDSRDEYTKERLEALDDEFKLYRCHTIRNCSNACPKGL 260 (276)
T ss_pred ccHHHHHHHHHhcCCccccchHHHHHHHHhcCCCCcCcChhhccccCCCCC
Confidence 001100000001 1 114589999999999999984
No 95
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.39 E-value=9.6e-09 Score=85.64 Aligned_cols=109 Identities=19% Similarity=0.319 Sum_probs=58.2
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCcceecCccccCC--CCCCccCccccccCCCccccccccccchhccccccccch----
Q 027264 72 INMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGP--LSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE---- 145 (226)
Q Consensus 72 i~~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~---- 145 (226)
+.++..+.++++|.+++..+|+......-...... ...+.+..+...........|+.||.|..+||+.....+
T Consensus 89 iePl~~~pvikDLvvD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~s~CP~~~~~~~~f~G 168 (235)
T PRK12575 89 LRPLPGLPVVRDLIVDMTDFFNQYHSIRPYLINDTVPPERERLQTPQEREQLDGLYECILCACCSTACPSYWWNPDKFVG 168 (235)
T ss_pred EeECCCCCccccceecCHHHHHHHHhccCccccCCCCccccccCCHHHHHHHHhhhhCcccccccccccCccccCCCcCC
Confidence 33555667899999999888875444331111110 001111111111111245689999999999997533211
Q ss_pred hh-----------hhccCCccccc-cc--cCCCCCCcchhhhhcCcccc
Q 027264 146 AE-----------EREDGSRRTTR-YD--IDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 146 ~~-----------~~~~~~~~~~~-~~--~d~~~C~~Cg~Cv~~CP~~A 180 (226)
+. .+......... +. ...+.|+.||.|..+||.+.
T Consensus 169 P~~~~~a~r~~~D~rd~~~~~rl~~l~~~~gl~~C~~C~~C~~vCPkgI 217 (235)
T PRK12575 169 PAGLLQAYRFIADSRDDATAARLDDLEDPYRLFRCRTIMNCVDVCPKGL 217 (235)
T ss_pred HHHHHHHHHHHhCCCCCCcHHHHHhhhcCCCcccccCcchhccccCCCC
Confidence 10 00000000001 11 13578999999999999983
No 96
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.38 E-value=1.2e-07 Score=93.26 Aligned_cols=59 Identities=29% Similarity=0.603 Sum_probs=40.3
Q ss_pred ccccccc----cccchhcccccccc-chhhhhccCCccccccccCCC-CCCcchhhhhcCcccccccCCC
Q 027264 123 GEERCIA----CKLCEAVCPAQAIT-IEAEEREDGSRRTTRYDIDMT-KCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 123 ~~~~Ci~----Cg~C~~~CP~~ai~-~~~~~~~~~~~~~~~~~~d~~-~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
+.++|.+ ||.|+.+||.+|+. +........ ...++.+ .|+.||.|+.+||++|+.+...
T Consensus 879 ~~~rC~~c~~~Cg~Cv~vCP~~Aii~i~~~~~~~~-----~~~i~~d~~C~~CG~C~~vCP~~a~~~~gk 943 (1012)
T TIGR03315 879 ESQRCLECSYVCEKCVDVCPNRANIVIYVPGFRDQ-----FQIVHLDGMCNECGNCATFCPYDGAPYKDK 943 (1012)
T ss_pred ccccccCCCCCCCChhhhCChhhhhccccccccCC-----ceeeecCccccccchHHHhCCCCcccceee
Confidence 4479996 99999999999752 211000000 1112223 4999999999999999988776
No 97
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=98.37 E-value=1.4e-07 Score=82.95 Aligned_cols=61 Identities=30% Similarity=0.529 Sum_probs=42.7
Q ss_pred CccccccccccchhccccccccchhhhhccCCc--cccccccCCCCCCcchhhhhcCcccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSR--RTTRYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~--~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
++.++|++||.|+.+||+++|.+.......... ......++.+.|+.||.|..+||..++.
T Consensus 9 i~~~~C~gCg~C~~~CP~~aI~~~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~C~~vCP~~~~~ 71 (341)
T PRK09326 9 IEYDVCTACGACEAVCPIGAITVDKKAEIRDPNDLELYEKGAAPNVCEGCLTCSRICPVVDGY 71 (341)
T ss_pred ECcccCcChHHHHHhCCHhhhecccCcccccccchhhhccCCCcCcCcCcCchhhhCCCCccc
Confidence 567899999999999999998875432210000 0011124667899999999999986653
No 98
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.36 E-value=2.3e-08 Score=85.56 Aligned_cols=110 Identities=22% Similarity=0.410 Sum_probs=58.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHhcCCcceec-CccccCC-C--CCCccCccccccCCCccccccccccchhccccccccchh
Q 027264 71 SINMLFLTEMVRGLGLTLKYFFDKKVTIN-YPFEKGP-L--SPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 71 ~i~~~~~~~~~~~l~~~~~~~f~~~~~~~-~p~~~~~-~--~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.+.++..+.++++|.+++..+|++..... |-..... . .......+.......+.+.|+.||.|..+||+.....+.
T Consensus 94 tiePl~~~~vikDLvvD~~~~~~k~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~CI~CG~C~~~CP~~~~~~~f 173 (279)
T PRK12576 94 TIEPMDYFKVVKDLIVDFDEFYERMFKVKPRLYRAKEVLEGKAEHRLKPEDQKELWKFAQCIWCGLCVSACPVVAIDPEF 173 (279)
T ss_pred EEEECCCCceeecceechHHHHHHHHhccceeccCccCCCCccccccCHHHHHHhhcchhCcccCcccccCCCccccCCc
Confidence 34455566788999999888886433322 1110110 0 011111111111223567999999999999986432110
Q ss_pred --------------hhhccCCcccc-ccccCCCCCCcchhhhhcCcccc
Q 027264 147 --------------EEREDGSRRTT-RYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 147 --------------~~~~~~~~~~~-~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
+.+..+..... ......+.|+.||.|+.+||.+.
T Consensus 174 lgP~~l~~a~r~~~d~rd~~~~~rl~~~~~~i~~C~~Cg~C~~~CP~~I 222 (279)
T PRK12576 174 LGPAAHAKGYRFLADPRDTITEERMKILIDSSWRCTYCYSCSNVCPRDI 222 (279)
T ss_pred CCHHHHHHHHHHhcCccccchHHHHHHHcCcCCcccCcccchhhCCCCC
Confidence 00110000000 11224579999999999999874
No 99
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.36 E-value=1e-07 Score=50.76 Aligned_cols=22 Identities=55% Similarity=0.997 Sum_probs=14.6
Q ss_pred ccCCCCCCcchhhhhcCccccc
Q 027264 160 DIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.+|.+.|++||.|+.+||.+||
T Consensus 3 ~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcChhHHHHhcchhcC
Confidence 3555667777777777776665
No 100
>PRK13795 hypothetical protein; Provisional
Probab=98.35 E-value=1e-07 Score=90.23 Aligned_cols=54 Identities=39% Similarity=0.916 Sum_probs=44.0
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
.+.+.|++||.|+.+||++++....... .+.++...|+.||.|+.+||.+++..
T Consensus 578 ~~~~~C~~Cg~C~~~CP~~ai~~~~~~~--------~~~id~~~C~~Cg~C~~aCP~~a~~~ 631 (636)
T PRK13795 578 RRAAECVGCGVCVGACPTGAIRIEEGKR--------KISVDEEKCIHCGKCTEVCPVVKYKD 631 (636)
T ss_pred EccccCCCHhHHHHhCCcccEEeecCCc--------eEEechhhcCChhHHHhhcCCCeeEe
Confidence 4567999999999999999987754211 24567789999999999999999864
No 101
>TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.
Probab=98.33 E-value=1.8e-07 Score=73.67 Aligned_cols=55 Identities=33% Similarity=0.619 Sum_probs=42.8
Q ss_pred ccccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 123 GEERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
....|+.|+ .|+++||+++|...... ..+.++.+.|++|+.|+.+||.+||.+..
T Consensus 60 ~~~~C~~C~~~~C~~~CP~~ai~~~~~~--------~~~~i~~~~C~~C~~C~~aCP~~ai~~~~ 116 (161)
T TIGR02951 60 ISISCNHCADPACVKNCPTGAMYKREED--------GLVLVDQDKCIGCRYCVWACPYGAPQYDP 116 (161)
T ss_pred cCccCCCcCCcchHHhCCCCCEEeecCC--------CcEEECHHhCCCchHHHhhCCCCCcEEcC
Confidence 357899999 99999999998654211 13456778899999999999999987654
No 102
>PRK09476 napG quinol dehydrogenase periplasmic component; Provisional
Probab=98.33 E-value=1.9e-07 Score=78.78 Aligned_cols=60 Identities=25% Similarity=0.556 Sum_probs=41.4
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch--hhhhcCcccccccC
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG--FCQEACPVDAIVEG 184 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg--~Cv~~CP~~Ai~~~ 184 (226)
.++|++||.|+.+||+++|.+......... ....+......|..|+ .|+.+||++||.+.
T Consensus 58 ~~~Ci~Cg~Cv~aCP~~aI~~~~~~~~~~~-g~p~~~~~~~~C~~C~~~~Cv~aCPtgAL~~~ 119 (254)
T PRK09476 58 LSACIRCGLCVQACPYDTLKLATLASGLSA-GTPYFVARDIPCEMCEDIPCVKACPSGALDRE 119 (254)
T ss_pred hhhCcCchHHHHhCCccccCcccccccccc-CCceeeecCCcCcCCCCCchhhccCccceEee
Confidence 378999999999999999976532211000 0001222335799999 59999999999764
No 103
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.33 E-value=1.7e-08 Score=84.93 Aligned_cols=109 Identities=18% Similarity=0.305 Sum_probs=56.9
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCcceecCccccCC---CCCCccCccccccCCCccccccccccchhccccccccchhh-
Q 027264 72 INMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGP---LSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEAE- 147 (226)
Q Consensus 72 i~~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~- 147 (226)
+.|+..+.++++|.+++..+|+....+.-...... ........+...........||.||.|.++||+....-+..
T Consensus 96 iePl~~fpVikDLvVD~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~saCP~~~~~~~f~G 175 (249)
T PRK08640 96 LEPMSTFPVVRDLQVDRSRMFDNLKRVKAWIPIDGTYDLGPGPRMPEEKRQWAYELSKCMTCGCCLEACPNVNEKSDFIG 175 (249)
T ss_pred EEECCCCCccccCcEEChHHHHHHHhhCCccccCCCCCCCcccCCCHHHHHHHhhhhhccCcCcccccCCCCccCCCccC
Confidence 34555567899999998888774333221111110 01111111111111234578999999999999754311000
Q ss_pred -------------h-hccCCccc-ccc--ccCCCCCCcchhhhhcCcccc
Q 027264 148 -------------E-REDGSRRT-TRY--DIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 148 -------------~-~~~~~~~~-~~~--~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
. +....... ... ....+.|+.||.|..+||.+.
T Consensus 176 P~~l~ka~r~~~d~~rd~~~~~rl~~l~~~~g~~~C~~Cg~C~~vCPkgI 225 (249)
T PRK08640 176 PAAISQVRLFNAHPTGEMHKEERLRALMGDGGIADCGNAQNCVRVCPKGI 225 (249)
T ss_pred hHHHHHHHHHhcCcCcCccHHHHHHHhhcCCCeeCCcCcCcccccCCCCC
Confidence 0 00000000 011 123478999999999999983
No 104
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=98.32 E-value=2e-08 Score=84.04 Aligned_cols=108 Identities=18% Similarity=0.339 Sum_probs=57.5
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCc-ceec-CccccCCCC---CCccCccccccCCCccccccccccchhccccccccchh
Q 027264 72 INMLFLTEMVRGLGLTLKYFFDKK-VTIN-YPFEKGPLS---PRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 72 i~~~~~~~~~~~l~~~~~~~f~~~-~~~~-~p~~~~~~~---~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
+.++..+.++++|.+++..+|+.. .... |........ ......+...........|+.||.|.++||+....-+.
T Consensus 91 iePl~~fpVirDLvVD~~~~~~~~~~~v~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~~~f 170 (239)
T PRK13552 91 LMPLPVFKLIGDLSVNTGKWFREMSERVESWIHTDKEFDIHRLEERMEPEEADEIYELDRCIECGCCVAACGTKQMREDF 170 (239)
T ss_pred EEECCCCCcceeCccccHHHHHHHHHhhcCccccCCCCCCcccccCCCHHHHHHhhchhhccccchhHhhCCCCccCCCc
Confidence 345556678999999998888754 2222 111110100 01111111111223457899999999999964321110
Q ss_pred --------------hhhccCCcccc-cc---ccCCCCCCcchhhhhcCccc
Q 027264 147 --------------EEREDGSRRTT-RY---DIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 147 --------------~~~~~~~~~~~-~~---~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
+.+........ .. ....+.|+.||.|..+||.+
T Consensus 171 ~GP~~~~~a~r~~~d~rd~~~~~~~~~~l~~~~gi~~C~~C~~C~~vCPk~ 221 (239)
T PRK13552 171 VGAVGLNRIARFELDPRDERTDEDFYELIGNDDGVFGCMSLLGCEDNCPKD 221 (239)
T ss_pred cChHHHHHHHHHhhCCCcchhHHHHHHHhccCCCcCCCcCcCccchhCCCC
Confidence 00110000000 11 12457999999999999987
No 105
>PRK10882 hydrogenase 2 protein HybA; Provisional
Probab=98.32 E-value=2.1e-07 Score=81.19 Aligned_cols=54 Identities=28% Similarity=0.663 Sum_probs=44.2
Q ss_pred ccccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC
Q 027264 123 GEERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
....|+.|+ .|+.+||++++..+... ..+.++.+.|++|+.|+.+||.++|.+.
T Consensus 108 ~~~~C~hC~~p~Cv~aCP~gAi~k~~~~--------g~V~id~dkCigCg~Cv~aCP~gai~~~ 163 (328)
T PRK10882 108 IKKQCMHCVDPNCVSVCPVSALTKDPKT--------GIVHYDKDVCTGCRYCMVACPFNVPKYD 163 (328)
T ss_pred ccccCCCcCchhhHhhCCCCCEEecccC--------CcccCCHHHcCcccHHHHhCCccceecc
Confidence 457899998 89999999999875421 1345777899999999999999999754
No 106
>PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional
Probab=98.31 E-value=1.8e-07 Score=75.11 Aligned_cols=52 Identities=31% Similarity=0.633 Sum_probs=42.8
Q ss_pred cccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 124 EERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 124 ~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...|+.|+ .|+.+||++++..... ...++.+.|++|+.|+.+||.+||.+..
T Consensus 55 ~~~C~~C~~~~C~~~Cp~~ai~~~~~----------~v~i~~~~C~~C~~C~~~CP~~ai~~~~ 108 (181)
T PRK10330 55 ATVCRQCEDAPCANVCPNGAISRDKG----------FVHVMQERCIGCKTCVVACPYGAMEVVV 108 (181)
T ss_pred CCcCcCcCCcHHHHHcCcccEEccCC----------eEEeChhhCCCcchhhhhCCccCeEeec
Confidence 35899999 8999999999876421 2456778999999999999999997654
No 107
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.31 E-value=1.9e-08 Score=84.49 Aligned_cols=110 Identities=19% Similarity=0.324 Sum_probs=58.4
Q ss_pred HHHHhhhHHHHHHHHHHHHHhcCCcceecCccccCCCC-CCccCccccccCCCccccccccccchhccccccccchh---
Q 027264 71 SINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGPLS-PRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEA--- 146 (226)
Q Consensus 71 ~i~~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~--- 146 (226)
.+.++..+.++++|.+++..+|+....+.-........ ...+..+...........||.||.|.++||+....-..
T Consensus 87 tiepl~~fpVikDLvVD~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~CI~CG~C~s~CPv~~~~~~~~~~ 166 (251)
T PRK12386 87 TVTPMRTFPVIRDLVTDVSFNYEKAREIPSFTPPKDLQPGEYRMQQVDVERSQEFRKCIECFLCQNVCHVVRDHEENKPA 166 (251)
T ss_pred EEccCCCCCccccceEEcHHHHHHHHhcCCcccCCCCCccccCCCHHHHHHHhchhhcccCCcccCcCCcccccCCCccc
Confidence 34455566789999999888887544332111111100 11111111111123457899999999999975332100
Q ss_pred hhhc---------------cCCcccc-ccccCCCCCCcchhhhhcCcccc
Q 027264 147 EERE---------------DGSRRTT-RYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 147 ~~~~---------------~~~~~~~-~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
..+. ...+... ......+.|..|+.|..+||.+.
T Consensus 167 f~GP~~~~~a~r~~~D~Rd~~~rl~~~~~~~gl~~C~~C~~C~~vCPkgI 216 (251)
T PRK12386 167 FAGPRFLMRIAELEMHPLDTADRRAEAQEEHGLGYCNITKCCTEVCPEHI 216 (251)
T ss_pred ccCHHHHHHHHHhhcCccchHHHHHHhhcccCcccCcCCCCcCCcCCCCc
Confidence 0000 0000000 01123577999999999999983
No 108
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=98.31 E-value=2.3e-07 Score=78.72 Aligned_cols=63 Identities=21% Similarity=0.246 Sum_probs=40.2
Q ss_pred CCCccccccccccchhcccc----ccccchhhhhccCCccccccccCCCCCC--cchhhhhcCcccccccCCC
Q 027264 120 YPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRRTTRYDIDMTKCI--YCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~~~~~~~d~~~C~--~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
+..+.++||.||+|+++|-. ++|.+.. |+....... ..+...|. +||.|+++||+|||..++.
T Consensus 207 i~~D~nKCIlCgRCVRaC~EVqg~~aL~~~~--RG~~t~I~t--~~d~~~~~~~~~g~cvdvCPvGAL~~~d~ 275 (297)
T PTZ00305 207 TRVVLNRCIHCTRCVRFLNEHAQDFNLGMIG--RGGLSEIST--FLDELEVKTDNNMPVSQLCPVGKLYLGDA 275 (297)
T ss_pred eeecCCcCcCccHHHHHHHHhhCCcEEEEee--cCCCCEEee--cCCCcccccCCCCceeeECCCcccccCCc
Confidence 44668999999999999994 4454433 332222111 11222243 3567999999999987764
No 109
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=98.31 E-value=2.7e-08 Score=83.66 Aligned_cols=59 Identities=24% Similarity=0.604 Sum_probs=36.0
Q ss_pred Cccccccccccchhcccccccc-----------chhhhhcc-CCccc---cccc-cCCCCCCcchhhhhcCcccc
Q 027264 122 TGEERCIACKLCEAVCPAQAIT-----------IEAEERED-GSRRT---TRYD-IDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~-----------~~~~~~~~-~~~~~---~~~~-~d~~~C~~Cg~Cv~~CP~~A 180 (226)
.....||.||.|+++||+.... +.+..... ..+.. .... ...+.|+.||.|+.+||.+.
T Consensus 154 ~~~~~CI~CG~C~saCP~~~~~~f~Gp~~~~~~l~p~~~~~r~~~~~~~~~~~~~~gv~~C~~Cg~Cs~VCPk~I 228 (250)
T PRK07570 154 FDAAACIGCGACVAACPNGSAMLFTGAKVSHLALLPQGQPERARRVRAMVAQMDEEGFGNCTNTGECEAVCPKGI 228 (250)
T ss_pred hCccccCCCcccccccCCcccccccchhhhhhhhCcccchhHHHHHHHHHHHHhccCcccCcccCccccccCCCC
Confidence 4467899999999999986432 00000000 00000 0111 23578999999999999984
No 110
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.30 E-value=2.1e-07 Score=49.61 Aligned_cols=22 Identities=68% Similarity=1.244 Sum_probs=15.1
Q ss_pred cCCCCCCcchhhhhcCcccccc
Q 027264 161 IDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 161 ~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
+|.+.|++||.|+.+||++||+
T Consensus 3 id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-THHHHHSTTSSEE
T ss_pred EchHHCCCcchhhhhcccccCC
Confidence 4556777777777777777763
No 111
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.30 E-value=2.7e-07 Score=87.82 Aligned_cols=64 Identities=27% Similarity=0.597 Sum_probs=47.7
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch------hhhhcCcccccccCCCccc
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG------FCQEACPVDAIVEGPNFEY 189 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg------~Cv~~CP~~Ai~~~~~~~~ 189 (226)
.++.++|++|+.|+.+||.+++.+....... .....+...|..|+ .|+.+||++||.+.+..++
T Consensus 81 ~id~~~C~~C~~C~~~CP~~ai~~~~~~~~~-----~~~~~~~~~C~~C~~~~~~p~Cv~~CP~~Ai~~~~~~~~ 150 (654)
T PRK12769 81 QVNQQKCIGCKSCVVACPFGTMQIVLTPVAA-----GKVKATAHKCDLCAGRENGPACVENCPADALQLVTEQAL 150 (654)
T ss_pred EEecccccCcChhcccCCccCeeecccCCcc-----cceeeecCcCcCCCCCCCCCceeccCCcCcEEEecHHHH
Confidence 3567899999999999999998775432110 12234567899998 9999999999987765433
No 112
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=98.30 E-value=2.2e-07 Score=90.17 Aligned_cols=63 Identities=21% Similarity=0.415 Sum_probs=42.0
Q ss_pred CCCccccccccccchhcccc----ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 120 YPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+..+.++||.|++|+++|-. .+|.+.. |+...... ........|..||.|+++||+|||..++
T Consensus 145 i~~d~~rCI~C~rCvr~c~ev~g~~~l~~~~--rg~~~~i~-~~~~~~~~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 145 VLLDRERCVLCARCTRFSDQIAGDPFIDLQE--RGALQQVG-IYEGEPFQSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred eeecccccccCcHHHHHHHhhcCCcEEEeee--cCCCCEEe-cCCCCCcCccccCCchhhCCcccccccc
Confidence 44678999999999999973 3343332 22222211 1111234688999999999999998663
No 113
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=98.29 E-value=1.9e-07 Score=91.38 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=41.7
Q ss_pred cCCCccccccccccchhcccc----ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 119 RYPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+..+.++||.|++|+++|-. .++.+. .++.... ...+......|.+||+|+++||+|||..+.
T Consensus 143 ~i~~d~~rCi~C~rCVr~c~e~~g~~~l~~~--~~~~~~~-~~~~~~~~~~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 143 FISHEMNRCIACYRCVRYYKDYAGGTDLGVY--GAHDNVY-FGRPEDGTLESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred ceEecCCcCccccHHHHHHHhhcCcceEEEe--ecCceeE-ecCCCCCcccChhhCChHhhCCchhccccc
Confidence 355778999999999999984 333332 1111110 001111234688999999999999998764
No 114
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.29 E-value=2.9e-07 Score=90.39 Aligned_cols=65 Identities=23% Similarity=0.471 Sum_probs=45.0
Q ss_pred Ccccccccc----ccchhccccccc-cchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcccc
Q 027264 122 TGEERCIAC----KLCEAVCPAQAI-TIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYS 190 (226)
Q Consensus 122 ~~~~~Ci~C----g~C~~~CP~~ai-~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~ 190 (226)
.+.++|.+| |.|+.+||.+|+ +++... .+....+....+.|++||.|+.+||+++-..++.|...
T Consensus 883 ~~~~rC~~C~~~C~~C~~vCP~~A~~~i~~~g----~~~~~~~~~~~~~C~~CG~C~~~CP~~~~py~dk~t~f 952 (1019)
T PRK09853 883 QEAARCLECNYVCEKCVDVCPNRANVSIAVPG----FQNRFQIVHLDAMCNECGNCAQFCPWNGKPYKDKITLF 952 (1019)
T ss_pred ccccccCCcccccchhhhhCCcccccccccCC----cccCCceEEcCccCccccchhhhCCCCCCcccccceEE
Confidence 356799999 999999999983 222111 00001222234899999999999999998877766544
No 115
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.29 E-value=2.2e-07 Score=86.91 Aligned_cols=56 Identities=39% Similarity=0.904 Sum_probs=43.8
Q ss_pred Ccccccccc------ccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIAC------KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~C------g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+.++|+.| +.|+.+||.+++....... .+.++.+.|++|+.|+.+||.+||.+..
T Consensus 501 ~~~~rCl~C~~c~~C~~C~~~Cp~~ai~~~~~~~--------~~~i~~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 501 QEAARCLSCGNCFECDNCYGACPQDAIIKLGPGR--------RYHFDYDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred hhcccCcccccccccchhhhhCChhheeeecCCc--------eEEEecccCcChhHHHhhcCcCceEecc
Confidence 346677777 8999999999887643210 2457788999999999999999998754
No 116
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=98.29 E-value=2.2e-07 Score=88.73 Aligned_cols=63 Identities=24% Similarity=0.382 Sum_probs=41.6
Q ss_pred CCCccccccccccchhcccc----ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 120 YPTGEERCIACKLCEAVCPA----QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~----~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+..+.++||.|++|+++|-. .++.+. .|+...... .+.-....|..||.|+++||+|||+.++
T Consensus 140 i~~~~~rCI~C~rCvr~c~ev~g~~~l~~~--~rg~~~~i~-~~~~~~~~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 140 VKTVMTRCIHCTRCVRFATEVAGVPELGAI--GRGEDMEIT-TYLEQALTSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred EEEecccCCcccHHHHHHHhhcCCceEEee--ecCCCCEEc-cCCCCCccccccccHHhhCCCccccccc
Confidence 44678999999999999974 333332 232222211 1111233588999999999999998764
No 117
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=98.28 E-value=1.7e-08 Score=84.71 Aligned_cols=109 Identities=21% Similarity=0.392 Sum_probs=55.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhcCCcceecCccccCC--CC-CCccCccccccCCCccccccccccchhccccccccch--
Q 027264 71 SINMLFLTEMVRGLGLTLKYFFDKKVTINYPFEKGP--LS-PRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE-- 145 (226)
Q Consensus 71 ~i~~~~~~~~~~~l~~~~~~~f~~~~~~~~p~~~~~--~~-~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~-- 145 (226)
.+.++..+.++++|.+++..+|++.....-...... .. ................+.|+.||.|..+||+.....+
T Consensus 90 ~iePl~~fpvikDLvvD~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CI~Cg~C~saCP~~~~~~~y~ 169 (244)
T PRK12385 90 KVEALANFPIERDLVVDMTHFIESLEAIKPYIIGNDRTPDDGPNKQTPAQMAKYHQFSGCINCGLCYAACPQFGLNPEFI 169 (244)
T ss_pred EEeeCCCCCeeeeCeeecHHHHHHHHHhcCeeeCCCCCCCcccccCCHHHHHHHHHHHhcCcCccccCcCcCcccCCCCC
Confidence 344556677888888888777764333221100000 00 0011111000011235689999999999998432111
Q ss_pred ------------hhhhccCCccccc---cccCCCCCCcchhhhhcCccc
Q 027264 146 ------------AEEREDGSRRTTR---YDIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 146 ------------~~~~~~~~~~~~~---~~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
.+.+......... .....+.|+.||.|..+||.+
T Consensus 170 GP~~l~~a~r~~~d~rd~~~~~rl~~~~~~~gl~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 170 GPAAITLAHRYNLDSRDHGKKERMKQLNGQNGVWSCTFVGYCSEVCPKH 218 (244)
T ss_pred CHHHHHHHHHHhhcCCccchHHHHHhhcccchhhhCcCcccccccCCCC
Confidence 0111111111001 113446899999999999997
No 118
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=98.28 E-value=2.9e-07 Score=65.74 Aligned_cols=42 Identities=24% Similarity=0.473 Sum_probs=35.6
Q ss_pred ccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 131 KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 131 g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
..|+.+||++|+..+... .+.++.+.|++||.|+.+||.+++
T Consensus 37 k~C~~aCPagA~~~~e~G---------~V~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 37 ELLVKACPAGLYKKQDDG---------SVRFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred hHHHHHCCHhhcEeCCCC---------CEEEcCCCCCcchhhhhhcCCCCc
Confidence 689999999999764322 467888999999999999999986
No 119
>PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=98.26 E-value=1.7e-07 Score=49.86 Aligned_cols=22 Identities=41% Similarity=0.937 Sum_probs=19.6
Q ss_pred CCccccccccccchhccccccc
Q 027264 121 PTGEERCIACKLCEAVCPAQAI 142 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai 142 (226)
.++.++|++||.|+.+||.+||
T Consensus 3 ~id~~~C~~Cg~C~~~Cp~~ai 24 (24)
T PF12837_consen 3 VIDPDKCIGCGDCVRVCPEGAI 24 (24)
T ss_pred EEChhhCcChhHHHHhcchhcC
Confidence 3678999999999999999875
No 120
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=98.26 E-value=3.2e-08 Score=86.64 Aligned_cols=109 Identities=19% Similarity=0.437 Sum_probs=57.0
Q ss_pred HHHhhhHHHHHHHHHHHHHhcCCcceec-CccccCC--CCCCccCccccccCCCccccccccccchhccccccccchh--
Q 027264 72 INMLFLTEMVRGLGLTLKYFFDKKVTIN-YPFEKGP--LSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIEA-- 146 (226)
Q Consensus 72 i~~~~~~~~~~~l~~~~~~~f~~~~~~~-~p~~~~~--~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~-- 146 (226)
+.|+..+.++++|.+++..|++...... |-..... ....+...+...........|+.||.|..+||+.....+.
T Consensus 96 iePl~~~pvikDLvVD~~~~~~k~~~v~p~~~~~~~~~~~~e~~~~p~~~~~~~~~~~Ci~CG~C~s~CP~~~~~~~f~G 175 (329)
T PRK12577 96 IAPLGNMPVIKDLVVDMSSFWQNLEAVDPYVSTAARQVPEREFLQTPEERSKLDQTGNCILCGACYSECNAREVNPEFVG 175 (329)
T ss_pred EEECCCCCccccceeccHHHHHHHHhccCccccCCCCCCcccccCCHHHHHHHHHhhhCcccCcccccCCCCCcCcCcCC
Confidence 4455566789999999988886443322 1110100 0111211111111112246799999999999975332110
Q ss_pred ------------hhhccCCccccc-c---ccCCCCCCcchhhhhcCcccc
Q 027264 147 ------------EEREDGSRRTTR-Y---DIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 147 ------------~~~~~~~~~~~~-~---~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
+.+......... + ....+.|+.|+.|..+||.+.
T Consensus 176 P~~~~~a~r~~~d~rd~~~~~~l~~~~~~~~giw~C~~C~~C~~~CPk~I 225 (329)
T PRK12577 176 PHALAKAQRMVADSRDTATEQRLELYNQGTAGVWGCTRCYYCNSVCPMEV 225 (329)
T ss_pred HHHHHHHHHHhhCCcchhHHHHHHHHhcCCCccccCcChhhhhhhCCCCC
Confidence 000000000001 1 112578999999999999984
No 121
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=98.25 E-value=3.5e-07 Score=80.31 Aligned_cols=50 Identities=30% Similarity=0.690 Sum_probs=40.0
Q ss_pred ccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccc
Q 027264 127 CIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 127 Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
|.+|+.|+.+||++||...... . ...+.+|...|++||.|+.+||.+|+.
T Consensus 183 ~c~~~~Cv~~CP~~Ai~~~~~~-~-----~~~~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 183 VCEIPSVVAACPTGALKPRRDG-K-----NKSLEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred hcCCCceEeeCchhhceecccC-C-----CCceeeccccCCcCCchHHhCchhhcc
Confidence 5567999999999999874221 1 114678899999999999999999986
No 122
>COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion]
Probab=98.24 E-value=2.3e-07 Score=72.78 Aligned_cols=61 Identities=33% Similarity=0.609 Sum_probs=41.2
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcc---hhhhhcCcccccccCCC
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC---GFCQEACPVDAIVEGPN 186 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~C---g~Cv~~CP~~Ai~~~~~ 186 (226)
.++.++|++||.|+.+||.++|.+... .. .. ....+.-+.|.+- .+|+.+||++|+.+.+.
T Consensus 78 ~V~~ekCiGC~~C~~aCPfGai~~~~~-~~-~~---~~~a~KCdlC~~~e~gpaCVe~CP~~AL~lv~~ 141 (165)
T COG1142 78 QVDEEKCIGCKLCVVACPFGAITMVSY-PV-AA---KAVAVKCDLCAGREVGPACVEACPTEALELVDE 141 (165)
T ss_pred EEchhhccCcchhhhcCCcceEEEEee-cC-cc---hhhhhhcccccCccCCCceeeeCCHHHhhcccH
Confidence 367899999999999999999988654 11 00 0111111224332 46999999999986653
No 123
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=98.24 E-value=4e-07 Score=70.42 Aligned_cols=57 Identities=32% Similarity=0.598 Sum_probs=34.0
Q ss_pred ccccccccchhcccccccc-ch--hhhhc--cCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 125 ERCIACKLCEAVCPAQAIT-IE--AEERE--DGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~-~~--~~~~~--~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
+.|+.||.|..+||+.... +. ...+. .+.+.........+.|+.||.|..+||.+..
T Consensus 2 ~~Ci~CG~C~~~CP~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~C~~Cg~C~~~CP~~i~ 63 (144)
T TIGR03290 2 KACYQCGTCTGSCPSGRRTSYRTRLIIRKALLGLKDEVISDDDLWMCTTCYTCQERCPRDVK 63 (144)
T ss_pred ccccCCCCCcCcCCCccccCCCHHHHHHHHHccchhhhccCCCCCcCcCcCchhhhcCCCCC
Confidence 5799999999999975211 00 00000 0100000011245689999999999999843
No 124
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=98.22 E-value=4.6e-07 Score=82.25 Aligned_cols=57 Identities=26% Similarity=0.631 Sum_probs=38.0
Q ss_pred ccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccc
Q 027264 123 GEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
..+.|+.||.|+.+||++.+...........+.......+...|+.||.|..+||.+
T Consensus 361 ~~~~Ci~Cg~C~~vCP~~l~p~~l~~~~~~~~~~~~~~~~~~~C~~Cg~C~~vCP~~ 417 (435)
T TIGR01945 361 PEKPCIRCGKCVQVCPMNLLPQQLNWLALADEFDEAEEHNLMDCIECGCCSYVCPSN 417 (435)
T ss_pred cCCcCcCccchhhhCccchhhHHHHHHhhhcccchhhcCCCCcCCcCCCcccccCCC
Confidence 457899999999999997554322110001111112245667899999999999998
No 125
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=98.19 E-value=5.8e-07 Score=84.66 Aligned_cols=50 Identities=42% Similarity=0.905 Sum_probs=38.3
Q ss_pred cCCCccccccccccchh--ccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 119 RYPTGEERCIACKLCEA--VCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.+.++.++|++|+.|.+ .||... .... ...++. .|+.||.|+.+||.+||
T Consensus 544 ~~~id~~~C~~C~~C~~~~~CP~~~--~~~~----------~~~i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 544 PYKVDQDKCIGCKKCIKELGCPAIE--PEDK----------EAVIDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred eEEEcCCcCCCccccccccCCCCcc--ccCC----------cceeCC-CCcCHHHHHhhCccccC
Confidence 45577889999999999 999532 2111 234555 79999999999999986
No 126
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.16 E-value=8.1e-07 Score=84.40 Aligned_cols=50 Identities=32% Similarity=0.738 Sum_probs=26.2
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcch-------hhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCG-------FCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg-------~Cv~~CP~~Ai~~~~ 185 (226)
++.++|++|+.|+.+||.+++..... ....|..|+ .|+.+||++||.+.+
T Consensus 82 ~d~~~C~gC~~C~~~CP~~ai~~~~~--------------~~~kC~~C~~~~~~~~~Cv~~CP~~Ai~~~~ 138 (639)
T PRK12809 82 LDEQKCIGCKRCAIACPFGVVEMVDT--------------IAQKCDLCNQRSSGTQACIEVCPTQALRLMD 138 (639)
T ss_pred cChhhCcchhhHhhhcCCCCEEccCC--------------CcccccCCcccCCCCChhhhhCccceEEEec
Confidence 44555555555555555555543221 123455554 466666666666544
No 127
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=98.15 E-value=4.9e-08 Score=81.41 Aligned_cols=109 Identities=19% Similarity=0.321 Sum_probs=55.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhcCCcceec-CccccCC-CCCCccCccccccCCCccccccccccchhccccccccch---
Q 027264 71 SINMLFLTEMVRGLGLTLKYFFDKKVTIN-YPFEKGP-LSPRFRGEHALRRYPTGEERCIACKLCEAVCPAQAITIE--- 145 (226)
Q Consensus 71 ~i~~~~~~~~~~~l~~~~~~~f~~~~~~~-~p~~~~~-~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~--- 145 (226)
.+.++..+.++++|.++...+|++..... |...... ....................|+.||.|..+||+.....+
T Consensus 85 tiepl~~~~vikDLvvD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ci~Cg~C~~~CP~~~~~~~~~~ 164 (232)
T PRK05950 85 VIRPLPGLPVIKDLVVDMTQFYAQYRSIKPYLINDTPPPARERLQSPEDREKLDGLYECILCACCSTSCPSFWWNPDKFL 164 (232)
T ss_pred EEEECCCCCeeeeceeehHHHHHHHHhccCeecCCCCCCchhccCCHHHHHHHHhHHhccccccccccCCccccCCCCCC
Confidence 34455556778888888888776433322 1110010 111111111111111245689999999999997532211
Q ss_pred -hhhhc-------cCC----ccccc-c--ccCCCCCCcchhhhhcCccc
Q 027264 146 -AEERE-------DGS----RRTTR-Y--DIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 146 -~~~~~-------~~~----~~~~~-~--~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
+.... .+. ..... . ....+.|+.||.|..+||.+
T Consensus 165 gp~~l~~~~r~~~d~rd~~~~~~~~~~~~~~~i~~C~~Cg~C~~~CP~g 213 (232)
T PRK05950 165 GPAALLQAYRFIADSRDEATGERLDILDDPFGVFRCHTIMNCVEVCPKG 213 (232)
T ss_pred CHHHHHHHHHHhhCCccchhHHHHHHhhcccccccCcCcCCcCccccCC
Confidence 10000 000 00000 1 11357899999999999997
No 128
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=98.10 E-value=7.7e-07 Score=84.17 Aligned_cols=72 Identities=29% Similarity=0.529 Sum_probs=43.8
Q ss_pred Cccccccccccchhccccccccchh--hhhccCCccccccccCCCCCCcchhhhhcCcccccccCCCcccchhcHH
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEA--EEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETHE 195 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~--~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~ 195 (226)
.+.++||.|++|+++|-.-+-.... ..|+...... .+......=..||+|+.+||+|||+.++. ++....++
T Consensus 141 ~dm~RCI~C~RCVR~c~eiaG~~~l~~~~rg~~~~i~-t~~~~~l~se~cGncv~vCPvGALt~K~~-~~~ar~wE 214 (693)
T COG1034 141 YDMNRCILCTRCVRFCKEIAGTHELGVIKRGENSEIG-TYLDQPLESELCGNCVDVCPVGALTSKPF-AFTARKWE 214 (693)
T ss_pred cccccceechhhHHhhhhhcCccccceeecCCCceee-cccccccccccccceeeeccccccccChH-Hhhhccch
Confidence 6789999999999999964322222 1122211111 11111112278999999999999997774 55444443
No 129
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.10 E-value=1.2e-06 Score=83.41 Aligned_cols=52 Identities=29% Similarity=0.633 Sum_probs=43.6
Q ss_pred ccccccccc--chhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 124 EERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 124 ~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...|+.|+. |+.+||+++|..... .+.++.+.|++|+.|+.+||++||.+..
T Consensus 53 ~~~C~~C~~~~C~~~CP~~ai~~~~~----------~~~id~~~C~~C~~C~~~CP~~ai~~~~ 106 (654)
T PRK12769 53 AVTCHHCEDAPCARSCPNGAISHVDD----------SIQVNQQKCIGCKSCVVACPFGTMQIVL 106 (654)
T ss_pred CccCCCCCChhHhhhCCccceeccCC----------eEEEecccccCcChhcccCCccCeeecc
Confidence 568999986 999999999876432 3467888999999999999999997654
No 130
>PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1DUR_A 1H98_A 1BD6_A 1BQX_A 1BWE_A 1BC6_A 3BK7_A 1FCA_A 1FDN_A 2FDN_A ....
Probab=98.07 E-value=7.3e-07 Score=47.52 Aligned_cols=22 Identities=41% Similarity=0.982 Sum_probs=18.7
Q ss_pred Cccccccccccchhcccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAIT 143 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~ 143 (226)
++.++|++||.|+.+||.+||.
T Consensus 3 id~~~C~~Cg~C~~~CP~~ai~ 24 (24)
T PF00037_consen 3 IDPDKCIGCGRCVEACPFDAIT 24 (24)
T ss_dssp EETTTSSS-THHHHHSTTSSEE
T ss_pred EchHHCCCcchhhhhcccccCC
Confidence 5678999999999999999874
No 131
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.06 E-value=1.2e-06 Score=83.30 Aligned_cols=54 Identities=30% Similarity=0.696 Sum_probs=44.7
Q ss_pred cccccccccc--chhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 123 GEERCIACKL--CEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 123 ~~~~Ci~Cg~--C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
....|..|+. |+.+||++++..... ...++.+.|++|+.|+.+||++||.+...
T Consensus 52 ~~~~C~~C~~~~C~~~CP~~ai~~~~~----------~v~~d~~~C~gC~~C~~~CP~~ai~~~~~ 107 (639)
T PRK12809 52 NPVACHHCNNAPCVTACPVNALTFQSD----------SVQLDEQKCIGCKRCAIACPFGVVEMVDT 107 (639)
T ss_pred cCCCCcCcCChhHHhhCCcCceecccc----------ceecChhhCcchhhHhhhcCCCCEEccCC
Confidence 4678999996 999999999976432 34577789999999999999999976543
No 132
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=98.06 E-value=8.2e-07 Score=58.27 Aligned_cols=54 Identities=26% Similarity=0.649 Sum_probs=24.5
Q ss_pred cccccccchhccccccccchhhhhc-----cCCccccccccCCCCCCcchhhhhcCccc
Q 027264 126 RCIACKLCEAVCPAQAITIEAEERE-----DGSRRTTRYDIDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~~~~~-----~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~ 179 (226)
+|+.||.|..+||++.......... .+...........+.|+.||.|..+||.+
T Consensus 1 ~C~~Cg~C~~~CP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 1 ACTQCGYCVPACPSYIATPDEPRSPMRAIYLGKIDEISESHAASLCIGCGLCESVCPQG 59 (61)
T ss_dssp T----STTGGGSHHHHHCTTTHHHHHHHHHHCHCHTTHHHTTTTT--S--HHHHH-TT-
T ss_pred CCCCCCcCcccCCCccccCccHHHHHHHHHHhcchhhhhCcccccCcCcCcCcccccCC
Confidence 5999999999999865422111100 00000001124567899999999999987
No 133
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=98.02 E-value=1.6e-06 Score=78.32 Aligned_cols=43 Identities=40% Similarity=0.920 Sum_probs=33.1
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
.++|++|+.|+++||++ +..... ....|+.|+.|+++||. ++.
T Consensus 230 ~~~Ci~C~~Cv~vCP~g-i~~~~~--------------~~~~Ci~Cg~CidaCp~-a~~ 272 (434)
T TIGR02745 230 LGDCIDCNLCVQVCPTG-IDIRDG--------------LQLECINCGLCIDACDD-VME 272 (434)
T ss_pred CCCCCChhhhHHhCCCC-CEeCCC--------------CchhChhhhHHHHhCCC-hHH
Confidence 46899999999999998 332211 12579999999999998 553
No 134
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.01 E-value=1.4e-06 Score=78.05 Aligned_cols=55 Identities=35% Similarity=0.747 Sum_probs=39.2
Q ss_pred Ccccccc--cc-ccchhcccc-----ccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC
Q 027264 122 TGEERCI--AC-KLCEAVCPA-----QAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 122 ~~~~~Ci--~C-g~C~~~CP~-----~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
++.|+|- .| ..|.+.||. .+|.+++.. ....|....|++||.|++.||++||..-
T Consensus 8 vd~D~C~PkkC~~eC~~yCP~vrtg~~~I~i~~~~--------gkpvIsE~lCiGCGICvkkCPF~AI~Iv 70 (591)
T COG1245 8 VDYDRCQPKKCGYECIKYCPVVRTGKETIEIDEDT--------GKPVISEELCIGCGICVKKCPFDAISIV 70 (591)
T ss_pred eehhccCccccchhhhhcCCCccCCCeeEEecCCC--------CCceeEhhhhccchhhhccCCcceEEEe
Confidence 4556674 45 589999996 244444321 1335666789999999999999999743
No 135
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=97.97 E-value=2.1e-06 Score=81.69 Aligned_cols=58 Identities=21% Similarity=0.583 Sum_probs=35.9
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
...++|++||.|+.+||.... ...............+....+.|++||.|+.+||.+.
T Consensus 396 ~~~~kCI~CG~Cv~aCP~~l~-i~e~i~~a~~G~l~~l~~~~d~C~~CG~C~evCP~gI 453 (784)
T TIGR00314 396 ELANKCTQCGNCVRTCPNSLR-VDEAMAHAQKGDLSKLEQLEEQCYACGRCEQACPKNI 453 (784)
T ss_pred hhcccCCCcccchhhCCCCcc-hHHHHHHHhcCCccccccCHhhhhhhhHHhccCCCCC
Confidence 346899999999999998632 1111000000000112223468999999999999983
No 136
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=97.93 E-value=2.6e-06 Score=81.11 Aligned_cols=58 Identities=29% Similarity=0.651 Sum_probs=36.7
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
...++|++||.|+.+||++.......... ............+.|++||.|..+||++.
T Consensus 401 ~eadrCI~CG~Cv~aCP~~l~i~~~I~~a-~~G~~~~l~~l~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 401 ELAKKCTECGWCVRVCPNELPIPEAMEAA-AKGDLSKLEDLYDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred HhhhhCcCCCCccccCCCCcchhHHHHHH-hcCChhhhhhhhhhccchhHHhhhCCCCC
Confidence 34689999999999999863211110000 00000012334578999999999999984
No 137
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=97.93 E-value=4.2e-06 Score=71.75 Aligned_cols=58 Identities=26% Similarity=0.515 Sum_probs=37.3
Q ss_pred cccccccccchhccccccccchhh--hh---c--c---CCccccccccCCCCCC-cchhhhhcCccccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAE--ER---E--D---GSRRTTRYDIDMTKCI-YCGFCQEACPVDAI 181 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~--~~---~--~---~~~~~~~~~~d~~~C~-~Cg~Cv~~CP~~Ai 181 (226)
.+.|..|+.|+.+||++||..... .. . . .......+..+...|+ +|+.|+.+||.+..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~~~~~d~~~C~sy~ti~~~~~~~~~~~~~~~~~~~gCd~Cq~vCP~n~~ 226 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVEPEFVDAPRCISYLTIEKDAALPKEFASNCGGRSYGCDICQEVCPWNKK 226 (282)
T ss_pred CCCCccHHHHHHhcCcccccCCCccCHHHHHHHhcccCCCcCCHHHHHHhcCcccCCCCccccCCCCCC
Confidence 568999999999999999863110 00 0 0 0001112223345686 79999999999964
No 138
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=97.90 E-value=2.2e-06 Score=81.43 Aligned_cols=58 Identities=24% Similarity=0.586 Sum_probs=36.3
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
...++|+.||.|..+||++.............. ...+....+.|+.||.|..+||+++
T Consensus 362 ~~~~kCI~CG~Cv~aCP~~l~i~e~i~~~~~G~-~~~l~~~~~~Ct~CG~C~evCP~gI 419 (731)
T cd01916 362 ELAAKCTDCGWCTRACPNSLRIKEAMEAAKEGD-FSGLADLFDQCVGCGRCEQECPKEI 419 (731)
T ss_pred HhhhcCCCCCcccccCCCCCcHHHHHHHHhcCC-hhhhhhhHhhhhhhhHHhhhCCCCC
Confidence 446899999999999998632111000000000 0011223478999999999999996
No 139
>PRK13409 putative ATPase RIL; Provisional
Probab=97.89 E-value=2.9e-06 Score=79.81 Aligned_cols=54 Identities=35% Similarity=0.796 Sum_probs=38.9
Q ss_pred Ccccccc--ccc-cchhccccc-----cccchhhhhccCCccccccccCCCCCCcchhhhhcCccccccc
Q 027264 122 TGEERCI--ACK-LCEAVCPAQ-----AITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 122 ~~~~~Ci--~Cg-~C~~~CP~~-----ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
++.|+|- .|+ .|.+.||.. +|.++... ....+..+.|++||.|++.||++||..
T Consensus 7 ~~~~~c~~~~c~~~c~~~cp~~~~~~~~~~~~~~~--------~~~~~~e~~c~~c~~c~~~cp~~a~~i 68 (590)
T PRK13409 7 VDYDRCQPKKCNYECIKYCPVVRTGEETIEIDEDD--------GKPVISEELCIGCGICVKKCPFDAISI 68 (590)
T ss_pred eeccccCcchhhhhHHhhCCCcccCCeEEEEcCCC--------CCceeeHhhccccccccccCCcceEEE
Confidence 4567775 675 799999963 33332211 145677789999999999999999973
No 140
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=97.86 E-value=1.1e-05 Score=70.26 Aligned_cols=55 Identities=29% Similarity=0.723 Sum_probs=35.6
Q ss_pred ccccccccchhccccccccchhhh-hcc-----C----CccccccccCCC-----CCC-----cchhhhhcCccc
Q 027264 125 ERCIACKLCEAVCPAQAITIEAEE-RED-----G----SRRTTRYDIDMT-----KCI-----YCGFCQEACPVD 179 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~~~~~~-~~~-----~----~~~~~~~~~d~~-----~C~-----~Cg~Cv~~CP~~ 179 (226)
+.|..|++|+++||++||..+... -+. . .+......++.+ .|. .|+.|+.+||++
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~~~~~psw~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~C~~C~~~CPf~ 279 (314)
T TIGR02486 205 KFCETCGKCADECPSGAISKGGEPTWDPEDSNGDPPGENNPGLKWQYDGWRCLLFRCYNEGGGGCGVCQAVCPFN 279 (314)
T ss_pred ccCcchhHHHhhCCccccCCCCCCcccccccccccccccCCCcccccchhhcccccccCCCCCCCCCCeeECCCC
Confidence 579999999999999999875332 000 0 000011223333 354 599999999998
No 141
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.86 E-value=4.8e-06 Score=39.16 Aligned_cols=15 Identities=53% Similarity=1.287 Sum_probs=10.3
Q ss_pred CCcchhhhhcCcccc
Q 027264 166 CIYCGFCQEACPVDA 180 (226)
Q Consensus 166 C~~Cg~Cv~~CP~~A 180 (226)
|++|+.|+++||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 566777777777665
No 142
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=97.86 E-value=5.6e-06 Score=74.12 Aligned_cols=57 Identities=30% Similarity=0.735 Sum_probs=36.5
Q ss_pred cccccccccchhccccccccchhh--hhc--cCCcc----ccccccCCCCCCcchhhhhcCcccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAE--ERE--DGSRR----TTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~--~~~--~~~~~----~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
.++|+.||.|..+||+........ ... .+.+. ........+.|+.|+.|..+||.+.
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i 70 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVNPLYPGPKQAGPDGERLRLKDGALYDESLKYCSNCKRCEVACPSGV 70 (396)
T ss_pred hhhcCCCCCCCccCCCcccCCCCCChhhhccHHHHHhccchhhcCCCCCcCcCcCccCcccCCCC
Confidence 468999999999999975532100 000 00000 0112234578999999999999985
No 143
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=97.77 E-value=9.3e-06 Score=73.54 Aligned_cols=59 Identities=25% Similarity=0.402 Sum_probs=35.0
Q ss_pred Cccccccccccchhccccccccch------h-hhhccCC----ccccccccCCCCCCcchhhhhcCcccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIE------A-EEREDGS----RRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~------~-~~~~~~~----~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
.+..+|+.||.|..+||+....-. . ..++... .....+......|..||.|..+||++.
T Consensus 290 ~e~~~CIrCG~C~~~CPvy~~~g~~~~~~~~~Gp~G~v~~~~~~g~~~~~~~~~~C~~Cg~C~~vCP~gI 359 (432)
T TIGR00273 290 REVLACIRCGACQNECPVYRHIGGHWYGSIYPGPIGAVWSPLLGGYTDYKHLPYLSSLCGACREVCPVKI 359 (432)
T ss_pred hhHhhCCCCCCccccCcchhccCccccccccCChHHHHHHHHhcccccccccCccchhhhhhhccCCCCC
Confidence 346799999999999997532110 0 0000000 000011112368999999999999984
No 144
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=97.71 E-value=4.7e-06 Score=82.80 Aligned_cols=53 Identities=26% Similarity=0.431 Sum_probs=38.5
Q ss_pred cCCCccccccccccchh--ccccccccchhhhhccCCccccccccCCCCCCcchhhhh-cCccc
Q 027264 119 RYPTGEERCIACKLCEA--VCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQE-ACPVD 179 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~-~CP~~ 179 (226)
++.++.+.|.+||.|.. .||+ |...+.. .++ +..||...|.+|+.|++ .||.-
T Consensus 637 r~~In~~vCegCgdC~~~s~C~a--i~p~~t~--~gr----K~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 637 RVFINEAVCEGCGDCSVKSNCLS--VEPVETE--FGR----KRRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred eEEEcccccCCchhhhhccCCcc--eeecccc--CCc----cEEECHhHCCCccccccCCCCCc
Confidence 35578899999999976 6985 3332211 111 24688899999999999 99975
No 145
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=97.71 E-value=9.5e-06 Score=73.65 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=38.0
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCc--chhhhhcCccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIY--CGFCQEACPVD 179 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~--Cg~Cv~~CP~~ 179 (226)
...||.||.|+++||++.+...-............-..+...|+. ||.|..+||.+
T Consensus 372 ~~aCI~CG~C~~vCPm~L~P~~L~~a~~~~d~d~a~~lg~~ecieedCG~CsyVCPSk 429 (447)
T TIGR01936 372 ERAMIPIGIYERVMPLDIPPTLLLKALIAGDFDKAQRLGALEVDEEDFALCTFVDPSK 429 (447)
T ss_pred ccceeECChHhhcCCCCCCHHHHHHHHHcCCHHHHHHCCCcccCccccccCceECCCC
Confidence 456999999999999986654332211111111122345678998 99999999988
No 146
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=97.68 E-value=1.5e-05 Score=71.42 Aligned_cols=57 Identities=33% Similarity=0.744 Sum_probs=35.3
Q ss_pred cccccccccchhccccccccchhh--hhc--cCCcc----ccccccCCCCCCcchhhhhcCcccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAE--ERE--DGSRR----TTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~--~~~--~~~~~----~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
.++|+.||.|..+||+........ ... .+.+. ...+....+.|..|+.|..+||.+.
T Consensus 4 ~~~Ci~Cg~C~~~Cp~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~C~~C~~~CP~~i 68 (397)
T TIGR03379 4 FESCIKCTVCTVYCPVAKANPLYPGPKQAGPDGERLRLKSAELYDEALKYCTNCKRCEVACPSDV 68 (397)
T ss_pred hhhCCCCCCCcccCcCccccCCccCcccCCcHHHHHhcccchhcccccccCcCcCccchhcCCCC
Confidence 468999999999999864321100 000 00000 0011123578999999999999984
No 147
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=97.68 E-value=8.4e-06 Score=73.34 Aligned_cols=57 Identities=25% Similarity=0.726 Sum_probs=34.8
Q ss_pred cccccccccchhccccccccc----hhhhhcc-------CCccccccccCCCCCCcchhhhhcCcccc
Q 027264 124 EERCIACKLCEAVCPAQAITI----EAEERED-------GSRRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~----~~~~~~~-------~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
.+.|++||.|..+||+....- .+..+.. +...........+.|+.|+.|..+||.+.
T Consensus 22 ~~~C~~Cg~C~~~CP~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~v 89 (407)
T PRK11274 22 LRKCVHCGFCTATCPTYQLLGDELDGPRGRIYLIKQVLEGAEVTEKTQLHLDRCLTCRNCETTCPSGV 89 (407)
T ss_pred HHhCccCCCccccCCcccccCCcccChhHHHHHHHHHhccCccchhhccccccCccccchhhhCCCCC
Confidence 468999999999999753321 1111110 00000011122568999999999999983
No 148
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=97.66 E-value=1.2e-05 Score=73.97 Aligned_cols=59 Identities=31% Similarity=0.789 Sum_probs=35.8
Q ss_pred Cccccccccccchhccccccccchh-------------hhhccCCccccccccCCCCCCcchhhhhcCcccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEA-------------EEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~-------------~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
...+.|+.||.|..+||+....--. ..+....+.........+.|+.||.|..+||.+.
T Consensus 130 ~~~~~Ci~CG~C~~~CP~~~~~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~gi 201 (486)
T PRK06259 130 KKLRGCIECLSCVSTCPARKVSDYPGPTFMRQLARFAFDPRDEGDREKEAFDEGLYNCTTCGKCVEVCPKEI 201 (486)
T ss_pred hCchhcccCccccccCCCCccccCcCHHHHHHHHHHhhCCcchhhHHHHHhcCCCcCCCCcCcccCcCCCCC
Confidence 3457899999999999976431000 0000000000111234578999999999999883
No 149
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=97.64 E-value=1.4e-05 Score=72.69 Aligned_cols=59 Identities=12% Similarity=0.076 Sum_probs=38.5
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCc--chhhhhcCccccccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIY--CGFCQEACPVDAIVE 183 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~--Cg~Cv~~CP~~Ai~~ 183 (226)
...|+.||.|+++||.+.....-...............+...|+. ||.|..+||.+ |.+
T Consensus 373 ~~~CI~Cg~C~~vCP~~L~P~~l~ra~~~~d~~~~e~~~~~~C~EedCG~CsyVCPsk-ipL 433 (448)
T PRK05352 373 ERAMVPIGNYERVMPLDILPTQLLRALIVGDTDEAQALGALELDEEDLALCTFVCPGK-YEY 433 (448)
T ss_pred CcceeecCcHhhcCCCCCCHHHHHHHHHcCCHHHHHHcCchhcCccccCCCccCCCCC-chH
Confidence 457999999999999965443221111111111112356678999 99999999998 443
No 150
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=97.63 E-value=1.7e-05 Score=69.24 Aligned_cols=18 Identities=33% Similarity=0.969 Sum_probs=16.0
Q ss_pred CCCCCCcchhhhhcCccc
Q 027264 162 DMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~ 179 (226)
....|++||.|+.+||++
T Consensus 299 G~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEY 316 (334)
T ss_pred CccccCCcCchhhhCCCC
Confidence 345799999999999999
No 151
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.62 E-value=8.3e-06 Score=81.25 Aligned_cols=53 Identities=25% Similarity=0.405 Sum_probs=38.5
Q ss_pred cCCCccccccccccchh--ccccccccchhhhhccCCccccccccCCCCCCcchhhhh-cCccc
Q 027264 119 RYPTGEERCIACKLCEA--VCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQE-ACPVD 179 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~-~CP~~ 179 (226)
++.++.+.|++||.|.. .||+ |...+.. .++ +..||...|.+|+.|++ +||.-
T Consensus 623 ~~~In~~vCegCg~C~~~s~C~a--i~~~~t~--~gr----K~~Id~s~Cn~~~~C~~G~CPsf 678 (1159)
T PRK13030 623 RLFINEAVCEGCGDCGVQSNCLS--VEPVETP--FGR----KRRIDQSSCNKDFSCVNGFCPSF 678 (1159)
T ss_pred eEEEcccccCCchhhhhccCCcc--eeecccc--CCc----cEEECHHHCCCccccccCCCCCC
Confidence 35578899999999976 6884 3332211 111 34688899999999999 99964
No 152
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=97.59 E-value=1.7e-05 Score=63.50 Aligned_cols=56 Identities=25% Similarity=0.570 Sum_probs=36.7
Q ss_pred ccccccccchhccccccccchhhhhcc------CCccccccccCCCCCCcchhhhhcCccccc
Q 027264 125 ERCIACKLCEAVCPAQAITIEAEERED------GSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~~~~~~~~~------~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
..|..||.|..+||++-. .+.+.|.. +.+......-+.|.|+.|..|...||.+..
T Consensus 39 ~~C~QCG~CT~sCPs~r~-t~y~pR~ii~~~~~g~~d~il~~~~lW~C~tCytC~eRCPr~v~ 100 (195)
T COG1150 39 EGCYQCGTCTGSCPSGRF-TDYSPRKIIRKARLGLVDLILSSESLWACVTCYTCTERCPRGVK 100 (195)
T ss_pred hHhhccCcccCCCCCccc-CCCCHHHHHHHHHcccHHHHhcCCcceeeeechhhhhhCCCCCC
Confidence 569999999999999744 22222211 111011122356899999999999998854
No 153
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=97.58 E-value=8.8e-06 Score=72.43 Aligned_cols=58 Identities=28% Similarity=0.667 Sum_probs=37.9
Q ss_pred cccccccccchhcccccccc--chhhhhccCCcc--------ccccccCCCCCCcchhhhhcCccccc
Q 027264 124 EERCIACKLCEAVCPAQAIT--IEAEEREDGSRR--------TTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~--~~~~~~~~~~~~--------~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.++|++||.|..+||+.... .++..+....+. ........+.|+.|++|+..||.+.-
T Consensus 8 ~~~Cv~Cg~C~~~CP~~~~~~~~sPrgr~~~~r~~~~~~~~~~~~~~~~~~~C~~C~~C~~~CP~~i~ 75 (388)
T COG0247 8 LDKCVHCGFCTNVCPSYRATEALSPRGRIVLVREVLRGKAPGDEEVYEALDTCLACGACATACPSGID 75 (388)
T ss_pred HHhcCCCCcccCcCCCccccCCCCCchHHHHHHHHHhCCCcchhhhHHHHHhCcCccchHhhCCCCCc
Confidence 47899999999999987665 222222211110 01111224789999999999999953
No 154
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.57 E-value=2.6e-05 Score=40.23 Aligned_cols=18 Identities=56% Similarity=1.318 Sum_probs=11.0
Q ss_pred ccCCCCCCcchhhhhcCc
Q 027264 160 DIDMTKCIYCGFCQEACP 177 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP 177 (226)
.+|.+.|++|+.|+.+||
T Consensus 4 ~iD~~rCiGC~~C~~AC~ 21 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACP 21 (22)
T ss_pred EEccccccCchhHHHhhC
Confidence 355566666666666665
No 155
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=97.56 E-value=2.1e-05 Score=69.88 Aligned_cols=56 Identities=29% Similarity=0.514 Sum_probs=33.0
Q ss_pred ccccccccchhcccccccc----c-hhhhhccCC---c---cccccccCCCCCCcchhhhhcCcccc
Q 027264 125 ERCIACKLCEAVCPAQAIT----I-EAEEREDGS---R---RTTRYDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~----~-~~~~~~~~~---~---~~~~~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
-.||.||.|..+||+.... . +.-.++-+. - ........+..|+.||.|..+||++.
T Consensus 308 L~CIRCGaC~n~CPvY~~iGgh~y~~~Y~GPiG~v~s~~~~g~~~~~~~~~~c~lcg~C~evCPv~I 374 (459)
T COG1139 308 LRCIRCGACLNHCPVYRHIGGHAYGSIYPGPIGVVWSPILGGYDAAGDLPYACSLCGACTEVCPVKI 374 (459)
T ss_pred HHhhcchHhhhcChhhhhccCeecccccCCcccceecchhcchhhccccchhhccccCCCCcCCCCC
Confidence 4699999999999973110 0 000000000 0 00122233567999999999999993
No 156
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=97.55 E-value=1.7e-05 Score=56.27 Aligned_cols=52 Identities=25% Similarity=0.628 Sum_probs=42.9
Q ss_pred ccccccccc--cchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcc-ccccc
Q 027264 123 GEERCIACK--LCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV-DAIVE 183 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~-~Ai~~ 183 (226)
+.+.|..|. .|+.+||.+.....+.. .+.++.+.|..||.|.-+||. +.+.+
T Consensus 31 ~~~~~~~~~~~~l~~aCPA~~Y~~~~~g---------~l~~~yegClECGTCRvlc~~~~~i~W 85 (99)
T COG2440 31 DPDDCQECEDKPLIKACPAGCYKLIDDG---------KLRFDYEGCLECGTCRVLCPHSGLIQW 85 (99)
T ss_pred CchhhhhccchhhhhcCCHHHeeECCCC---------cEEEeecCeeeccceeEecCCCcceEE
Confidence 357899998 99999999988776633 467788899999999999999 66654
No 157
>PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.51 E-value=2.7e-05 Score=40.19 Aligned_cols=19 Identities=47% Similarity=1.102 Sum_probs=16.8
Q ss_pred CCccccccccccchhcccc
Q 027264 121 PTGEERCIACKLCEAVCPA 139 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~ 139 (226)
.+|.++|++|+.|+.+||.
T Consensus 4 ~iD~~rCiGC~~C~~AC~~ 22 (22)
T PF12797_consen 4 VIDLERCIGCGACEVACPV 22 (22)
T ss_pred EEccccccCchhHHHhhCc
Confidence 3678999999999999984
No 158
>PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=97.50 E-value=2.9e-05 Score=36.46 Aligned_cols=15 Identities=47% Similarity=1.214 Sum_probs=13.8
Q ss_pred ccccccchhcccccc
Q 027264 127 CIACKLCEAVCPAQA 141 (226)
Q Consensus 127 Ci~Cg~C~~~CP~~a 141 (226)
|+.|+.|+.+||++|
T Consensus 1 C~~C~~C~~~Cp~~A 15 (15)
T PF12798_consen 1 CTGCGACVEVCPTGA 15 (15)
T ss_pred CCCchHHHHHhcCCC
Confidence 789999999999975
No 159
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=97.46 E-value=3.1e-05 Score=67.98 Aligned_cols=17 Identities=35% Similarity=1.028 Sum_probs=15.4
Q ss_pred CCCCCcchhhhhcCccc
Q 027264 163 MTKCIYCGFCQEACPVD 179 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~ 179 (226)
...|++||.|..+||++
T Consensus 306 ~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 306 YHMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhhCcCcCccccccCCC
Confidence 35799999999999998
No 160
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=97.40 E-value=2.9e-05 Score=77.32 Aligned_cols=52 Identities=27% Similarity=0.449 Sum_probs=37.7
Q ss_pred cCCCccccccccccchh--ccccccccchhhhhccCCccccccccCCCCCCcchhhhh-cCcc
Q 027264 119 RYPTGEERCIACKLCEA--VCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQE-ACPV 178 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~--~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~-~CP~ 178 (226)
.+.++.+.|.+||.|.. .||+ |...+.. .++ +..||...|.+|+.|++ .||.
T Consensus 651 r~~In~~vCeGCgdC~~~snC~a--i~p~et~--~gr----K~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 651 RVFINELVCEGCGDCSVQSNCLA--VQPVETE--FGR----KRKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred cEEEcccccCCchhhhhccCCce--eeecccc--CCc----cEEECHhHCCCccccccCCCCC
Confidence 34578899999999976 6885 3332211 111 24688889999999999 9998
No 161
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=97.35 E-value=7.8e-05 Score=65.06 Aligned_cols=56 Identities=21% Similarity=0.540 Sum_probs=34.3
Q ss_pred cccccccccchhccccccccchhhhhcc-----CC--c--cccccccCCCCC-CcchhhhhcCccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEERED-----GS--R--RTTRYDIDMTKC-IYCGFCQEACPVD 179 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~-----~~--~--~~~~~~~d~~~C-~~Cg~Cv~~CP~~ 179 (226)
.+.|-.|..|+.+||++|++.....-.. .+ + ...++......+ .+|+.|+.+||.+
T Consensus 184 ~~~Cg~C~~CldaCPt~Al~~~~~~~~~~cis~lt~~~~~~p~e~r~~~~n~iygCd~C~~vCPwn 249 (337)
T COG1600 184 EDHCGSCTRCLDACPTGALVAPYTVDARRCISYLTIEKGGAPEEFRPLIGNRIYGCDICQKVCPWN 249 (337)
T ss_pred CccChhhHHHHhhCCcccccCCCccchhHHhhhhhhhccCCcHHHHHhccCceecCchHHHhCCcc
Confidence 3889999999999999999754321100 00 0 000111111222 2899999999998
No 162
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=97.33 E-value=4.4e-05 Score=69.95 Aligned_cols=56 Identities=23% Similarity=0.604 Sum_probs=35.4
Q ss_pred cccccccccchhccccccccchhhh-hccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEE-REDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~-~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
..+|+.||-|..+||.. +.+.+.. +..... ...+..-.+.|++||.|.++||.+..
T Consensus 399 a~kc~~cG~C~~~CP~~-l~i~eam~~A~~Gd-~~~l~~l~d~C~~C~rCEq~Cpk~ip 455 (772)
T COG1152 399 ARKCTYCGNCMRACPNE-LDIPEAMEYAAKGD-FSKLEDLHDVCIGCGRCEQVCPKNIP 455 (772)
T ss_pred HHhcccccchhccCCcc-cchHHHHHHhhcCC-hHHHHHHHHHhhhhhhhhhhCcccCc
Confidence 47899999999999974 3332221 111000 01112224679999999999999843
No 163
>PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B ....
Probab=97.30 E-value=7.3e-05 Score=48.83 Aligned_cols=23 Identities=48% Similarity=1.155 Sum_probs=16.3
Q ss_pred Cccccccccccchhcccc-ccccc
Q 027264 122 TGEERCIACKLCEAVCPA-QAITI 144 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~-~ai~~ 144 (226)
++.+.|++||.|+.+||+ +||++
T Consensus 36 v~~~~C~GCg~C~~~CPv~~AI~m 59 (59)
T PF14697_consen 36 VNPDKCIGCGLCVKVCPVKDAITM 59 (59)
T ss_dssp CE-TT--S-SCCCCCSSSTTSEEE
T ss_pred eccccCcCcCcccccCCCccCCCC
Confidence 557899999999999997 99863
No 164
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=97.30 E-value=9.2e-05 Score=66.43 Aligned_cols=44 Identities=27% Similarity=0.600 Sum_probs=35.7
Q ss_pred ccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC
Q 027264 131 KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 131 g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
..|+..||++||..+... .+.+|...|+.||.|+++||. |+..+
T Consensus 248 ~~~v~~Cp~~ai~~~~~~---------~~~id~~~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 248 NEVVNRCPTKAISWDGSK---------ELSIDNRECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred hhHhhcCCccccccCCCc---------eEEEcchhcCcCccccccCcc-cccCC
Confidence 349999999999886421 467888999999999999997 66544
No 165
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=97.27 E-value=0.00011 Score=35.74 Aligned_cols=15 Identities=60% Similarity=1.442 Sum_probs=8.5
Q ss_pred ccccccccchhcccc
Q 027264 125 ERCIACKLCEAVCPA 139 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~ 139 (226)
++|++|+.|+.+||+
T Consensus 2 ~~C~~C~~C~~~Cp~ 16 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPT 16 (17)
T ss_dssp CCCTTSSSSTTTSTT
T ss_pred CcCCCCchHHhhccC
Confidence 345566666666654
No 166
>COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion]
Probab=97.24 E-value=9.7e-05 Score=58.66 Aligned_cols=31 Identities=39% Similarity=0.788 Sum_probs=26.0
Q ss_pred cccCCCccccccccccchhccccccccchhh
Q 027264 117 LRRYPTGEERCIACKLCEAVCPAQAITIEAE 147 (226)
Q Consensus 117 ~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~~ 147 (226)
...+.++..+||-||.|+.+||++||..+..
T Consensus 87 ~~~~~In~grCIfCg~C~e~CPt~Al~~t~~ 117 (172)
T COG1143 87 PKRPDINLGRCIFCGLCVEVCPTGALVLTPE 117 (172)
T ss_pred cccceeccccccccCchhhhCchhhhcCCcc
Confidence 3446678899999999999999999987653
No 167
>PRK13984 putative oxidoreductase; Provisional
Probab=97.23 E-value=0.0001 Score=69.67 Aligned_cols=26 Identities=23% Similarity=0.652 Sum_probs=21.7
Q ss_pred CCccccccccccchhccccccccchh
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.++.+.|+.|+.|+.+||++||....
T Consensus 82 ~i~~~~c~~c~~c~~~Cp~~Ai~~~~ 107 (604)
T PRK13984 82 VIDYGRCSFCALCVDICTTGSLKMTR 107 (604)
T ss_pred ccCcccCcCcchHHhhCCcCcEEecc
Confidence 45678899999999999999877643
No 168
>PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional
Probab=97.14 E-value=0.00017 Score=57.87 Aligned_cols=53 Identities=23% Similarity=0.523 Sum_probs=39.9
Q ss_pred cccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 126 RCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+...|.+...+|...+...++-++ ...++.+.|++|+.|+.+||++||.+..
T Consensus 7 ~~~~~g~~T~~yP~~~~~~~~~~rg-------~p~~d~~~C~~C~~Cv~~CP~~ai~~~~ 59 (180)
T PRK12387 7 KVIKTGTATSSYPLEPIAVDKNFRG-------KPEYNPQQCIGCAACVNACPSNALTVET 59 (180)
T ss_pred HHHhcCCccccCCCCCCCCCCCCCC-------ceEEChhhCcChhHHHHhcCccCeEeec
Confidence 3455788888999876665443222 4567888999999999999999997653
No 169
>PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 1BD6_A 1BQX_A 1BWE_A 1BC6_A.
Probab=97.07 E-value=0.00022 Score=34.61 Aligned_cols=16 Identities=44% Similarity=1.294 Sum_probs=13.8
Q ss_pred CCCCcchhhhhcCccc
Q 027264 164 TKCIYCGFCQEACPVD 179 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~ 179 (226)
+.|++|+.|+.+||++
T Consensus 2 ~~C~~C~~C~~~Cp~~ 17 (17)
T PF12800_consen 2 ERCIGCGSCVDVCPTQ 17 (17)
T ss_dssp CCCTTSSSSTTTSTT-
T ss_pred CcCCCCchHHhhccCC
Confidence 4799999999999974
No 170
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=97.05 E-value=0.0002 Score=60.57 Aligned_cols=50 Identities=22% Similarity=0.434 Sum_probs=35.4
Q ss_pred ccccccchhccccccccchhhhhccCCcccccccc-CCCCCCcchhhhhcCccccc
Q 027264 127 CIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDI-DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 127 Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~-d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
-..++.|...||.+++.-..... ...+... |.+.|+.|+.|+++||.+++
T Consensus 168 ~~~r~~C~~~CP~Ga~~~~~~~~-----~~~~i~~~~~~~C~~C~~C~~vCP~~~v 218 (255)
T TIGR02163 168 FSERGWCGHLCPLGAFYGLIGRK-----SLIKIAASDREKCTNCMDCFNVCPEPQV 218 (255)
T ss_pred hcCCchhhCcCCCcchhhhhhcc-----CceEEEeeccccCeEcCCccCcCCCCce
Confidence 45789999999999885322111 1112333 37899999999999999974
No 171
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=97.03 E-value=0.00018 Score=61.39 Aligned_cols=50 Identities=24% Similarity=0.496 Sum_probs=35.9
Q ss_pred cccccchhccccccccchhhhhccCCccccccc-cCCCCCCcchhhhhcCcccccc
Q 027264 128 IACKLCEAVCPAQAITIEAEEREDGSRRTTRYD-IDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 128 i~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~-~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
+..+-|...||.+++.-.... ....+.. +|.+.|++|+.|+++||.+++.
T Consensus 176 ~~r~wC~~lCP~Ga~~~~~~~-----~~~~~i~~~d~~~C~~C~~C~~~CP~~~i~ 226 (271)
T PRK09477 176 VEHGWCGHLCPLGAFYGLIGK-----KSLIRVKAHDRQKCTRCMDCFHVCPEPQVL 226 (271)
T ss_pred cCCchhhccCCHHHHHHhccc-----ccccccccCCcccCcccCCcCCcCCCccee
Confidence 457899999999987532211 1111334 6778999999999999998754
No 172
>PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J.
Probab=97.01 E-value=0.00022 Score=45.48 Aligned_cols=20 Identities=45% Similarity=1.104 Sum_probs=15.1
Q ss_pred ccccccccccchhccccccc
Q 027264 123 GEERCIACKLCEAVCPAQAI 142 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai 142 (226)
+.++|++||.|+.+||++||
T Consensus 36 ~~~~C~~Cg~C~~~CP~~AI 55 (55)
T PF13187_consen 36 NAEKCIGCGACVKACPTGAI 55 (55)
T ss_dssp TGGG--TTCHHHHHSTTT-E
T ss_pred CCCccccHhHHHHHcchhhC
Confidence 45689999999999999986
No 173
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=96.98 E-value=0.00016 Score=63.74 Aligned_cols=52 Identities=21% Similarity=0.429 Sum_probs=34.5
Q ss_pred cccccccccchhccccc-cccchhhhhccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 124 EERCIACKLCEAVCPAQ-AITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~-ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.+.|..|+.|...||+- ++. . +.... ...+..-.+.|..||.|...||..+.
T Consensus 13 l~iC~~C~~C~~~CpvfPa~~--~--~~~~~--~~d~~~la~lChnC~~C~~~CPy~pP 65 (372)
T TIGR02484 13 LNLCNSCGYCTGLCAVFPAAQ--G--RPDLT--RGDLRHLAHLCHDCQSCWHDCQYAPP 65 (372)
T ss_pred hHhCcCcCCccccCCCccccc--c--ccccC--HHHHHHHHHHCcCcccccccCcCCCC
Confidence 47899999999999974 111 1 11000 11122224679999999999999764
No 174
>PF13484 Fer4_16: 4Fe-4S double cluster binding domain
Probab=96.96 E-value=0.00028 Score=46.93 Aligned_cols=21 Identities=52% Similarity=1.026 Sum_probs=19.0
Q ss_pred CCCcchhhhhcCcccccccCC
Q 027264 165 KCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 165 ~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.|..|+.|+++||++||..+.
T Consensus 1 ~C~~C~~C~~~CP~~AI~~~~ 21 (67)
T PF13484_consen 1 FCITCGKCAEACPTGAISGED 21 (67)
T ss_pred CCcchhHHHHhCcHhhccCCC
Confidence 389999999999999999873
No 175
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=96.82 E-value=0.00026 Score=47.42 Aligned_cols=61 Identities=25% Similarity=0.326 Sum_probs=32.8
Q ss_pred CccccccccccchhccccccccchhhhhccC-CccccccccCCCCCCcchhhhhcCccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDG-SRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~-~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
++.++||+||.|..+||.- +.+.+...... ........+..+.=.....-+..||++||++
T Consensus 5 vDrd~Cigcg~C~~~aPdv-F~~~d~G~a~~~~~~~~~~~~~~e~~~~~~~A~~~CP~~aI~v 66 (68)
T COG1141 5 VDRDTCIGCGACLAVAPDV-FDYDDEGIAFVLDGNIGEGEVPEELEEDAEDAAEACPTDAIKV 66 (68)
T ss_pred echhhccccchhhhcCCcc-eeeCCCcceEeccCccccccCChHHHHHHHHHHHhCCccceEe
Confidence 5678999999999999962 22222211100 0000011111111111246789999999975
No 176
>KOG3256 consensus NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit [Energy production and conversion]
Probab=96.82 E-value=0.00047 Score=53.69 Aligned_cols=32 Identities=31% Similarity=0.757 Sum_probs=26.9
Q ss_pred cccccCCCccccccccccchhccccccccchh
Q 027264 115 HALRRYPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 115 ~~~~~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.....+.+|..+||-||.|.++||+++|...+
T Consensus 140 rRttrYdIDmtkCIyCG~CqEaCPvdaivegp 171 (212)
T KOG3256|consen 140 RRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171 (212)
T ss_pred ccceeecccceeeeeecchhhhCCccceeccC
Confidence 34556778889999999999999999998654
No 177
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=96.79 E-value=0.00042 Score=45.06 Aligned_cols=52 Identities=23% Similarity=0.517 Sum_probs=25.6
Q ss_pred ccccccccccchhccccccccchhhhhccCCccccccccCC----CCCCcchhhhhcCcccccc
Q 027264 123 GEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDM----TKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~----~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
+.++|++||.|+..+|. .+.+++..+. .+..+. ..=..+...+..||++||.
T Consensus 2 D~~~Ci~Cg~C~~~aP~-vF~~~d~~~~-------~~v~~~~~~~~~~~~~~~A~~~CP~~aI~ 57 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPD-VFDYDDDGGK-------AVVLDQPVPEEEEEAAREAAESCPTAAIR 57 (58)
T ss_dssp -TTT--S-SHHHHH-TT-TEEEETTSTE-------EECTTCCCSHCHHHHHHHHHHHSTT--EE
T ss_pred ChhhCcCCChHHHhCcH-heeEcCCCCe-------EEEeCCCcChHHHHHHHHHHHcCCHhhcC
Confidence 45799999999999996 2333332110 011110 1112367889999999985
No 178
>PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3CF4_A 1K0T_A 2VKR_C 1JB0_C 3PCQ_C.
Probab=96.77 E-value=0.00034 Score=44.22 Aligned_cols=22 Identities=55% Similarity=1.026 Sum_probs=15.4
Q ss_pred CCCcchhhhhcCcccccccCCC
Q 027264 165 KCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 165 ~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
.|++||.|+.+||.++|.+...
T Consensus 1 ~C~~C~~C~~~CP~~~i~~~~~ 22 (52)
T PF12838_consen 1 KCIGCGACVEACPTGAIRLDEE 22 (52)
T ss_dssp C-SS--HHHHH-TTHHCEEEET
T ss_pred CCCCcCchHHhcCccccCcccc
Confidence 4999999999999999986653
No 179
>PRK08222 hydrogenase 4 subunit H; Validated
Probab=96.66 E-value=0.00074 Score=54.23 Aligned_cols=25 Identities=44% Similarity=0.877 Sum_probs=21.8
Q ss_pred Cccccccccccchhccccccccchh
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.+..+|+.||.|+.+||++||.+..
T Consensus 70 ~~~~~C~~Cg~C~~~CPt~AI~~~~ 94 (181)
T PRK08222 70 LYLGRCIYCGRCEEVCPTRAIQLTN 94 (181)
T ss_pred eccCcCcCCCCcccccCcCeEEecc
Confidence 4457899999999999999998765
No 180
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=96.65 E-value=0.00042 Score=46.03 Aligned_cols=60 Identities=23% Similarity=0.427 Sum_probs=31.4
Q ss_pred CccccccccccchhccccccccchhhhhccCCcc--ccccccCCCCCCcchhhhhcCcccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRR--TTRYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~--~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
++.++|++||.|+..||. .+.+++......... .....+....=..-..-+..||++||.
T Consensus 3 vD~~~C~gcg~C~~~aP~-vF~~d~~g~a~~~~~~~~~~~~v~~~~~~~~~~Aa~~CP~~aI~ 64 (65)
T PF13459_consen 3 VDRDRCIGCGLCVELAPE-VFELDDDGKAVVLVDGGEGEGEVPEEDEEDVREAAEACPVGAIH 64 (65)
T ss_pred EecccCcCccHHHhhCCc-cEEECCCCCEEEEecCcccccCCCchhHHHHHHHHHhCCHhhEE
Confidence 567899999999999995 233332211100000 000011111111124568999999986
No 181
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=96.63 E-value=0.00076 Score=61.17 Aligned_cols=55 Identities=20% Similarity=0.554 Sum_probs=33.0
Q ss_pred cccccccchhccccccccc---hhh--------hhccCCc--cccc-c--ccCCCCCCcchhhhhcCcccc
Q 027264 126 RCIACKLCEAVCPAQAITI---EAE--------EREDGSR--RTTR-Y--DIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~---~~~--------~~~~~~~--~~~~-~--~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
-...+..|..+||.+++.- +.+ .|+.... .... . ..+.+.|++|+.|+++||.++
T Consensus 177 ~~~re~~C~~~CP~g~~qs~m~d~~tl~v~yd~~Rgepr~~~~~~~~~~~~~~~~~Ci~C~~Cv~vCP~gi 247 (434)
T TIGR02745 177 GWMREQFCIYMCPYARIQSVMFDKDTLIVVYDEKRGEPRGPRKGKKDPKAPGPLGDCIDCNLCVQVCPTGI 247 (434)
T ss_pred HeeccchhhhhCCHHHHHHHhccCCcceEecccccCCcCccccccccccCCCCCCCCCChhhhHHhCCCCC
Confidence 3778899999999987652 111 0100000 0000 0 011468999999999999993
No 182
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=96.62 E-value=0.00055 Score=60.67 Aligned_cols=50 Identities=28% Similarity=0.603 Sum_probs=31.9
Q ss_pred cccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcc
Q 027264 124 EERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 178 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~ 178 (226)
.+.|..|..|...||+- -.+.++. ... ...+..-.+.|..||.|...||.
T Consensus 32 ~~iC~~Cr~C~~~Cpvf-P~l~~r~-~~~---~~d~~~~a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 32 MQICNACRYCEGFCAVF-PAMTRRL-EFG---KADIHYLANLCHNCGACLHACQY 81 (389)
T ss_pred hHhCCCCCCccccCCCc-hhhhhhh-cCC---hhhhHHHHHhCcCcccccccCcC
Confidence 57899999999999974 1111110 000 00111123479999999999999
No 183
>COG1145 NapF Ferredoxin [Energy production and conversion]
Probab=96.57 E-value=0.00072 Score=48.06 Aligned_cols=24 Identities=50% Similarity=0.999 Sum_probs=21.6
Q ss_pred ccCCCCCCcchhhhhcCccccccc
Q 027264 160 DIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
.++.+.|++||.|+.+||++||..
T Consensus 25 ~~~~~~Ci~Cg~C~~~CP~~ai~~ 48 (99)
T COG1145 25 VIDAEKCIGCGLCVKVCPTGAIEL 48 (99)
T ss_pred EeCccccCCCCCchhhCCHHHhhc
Confidence 466778999999999999999987
No 184
>TIGR02936 fdxN_nitrog ferredoxin III, nif-specific. Members of this family are homodimeric ferredoxins from nitrogen fixation regions of many nitrogen-fixing bacteria. As characterized in Rhodobacter capsulatus, these proteins are homodimeric, with two 4Fe-4S clusters bound per monomer. Although nif-specific, this protein family is not usiveral, as other nitrogenase systems may substitute flavodoxins, or different types of ferredoxin.
Probab=96.41 E-value=0.00089 Score=47.30 Aligned_cols=27 Identities=37% Similarity=0.698 Sum_probs=23.3
Q ss_pred ccccCCCCCCcchhhhhcCcccccccC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
...++.+.|++|+.|+.+||.++|.+.
T Consensus 15 ~~~i~~~~Ci~C~~Cv~~CP~~~i~~~ 41 (91)
T TIGR02936 15 VTSIDQEKCIGCGRCYKVCGRDVLTLK 41 (91)
T ss_pred eEEECHhHCCCcchHHHHcChhhceee
Confidence 345788899999999999999999765
No 185
>COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion]
Probab=96.35 E-value=0.0011 Score=46.49 Aligned_cols=25 Identities=32% Similarity=0.832 Sum_probs=22.1
Q ss_pred Cccccccccccchhccccccccchh
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
++.+.|-+||.|+.+||+.||.+..
T Consensus 63 idYdyCKGCGICa~vCP~kaI~Mv~ 87 (91)
T COG1144 63 IDYDYCKGCGICANVCPVKAIEMVR 87 (91)
T ss_pred eEcccccCceechhhCChhheEeEe
Confidence 6788999999999999999997653
No 186
>PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed
Probab=96.33 E-value=0.0014 Score=47.70 Aligned_cols=28 Identities=21% Similarity=0.591 Sum_probs=23.4
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.+.++.+.|++|+.|+.+||++++.+..
T Consensus 10 ~v~id~~~Ci~C~~Cv~aCP~~ai~~~~ 37 (103)
T PRK09626 10 PVWVDESRCKACDICVSVCPAGVLAMRI 37 (103)
T ss_pred CeEECcccccCCcchhhhcChhhhcccc
Confidence 4456788999999999999999987543
No 187
>COG1146 Ferredoxin [Energy production and conversion]
Probab=96.33 E-value=0.0011 Score=44.34 Aligned_cols=27 Identities=41% Similarity=0.907 Sum_probs=22.8
Q ss_pred CCCccccccccccchhccccccccchh
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
+..+.+.|++||.|+.+||++||.+..
T Consensus 36 ~~~~~e~C~~C~~C~~~CP~~aI~~~~ 62 (68)
T COG1146 36 VVARPEECIDCGLCELACPVGAIKVDI 62 (68)
T ss_pred eEeccccCccchhhhhhCCcceEEEec
Confidence 345678999999999999999987654
No 188
>PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional
Probab=96.23 E-value=0.002 Score=48.08 Aligned_cols=27 Identities=30% Similarity=0.694 Sum_probs=23.3
Q ss_pred ccccCCCCCCcchhhhhcCcccccccC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
.+.++.+.|++||.|+.+||.+|+...
T Consensus 36 ~i~i~~~~Ci~C~~C~~~CP~~ai~~~ 62 (120)
T PRK08348 36 KILYDVDKCVGCRMCVTVCPAGVFVYL 62 (120)
T ss_pred eEEECcccCcCcccHHHHCCccceEcc
Confidence 456778899999999999999998754
No 189
>PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A.
Probab=96.22 E-value=0.0019 Score=40.64 Aligned_cols=20 Identities=50% Similarity=1.052 Sum_probs=8.6
Q ss_pred cccCCCCCCcchhhhhcCcc
Q 027264 159 YDIDMTKCIYCGFCQEACPV 178 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~ 178 (226)
+.+|.+.|++||.|+.+||.
T Consensus 2 i~id~~~C~~C~~C~~~CP~ 21 (52)
T PF13237_consen 2 IVIDEDKCIGCGRCVKVCPA 21 (52)
T ss_dssp ----TT------TTGGG-TT
T ss_pred CccCcccCcCCcChHHHccc
Confidence 35678899999999999999
No 190
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=96.14 E-value=0.0013 Score=59.01 Aligned_cols=21 Identities=43% Similarity=1.023 Sum_probs=14.5
Q ss_pred CCCCCCcchhhhhcCcccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
....|++||.|+.-||.+||.
T Consensus 48 se~lCigcgicvkkcpf~ai~ 68 (592)
T KOG0063|consen 48 SEELCIGCGICVKKCPFEAIQ 68 (592)
T ss_pred hHhhhccccceeeccCcceEE
Confidence 335677777777777777765
No 191
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=96.09 E-value=0.0025 Score=42.88 Aligned_cols=18 Identities=33% Similarity=0.977 Sum_probs=15.6
Q ss_pred CCCCCCcchhhhhcCccc
Q 027264 162 DMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~ 179 (226)
....|++||.|+.+||++
T Consensus 48 ~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CCccCCCcChHhhhcCCC
Confidence 456799999999999998
No 192
>PLN00071 photosystem I subunit VII; Provisional
Probab=96.05 E-value=0.0026 Score=43.94 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=21.2
Q ss_pred ccCCCCCCcchhhhhcCcccccccC
Q 027264 160 DIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
.++.+.|++|+.|+.+||+++|.+.
T Consensus 5 ~~~~~~C~~C~~C~~~CP~~~i~~~ 29 (81)
T PLN00071 5 VKIYDTCIGCTQCVRACPTDVLEMI 29 (81)
T ss_pred eEcCCcCcChhHHHHHCCccceeee
Confidence 3456789999999999999998764
No 193
>PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=96.00 E-value=0.004 Score=45.46 Aligned_cols=27 Identities=33% Similarity=0.611 Sum_probs=22.9
Q ss_pred ccccCCCCCCcchhhhhcCcccccccC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
...++.+.|++|+.|+.+||.+|+.+.
T Consensus 45 ~p~i~~~~Ci~C~~C~~~CP~~ai~~~ 71 (105)
T PRK09623 45 MPVVDESKCVKCYICWKFCPEPAIYIK 71 (105)
T ss_pred eEEECcccCccccchhhhCCHhheEec
Confidence 456778899999999999999998654
No 194
>PRK06273 ferredoxin; Provisional
Probab=95.99 E-value=0.0029 Score=49.99 Aligned_cols=28 Identities=36% Similarity=0.641 Sum_probs=23.7
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...++...|++||.|+.+||.+||.+..
T Consensus 43 ~~~id~~~CigCg~C~~aCP~~AI~~~~ 70 (165)
T PRK06273 43 PKKVFEELCIGCGGCANVCPTKAIEMIP 70 (165)
T ss_pred CCeECchhCcChhHHHHhcCccceeeec
Confidence 3456778999999999999999997653
No 195
>TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family. A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Probab=95.92 E-value=0.0038 Score=42.73 Aligned_cols=27 Identities=41% Similarity=0.699 Sum_probs=23.0
Q ss_pred ccccCCCCCCcchhhhhcCcccccccC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
...++.+.|++|+.|+.+||.+++.+.
T Consensus 19 ~~~i~~~~C~~C~~C~~~Cp~~ai~~~ 45 (78)
T TIGR02179 19 KPVVDKEKCIKCKNCWLYCPEGAIQED 45 (78)
T ss_pred EEEEcCCcCcChhHHHhhcCccceEec
Confidence 346777899999999999999998764
No 196
>CHL00065 psaC photosystem I subunit VII
Probab=95.91 E-value=0.0034 Score=43.42 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=21.5
Q ss_pred ccCCCCCCcchhhhhcCcccccccCC
Q 027264 160 DIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.++.+.|++|+.|+.+||++++.+.+
T Consensus 5 ~~~~~~Ci~Cg~C~~~CP~~~i~~~~ 30 (81)
T CHL00065 5 VKIYDTCIGCTQCVRACPTDVLEMIP 30 (81)
T ss_pred cCccccCCChhHHHHHCCccchhhee
Confidence 34567899999999999999987644
No 197
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=95.88 E-value=0.0033 Score=54.89 Aligned_cols=46 Identities=35% Similarity=0.588 Sum_probs=33.6
Q ss_pred ccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcc
Q 027264 123 GEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPV 178 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~ 178 (226)
+...|++||.|+.+||. +|...+... ..+..-.|.+|+.|..+||.
T Consensus 3 ~~~~c~~Cg~C~a~cp~-~i~~~~~~~---------~~~~~c~~~~~~~~~~~cp~ 48 (332)
T COG1035 3 DAGLCTGCGTCAAVCPY-AITERDEAP---------LLIEECMDNGHGTCLKVCPE 48 (332)
T ss_pred cCcccccchhhHhhCCc-eEEEecccc---------hhhhhhhcccchHHhhhCcc
Confidence 45689999999999999 777654321 12333456678899999993
No 198
>COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion]
Probab=95.86 E-value=0.0024 Score=55.01 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.0
Q ss_pred cccCCCCCCcchhhhhcCcccccccCC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..++.+.|.+||.|+++||++||....
T Consensus 167 P~~~~E~c~gc~~cv~~C~~gAI~~~~ 193 (317)
T COG2221 167 PKVDEELCRGCGKCVKVCPTGAITWDG 193 (317)
T ss_pred CccCHHHhchhHhHHHhCCCCceeecc
Confidence 567888999999999999999998765
No 199
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=95.78 E-value=0.0044 Score=53.27 Aligned_cols=25 Identities=28% Similarity=0.733 Sum_probs=22.4
Q ss_pred ccccCCCCCCcchhhhhcCcccccc
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
.+.++.+.|++||.|+.+||++|+.
T Consensus 42 ~~~~~~~~C~~C~~C~~~Cp~~a~~ 66 (295)
T TIGR02494 42 ELLFKENRCLGCGKCVEVCPAGTAR 66 (295)
T ss_pred eEEEccccCCCCchhhhhCcccccc
Confidence 4567888999999999999999986
No 200
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=95.75 E-value=0.0025 Score=55.94 Aligned_cols=17 Identities=47% Similarity=1.189 Sum_probs=15.5
Q ss_pred CCCCCcchhhhhcCccc
Q 027264 163 MTKCIYCGFCQEACPVD 179 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~ 179 (226)
...|+.||.|...||.+
T Consensus 350 as~CieCgqCl~~CPq~ 366 (391)
T COG1453 350 ASDCIECGQCLEKCPQH 366 (391)
T ss_pred ccccchhhhhhhcCCCc
Confidence 46799999999999998
No 201
>PRK08493 NADH dehydrogenase subunit G; Validated
Probab=95.72 E-value=0.0052 Score=59.95 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=20.3
Q ss_pred cccccccccchhccccccccchh
Q 027264 124 EERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
...|+.||.|+.+||++||....
T Consensus 203 ~~~C~~CG~Cv~VCPvGAL~~k~ 225 (819)
T PRK08493 203 TLDCSFCGECIAVCPVGALSSSD 225 (819)
T ss_pred cccccccCcHHHhCCCCccccCc
Confidence 46899999999999999998754
No 202
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=95.65 E-value=0.0053 Score=55.05 Aligned_cols=93 Identities=23% Similarity=0.393 Sum_probs=51.2
Q ss_pred CcceecCccccCCCCCCccCccccccCCCcccccc-ccccchhccccccc---cchhhhhccCCccccccccCCC-CCCc
Q 027264 94 KKVTINYPFEKGPLSPRFRGEHALRRYPTGEERCI-ACKLCEAVCPAQAI---TIEAEEREDGSRRTTRYDIDMT-KCIY 168 (226)
Q Consensus 94 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~Ci-~Cg~C~~~CP~~ai---~~~~~~~~~~~~~~~~~~~d~~-~C~~ 168 (226)
++.+..|-++.+....... ..++..+..+..+|. +|..|.+.||.... .+.+. ...+..+ .|+.
T Consensus 181 rr~~C~ylCP~g~~~~v~~-~~~~~~v~~~~~~~~~r~~~c~k~cp~~~~~~v~v~p~----------~~~~~~~~~CI~ 249 (386)
T COG0348 181 RRFWCRYLCPYGAFQGVLF-DKSLLKVNYDDKRGCPRCKRCKKVCPEPIPLWVQVCPA----------GIDIRDGLECIG 249 (386)
T ss_pred ccceeEEeCCHHHHHHHHc-ccceEEEecccccCCcccccccccCCccccceeEeccc----------cccccccccccc
Confidence 4666766554332211111 112222334444454 79999999997653 11111 1111112 5999
Q ss_pred chhhhhcCcccccccCCCcccchhcHHHh
Q 027264 169 CGFCQEACPVDAIVEGPNFEYSTETHEEL 197 (226)
Q Consensus 169 Cg~Cv~~CP~~Ai~~~~~~~~~~~~~~~~ 197 (226)
|+.|+++||.....+.-.+....++....
T Consensus 250 C~~CidaCd~~~~~~~~~~~~i~~~~~~a 278 (386)
T COG0348 250 CGRCIDACDDDMLKFNLPFGLIAYSTFMA 278 (386)
T ss_pred HhhHhhhCCHHhheecccccHHHHHHHHh
Confidence 99999999999887665545554444333
No 203
>TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein.
Probab=95.62 E-value=0.0048 Score=49.63 Aligned_cols=27 Identities=26% Similarity=0.712 Sum_probs=23.1
Q ss_pred CCCccccccccccchhccccccccchh
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
+.++.++|+.||.|+.+||++||.+..
T Consensus 97 ~~id~~~Ci~Cg~Cv~aCP~~AI~~~~ 123 (183)
T TIGR00403 97 YSIDFGVCIFCGNCVEYCPTNCLSMTE 123 (183)
T ss_pred eecCcccccCcCchhhhcCCCCeeccc
Confidence 345678999999999999999998764
No 204
>TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC. Members of this family are PsaC, an essential component of photosystem I (PS-I) reaction center in Cyanobacteria and chloroplasts. This small protein, about 80 amino acids in length, contains two copies of the ferredoxin-like 4Fe-4S binding site (pfam00037) and therefore eight conserved Cys residues. This protein is also called photosystem I subunit VII.
Probab=95.58 E-value=0.0055 Score=42.26 Aligned_cols=24 Identities=38% Similarity=0.768 Sum_probs=20.4
Q ss_pred CCCCCCcchhhhhcCcccccccCC
Q 027264 162 DMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
....|++|+.|+.+||++++.+..
T Consensus 6 ~~~~Ci~C~~Cv~~CP~~~i~~~~ 29 (80)
T TIGR03048 6 IYDTCIGCTQCVRACPTDVLEMVP 29 (80)
T ss_pred cCCcCcCcchHHHHCCccceeeec
Confidence 456899999999999999987643
No 205
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=95.34 E-value=0.0069 Score=53.31 Aligned_cols=49 Identities=33% Similarity=0.625 Sum_probs=30.7
Q ss_pred ccccc--ccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccc
Q 027264 126 RCIAC--KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 126 ~Ci~C--g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
-|..| -.|+.+||++|+...+..+ -+.+|.+.|.+-..|+..||++-+.
T Consensus 182 iCeHCLNPsCvasCPsgaiYKReEDG--------IVLiDQd~CRGwR~CvsgCPYKKvY 232 (513)
T COG1140 182 LCEHCLNPSCVASCPSGAIYKREEDG--------IVLIDQDKCRGWRMCVSGCPYKKVY 232 (513)
T ss_pred HHhhcCCcHHhhcCCcccccccccCc--------eEEeecccccchhhhhcCCCcceeE
Confidence 36666 3677777777775543322 2345666777777777777776664
No 206
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=95.27 E-value=0.0066 Score=50.23 Aligned_cols=48 Identities=31% Similarity=0.778 Sum_probs=38.1
Q ss_pred Cccc-cccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 122 TGEE-RCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 122 ~~~~-~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
+++. -|++|+.|...||+.+|.... - ..+...|+.||.|...||.+..
T Consensus 186 l~qg~~C~G~~TC~A~CP~~ai~c~G-c-----------~g~~~~~~~~Ga~~v~~~rs~~ 234 (247)
T COG1941 186 LEQGLPCMGCGTCAASCPSRAIPCRG-C-----------RGNIPRCIKCGACFVSCPRSKG 234 (247)
T ss_pred ecCCCcccCchhhhccCCccCCcccC-C-----------cCCcccchhhhHHHHHHhHHhh
Confidence 3444 799999999999999998763 1 2345689999999999998743
No 207
>PF13746 Fer4_18: 4Fe-4S dicluster domain
Probab=95.25 E-value=0.0068 Score=40.78 Aligned_cols=18 Identities=50% Similarity=1.208 Sum_probs=16.0
Q ss_pred ccccccccccchhccccc
Q 027264 123 GEERCIACKLCEAVCPAQ 140 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ 140 (226)
....|++||.|+.+||++
T Consensus 48 ~~~~CVgCgrCv~~CP~~ 65 (69)
T PF13746_consen 48 GEGDCVGCGRCVRVCPAG 65 (69)
T ss_pred CCccCCCcChHhhhcCCC
Confidence 456799999999999986
No 208
>PRK06991 ferredoxin; Provisional
Probab=95.23 E-value=0.0081 Score=51.22 Aligned_cols=26 Identities=54% Similarity=0.957 Sum_probs=22.5
Q ss_pred cccCCCCCCcchhhhhcCcccccccC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
..++.+.|++||.|+.+||+++|...
T Consensus 80 ~~id~~~CigCg~Cv~aCP~~AI~~~ 105 (270)
T PRK06991 80 AVIDEQLCIGCTLCMQACPVDAIVGA 105 (270)
T ss_pred eEEccccCCCCcHHHHhCCHhheecc
Confidence 35677899999999999999999754
No 209
>PRK05888 NADH dehydrogenase subunit I; Provisional
Probab=95.21 E-value=0.011 Score=46.49 Aligned_cols=22 Identities=41% Similarity=0.998 Sum_probs=19.4
Q ss_pred CCCCcchhhhhcCcccccccCC
Q 027264 164 TKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+.|++|+.|+.+||.+||.+..
T Consensus 58 ~~Ci~C~~C~~~CP~~ai~~~~ 79 (164)
T PRK05888 58 ERCIACKLCAAICPADAITIEA 79 (164)
T ss_pred ccCCcccChHHHcCcccccccc
Confidence 4899999999999999987654
No 210
>CHL00014 ndhI NADH dehydrogenase subunit I
Probab=95.17 E-value=0.0086 Score=47.41 Aligned_cols=27 Identities=26% Similarity=0.712 Sum_probs=22.7
Q ss_pred CCCccccccccccchhccccccccchh
Q 027264 120 YPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
+.++.+.|+.||.|+.+||.+||.+..
T Consensus 94 ~~id~~~C~~Cg~C~~~CP~~AI~~~~ 120 (167)
T CHL00014 94 YSIDFGVCIFCGNCVEYCPTNCLSMTE 120 (167)
T ss_pred ccCCCCcCcCccchHhhcCcCceecCC
Confidence 345667899999999999999998754
No 211
>TIGR01971 NuoI NADH-quinone oxidoreductase, chain I. This model represents the I subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes "I" subunits from the closely related F420H2 dehydrogenase and formate hydrogenlyase complexes.
Probab=94.98 E-value=0.0099 Score=44.28 Aligned_cols=26 Identities=46% Similarity=0.976 Sum_probs=22.1
Q ss_pred Cccccccccccchhccccccccchhh
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAE 147 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~ 147 (226)
++.++|+.||.|+.+||.+++.+...
T Consensus 79 ~~~~~C~~Cg~Cv~~CP~~al~~~~~ 104 (122)
T TIGR01971 79 INFGRCIFCGLCEEACPTDAIVLTPE 104 (122)
T ss_pred ECcccCCCCCchhhhCCCccccccce
Confidence 45678999999999999999987543
No 212
>PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed
Probab=94.97 E-value=0.0083 Score=45.71 Aligned_cols=28 Identities=29% Similarity=0.440 Sum_probs=23.0
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
...++.+.|++|+.|+.+||.+||....
T Consensus 53 ~p~~d~~~Ci~C~~C~~~CP~~ai~~~~ 80 (133)
T PRK09625 53 KPVHNNEICINCFNCWVYCPDAAILSRD 80 (133)
T ss_pred eEEEehhHCcChhhHHHhCCHhheEecC
Confidence 3456778999999999999999986443
No 213
>TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit. During dissimilatory sulfate reduction and sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the beta subunit of APS reductase, sharing common evolutionary origin with other iron-sulfur cluster-binding proteins.
Probab=94.93 E-value=0.011 Score=45.07 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.5
Q ss_pred ccCCCCCCcch-----hhhhcCcccccccCC
Q 027264 160 DIDMTKCIYCG-----FCQEACPVDAIVEGP 185 (226)
Q Consensus 160 ~~d~~~C~~Cg-----~Cv~~CP~~Ai~~~~ 185 (226)
.++...|++|+ .|+.+||.++|.++.
T Consensus 4 ~v~~~~C~gC~~~~~~~Cv~~CP~~ai~~~~ 34 (132)
T TIGR02060 4 FVYPTKCDGCKAGEKTACVYICPNDLMHLDT 34 (132)
T ss_pred EEccccccCccCCchhcCHhhcCccceEecC
Confidence 46778899999 999999999997654
No 214
>PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed
Probab=94.90 E-value=0.0094 Score=43.52 Aligned_cols=24 Identities=29% Similarity=0.786 Sum_probs=20.8
Q ss_pred Cccccccccccchhccccccccch
Q 027264 122 TGEERCIACKLCEAVCPAQAITIE 145 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~ 145 (226)
++.++|++|+.|+.+||.+||.+.
T Consensus 78 id~~~C~~Cg~Cv~~CP~~AI~~~ 101 (105)
T PRK09624 78 FDYDYCKGCGICANECPTKAIEMV 101 (105)
T ss_pred ECchhCCCcCchhhhcCcCcEEEe
Confidence 456799999999999999998764
No 215
>PRK13409 putative ATPase RIL; Provisional
Probab=94.83 E-value=0.0091 Score=56.49 Aligned_cols=25 Identities=44% Similarity=0.898 Sum_probs=21.8
Q ss_pred CCccccccccccchhccccccccch
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIE 145 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~ 145 (226)
.+.++.|++||.|++.||..||.+.
T Consensus 45 ~~~e~~c~~c~~c~~~cp~~a~~i~ 69 (590)
T PRK13409 45 VISEELCIGCGICVKKCPFDAISIV 69 (590)
T ss_pred eeeHhhccccccccccCCcceEEEe
Confidence 3567899999999999999998864
No 216
>PRK02651 photosystem I subunit VII; Provisional
Probab=94.82 E-value=0.012 Score=40.45 Aligned_cols=24 Identities=38% Similarity=1.009 Sum_probs=20.6
Q ss_pred ccccccccccchhccccccccchh
Q 027264 123 GEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
+..+|+.||.|+.+||.++|.+..
T Consensus 44 ~~~~C~~Cg~C~~~CP~~ai~~~~ 67 (81)
T PRK02651 44 RTEDCVGCKRCETACPTDFLSIRV 67 (81)
T ss_pred CCCcCCChhhhhhhcCCCceEEEE
Confidence 456899999999999999998643
No 217
>TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the B subunit.
Probab=94.67 E-value=0.014 Score=46.03 Aligned_cols=27 Identities=52% Similarity=0.871 Sum_probs=22.9
Q ss_pred cccCCCCCCcchhhhhcCcccccccCC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..++.+.|++|+.|+++||++|+....
T Consensus 108 ~~id~~~Ci~Cg~C~~aCp~~ai~~~~ 134 (165)
T TIGR01944 108 ALIDEDNCIGCTKCIQACPVDAIVGAA 134 (165)
T ss_pred EEEECCcCCChhHHHHhCCccceEecC
Confidence 456778999999999999999987643
No 218
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=94.65 E-value=0.01 Score=53.91 Aligned_cols=25 Identities=44% Similarity=0.898 Sum_probs=21.6
Q ss_pred CCccccccccccchhccccccccch
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIE 145 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~ 145 (226)
.+....|++||.|++.||.+||.+.
T Consensus 46 vIsE~lCiGCGICvkkCPF~AI~Iv 70 (591)
T COG1245 46 VISEELCIGCGICVKKCPFDAISIV 70 (591)
T ss_pred eeEhhhhccchhhhccCCcceEEEe
Confidence 3557789999999999999999864
No 219
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=94.63 E-value=0.0087 Score=53.93 Aligned_cols=55 Identities=25% Similarity=0.337 Sum_probs=40.9
Q ss_pred CccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+....|++||.|++.||..||.+..-.. -.....+|..|+.|...||..+...++
T Consensus 47 ise~lCigcgicvkkcpf~ai~iinlp~---------nl~~etthry~~n~fKlhrlp~prpg~ 101 (592)
T KOG0063|consen 47 ISEELCIGCGICVKKCPFEAIQIINLPT---------NLEKETTHRYSANSFKLHRLPIPRPGQ 101 (592)
T ss_pred hhHhhhccccceeeccCcceEEecCCch---------hHhhhhhhhhcccceeeccCCCCCcch
Confidence 4456899999999999999987643211 112235799999999999988776443
No 220
>PRK09326 F420H2 dehydrogenase subunit F; Provisional
Probab=94.39 E-value=0.017 Score=50.98 Aligned_cols=27 Identities=33% Similarity=0.824 Sum_probs=23.3
Q ss_pred ccCCCCCCcchhhhhcCcccccccCCC
Q 027264 160 DIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
.++.+.|++||.|+.+||+++|.+.+.
T Consensus 8 vi~~~~C~gCg~C~~~CP~~aI~~~~~ 34 (341)
T PRK09326 8 VIEYDVCTACGACEAVCPIGAITVDKK 34 (341)
T ss_pred EECcccCcChHHHHHhCCHhhhecccC
Confidence 466789999999999999999987654
No 221
>PRK05113 electron transport complex protein RnfB; Provisional
Probab=94.34 E-value=0.018 Score=46.62 Aligned_cols=27 Identities=52% Similarity=0.862 Sum_probs=22.8
Q ss_pred cccCCCCCCcchhhhhcCcccccccCC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..++.+.|++||.|+++||+++|....
T Consensus 109 ~~id~~~Ci~Cg~Cv~aCp~~ai~~~~ 135 (191)
T PRK05113 109 AFIDEDNCIGCTKCIQACPVDAIVGAT 135 (191)
T ss_pred eEEeCCcCCCCChhhhhCCHhhheccc
Confidence 456788999999999999999987543
No 222
>PRK08764 ferredoxin; Provisional
Probab=94.11 E-value=0.02 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.843 Sum_probs=20.0
Q ss_pred Cccccccccccchhccccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITI 144 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~ 144 (226)
++.++|+.||.|+.+||+++|.+
T Consensus 112 v~~~~C~~Cg~Cv~~CP~~Ai~~ 134 (135)
T PRK08764 112 VIAPLCTGCELCVPACPVDCIEL 134 (135)
T ss_pred ecCCcCcCccchhhhcCccceEe
Confidence 45678999999999999999864
No 223
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=94.09 E-value=0.015 Score=49.30 Aligned_cols=25 Identities=52% Similarity=0.942 Sum_probs=22.2
Q ss_pred ccccCCCCCCcchhhhhcCcccccc
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
.+.++.+.|+.||.|..+|+.+||.
T Consensus 63 ~p~i~~e~C~~CG~C~~vC~f~Ai~ 87 (284)
T COG1149 63 IPEIDPEKCIRCGKCAEVCRFGAIV 87 (284)
T ss_pred ccccChhhccccCcHHHhCCCCeEE
Confidence 4567788899999999999999996
No 224
>TIGR02512 Fe_only_hydrog hydrogenases, Fe-only. This model describes iron-only hydrogenases of anaerobic and microaerophilic bacteria and protozoa. This model is narrower, and covers a longer stretch of sequence, than Pfam model pfam02906. This family represents a division among families that belong to pfam02906, which also includes proteins such as nuclear prelamin A recognition factor in animals. Note that this family shows some heterogeneity in terms of periplasmic, cytosolic, or hydrogenosome location, NAD or NADP dependence, and overal protein protein length.
Probab=94.09 E-value=0.018 Score=51.48 Aligned_cols=23 Identities=52% Similarity=0.888 Sum_probs=20.5
Q ss_pred ccCCCCCCcchhhhhcCcccccc
Q 027264 160 DIDMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
.+|...|++||.|+.+||++|+.
T Consensus 3 ~id~~kCi~Cg~Cv~~CP~~ai~ 25 (374)
T TIGR02512 3 VRDMSKCIGCGRCVRACTNVQIV 25 (374)
T ss_pred EechhhCCcChHhhhhCCHhhcc
Confidence 45678899999999999999986
No 225
>TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit. This model describes the beta subunit of sulfite reductase.
Probab=93.84 E-value=0.021 Score=50.42 Aligned_cols=24 Identities=38% Similarity=0.809 Sum_probs=21.5
Q ss_pred CCCccccccccccchhcccccccc
Q 027264 120 YPTGEERCIACKLCEAVCPAQAIT 143 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~~ai~ 143 (226)
+.++.++|++||.|+.+||..++.
T Consensus 209 ~~id~~~Ci~Cg~Ci~~CP~~a~~ 232 (341)
T TIGR02066 209 LEVDVEKCIYCGNCYTMCPAMPIF 232 (341)
T ss_pred eeeccccCCcCCchHHhCchhhcc
Confidence 457789999999999999999886
No 226
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=93.68 E-value=0.022 Score=54.46 Aligned_cols=19 Identities=21% Similarity=0.642 Sum_probs=13.5
Q ss_pred CCCccccccccccchhccc
Q 027264 120 YPTGEERCIACKLCEAVCP 138 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP 138 (226)
+..|.++||.||.|+++|.
T Consensus 611 i~~D~~kCI~CgrCv~~C~ 629 (652)
T PRK12814 611 IRFEREKCVDCGICVRTLE 629 (652)
T ss_pred eEeccccccCchHHHHHHH
Confidence 4456777777777777776
No 227
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=93.64 E-value=0.025 Score=47.17 Aligned_cols=27 Identities=44% Similarity=0.855 Sum_probs=22.9
Q ss_pred cccCCCCCCcchhhhhcCcccccccCC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+.++.+.|++|+.|+.+||.+++...+
T Consensus 143 ~~id~~~C~~C~~C~~~CP~~ai~~~~ 169 (234)
T TIGR02700 143 YMIDRKRCKGCGICVDACPRSAIDMVD 169 (234)
T ss_pred eEEChhHCcCcchHHHhCCcccEEecC
Confidence 456778899999999999999997643
No 228
>TIGR00402 napF ferredoxin-type protein NapF. The gene codes for a ferredoxin-type cytosolic protein, NapF, of the periplasmic nitrate reductase system, as in Escherichia coli. NapF interacts with the catalytic subunit, NapA, and may be an accessory protein for NapA maturation.
Probab=93.63 E-value=0.026 Score=40.81 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=20.1
Q ss_pred Cccccccccccchhccccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITI 144 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~ 144 (226)
++.+.|+.||.|+.+||+++|..
T Consensus 63 i~~~~C~~Cg~C~~~CP~~Ai~~ 85 (101)
T TIGR00402 63 FDNAECDFCGKCAEACPTNAFHP 85 (101)
T ss_pred ecCccCcCccChhhHCCccccCc
Confidence 45678999999999999999865
No 229
>PRK15449 ferredoxin-like protein FixX; Provisional
Probab=93.45 E-value=0.027 Score=40.32 Aligned_cols=22 Identities=18% Similarity=0.474 Sum_probs=19.0
Q ss_pred CCccccccccccchhccccccc
Q 027264 121 PTGEERCIACKLCEAVCPAQAI 142 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai 142 (226)
.++.++|++||.|+.+||..++
T Consensus 57 ~vd~e~CigCg~C~~~C~~~~~ 78 (95)
T PRK15449 57 RFDYAGCLECGTCRILGLGSAL 78 (95)
T ss_pred EEcCCCCCcchhhhhhcCCCCc
Confidence 3678999999999999998764
No 230
>TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma. This model represents that clade of F420-dependent hydrogenases (FRH) beta subunits found exclusively and universally in methanogenic archaea. This protein contains two 4Fe-4S cluster binding domains (pfam00037) and scores above the trusted cutoff to model pfam01058 for the "NADH ubiquinone oxidoreductase, 20 Kd subunit" family.
Probab=93.39 E-value=0.028 Score=46.74 Aligned_cols=27 Identities=33% Similarity=0.685 Sum_probs=23.3
Q ss_pred cccCCCCCCcchhhhhcCcccccccCC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..++...|++|+.|+.+||.+|+....
T Consensus 169 ~~id~~~C~~C~~C~~aCP~~ai~~~~ 195 (228)
T TIGR03294 169 KVVNQGLCMGCGTCAAACPTRAIEMED 195 (228)
T ss_pred EEEChhhCcChhHHHHhCCHhhEEEeC
Confidence 457778999999999999999997654
No 231
>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein. Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.
Probab=93.33 E-value=0.038 Score=50.01 Aligned_cols=28 Identities=43% Similarity=0.872 Sum_probs=23.9
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
+..++.+.|++|+.|+.+||+++|...+
T Consensus 4 ~~~id~~~Ci~C~~C~~~CP~~ai~~~~ 31 (411)
T TIGR03224 4 QHLIDPEICIRCNTCEETCPIDAITHDD 31 (411)
T ss_pred eeeeCcccCcCccchhhhCCcccEeccC
Confidence 4567888999999999999999997644
No 232
>COG1141 Fer Ferredoxin [Energy production and conversion]
Probab=93.31 E-value=0.027 Score=37.68 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=18.3
Q ss_pred cccCCCCCCcchhhhhcCcccc
Q 027264 159 YDIDMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~A 180 (226)
..+|.++|++||.|..+||.--
T Consensus 3 v~vDrd~Cigcg~C~~~aPdvF 24 (68)
T COG1141 3 VIVDRDTCIGCGACLAVAPDVF 24 (68)
T ss_pred EEechhhccccchhhhcCCcce
Confidence 3567789999999999999653
No 233
>TIGR02486 RDH reductive dehalogenase. This model represents a family of corrin and 8-iron Fe-S cluster-containing reductive dehalogenases found primarily in halorespiring microorganisms such as dehalococcoides ethenogenes which contains as many as 17 enzymes of this type with varying substrate ranges. One example of a characterized species is the tetrachloroethene reductive dehalogenase (1.97.1.8) which also acts on trichloroethene converting it to dichloroethene.
Probab=93.25 E-value=0.036 Score=48.31 Aligned_cols=22 Identities=41% Similarity=0.943 Sum_probs=19.5
Q ss_pred CCCCcchhhhhcCcccccccCC
Q 027264 164 TKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.-|..|+.|+++||++||....
T Consensus 205 ~fC~~C~~C~~~CP~~Ai~~~~ 226 (314)
T TIGR02486 205 KFCETCGKCADECPSGAISKGG 226 (314)
T ss_pred ccCcchhHHHhhCCccccCCCC
Confidence 4699999999999999998654
No 234
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=93.05 E-value=0.27 Score=46.23 Aligned_cols=73 Identities=18% Similarity=0.046 Sum_probs=41.9
Q ss_pred hhHhhhhccCCcccCcccccCCCCC-CCCCchhHHHHHHHHHHHhhhHHHHHHHHHH---------H----hhhHHHHHH
Q 027264 18 LAVSGQALQGSQHYGLRFNAHPYSS-YFPSKKDDEEKEQLLKEISKDWSSVFERSIN---------M----LFLTEMVRG 83 (226)
Q Consensus 18 ~~i~Gha~~gn~~~~~~~~~H~~~~-~~~~~~p~~~~~~~~~~~~~~v~~~~~~~i~---------~----~~~~~~~~~ 83 (226)
.+++||+.+|| .|++.. ........++..+..+++.+.+ .++.+++. . ..+.+....
T Consensus 458 ~~~~gHaGdGn--------lH~~i~~~~~~~~~~~~~~~~~~~i~~~~-~~~gGsiSgEHGiG~~k~~~l~~~~g~~~~~ 528 (555)
T PLN02805 458 CTVIAHAGDGN--------FHTIILFDPSQEDQRREAERLNHFMVHTA-LSMEGTCTGEHGVGTGKMKYLEKELGIEALQ 528 (555)
T ss_pred EEEEEEcCCCc--------EEEEeccCCCCHHHHHHHHHHHHHHHHHH-HHcCCeEeEECCCChhHHHHHHHhcCHHHHH
Confidence 67889999999 999432 1111122223333333333332 12222111 1 122345788
Q ss_pred HHHHHHHhcCCcceec
Q 027264 84 LGLTLKYFFDKKVTIN 99 (226)
Q Consensus 84 l~~~~~~~f~~~~~~~ 99 (226)
++..+|..|||...+|
T Consensus 529 lm~~IK~a~DP~gILN 544 (555)
T PLN02805 529 TMKRIKKALDPNNIMN 544 (555)
T ss_pred HHHHHHHHhCcCcCCC
Confidence 8999999999999998
No 235
>COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion]
Probab=92.99 E-value=0.032 Score=44.37 Aligned_cols=29 Identities=48% Similarity=0.802 Sum_probs=24.4
Q ss_pred ccccCCCCCCcchhhhhcCcccccccCCC
Q 027264 158 RYDIDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
...++...|++|..|+++||++||.-...
T Consensus 109 va~i~e~~ciGCtkCiqaCpvdAivg~~~ 137 (198)
T COG2878 109 VALIDEANCIGCTKCIQACPVDAIVGATK 137 (198)
T ss_pred eeEecchhccccHHHHHhCChhhhhccch
Confidence 34577789999999999999999986554
No 236
>TIGR02912 sulfite_red_C sulfite reductase, subunit C. Members of this protein family include the C subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=92.99 E-value=0.035 Score=48.39 Aligned_cols=26 Identities=31% Similarity=0.658 Sum_probs=22.1
Q ss_pred CCccccccccccchhccccccccchh
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.++.++|+.||.|+.+||++|+....
T Consensus 197 ~id~~~C~~Cg~Cv~~CP~~Al~~~~ 222 (314)
T TIGR02912 197 VRDHSKCIGCGECVLKCPTGAWTRSE 222 (314)
T ss_pred EeCCCcCcCcchhhhhCCHhhcccCc
Confidence 35678999999999999999987543
No 237
>PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional
Probab=92.91 E-value=0.038 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.802 Sum_probs=20.5
Q ss_pred Cccccccccccchhccccccccch
Q 027264 122 TGEERCIACKLCEAVCPAQAITIE 145 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~ 145 (226)
.+.+.|++|+.|+.+||++||.+.
T Consensus 286 ~d~~~C~gCg~C~~~CP~~AI~~~ 309 (312)
T PRK14028 286 FDYQYCKGCGVCAEVCPTGAIQMV 309 (312)
T ss_pred CCcccCcCcCchhhhCCHhheEec
Confidence 345789999999999999998764
No 238
>PF13459 Fer4_15: 4Fe-4S single cluster domain
Probab=92.73 E-value=0.044 Score=36.17 Aligned_cols=19 Identities=42% Similarity=0.943 Sum_probs=16.3
Q ss_pred ccCCCCCCcchhhhhcCcc
Q 027264 160 DIDMTKCIYCGFCQEACPV 178 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~ 178 (226)
.+|.+.|++||.|+..||.
T Consensus 2 ~vD~~~C~gcg~C~~~aP~ 20 (65)
T PF13459_consen 2 WVDRDRCIGCGLCVELAPE 20 (65)
T ss_pred EEecccCcCccHHHhhCCc
Confidence 3566889999999999994
No 239
>TIGR00276 iron-sulfur cluster binding protein, putative. This series of proteins contain the prosite signature for 4Fe-4S ferredoxins iron-sulfur binding proteins (C-x(2)-C-x(2)-C-x(3)-C-[PEG]) between residues 175-188 of the model.
Probab=92.70 E-value=0.053 Score=46.58 Aligned_cols=21 Identities=43% Similarity=0.873 Sum_probs=18.6
Q ss_pred CCCCCcchhhhhcCccccccc
Q 027264 163 MTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
...|..|+.|+++||++||..
T Consensus 158 ~~~C~~C~~C~~aCPt~AI~~ 178 (282)
T TIGR00276 158 EEYCGRCTKCIDACPTQALVE 178 (282)
T ss_pred CCCCccHHHHHHhcCcccccC
Confidence 357999999999999999973
No 240
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=92.60 E-value=0.16 Score=41.66 Aligned_cols=73 Identities=22% Similarity=0.131 Sum_probs=43.5
Q ss_pred hhHhhhhccCCcccCcccccCCCCC-CCCCchhHHHHHHHHHHHhhhHHHHHHHHHH-------------HhhhHHHHHH
Q 027264 18 LAVSGQALQGSQHYGLRFNAHPYSS-YFPSKKDDEEKEQLLKEISKDWSSVFERSIN-------------MLFLTEMVRG 83 (226)
Q Consensus 18 ~~i~Gha~~gn~~~~~~~~~H~~~~-~~~~~~p~~~~~~~~~~~~~~v~~~~~~~i~-------------~~~~~~~~~~ 83 (226)
..++||+.+|| .|.+.. ........+...+.++++.+.+. ++.+++. .....+....
T Consensus 158 ~~~~gH~~~g~--------~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~gG~is~eHG~G~~k~~~~~~~~~~~~~~ 228 (248)
T PF02913_consen 158 VCHFGHAGDGN--------LHLYILFDPRDPEEPERAEALWDELYELVL-ELGGSISAEHGIGKLKKPYLEEEYGPAALR 228 (248)
T ss_dssp EEEEEEEEECE--------EEEEEEEETTSHHHHHHHHHHHHHHHHHHH-HTT-BBSSSSGGGHHHHHHHCHHCHHHHHH
T ss_pred ccceEEccCCe--------EEEEeecccchHHHHHHHHHHHHHHHHHHH-hcccccccccchhhhhHHHHHHhcchHHHH
Confidence 78999999999 999433 23333444444555555544332 2222111 1223345788
Q ss_pred HHHHHHHhcCCcceec
Q 027264 84 LGLTLKYFFDKKVTIN 99 (226)
Q Consensus 84 l~~~~~~~f~~~~~~~ 99 (226)
++..+|..|||..++|
T Consensus 229 ~~~~iK~~~DP~~ilN 244 (248)
T PF02913_consen 229 LMRAIKQAFDPNGILN 244 (248)
T ss_dssp HHHHHHHHH-TTS-BS
T ss_pred HHHHhhhccCCccCCC
Confidence 9999999999999988
No 241
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=92.47 E-value=0.46 Score=42.97 Aligned_cols=72 Identities=21% Similarity=0.092 Sum_probs=41.1
Q ss_pred hhHhhhhccCCcccCcccccCCCCCCCCCchh--HHHHHHHHHHHhhhHHHHHHH-------------HHHHhhhHHHHH
Q 027264 18 LAVSGQALQGSQHYGLRFNAHPYSSYFPSKKD--DEEKEQLLKEISKDWSSVFER-------------SINMLFLTEMVR 82 (226)
Q Consensus 18 ~~i~Gha~~gn~~~~~~~~~H~~~~~~~~~~p--~~~~~~~~~~~~~~v~~~~~~-------------~i~~~~~~~~~~ 82 (226)
.+++||+.+|| +|.+.. +....+ .++..+..+++.+.+.+ +.+ ......+.+...
T Consensus 324 ~~~~gH~g~g~--------lh~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~gG~is~eHG~G~~r~~~~~~~~~~~~~ 393 (413)
T TIGR00387 324 IANFGHAGDGN--------LHPTIL-TDPEDKGEMERVEEAGGEIFELAIE-LGGTISGEHGIGVVKAEFMPYKFNEKEL 393 (413)
T ss_pred EEEEEEecCCc--------cccccC-CCCCCHHHHHHHHHHHHHHHHHHHH-cCCEEEEeccCcHhHHHHHHHhcCHHHH
Confidence 56899999999 998433 222222 22333444444433221 111 111122234577
Q ss_pred HHHHHHHHhcCCcceec
Q 027264 83 GLGLTLKYFFDKKVTIN 99 (226)
Q Consensus 83 ~l~~~~~~~f~~~~~~~ 99 (226)
.++..+|..|||...+|
T Consensus 394 ~~~~~iK~~fDP~~ilN 410 (413)
T TIGR00387 394 ETMRAIKKAFDPDNILN 410 (413)
T ss_pred HHHHHHHHHcCcCcCCC
Confidence 88999999999988887
No 242
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=92.44 E-value=0.044 Score=52.44 Aligned_cols=23 Identities=35% Similarity=0.923 Sum_probs=19.8
Q ss_pred Cccccccccccchhccccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAITI 144 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~ 144 (226)
++.+.|+.||.|+.+||++|+.-
T Consensus 189 i~~SSCVsCG~CvtVCP~nALme 211 (978)
T COG3383 189 INESSCVSCGACVTVCPVNALME 211 (978)
T ss_pred cccccccccCccceecchhhhhh
Confidence 45678999999999999998754
No 243
>PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A ....
Probab=92.19 E-value=0.055 Score=34.98 Aligned_cols=18 Identities=50% Similarity=0.979 Sum_probs=11.3
Q ss_pred CCCCCCcchhhhhcCccc
Q 027264 162 DMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~ 179 (226)
|.+.|++||.|...+|.-
T Consensus 2 D~~~Ci~Cg~C~~~aP~v 19 (58)
T PF13370_consen 2 DRDKCIGCGLCVEIAPDV 19 (58)
T ss_dssp -TTT--S-SHHHHH-TTT
T ss_pred ChhhCcCCChHHHhCcHh
Confidence 457899999999999965
No 244
>COG1140 NarY Nitrate reductase beta subunit [Energy production and conversion]
Probab=92.12 E-value=0.28 Score=43.53 Aligned_cols=48 Identities=27% Similarity=0.749 Sum_probs=35.8
Q ss_pred CCccccccccccchhccccccccchhhhhccCCccccccccCCCCCCcc---------hhhhhcCccccc
Q 027264 121 PTGEERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC---------GFCQEACPVDAI 181 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~C---------g~Cv~~CP~~Ai 181 (226)
.+|+++|-+...|++.||..-+.+.... -..++|++| -.|...| +|-|
T Consensus 210 LiDQd~CRGwR~CvsgCPYKKvYfNwks------------gKsEKCifCyPRiEaGqPtVCSeTC-VGri 266 (513)
T COG1140 210 LIDQDKCRGWRMCVSGCPYKKVYFNWKS------------GKSEKCIFCYPRIEAGQPTVCSETC-VGRI 266 (513)
T ss_pred EeecccccchhhhhcCCCcceeEeeccC------------CCcceeEEeccccccCCCccchhhh-hcce
Confidence 3789999999999999999877664321 234689999 3588888 4444
No 245
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=92.01 E-value=0.05 Score=49.28 Aligned_cols=26 Identities=42% Similarity=0.943 Sum_probs=22.6
Q ss_pred Cccccccccccchhcccc-ccccchhh
Q 027264 122 TGEERCIACKLCEAVCPA-QAITIEAE 147 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~-~ai~~~~~ 147 (226)
++.++|++||.|+.+||. +||.+...
T Consensus 374 i~~~~C~~Cg~C~~~CP~~~Ai~~~~~ 400 (420)
T PRK08318 374 VIEEECVGCNLCAHVCPVEGCITMGEV 400 (420)
T ss_pred echhhCcccchHHhhCCCCCCEEEecc
Confidence 567899999999999999 99987654
No 246
>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated
Probab=91.91 E-value=0.06 Score=44.91 Aligned_cols=23 Identities=35% Similarity=0.806 Sum_probs=20.0
Q ss_pred cccccccccchhccccccccchh
Q 027264 124 EERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
...|+.||.|+.+||++||....
T Consensus 189 ~~~C~~Cg~Cv~vCP~gAL~~~~ 211 (234)
T PRK07569 189 SETCTSCGKCVQACPTGAIFRKG 211 (234)
T ss_pred cccccchHHHHHhCCCCcEEecC
Confidence 45899999999999999997654
No 247
>COG2768 Uncharacterized Fe-S center protein [General function prediction only]
Probab=91.74 E-value=0.071 Score=45.86 Aligned_cols=26 Identities=38% Similarity=0.755 Sum_probs=22.1
Q ss_pred cccCCCCCCcchhhhhcCcccccccC
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
..+....|..||.|+..||++||...
T Consensus 188 p~v~e~kc~~c~~cv~~cp~~Ai~~~ 213 (354)
T COG2768 188 PVVVEEKCYDCGLCVKICPVGAITLT 213 (354)
T ss_pred ceeeeecccccchhhhhCCCcceecc
Confidence 34566889999999999999999855
No 248
>TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This protein is a predicted to bind FeS clusters, based on the presence of two copies of the Fer4 domain (pfam00037), with each copy having four Cys residues invariant across all members.
Probab=91.42 E-value=0.058 Score=48.23 Aligned_cols=26 Identities=27% Similarity=0.823 Sum_probs=22.3
Q ss_pred Cccccccccccchhccccccccchhh
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEAE 147 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~~ 147 (226)
++.++|+.|+.|+.+||.+|+.+...
T Consensus 327 Id~~~Ci~CGaCV~aCP~~AI~~~~~ 352 (391)
T TIGR03287 327 LNTEDCFGCGYCAEICPGGAFEVNLG 352 (391)
T ss_pred eChHhCcChHHHHhhCCccceEEeCC
Confidence 56788999999999999999987543
No 249
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=91.34 E-value=0.092 Score=49.81 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=18.1
Q ss_pred cccccccchhccccccccchh
Q 027264 126 RCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.|..||.|+.+||++||....
T Consensus 183 ~~~~cg~cv~vCP~GAl~~k~ 203 (603)
T TIGR01973 183 ESELSGNLIDICPVGALTSKP 203 (603)
T ss_pred CCcccCChHhhCCcccccccc
Confidence 578999999999999997543
No 250
>PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N ....
Probab=91.19 E-value=0.064 Score=34.06 Aligned_cols=16 Identities=38% Similarity=1.030 Sum_probs=8.2
Q ss_pred ccccccccchhccccc
Q 027264 125 ERCIACKLCEAVCPAQ 140 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ 140 (226)
..|+.||.|+.+||++
T Consensus 41 ~~C~~C~~C~~~CP~~ 56 (57)
T PF13183_consen 41 WSCTTCGACSEVCPVG 56 (57)
T ss_dssp GG-----HHHHH-TT-
T ss_pred cCCcCcCCccCcCccc
Confidence 6799999999999986
No 251
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=91.17 E-value=0.074 Score=49.90 Aligned_cols=28 Identities=29% Similarity=0.598 Sum_probs=22.7
Q ss_pred cCCCccccccccccchhccccccccchh
Q 027264 119 RYPTGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
+..+|+..|++||.|+++||+.++....
T Consensus 602 k~~id~~~C~GCg~C~~iCP~~a~~~~~ 629 (640)
T COG4231 602 KARIDPSSCNGCGSCVEVCPSFAIKEGG 629 (640)
T ss_pred ceeecccccccchhhhhcCchhheeccc
Confidence 3446777899999999999999887543
No 252
>cd07032 RNAP_I_II_AC40 AC40 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC40 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC40 subunit is the equivalent of the RPB3 subunit of RNAP II. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization; and the other is an inserted beta sheet subdomain. The RPB3 subun
Probab=90.96 E-value=0.064 Score=46.23 Aligned_cols=72 Identities=15% Similarity=0.063 Sum_probs=50.0
Q ss_pred cccc--ccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcC-cccccc---cCCCcccchhcHHHhh
Q 027264 125 ERCI--ACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEAC-PVDAIV---EGPNFEYSTETHEELL 198 (226)
Q Consensus 125 ~~Ci--~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~C-P~~Ai~---~~~~~~~~~~~~~~~~ 198 (226)
+.+. .|..|++.||.+.+.+++.... ......++..|+.|..|+..| -.+++. .++.|.+..++.|++.
T Consensus 195 ~~~~~~~~~~~~~~cP~~Vf~i~~~~~~-----~~~~V~~~~~ct~crec~~~~~~~~~V~v~~~~d~fiF~VES~G~l~ 269 (291)
T cd07032 195 KPITGEDAEKLQKCFPPGVIDIEEVKGK-----KKAVVANPRKDTLSREVLRHEEFKDKVELGRVRDHFIFSIESTGALP 269 (291)
T ss_pred CcCCHHHHHHHHhhCCCccEEecccCCC-----ceEEEcccccCcccHhHhhhhccCCceeEEEeCCEEEEEEeCCCCCC
Confidence 3453 6778999999998877542110 012345778999999999876 234553 5677999999999885
Q ss_pred cCH
Q 027264 199 YDK 201 (226)
Q Consensus 199 ~d~ 201 (226)
.+.
T Consensus 270 p~~ 272 (291)
T cd07032 270 PDV 272 (291)
T ss_pred HHH
Confidence 433
No 253
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=90.85 E-value=0.091 Score=53.54 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=21.8
Q ss_pred cccCCCCCCcchhhhhcCccccccc
Q 027264 159 YDIDMTKCIYCGFCQEACPVDAIVE 183 (226)
Q Consensus 159 ~~~d~~~C~~Cg~Cv~~CP~~Ai~~ 183 (226)
..++.+.|+.||.|+.+||++||..
T Consensus 678 p~~~~~~Ci~Cg~C~~vCP~~ai~~ 702 (1165)
T TIGR02176 678 PVWVPDNCIQCNQCAFVCPHAAIRP 702 (1165)
T ss_pred ceeccccCCCccchHHhcChhhccc
Confidence 4567789999999999999999974
No 254
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=90.68 E-value=0.085 Score=49.58 Aligned_cols=25 Identities=32% Similarity=0.911 Sum_probs=21.8
Q ss_pred Cccccccccccchhccccccccchh
Q 027264 122 TGEERCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
++.++|+.||.|+.+||++||.+..
T Consensus 538 i~~~~C~~Cg~C~~~CP~~Ai~~~~ 562 (564)
T PRK12771 538 FDYDKCTGCHICADVCPCGAIEMGP 562 (564)
T ss_pred EecccCcChhHHHhhcCcCceEecc
Confidence 5678999999999999999997643
No 255
>PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B ....
Probab=90.62 E-value=0.09 Score=33.92 Aligned_cols=17 Identities=53% Similarity=1.290 Sum_probs=9.8
Q ss_pred cccccccccchhccccc
Q 027264 124 EERCIACKLCEAVCPAQ 140 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ 140 (226)
.+.|+.||.|..+||.+
T Consensus 43 ~~~C~~Cg~C~~~CP~~ 59 (61)
T PF13534_consen 43 ASLCIGCGLCESVCPQG 59 (61)
T ss_dssp TTT--S--HHHHH-TT-
T ss_pred cccCcCcCcCcccccCC
Confidence 46899999999999986
No 256
>PRK13795 hypothetical protein; Provisional
Probab=90.47 E-value=0.11 Score=49.64 Aligned_cols=26 Identities=35% Similarity=0.698 Sum_probs=22.3
Q ss_pred ccCCCCCCcchhhhhcCcccccccCC
Q 027264 160 DIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.++...|++|+.|+.+||++||...+
T Consensus 577 v~~~~~C~~Cg~C~~~CP~~ai~~~~ 602 (636)
T PRK13795 577 LRRAAECVGCGVCVGACPTGAIRIEE 602 (636)
T ss_pred EEccccCCCHhHHHHhCCcccEEeec
Confidence 45677899999999999999997654
No 257
>PRK00783 DNA-directed RNA polymerase subunit D; Provisional
Probab=90.27 E-value=0.14 Score=43.54 Aligned_cols=24 Identities=29% Similarity=0.578 Sum_probs=21.0
Q ss_pred CCCCCcchhhhhcCcccccccCCC
Q 027264 163 MTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
.+.|.+|+.|+.+||.+++.+++.
T Consensus 168 ~~~C~~C~~C~~~CP~~vi~~~~~ 191 (263)
T PRK00783 168 SEDCDECEKCVEACPRGVLELKEG 191 (263)
T ss_pred cccCCchHHHHHhCCccccEecCC
Confidence 578999999999999999987653
No 258
>COG1600 Uncharacterized Fe-S protein [Energy production and conversion]
Probab=89.59 E-value=0.14 Score=45.02 Aligned_cols=21 Identities=38% Similarity=0.858 Sum_probs=18.8
Q ss_pred CCCCcchhhhhcCcccccccC
Q 027264 164 TKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
+.|-.|..|+++||++||.-.
T Consensus 185 ~~Cg~C~~CldaCPt~Al~~~ 205 (337)
T COG1600 185 DHCGSCTRCLDACPTGALVAP 205 (337)
T ss_pred ccChhhHHHHhhCCcccccCC
Confidence 689999999999999999743
No 259
>PRK07860 NADH dehydrogenase subunit G; Validated
Probab=89.41 E-value=0.17 Score=49.67 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=17.9
Q ss_pred cccccccchhccccccccchh
Q 027264 126 RCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.|..||.|+.+||++||....
T Consensus 191 ~~~~cG~cv~vCP~GAl~~k~ 211 (797)
T PRK07860 191 QSYFSGNTVQICPVGALTGAA 211 (797)
T ss_pred CccccCCchhhCCcccccccc
Confidence 478899999999999997543
No 260
>PRK09129 NADH dehydrogenase subunit G; Validated
Probab=88.49 E-value=0.25 Score=48.37 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=17.8
Q ss_pred cccccccchhccccccccchh
Q 027264 126 RCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.|.-||.|+.+||++||....
T Consensus 185 ~~~~cg~cv~~CP~GAl~~k~ 205 (776)
T PRK09129 185 DSELSGNMIDLCPVGALTSKP 205 (776)
T ss_pred cCcccCCchhhCCcccccccc
Confidence 467799999999999997553
No 261
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=88.26 E-value=0.25 Score=47.68 Aligned_cols=21 Identities=19% Similarity=0.262 Sum_probs=17.9
Q ss_pred cccccccchhccccccccchh
Q 027264 126 RCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.|..||.|+.+||++||...+
T Consensus 186 ~~~~~G~cv~~CPvgAl~~k~ 206 (687)
T PRK09130 186 TSELSGNVIDLCPVGALTSKP 206 (687)
T ss_pred cccccccHHhhCCCccccccc
Confidence 477899999999999998544
No 262
>PRK08166 NADH dehydrogenase subunit G; Validated
Probab=87.97 E-value=0.19 Score=49.61 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=18.2
Q ss_pred cccccccchhccccccccchh
Q 027264 126 RCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.|..||.|+.+||++||.-..
T Consensus 190 ~~~~~G~cv~vCP~GAl~~k~ 210 (847)
T PRK08166 190 ESEFSGNLVEVCPTGVFTDKT 210 (847)
T ss_pred cChhhCChHhhCCchhccccc
Confidence 578899999999999997654
No 263
>cd07030 RNAP_D D subunit of Archaeal RNA polymerase. The D subunit of archaeal RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The D subunit is equivalent to the RPB3 subunit of eukaryotic RNAP II. It contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit w
Probab=87.65 E-value=0.24 Score=41.93 Aligned_cols=23 Identities=30% Similarity=0.681 Sum_probs=20.2
Q ss_pred CCCCcchhhhhcCcccccccCCC
Q 027264 164 TKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
+.|.+|+.|+.+||.+++..++.
T Consensus 169 ~~C~~C~~C~~~CP~~vi~~d~~ 191 (259)
T cd07030 169 EDCDGCGKCVEECPRGVLELEEG 191 (259)
T ss_pred hhCCChHHHHHhCCccceEccCC
Confidence 67999999999999999986553
No 264
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=86.85 E-value=0.25 Score=47.71 Aligned_cols=21 Identities=38% Similarity=0.985 Sum_probs=18.2
Q ss_pred CCCCCCcchhhhhcCcccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
....|+.||.|+.+||.+.+.
T Consensus 368 ~e~~CI~CG~Cv~aCP~~llP 388 (695)
T PRK05035 368 PEQPCIRCGACADACPASLLP 388 (695)
T ss_pred chhhcCCcccHHHHCCccchh
Confidence 346799999999999999874
No 265
>COG1035 FrhB Coenzyme F420-reducing hydrogenase, beta subunit [Energy production and conversion]
Probab=86.46 E-value=0.33 Score=42.62 Aligned_cols=25 Identities=44% Similarity=0.882 Sum_probs=20.3
Q ss_pred cCCCCCCcchhhhhcCcccccccCCC
Q 027264 161 IDMTKCIYCGFCQEACPVDAIVEGPN 186 (226)
Q Consensus 161 ~d~~~C~~Cg~Cv~~CP~~Ai~~~~~ 186 (226)
++.+.|+.||.|+.+||. +|.....
T Consensus 2 ~~~~~c~~Cg~C~a~cp~-~i~~~~~ 26 (332)
T COG1035 2 IDAGLCTGCGTCAAVCPY-AITERDE 26 (332)
T ss_pred CcCcccccchhhHhhCCc-eEEEecc
Confidence 345789999999999999 8875544
No 266
>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated
Probab=86.45 E-value=0.28 Score=41.40 Aligned_cols=21 Identities=43% Similarity=0.986 Sum_probs=17.9
Q ss_pred cCCCCCCcchhhhhcCccccc
Q 027264 161 IDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 161 ~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.+...|+.||.|+.+||+...
T Consensus 154 ~~~~~CI~CG~C~saCP~~~~ 174 (250)
T PRK07570 154 FDAAACIGCGACVAACPNGSA 174 (250)
T ss_pred hCccccCCCcccccccCCccc
Confidence 456789999999999999863
No 267
>TIGR03290 CoB_CoM_SS_C CoB--CoM heterodisulfide reductase, subunit C. The last step in methanogenesis leaves two coenzymes of methanogenesis, CoM and CoB, linked by a disulfide bond. Members of this protein family are the C subunit of the enzyme that reduces the heterodisulfide to CoB-SH and CoM-SH. Similar enzyme complex subunits are found in various other species, but likely act on a different substrate.
Probab=86.45 E-value=0.26 Score=37.83 Aligned_cols=16 Identities=38% Similarity=1.138 Sum_probs=14.5
Q ss_pred CCCCcchhhhhcCccc
Q 027264 164 TKCIYCGFCQEACPVD 179 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~ 179 (226)
..|+.||.|..+||+.
T Consensus 2 ~~Ci~CG~C~~~CP~~ 17 (144)
T TIGR03290 2 KACYQCGTCTGSCPSG 17 (144)
T ss_pred ccccCCCCCcCcCCCc
Confidence 4699999999999985
No 268
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=85.99 E-value=0.3 Score=49.02 Aligned_cols=21 Identities=24% Similarity=0.705 Sum_probs=18.6
Q ss_pred cccccccchhccccccccchh
Q 027264 126 RCIACKLCEAVCPAQAITIEA 146 (226)
Q Consensus 126 ~Ci~Cg~C~~~CP~~ai~~~~ 146 (226)
.|++||.|+.+||++++.+..
T Consensus 922 ~C~~CG~C~~vCP~~a~~~~g 942 (1012)
T TIGR03315 922 MCNECGNCATFCPYDGAPYKD 942 (1012)
T ss_pred cccccchHHHhCCCCccccee
Confidence 399999999999999887754
No 269
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=85.68 E-value=1 Score=41.94 Aligned_cols=72 Identities=24% Similarity=0.146 Sum_probs=41.4
Q ss_pred hhHhhhhccCCcccCcccccCCCCCCCCCchhH--HHHHHHHHHHhhhHHHHHHHHH---------HHh----hhHHHHH
Q 027264 18 LAVSGQALQGSQHYGLRFNAHPYSSYFPSKKDD--EEKEQLLKEISKDWSSVFERSI---------NML----FLTEMVR 82 (226)
Q Consensus 18 ~~i~Gha~~gn~~~~~~~~~H~~~~~~~~~~p~--~~~~~~~~~~~~~v~~~~~~~i---------~~~----~~~~~~~ 82 (226)
..++||+++|| .|.+.. +....+. ++..++.+++.+.+. ++.+++ +.. .+.+...
T Consensus 381 ~~~~gH~GdGn--------~H~~i~-~~~~~~~~~~~~~~~~~~l~~~~~-~~GG~is~EHGiG~~k~~~l~~~~g~~~~ 450 (499)
T PRK11230 381 VANVFHAGDGN--------MHPLIL-FDANEPGELERAEALGGKILELCV-EVGGSITGEHGVGREKINQMCAQFNSDEI 450 (499)
T ss_pred EEEEEEeCCCc--------ceeeec-CCCCCHHHHHHHHHHHHHHHHHHH-HcCCeEeeeccCchhhHHHHHHhcCHHHH
Confidence 78899999999 999532 2222221 233333334433322 222211 111 1123568
Q ss_pred HHHHHHHHhcCCcceec
Q 027264 83 GLGLTLKYFFDKKVTIN 99 (226)
Q Consensus 83 ~l~~~~~~~f~~~~~~~ 99 (226)
.++..+|..|||...+|
T Consensus 451 ~~m~~IK~~fDP~~iLN 467 (499)
T PRK11230 451 TLFHAVKAAFDPDGLLN 467 (499)
T ss_pred HHHHHHHHHcCCCcCCC
Confidence 88999999999999998
No 270
>TIGR02910 sulfite_red_A sulfite reductase, subunit A. Members of this protein family include the A subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum. Note that any one of these enzymes may have secondary substates such as NH2OH, SeO3(2-), and SO3(2-). Heterologous expression of the anaerobic sulfite reductase of Salmonella confers on Escherichia coli the ability to produce hydrogen sulfide gas from sulfite.
Probab=85.14 E-value=0.35 Score=42.51 Aligned_cols=18 Identities=33% Similarity=1.115 Sum_probs=16.0
Q ss_pred ccccccccccchhccccc
Q 027264 123 GEERCIACKLCEAVCPAQ 140 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ 140 (226)
....|++||.|..+||++
T Consensus 299 G~~~CvgCGrC~~~CP~~ 316 (334)
T TIGR02910 299 GYHMCVGCGRCDDICPEY 316 (334)
T ss_pred CccccCCcCchhhhCCCC
Confidence 456799999999999986
No 271
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=85.11 E-value=0.48 Score=45.46 Aligned_cols=20 Identities=25% Similarity=0.728 Sum_probs=16.0
Q ss_pred ccccCCCCCCcchhhhhcCc
Q 027264 158 RYDIDMTKCIYCGFCQEACP 177 (226)
Q Consensus 158 ~~~~d~~~C~~Cg~Cv~~CP 177 (226)
.+..|.++|+.||.|+.+|.
T Consensus 610 ~i~~D~~kCI~CgrCv~~C~ 629 (652)
T PRK12814 610 DIRFEREKCVDCGICVRTLE 629 (652)
T ss_pred CeEeccccccCchHHHHHHH
Confidence 35578899999999996664
No 272
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=84.66 E-value=0.33 Score=46.08 Aligned_cols=20 Identities=35% Similarity=0.981 Sum_probs=17.0
Q ss_pred Cccccccccccchhccccccc
Q 027264 122 TGEERCIACKLCEAVCPAQAI 142 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~~ai 142 (226)
++. .|+.||.|+.+||.+||
T Consensus 576 i~~-~C~~Cg~C~~~CP~~Ai 595 (595)
T TIGR03336 576 IDP-LCTGCGVCAQICPFDAI 595 (595)
T ss_pred eCC-CCcCHHHHHhhCccccC
Confidence 344 79999999999999875
No 273
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=83.14 E-value=0.45 Score=47.74 Aligned_cols=22 Identities=23% Similarity=0.662 Sum_probs=18.7
Q ss_pred cccccccccchhccccccccch
Q 027264 124 EERCIACKLCEAVCPAQAITIE 145 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~~~ 145 (226)
.+.|++||.|+.+||+.+-++.
T Consensus 925 ~~~C~~CG~C~~~CP~~~~py~ 946 (1019)
T PRK09853 925 DAMCNECGNCAQFCPWNGKPYK 946 (1019)
T ss_pred CccCccccchhhhCCCCCCccc
Confidence 5899999999999999765543
No 274
>PRK15055 anaerobic sulfite reductase subunit A; Provisional
Probab=82.69 E-value=0.5 Score=41.74 Aligned_cols=17 Identities=29% Similarity=0.952 Sum_probs=15.3
Q ss_pred cccccccccchhccccc
Q 027264 124 EERCIACKLCEAVCPAQ 140 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ 140 (226)
...|++||.|..+||++
T Consensus 306 ~~~CvgCGrC~~~CP~~ 322 (344)
T PRK15055 306 YHMCVGCGRCDDRCPEY 322 (344)
T ss_pred hhhCcCcCccccccCCC
Confidence 45799999999999986
No 275
>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=82.27 E-value=0.5 Score=40.57 Aligned_cols=20 Identities=55% Similarity=1.373 Sum_probs=17.1
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
+...|+.||.|+.+||..+.
T Consensus 150 ~~~~CI~CG~C~~~CP~~~~ 169 (279)
T PRK12576 150 KFAQCIWCGLCVSACPVVAI 169 (279)
T ss_pred cchhCcccCcccccCCCccc
Confidence 44689999999999998755
No 276
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=82.20 E-value=0.59 Score=42.66 Aligned_cols=20 Identities=35% Similarity=1.026 Sum_probs=17.2
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|+.+||.+.+
T Consensus 361 ~~~~Ci~Cg~C~~vCP~~l~ 380 (435)
T TIGR01945 361 PEKPCIRCGKCVQVCPMNLL 380 (435)
T ss_pred cCCcCcCccchhhhCccchh
Confidence 44689999999999999855
No 277
>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein. Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.
Probab=81.96 E-value=0.46 Score=39.17 Aligned_cols=20 Identities=35% Similarity=0.954 Sum_probs=17.0
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|+.+||+...
T Consensus 136 ~~~~Ci~CG~C~~~CP~~~~ 155 (220)
T TIGR00384 136 QLSGCILCGCCYSSCPAFWW 155 (220)
T ss_pred hhhhccccccccccCCCCcc
Confidence 45789999999999998744
No 278
>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=81.90 E-value=0.5 Score=39.85 Aligned_cols=20 Identities=45% Similarity=1.107 Sum_probs=16.8
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|..+||+...
T Consensus 150 ~~~~CI~CG~C~saCP~~~~ 169 (249)
T PRK08640 150 ELSKCMTCGCCLEACPNVNE 169 (249)
T ss_pred hhhhccCcCcccccCCCCcc
Confidence 45679999999999997753
No 279
>TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit. This model describes the alpha subunit of sulfite reductase.
Probab=81.33 E-value=0.54 Score=42.47 Aligned_cols=26 Identities=19% Similarity=0.498 Sum_probs=21.2
Q ss_pred cCCCccccccccccchhccccccccch
Q 027264 119 RYPTGEERCIACKLCEAVCPAQAITIE 145 (226)
Q Consensus 119 ~~~~~~~~Ci~Cg~C~~~CP~~ai~~~ 145 (226)
.+.++.++|+.|+.|+++||. |+...
T Consensus 266 ~~~id~~~C~~Cm~Ci~~~p~-a~~~g 291 (402)
T TIGR02064 266 ELSIDNRECVRCMHCINKMPK-ALHPG 291 (402)
T ss_pred eEEEcchhcCcCccccccCcc-cccCC
Confidence 345778899999999999997 66654
No 280
>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]
Probab=80.93 E-value=0.29 Score=40.06 Aligned_cols=55 Identities=22% Similarity=0.562 Sum_probs=32.9
Q ss_pred ccccccccchhccccccccchh---------------hhhccCCccccccc---cCCCCCCcchhhhhcCccc
Q 027264 125 ERCIACKLCEAVCPAQAITIEA---------------EEREDGSRRTTRYD---IDMTKCIYCGFCQEACPVD 179 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~~~~---------------~~~~~~~~~~~~~~---~d~~~C~~Cg~Cv~~CP~~ 179 (226)
-.||.|..|...||+.....+. +.|........... .....|-.=.+|.+.||.|
T Consensus 192 YECILCACCsTSCPSYWWN~ekYLGPAvLmqAyRWiiDSRD~~t~eRl~~l~d~~slyrCHtImNCtrtCPKg 264 (288)
T KOG3049|consen 192 YECILCACCSTSCPSYWWNSEKYLGPAVLMQAYRWIIDSRDEATKERLAKLQDPFSLYRCHTIMNCTRTCPKG 264 (288)
T ss_pred HHHHHHHHhcCCCcccccCcccccCHHHHHHHHhhhhcchhHHHHHHHHHhcCchhheehhhhhhhhhcCCCC
Confidence 3599999999999985443221 11110000111111 2235688889999999998
No 281
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=80.56 E-value=0.53 Score=42.96 Aligned_cols=19 Identities=47% Similarity=1.162 Sum_probs=16.1
Q ss_pred CCCCCCcchhhhhcCcccc
Q 027264 162 DMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~A 180 (226)
+...|+.||.|..+||+-.
T Consensus 291 e~~~CIrCG~C~~~CPvy~ 309 (432)
T TIGR00273 291 EVLACIRCGACQNECPVYR 309 (432)
T ss_pred hHhhCCCCCCccccCcchh
Confidence 4568999999999999754
No 282
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=80.20 E-value=0.88 Score=40.37 Aligned_cols=18 Identities=33% Similarity=0.929 Sum_probs=15.8
Q ss_pred ccccccccccchhccccc
Q 027264 123 GEERCIACKLCEAVCPAQ 140 (226)
Q Consensus 123 ~~~~Ci~Cg~C~~~CP~~ 140 (226)
....|++||.|.+.||..
T Consensus 349 ~as~CieCgqCl~~CPq~ 366 (391)
T COG1453 349 KASDCIECGQCLEKCPQH 366 (391)
T ss_pred cccccchhhhhhhcCCCc
Confidence 357899999999999985
No 283
>PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional
Probab=79.97 E-value=0.64 Score=41.57 Aligned_cols=20 Identities=40% Similarity=1.031 Sum_probs=17.3
Q ss_pred CCCCCcchhhhhcCcccccc
Q 027264 163 MTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
...|+.||.|..+||+-.+.
T Consensus 6 ~~~Ci~Cg~C~~~CP~~~~~ 25 (396)
T PRK11168 6 FDSCIKCTVCTTACPVARVN 25 (396)
T ss_pred hhhcCCCCCCCccCCCcccC
Confidence 46799999999999998764
No 284
>PRK12386 fumarate reductase iron-sulfur subunit; Provisional
Probab=79.51 E-value=0.67 Score=39.15 Aligned_cols=20 Identities=40% Similarity=0.835 Sum_probs=16.7
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|..+||+-..
T Consensus 140 ~~~~CI~CG~C~s~CPv~~~ 159 (251)
T PRK12386 140 EFRKCIECFLCQNVCHVVRD 159 (251)
T ss_pred chhhcccCCcccCcCCcccc
Confidence 45679999999999997654
No 285
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=78.59 E-value=0.72 Score=41.65 Aligned_cols=15 Identities=53% Similarity=1.373 Sum_probs=13.5
Q ss_pred CCCcchhhhhcCccc
Q 027264 165 KCIYCGFCQEACPVD 179 (226)
Q Consensus 165 ~C~~Cg~Cv~~CP~~ 179 (226)
.|+.||+|...||+=
T Consensus 309 ~CIRCGaC~n~CPvY 323 (459)
T COG1139 309 RCIRCGACLNHCPVY 323 (459)
T ss_pred HhhcchHhhhcChhh
Confidence 599999999999963
No 286
>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional
Probab=77.98 E-value=0.82 Score=38.30 Aligned_cols=20 Identities=35% Similarity=1.056 Sum_probs=16.3
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|..+||+-..
T Consensus 147 ~~~~CI~Cg~C~saCP~~~~ 166 (239)
T PRK13552 147 ELDRCIECGCCVAACGTKQM 166 (239)
T ss_pred chhhccccchhHhhCCCCcc
Confidence 45679999999999996543
No 287
>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional
Probab=77.76 E-value=0.86 Score=39.21 Aligned_cols=19 Identities=21% Similarity=0.530 Sum_probs=16.3
Q ss_pred ccCCCCCCcchhhhhcCcc
Q 027264 160 DIDMTKCIYCGFCQEACPV 178 (226)
Q Consensus 160 ~~d~~~C~~Cg~Cv~~CP~ 178 (226)
.+|...|+.||+|+.+|-.
T Consensus 208 ~~D~nKCIlCgRCVRaC~E 226 (297)
T PTZ00305 208 RVVLNRCIHCTRCVRFLNE 226 (297)
T ss_pred eecCCcCcCccHHHHHHHH
Confidence 4567899999999999974
No 288
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=77.16 E-value=0.92 Score=41.91 Aligned_cols=17 Identities=47% Similarity=1.378 Sum_probs=15.4
Q ss_pred CCCcchhhhhcCccccc
Q 027264 165 KCIYCGFCQEACPVDAI 181 (226)
Q Consensus 165 ~C~~Cg~Cv~~CP~~Ai 181 (226)
.|+.|+.|+++||++=+
T Consensus 366 sCi~C~~C~d~CP~~Ll 382 (529)
T COG4656 366 SCIRCSLCADACPVNLL 382 (529)
T ss_pred ccccHHHHHHhCccccC
Confidence 79999999999999844
No 289
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=76.86 E-value=1.6 Score=38.91 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=48.7
Q ss_pred hhHhhhhccCCcccCcccccCCCCCCCCCchhHHHHHHHHHHHhhhHHHHHHHHHHHhh-------------hHHHHHHH
Q 027264 18 LAVSGQALQGSQHYGLRFNAHPYSSYFPSKKDDEEKEQLLKEISKDWSSVFERSINMLF-------------LTEMVRGL 84 (226)
Q Consensus 18 ~~i~Gha~~gn~~~~~~~~~H~~~~~~~~~~p~~~~~~~~~~~~~~v~~~~~~~i~~~~-------------~~~~~~~l 84 (226)
++-|||-+||| +|-+ ++..+-+++.++.++-+.=....+..+++.... -.+....+
T Consensus 423 ~~gyGHlGDgN--------lHLN---ia~~efn~~iek~lePfvYE~vs~~~GSISAEHGiG~lKk~~~~ysKspe~i~l 491 (511)
T KOG1232|consen 423 IVGYGHLGDGN--------LHLN---IAVREFNKEIEKLLEPFVYEWVSKHKGSISAEHGIGFLKKPYLHYSKSPEEILL 491 (511)
T ss_pred ccccccccCCc--------eeEe---eeHHHHhHHHHHhhhhHHHHHHHhcCCceeccccccccccCccccCCCHHHHHH
Confidence 45599999999 8874 566666677777777655444444444443111 12357889
Q ss_pred HHHHHHhcCCcceec
Q 027264 85 GLTLKYFFDKKVTIN 99 (226)
Q Consensus 85 ~~~~~~~f~~~~~~~ 99 (226)
|.++|..|+|..++|
T Consensus 492 mk~lKn~~DPngILn 506 (511)
T KOG1232|consen 492 MKDLKNLFDPNGILN 506 (511)
T ss_pred HHHHHhhcCCcccCC
Confidence 999999999988887
No 290
>COG1150 HdrC Heterodisulfide reductase, subunit C [Energy production and conversion]
Probab=76.70 E-value=0.81 Score=36.94 Aligned_cols=19 Identities=32% Similarity=0.999 Sum_probs=16.6
Q ss_pred CCCCCcchhhhhcCccccc
Q 027264 163 MTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai 181 (226)
...|..||.|...||.+-.
T Consensus 38 l~~C~QCG~CT~sCPs~r~ 56 (195)
T COG1150 38 LEGCYQCGTCTGSCPSGRF 56 (195)
T ss_pred HhHhhccCcccCCCCCccc
Confidence 5679999999999999844
No 291
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=75.81 E-value=1.1 Score=41.07 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=15.8
Q ss_pred CCCCcchhhhhcCccccc
Q 027264 164 TKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai 181 (226)
..|+.||.|+++||.+-+
T Consensus 373 ~aCI~CG~C~~vCPm~L~ 390 (447)
T TIGR01936 373 RAMIPIGIYERVMPLDIP 390 (447)
T ss_pred cceeECChHhhcCCCCCC
Confidence 469999999999999944
No 292
>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=75.55 E-value=0.87 Score=38.09 Aligned_cols=20 Identities=35% Similarity=0.879 Sum_probs=16.5
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|..+||+-..
T Consensus 142 ~~~~CI~CG~C~s~CP~~~~ 161 (235)
T PRK12575 142 GLYECILCACCSTACPSYWW 161 (235)
T ss_pred hhhhCcccccccccccCccc
Confidence 34579999999999997644
No 293
>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit
Probab=75.38 E-value=1 Score=38.63 Aligned_cols=17 Identities=35% Similarity=0.987 Sum_probs=14.8
Q ss_pred CCCCcchhhhhcCcccc
Q 027264 164 TKCIYCGFCQEACPVDA 180 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~A 180 (226)
..|+.||.|..+||+-.
T Consensus 187 ~~CI~CG~C~saCPv~~ 203 (276)
T PLN00129 187 YECILCACCSTSCPSYW 203 (276)
T ss_pred hhCccccccccccCCCc
Confidence 46999999999999653
No 294
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=74.38 E-value=1.2 Score=40.79 Aligned_cols=18 Identities=17% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCCCCcchhhhhcCcccc
Q 027264 163 MTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~A 180 (226)
...|+.||.|+++||.+-
T Consensus 373 ~~~CI~Cg~C~~vCP~~L 390 (448)
T PRK05352 373 ERAMVPIGNYERVMPLDI 390 (448)
T ss_pred CcceeecCcHhhcCCCCC
Confidence 357999999999999973
No 295
>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]
Probab=74.35 E-value=1.5 Score=42.34 Aligned_cols=18 Identities=39% Similarity=0.949 Sum_probs=16.2
Q ss_pred cCCCCCCcchhhhhcCcc
Q 027264 161 IDMTKCIYCGFCQEACPV 178 (226)
Q Consensus 161 ~d~~~C~~Cg~Cv~~CP~ 178 (226)
.+...|+.|++||++|-.
T Consensus 141 ~dm~RCI~C~RCVR~c~e 158 (693)
T COG1034 141 YDMNRCILCTRCVRFCKE 158 (693)
T ss_pred cccccceechhhHHhhhh
Confidence 778899999999999964
No 296
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=74.32 E-value=0.8 Score=42.08 Aligned_cols=22 Identities=27% Similarity=0.785 Sum_probs=17.1
Q ss_pred cccccccccc--chhccccccccc
Q 027264 123 GEERCIACKL--CEAVCPAQAITI 144 (226)
Q Consensus 123 ~~~~Ci~Cg~--C~~~CP~~ai~~ 144 (226)
..++|..|+. |+..||.+....
T Consensus 42 ~a~rc~~c~~~~C~~~CP~~~~~~ 65 (471)
T PRK12810 42 QAARCMDCGIPFCHWGCPVHNYIP 65 (471)
T ss_pred HHHhccCCCCCcccccCCCCCcHH
Confidence 3578999975 999999875543
No 297
>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed
Probab=74.02 E-value=1.4 Score=36.72 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.5
Q ss_pred cccccccccchhcccccc
Q 027264 124 EERCIACKLCEAVCPAQA 141 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~a 141 (226)
...|+.||.|..+||.+.
T Consensus 197 i~~C~~Cg~C~~~CP~gi 214 (232)
T PRK05950 197 VFRCHTIMNCVEVCPKGL 214 (232)
T ss_pred cccCcCcCCcCccccCCC
Confidence 358999999999999863
No 298
>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]
Probab=73.88 E-value=1.1 Score=37.31 Aligned_cols=21 Identities=38% Similarity=0.952 Sum_probs=17.1
Q ss_pred cCCCCCCcchhhhhcCccccc
Q 027264 161 IDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 161 ~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.....|+.||.|..+||.-..
T Consensus 139 ~~~~~CI~Cg~C~s~CP~~~~ 159 (234)
T COG0479 139 DELSECILCGCCTAACPSIWW 159 (234)
T ss_pred HhhhhccccchhhhhCCcccc
Confidence 345789999999999997644
No 299
>TIGR03379 glycerol3P_GlpC glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species.
Probab=73.48 E-value=1.3 Score=39.77 Aligned_cols=18 Identities=39% Similarity=0.968 Sum_probs=15.6
Q ss_pred CCCCcchhhhhcCccccc
Q 027264 164 TKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 164 ~~C~~Cg~Cv~~CP~~Ai 181 (226)
..|+.||.|..+||+-..
T Consensus 5 ~~Ci~Cg~C~~~Cp~~~~ 22 (397)
T TIGR03379 5 ESCIKCTVCTVYCPVAKA 22 (397)
T ss_pred hhCCCCCCCcccCcCccc
Confidence 579999999999997644
No 300
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=73.37 E-value=1.3 Score=37.12 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=15.2
Q ss_pred cccccccccchhccccc
Q 027264 124 EERCIACKLCEAVCPAQ 140 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ 140 (226)
...|+.||.|..+||.+
T Consensus 202 l~~C~~C~~C~~vCP~~ 218 (244)
T PRK12385 202 VWSCTFVGYCSEVCPKH 218 (244)
T ss_pred hhhCcCcccccccCCCC
Confidence 34899999999999986
No 301
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=73.33 E-value=0.91 Score=41.73 Aligned_cols=18 Identities=39% Similarity=1.093 Sum_probs=15.6
Q ss_pred ccccccccc--cchhccccc
Q 027264 123 GEERCIACK--LCEAVCPAQ 140 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~ 140 (226)
..++|+.|+ .|...||.+
T Consensus 38 ~~~~c~~c~~~~C~~~CP~~ 57 (467)
T TIGR01318 38 QADRCLYCGNPYCEWKCPVH 57 (467)
T ss_pred HHHhcccCCCccccccCCCC
Confidence 367999998 699999985
No 302
>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional
Probab=73.05 E-value=1.2 Score=39.09 Aligned_cols=19 Identities=32% Similarity=0.945 Sum_probs=15.8
Q ss_pred CCCCCcchhhhhcCccccc
Q 027264 163 MTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai 181 (226)
...|+.||.|..+||+-..
T Consensus 151 ~~~Ci~CG~C~s~CP~~~~ 169 (329)
T PRK12577 151 TGNCILCGACYSECNAREV 169 (329)
T ss_pred hhhCcccCcccccCCCCCc
Confidence 3569999999999997644
No 303
>COG1152 CdhA CO dehydrogenase/acetyl-CoA synthase alpha subunit [Energy production and conversion]
Probab=70.68 E-value=1.4 Score=41.33 Aligned_cols=17 Identities=47% Similarity=1.234 Sum_probs=15.3
Q ss_pred cccccccccchhccccc
Q 027264 124 EERCIACKLCEAVCPAQ 140 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ 140 (226)
.+.|++||+|+.+||.+
T Consensus 437 ~d~C~~C~rCEq~Cpk~ 453 (772)
T COG1152 437 HDVCIGCGRCEQVCPKN 453 (772)
T ss_pred HHHhhhhhhhhhhCccc
Confidence 57899999999999964
No 304
>cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=69.61 E-value=1.5 Score=42.45 Aligned_cols=19 Identities=42% Similarity=1.041 Sum_probs=16.2
Q ss_pred CCCCCCcchhhhhcCcccc
Q 027264 162 DMTKCIYCGFCQEACPVDA 180 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~A 180 (226)
....|+.||.|+.+||.+.
T Consensus 363 ~~~kCI~CG~Cv~aCP~~l 381 (731)
T cd01916 363 LAAKCTDCGWCTRACPNSL 381 (731)
T ss_pred hhhcCCCCCcccccCCCCC
Confidence 3467999999999999873
No 305
>TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Acetyl-CoA decarbonylase/synthase (ACDS) is a multienzyme complex. Carbon monoxide dehydrogenase is a synonym. The ACDS complex carries out an unusual reaction involving the reversible cleavage and synthesis of acetyl-CoA in methanogens. The model contains the prosite signature for 4Fe-4S ferredoxins [C-x(2)-C-x(2)-C-x(3)-C-[PEG]] between residues 448-462 of the model.
Probab=69.10 E-value=1.9 Score=42.06 Aligned_cols=17 Identities=41% Similarity=1.089 Sum_probs=15.6
Q ss_pred CCCCCcchhhhhcCccc
Q 027264 163 MTKCIYCGFCQEACPVD 179 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~ 179 (226)
...|+.||.|+.+||.+
T Consensus 398 ~~kCI~CG~Cv~aCP~~ 414 (784)
T TIGR00314 398 ANKCTQCGNCVRTCPNS 414 (784)
T ss_pred cccCCCcccchhhCCCC
Confidence 47899999999999987
No 306
>PRK11274 glcF glycolate oxidase iron-sulfur subunit; Provisional
Probab=66.90 E-value=2.4 Score=38.13 Aligned_cols=17 Identities=41% Similarity=1.284 Sum_probs=15.3
Q ss_pred cccccccccchhccccc
Q 027264 124 EERCIACKLCEAVCPAQ 140 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ 140 (226)
.+.|+.|+.|..+||++
T Consensus 72 ~~~C~~C~~C~~~CP~~ 88 (407)
T PRK11274 72 LDRCLTCRNCETTCPSG 88 (407)
T ss_pred cccCccccchhhhCCCC
Confidence 46899999999999985
No 307
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=66.75 E-value=2.1 Score=41.81 Aligned_cols=18 Identities=44% Similarity=1.180 Sum_probs=16.0
Q ss_pred cccccccccchhcccccc
Q 027264 124 EERCIACKLCEAVCPAQA 141 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~a 141 (226)
.+.|+.||.|+.+||++.
T Consensus 441 ~~~Ct~CG~CeeVCPtgI 458 (781)
T PRK00941 441 YDKCIGCGRCEQVCPKNI 458 (781)
T ss_pred hhhccchhHHhhhCCCCC
Confidence 468999999999999864
No 308
>PRK15033 tricarballylate utilization protein B; Provisional
Probab=66.23 E-value=2.2 Score=38.22 Aligned_cols=16 Identities=25% Similarity=0.708 Sum_probs=14.8
Q ss_pred cccccccccchhcccc
Q 027264 124 EERCIACKLCEAVCPA 139 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~ 139 (226)
.+.|..||.|...||.
T Consensus 66 a~~C~~Cg~C~~~CP~ 81 (389)
T PRK15033 66 ANLCHNCGACLHACQY 81 (389)
T ss_pred HHhCcCcccccccCcC
Confidence 4689999999999998
No 309
>COG2440 FixX Ferredoxin-like protein [Energy production and conversion]
Probab=66.11 E-value=2 Score=30.79 Aligned_cols=24 Identities=29% Similarity=0.728 Sum_probs=19.0
Q ss_pred CCccccccccccchhcccc-ccccc
Q 027264 121 PTGEERCIACKLCEAVCPA-QAITI 144 (226)
Q Consensus 121 ~~~~~~Ci~Cg~C~~~CP~-~ai~~ 144 (226)
.++.+.|.+||.|--+||. +.+..
T Consensus 61 ~~~yegClECGTCRvlc~~~~~i~W 85 (99)
T COG2440 61 RFDYEGCLECGTCRVLCPHSGLIQW 85 (99)
T ss_pred EEeecCeeeccceeEecCCCcceEE
Confidence 3557889999999999997 55543
No 310
>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional
Probab=66.01 E-value=2.3 Score=39.23 Aligned_cols=20 Identities=30% Similarity=0.858 Sum_probs=16.9
Q ss_pred CCCCCCcchhhhhcCccccc
Q 027264 162 DMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
....|+.||.|..+||+-..
T Consensus 131 ~~~~Ci~CG~C~~~CP~~~~ 150 (486)
T PRK06259 131 KLRGCIECLSCVSTCPARKV 150 (486)
T ss_pred CchhcccCccccccCCCCcc
Confidence 34679999999999998754
No 311
>COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion]
Probab=65.64 E-value=2.1 Score=37.93 Aligned_cols=20 Identities=40% Similarity=1.163 Sum_probs=17.3
Q ss_pred CCCCCcchhhhhcCcccccc
Q 027264 163 MTKCIYCGFCQEACPVDAIV 182 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~Ai~ 182 (226)
.+.|+.||.|..+||+-...
T Consensus 8 ~~~Cv~Cg~C~~~CP~~~~~ 27 (388)
T COG0247 8 LDKCVHCGFCTNVCPSYRAT 27 (388)
T ss_pred HHhcCCCCcccCcCCCcccc
Confidence 36799999999999988665
No 312
>COG1941 FrhG Coenzyme F420-reducing hydrogenase, gamma subunit [Energy production and conversion]
Probab=63.95 E-value=3.2 Score=34.66 Aligned_cols=21 Identities=38% Similarity=0.865 Sum_probs=19.1
Q ss_pred CCCcchhhhhcCcccccccCC
Q 027264 165 KCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 165 ~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
.|.+|+.|...||..||....
T Consensus 191 ~C~G~~TC~A~CP~~ai~c~G 211 (247)
T COG1941 191 PCMGCGTCAASCPSRAIPCRG 211 (247)
T ss_pred cccCchhhhccCCccCCcccC
Confidence 799999999999999998654
No 313
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=62.69 E-value=2 Score=39.51 Aligned_cols=21 Identities=29% Similarity=0.759 Sum_probs=16.8
Q ss_pred ccccccccc-cchhcccccccc
Q 027264 123 GEERCIACK-LCEAVCPAQAIT 143 (226)
Q Consensus 123 ~~~~Ci~Cg-~C~~~CP~~ai~ 143 (226)
..++|..|+ .|...||.....
T Consensus 21 ~a~rCl~C~~~C~~~cp~~~~I 42 (457)
T COG0493 21 EAARCLDCGDPCITGCPVHNDI 42 (457)
T ss_pred HHHHHHcCCCccccCCcCCCcC
Confidence 357999999 699999986443
No 314
>COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only]
Probab=59.24 E-value=3.7 Score=36.74 Aligned_cols=52 Identities=17% Similarity=0.294 Sum_probs=33.7
Q ss_pred ccccccccchhccccc--cccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 125 ERCIACKLCEAVCPAQ--AITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~--ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
++|+.|+.| ++|-.. .+.+. .....+.+-..+|..|.-|+..||..++...+
T Consensus 2 s~~~~~~~~-k~~~~~~g~~ei~--------~~~~~~~~~lsdc~~c~gci~s~~~~li~~~s 55 (411)
T COG4624 2 KPLQVVSVE-KDDETYDGKYEIS--------SMLEKISISLSDCLACSGCITSCEVKAISLQS 55 (411)
T ss_pred CccccCccc-cccccccceEEEe--------ecccccccchhhhhhhhccccCChHHhhhhcc
Confidence 579999999 888752 12211 11112345567788888899988888776544
No 315
>PF06902 Fer4_19: Divergent 4Fe-4S mono-cluster; InterPro: IPR010693 This entry represents bacterial ferredoxins such Ferredoxin-1, -2 and -soy from Streptomyces griseolus and Ferredoxin fas2 from Rhodococcus fascians, plus several bacterial hypothetical proteins that contain three highly conserved cysteine residues. These ferredoxins each bind a 3Fe-4S cluster. Ferredoxin-soy (SoyB) act as electron transport protein for the cytochrome P450-SOY system []. Ferredoxin-1 (SuaB) and Ferredoxin-2 (SubB) act as electron transport proteins for the herbicide-metabolising cytochrome P-450 SU1 and SU2 systems, respectively [, ]. Ferredoxin-fas2 also plays a role in electrontransfer, the fas operon encoding genes involved in cytokinin production and in host plant fasciation (leafy gall).
Probab=57.82 E-value=3.9 Score=26.92 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=16.3
Q ss_pred CCCccccccccccchhcccc
Q 027264 120 YPTGEERCIACKLCEAVCPA 139 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~~CP~ 139 (226)
+.++.+.|++=|.|+..=|.
T Consensus 8 V~~d~~~C~hag~Cv~~~p~ 27 (64)
T PF06902_consen 8 VTWDRERCIHAGFCVRGAPE 27 (64)
T ss_pred EEECcCcccchhhhhcCCCC
Confidence 34667899999999998774
No 316
>PRK12831 putative oxidoreductase; Provisional
Probab=56.09 E-value=3.2 Score=38.13 Aligned_cols=19 Identities=37% Similarity=0.969 Sum_probs=15.9
Q ss_pred ccccccccc--cchhcccccc
Q 027264 123 GEERCIACK--LCEAVCPAQA 141 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~a 141 (226)
..++|..|+ .|...||.+.
T Consensus 38 ea~rc~~c~~~~C~~~CP~~~ 58 (464)
T PRK12831 38 EASRCLQCKKPKCVKGCPVSI 58 (464)
T ss_pred HHHhhcCCCCCchhhhCCCCC
Confidence 367999998 6999999863
No 317
>KOG2282 consensus NADH-ubiquinone oxidoreductase, NDUFS1/75 kDa subunit [Energy production and conversion]
Probab=54.13 E-value=1.7 Score=40.24 Aligned_cols=61 Identities=23% Similarity=0.405 Sum_probs=30.9
Q ss_pred cccccccccchhcccccccc--chhhhhccCCccccccccCCCCCCcchhhhhcCcccccccCC
Q 027264 124 EERCIACKLCEAVCPAQAIT--IEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 185 (226)
Q Consensus 124 ~~~Ci~Cg~C~~~CP~~ai~--~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~~ 185 (226)
..+||.|-.|++.--.-|-. +....|+.+... ..|.-....-..-|+-++.||+||++.++
T Consensus 174 mtrciqctrcvrfaseiagv~dlgttgrg~d~qi-gtyvek~f~selsgniidicpvgaltskp 236 (708)
T KOG2282|consen 174 MTRCIQCTRCVRFASEIAGVDDLGTTGRGNDMQI-GTYVEKLFMSELSGNIIDICPVGALTSKP 236 (708)
T ss_pred HHHHHhHHHHHHHHHhhcCCcccccccCCCcchH-HHHHHHHHHHhhcCCeeeeccccccccCc
Confidence 56899999998853321111 111111111110 00110011122348889999999998765
No 318
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=53.36 E-value=3.6 Score=37.54 Aligned_cols=18 Identities=39% Similarity=1.080 Sum_probs=15.2
Q ss_pred cccccccc----cchhcccccc
Q 027264 124 EERCIACK----LCEAVCPAQA 141 (226)
Q Consensus 124 ~~~Ci~Cg----~C~~~CP~~a 141 (226)
.++|..|. .|...||.+.
T Consensus 25 a~rc~~c~~~~~~C~~~CP~~~ 46 (449)
T TIGR01316 25 AQRCLNCKDATKPCIKGCPVHV 46 (449)
T ss_pred HhhCcCccCCCCChhhhCCCCC
Confidence 47899997 7999999853
No 319
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=50.75 E-value=1.4 Score=32.34 Aligned_cols=18 Identities=44% Similarity=1.206 Sum_probs=11.3
Q ss_pred cccccccc--ccchhccccc
Q 027264 123 GEERCIAC--KLCEAVCPAQ 140 (226)
Q Consensus 123 ~~~~Ci~C--g~C~~~CP~~ 140 (226)
..++|+.| ..|...||.+
T Consensus 20 ea~rC~~c~~~pC~~aCP~~ 39 (111)
T PF14691_consen 20 EASRCLQCEDPPCQAACPAH 39 (111)
T ss_dssp HHHHS---TT-HHHHTSTT-
T ss_pred HHhhccCCCCCCcccCCCCC
Confidence 35799999 6999999985
No 320
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=49.94 E-value=4.3 Score=39.64 Aligned_cols=19 Identities=37% Similarity=0.931 Sum_probs=15.5
Q ss_pred ccccccccc--cchhcccccc
Q 027264 123 GEERCIACK--LCEAVCPAQA 141 (226)
Q Consensus 123 ~~~~Ci~Cg--~C~~~CP~~a 141 (226)
..++|+.|+ .|+..||.+.
T Consensus 327 ea~rC~~c~~~~C~~~Cp~~~ 347 (752)
T PRK12778 327 EAKRCLDCKNPGCVEGCPVGI 347 (752)
T ss_pred HHHHhhcCCCCcccccCcCCC
Confidence 367899997 5899999863
No 321
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=49.87 E-value=4.1 Score=37.17 Aligned_cols=19 Identities=32% Similarity=0.962 Sum_probs=15.7
Q ss_pred cccccccc--ccchhcccccc
Q 027264 123 GEERCIAC--KLCEAVCPAQA 141 (226)
Q Consensus 123 ~~~~Ci~C--g~C~~~CP~~a 141 (226)
..++|+.| ..|+..||.+.
T Consensus 38 e~~rc~~c~~~~c~~~cp~~~ 58 (457)
T PRK11749 38 EASRCLQCKDAPCVKACPVSI 58 (457)
T ss_pred HHHHhhCCCCCcccccCCCcC
Confidence 35799999 68999999863
No 322
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=49.50 E-value=4.6 Score=40.89 Aligned_cols=18 Identities=56% Similarity=1.154 Sum_probs=15.2
Q ss_pred cccccccc--cchhcccccc
Q 027264 124 EERCIACK--LCEAVCPAQA 141 (226)
Q Consensus 124 ~~~Ci~Cg--~C~~~CP~~a 141 (226)
.++|+.|+ .|...||.+.
T Consensus 330 a~rC~~c~~~~C~~~CP~~~ 349 (1006)
T PRK12775 330 AERCIQCAKPTCIAGCPVQI 349 (1006)
T ss_pred HHhccCCCCccccCCCCCCC
Confidence 56999986 7999999864
No 323
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=48.22 E-value=4.5 Score=40.66 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.3
Q ss_pred cccccccccc--c------------hhcccccccc
Q 027264 123 GEERCIACKL--C------------EAVCPAQAIT 143 (226)
Q Consensus 123 ~~~~Ci~Cg~--C------------~~~CP~~ai~ 143 (226)
...+|..|+. | +..||.+...
T Consensus 186 ea~RC~~C~~p~C~~~~~~~~~~~~~~~CP~~~~I 220 (944)
T PRK12779 186 EVMRDKQCDDKPCELGVLVQGKAEPKGGCPVKIHI 220 (944)
T ss_pred HHHHhcCCCCCCCCCCcccccccCcCCCCcCCCcH
Confidence 3579999986 9 5799987543
No 324
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=45.08 E-value=7.2 Score=39.99 Aligned_cols=20 Identities=20% Similarity=0.464 Sum_probs=17.8
Q ss_pred CCCccccccccccchh-cccc
Q 027264 120 YPTGEERCIACKLCEA-VCPA 139 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~-~CP~ 139 (226)
..+|++.|.+|+.|++ .||+
T Consensus 657 ~~Id~s~Cn~~~~C~~G~CPs 677 (1159)
T PRK13030 657 RRIDQSSCNKDFSCVNGFCPS 677 (1159)
T ss_pred EEECHHHCCCccccccCCCCC
Confidence 4477889999999999 9997
No 325
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=42.55 E-value=13 Score=34.07 Aligned_cols=51 Identities=24% Similarity=0.334 Sum_probs=36.5
Q ss_pred ccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCcccccccC
Q 027264 131 KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 (226)
Q Consensus 131 g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai~~~ 184 (226)
|.=.+.||.+...+.+++.+.. ..+++|+...|+.|..|---=|..-|.++
T Consensus 558 gpE~rfCPAgVYEyV~dE~~~~---~krlqINaQNCiHCKtCDIKdP~QnI~W~ 608 (621)
T KOG2415|consen 558 GPESRFCPAGVYEYVPDEAGPV---GKRLQINAQNCIHCKTCDIKDPKQNINWV 608 (621)
T ss_pred ChhhccCCccceeecccccCCC---cceEEEccccceecccccccCcccCceee
Confidence 3345679998777665543222 22678999999999999888888877654
No 326
>TIGR02484 CitB CitB domain protein. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the C-terminal domain of the R. capsulatus CobZ, which, in most other species exists as a separate gene adjacent to CobZ.
Probab=42.44 E-value=8.8 Score=34.29 Aligned_cols=17 Identities=35% Similarity=1.007 Sum_probs=15.3
Q ss_pred CCCCCcchhhhhcCccc
Q 027264 163 MTKCIYCGFCQEACPVD 179 (226)
Q Consensus 163 ~~~C~~Cg~Cv~~CP~~ 179 (226)
.+.|..|+.|...||+-
T Consensus 13 l~iC~~C~~C~~~Cpvf 29 (372)
T TIGR02484 13 LNLCNSCGYCTGLCAVF 29 (372)
T ss_pred hHhCcCcCCccccCCCc
Confidence 46799999999999987
No 327
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=40.56 E-value=9.5 Score=39.14 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=18.2
Q ss_pred CCCccccccccccchh-ccccc
Q 027264 120 YPTGEERCIACKLCEA-VCPAQ 140 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~-~CP~~ 140 (226)
..+|++.|.+|+.|++ .||+-
T Consensus 671 ~~Idqs~Cn~d~sC~~G~CPsF 692 (1165)
T PRK09193 671 RRIDQSSCNKDFSCLKGFCPSF 692 (1165)
T ss_pred EEECHhHCCCccccccCCCCCc
Confidence 4477889999999999 99973
No 328
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=38.40 E-value=11 Score=38.80 Aligned_cols=20 Identities=20% Similarity=0.472 Sum_probs=17.8
Q ss_pred CCCccccccccccchh-cccc
Q 027264 120 YPTGEERCIACKLCEA-VCPA 139 (226)
Q Consensus 120 ~~~~~~~Ci~Cg~C~~-~CP~ 139 (226)
..+|++.|.+|+.|++ .||+
T Consensus 685 ~~Idqs~Cn~d~sC~~G~CPs 705 (1186)
T PRK13029 685 RKINQSSCNKDFSCVKGFCPS 705 (1186)
T ss_pred EEECHhHCCCccccccCCCCC
Confidence 4477889999999999 9998
No 329
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=37.25 E-value=9.9 Score=35.12 Aligned_cols=19 Identities=32% Similarity=0.931 Sum_probs=15.8
Q ss_pred cccccccccc--chh--cccccc
Q 027264 123 GEERCIACKL--CEA--VCPAQA 141 (226)
Q Consensus 123 ~~~~Ci~Cg~--C~~--~CP~~a 141 (226)
..++|+.|+. |.. .||.+.
T Consensus 40 ~~~rc~~c~~~~C~~~~~CP~~~ 62 (485)
T TIGR01317 40 QAARCMDCGTPFCHNDSGCPLNN 62 (485)
T ss_pred HHHhccCCCCCCCCCCCCCCCCC
Confidence 3679999975 999 999864
No 330
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=33.10 E-value=1.9e+02 Score=25.96 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCcceec
Q 027264 81 VRGLGLTLKYFFDKKVTIN 99 (226)
Q Consensus 81 ~~~l~~~~~~~f~~~~~~~ 99 (226)
...++..+|..|||....|
T Consensus 433 ~~~~~~~~k~~~DP~~i~n 451 (459)
T COG0277 433 AWALLRAIKRAFDPNGIFN 451 (459)
T ss_pred HHHHHHHHHHhcCCCCCCC
Confidence 3567788899999988877
No 331
>COG0348 NapH Polyferredoxin [Energy production and conversion]
Probab=32.40 E-value=15 Score=32.98 Aligned_cols=51 Identities=18% Similarity=0.356 Sum_probs=32.4
Q ss_pred ccccccccchhccccccccchhhhhccCCccccccccCCCCCC-cchhhhhcCcccc
Q 027264 125 ERCIACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCI-YCGFCQEACPVDA 180 (226)
Q Consensus 125 ~~Ci~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~-~Cg~Cv~~CP~~A 180 (226)
.-++.=+.|...||.+++.-.... .....+..+...|. .|..|.+.||...
T Consensus 177 ~~~~rr~~C~ylCP~g~~~~v~~~-----~~~~~v~~~~~~~~~r~~~c~k~cp~~~ 228 (386)
T COG0348 177 GLFVRRFWCRYLCPYGAFQGVLFD-----KSLLKVNYDDKRGCPRCKRCKKVCPEPI 228 (386)
T ss_pred ccccccceeEEeCCHHHHHHHHcc-----cceEEEecccccCCcccccccccCCccc
Confidence 446677899999998765322211 11123444554554 6999999999776
No 332
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=31.60 E-value=27 Score=26.66 Aligned_cols=42 Identities=24% Similarity=0.521 Sum_probs=24.8
Q ss_pred ccccchhccccccccchhhhhccCCccccccccCCCCCCcchhhhhcCccccc
Q 027264 129 ACKLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAI 181 (226)
Q Consensus 129 ~Cg~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~Cg~Cv~~CP~~Ai 181 (226)
.||.|-..||.+-.--... =. .+..| =..||.|-..||.|..
T Consensus 86 nCG~Cg~~C~~g~~cC~G~--Cv------d~~~d---~~~CG~Cg~~C~~G~~ 127 (136)
T PF04885_consen 86 NCGACGNKCPYGQTCCGGQ--CV------DLNSD---PRHCGACGNKCPPGQK 127 (136)
T ss_pred ccHhhcCCCCCCceecCCE--eE------CCCCC---ccccCCCCCcCCCcCC
Confidence 4999999999864322110 00 01122 3458888899988743
No 333
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=30.60 E-value=19 Score=35.60 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHhhhhHhhhhccCC
Q 027264 5 LARKSLSALRARHLAVSGQALQGS 28 (226)
Q Consensus 5 ~~~~~~~~l~~~~~~i~Gha~~gn 28 (226)
++-.+|+.||-.-.+|=|-.+.-|
T Consensus 94 ~GL~sL~dlFPnLtVIRG~rLF~n 117 (1025)
T KOG4258|consen 94 YGLESLRDLFPNLTVIRGRRLFLN 117 (1025)
T ss_pred echhhHHHhCCceEEEccceehhc
Confidence 344566777666666767666655
No 334
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=28.74 E-value=27 Score=31.67 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=22.1
Q ss_pred Ccchhhhh------cCcccccccCCCcccchhcHHHhhcCHHHH
Q 027264 167 IYCGFCQE------ACPVDAIVEGPNFEYSTETHEELLYDKEKL 204 (226)
Q Consensus 167 ~~Cg~Cv~------~CP~~Ai~~~~~~~~~~~~~~~~~~d~~~~ 204 (226)
.+|+.|+. .||.+|+.....+....+-..++..|....
T Consensus 27 ~~c~~C~~~~~~C~yC~~~~~e~~g~~~t~~evl~ev~~d~~~~ 70 (404)
T TIGR03278 27 FGCKNCPPGTKGCDYCTRSVWEINGDFIPPQVVLGEVQTSLGFR 70 (404)
T ss_pred CCCCcCCCCCCCCCCCCchhhhhcCCcCCHHHHHHHHHHHHHHh
Confidence 45555544 577787766666555555555554444443
No 335
>PF12801 Fer4_5: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Ferredoxins are iron-sulphur proteins that mediate electron transfer in a range of metabolic reactions; they fall into several subgroups according to the nature of their iron-sulphur cluster(s) [, ]. One group, originally found in bacteria, has been termed "bacterial-type", in which the active centre is a 4Fe-4S cluster. 4Fe-4S ferredoxins may in turn be subdivided into further groups, based on their sequence properties. Most contain at least one conserved domain, including four Cys residues that bind to a 4Fe-4S centre. ; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding
Probab=24.51 E-value=25 Score=21.17 Aligned_cols=13 Identities=31% Similarity=0.823 Sum_probs=10.4
Q ss_pred hhhhhcCcccccc
Q 027264 170 GFCQEACPVDAIV 182 (226)
Q Consensus 170 g~Cv~~CP~~Ai~ 182 (226)
.-|...||.|++.
T Consensus 22 ~~C~~~CP~g~~~ 34 (48)
T PF12801_consen 22 AWCGWLCPFGALQ 34 (48)
T ss_pred hHHhccCCchHHH
Confidence 4688899999875
No 336
>cd07031 RNAP_II_RPB3 RPB3 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB3 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB3 subunit is similar to the bacterial RNAP alpha subunit in that it contains two subdomains: one subdomain is similar the eukaryotic Rpb11/AC19/archaeal L subunit which is involved in dimerization, and the other is an inserted beta sheet subdomain. The RPB3 subunit heterodimerizes with the RPB11 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association.
Probab=23.26 E-value=26 Score=29.78 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=29.9
Q ss_pred CCCCCCcchhhhhcCc--ccccc---cCCCcccchhcHHHhhc
Q 027264 162 DMTKCIYCGFCQEACP--VDAIV---EGPNFEYSTETHEELLY 199 (226)
Q Consensus 162 d~~~C~~Cg~Cv~~CP--~~Ai~---~~~~~~~~~~~~~~~~~ 199 (226)
+...|+.|..|...|+ .+.+. ..+.|.+..++.|.+..
T Consensus 198 ~~~~c~~c~~c~~~~~~~~~~v~i~~~~~~fiF~VES~Gsl~p 240 (265)
T cd07031 198 DKEWPKSENACIEEPPEKDALFDIDAKPDKFYFNVESTGALPP 240 (265)
T ss_pred ccccCchhHHHhhcccccCCceEEEeeCCEEEEEEEecCCCCH
Confidence 6678999999999994 45554 35779999999988744
No 337
>COG3592 Uncharacterized conserved protein [Function unknown]
Probab=22.21 E-value=37 Score=22.69 Aligned_cols=18 Identities=17% Similarity=0.237 Sum_probs=13.7
Q ss_pred Cccccccccccchhcccc
Q 027264 122 TGEERCIACKLCEAVCPA 139 (226)
Q Consensus 122 ~~~~~Ci~Cg~C~~~CP~ 139 (226)
.+...|..-|.|++-=|.
T Consensus 20 fn~~iC~Hs~nCV~Gn~~ 37 (74)
T COG3592 20 FNTAICAHSGNCVRGNPK 37 (74)
T ss_pred eccceeecccceecCCHh
Confidence 456789999999886553
No 338
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=21.91 E-value=96 Score=28.65 Aligned_cols=78 Identities=23% Similarity=0.075 Sum_probs=39.6
Q ss_pred HHHhhhhHhhhhccCCcccCcccccCCCCCC-CCCchhHHHHHHHHHHHhhhHHHHHHHH-------HHHh----hhHHH
Q 027264 13 LRARHLAVSGQALQGSQHYGLRFNAHPYSSY-FPSKKDDEEKEQLLKEISKDWSSVFERS-------INML----FLTEM 80 (226)
Q Consensus 13 l~~~~~~i~Gha~~gn~~~~~~~~~H~~~~~-~~~~~p~~~~~~~~~~~~~~v~~~~~~~-------i~~~----~~~~~ 80 (226)
+.++--+|+||+.+|| .|-+... -+....-++..++-+.+.+.+...-... -+.. .+.+-
T Consensus 403 w~~~~sav~ph~~e~v--------Fy~v~~l~s~~~~~~e~~~~~n~riv~fc~~ag~~~keyl~~~~~~e~w~~hfG~~ 474 (505)
T KOG1231|consen 403 WSNRLSAVTPHAGEGV--------FYLVILLRSSGKEEHEELEQLNDRIVKFCLAAGTCTKEYLPHYGKREYWVEHFGEK 474 (505)
T ss_pred hhhhhccccccCCCce--------EEEEEEecCCCchhHHHHHHHHHHHHHHHHHcCcChhhhcCCcccHHHHHHHhChh
Confidence 3455688999999999 7763221 1333333344444444443332220000 0011 12223
Q ss_pred HHHHHHHHHHhcCCcceec
Q 027264 81 VRGLGLTLKYFFDKKVTIN 99 (226)
Q Consensus 81 ~~~l~~~~~~~f~~~~~~~ 99 (226)
..+++. +|..|||..+++
T Consensus 475 w~~f~~-~K~~~DPk~Il~ 492 (505)
T KOG1231|consen 475 WVDFMR-IKKAYDPKRILN 492 (505)
T ss_pred HHHHHH-HHhhcCHHHhcC
Confidence 444555 788888877777
No 339
>KOG4258 consensus Insulin/growth factor receptor (contains protein kinase domain) [Signal transduction mechanisms]
Probab=20.39 E-value=43 Score=33.25 Aligned_cols=36 Identities=25% Similarity=0.636 Sum_probs=20.7
Q ss_pred ccchhccccccccchhhhhccCCccccccccCCCCCCcc-hhhhhcCcccccc
Q 027264 131 KLCEAVCPAQAITIEAEEREDGSRRTTRYDIDMTKCIYC-GFCQEACPVDAIV 182 (226)
Q Consensus 131 g~C~~~CP~~ai~~~~~~~~~~~~~~~~~~~d~~~C~~C-g~Cv~~CP~~Ai~ 182 (226)
|.|+..||++-..-. +...|+-| |.|..+|-.++-+
T Consensus 304 ~~Cv~~CPsGy~~N~----------------~~~~C~~C~g~C~~vC~~~~~t 340 (1025)
T KOG4258|consen 304 GQCVAKCPSGYKRNS----------------SSSECVKCEGPCPKVCEPGTKT 340 (1025)
T ss_pred ccchhhCCCcceecC----------------cccceeccCCCCcceeccCceE
Confidence 578888887622111 12357766 4788888654433
Done!