Query 027267
Match_columns 225
No_of_seqs 97 out of 99
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 11:57:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2py8_A Hypothetical protein RB 100.0 1.5E-48 5.1E-53 322.8 12.9 115 108-223 6-128 (147)
2 3ka1_A RBCX protein; chaperone 100.0 1.2E-44 4.1E-49 293.2 11.4 106 109-215 7-113 (126)
3 2peq_A ORF134; helix bundle, p 100.0 3.9E-44 1.3E-48 292.7 12.5 110 108-218 6-116 (134)
4 3hyb_A RBCX protein; rubisco, 100.0 7.9E-43 2.7E-47 290.2 10.5 103 106-210 24-127 (155)
5 2l9d_A Uncharacterized protein 60.1 1.7 5.9E-05 34.3 -0.2 24 130-153 68-91 (108)
6 3or8_A Transcription elongatio 35.7 37 0.0013 28.7 4.2 94 32-151 27-128 (197)
7 2gtq_A Aminopeptidase N; alani 31.2 31 0.0011 34.4 3.5 73 110-187 738-834 (867)
8 3zta_A MTR, anti-sigma-factor 29.1 1.3E+02 0.0045 24.0 6.2 37 166-204 102-142 (146)
9 3b34_A Aminopeptidase N; prote 26.9 35 0.0012 34.4 3.0 79 106-188 757-859 (891)
10 3kat_A Nacht, LRR and PYD doma 26.3 42 0.0014 25.8 2.7 55 119-175 47-102 (107)
11 1naf_A ADP-ribosylation factor 26.2 2.5E+02 0.0085 22.8 7.5 56 156-211 19-79 (158)
12 2kfd_A PRE-mRNA-processing pro 25.7 14 0.00049 27.1 -0.0 33 105-137 32-68 (69)
13 3ut4_A CTHE_2751, putative unc 23.2 1.9E+02 0.0067 23.1 6.2 74 109-184 48-125 (134)
14 1oxz_A ADP-ribosylation factor 23.1 2.8E+02 0.0097 23.0 7.4 57 155-211 34-95 (186)
15 4b4s_A BCL-2-like protein 10; 22.5 47 0.0016 27.4 2.5 43 104-146 2-62 (175)
16 2qc0_A Uncharacterized protein 20.9 4.3E+02 0.015 23.3 9.5 53 106-164 159-213 (373)
17 3iee_A Putative exported prote 20.4 3.5E+02 0.012 24.2 7.8 68 106-182 82-150 (270)
18 1x5b_A Signal transducing adap 20.3 90 0.0031 24.9 3.7 56 156-219 94-155 (163)
No 1
>2py8_A Hypothetical protein RBCX; all helical fold, chaperone; HET: PE4; 2.45A {Synechocystis SP} SCOP: a.280.1.1
Probab=100.00 E-value=1.5e-48 Score=322.82 Aligned_cols=115 Identities=25% Similarity=0.407 Sum_probs=103.9
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCCCHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHh
Q 027267 108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK-KQDLAERVMITRLHLYGKWVKK 186 (225)
Q Consensus 108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~DGD~fL~~Lmr-~~eLAlRIMeVRehla~EW~~~ 186 (225)
-|.|||++|++||||+||||||+||+|||||.|.||++|+++|||+|||+||++||+ +|+||+|||+||+|||++|.++
T Consensus 6 ~~kdaAk~L~~yfTy~AvR~VL~QL~EtNP~~y~wL~~Fl~~npl~DGd~fL~~Lmre~~~LAlRIMeVR~~ya~e~fe~ 85 (147)
T 2py8_A 6 IAQATVKVLQSYLTYQAVLRIQSELGETNPPQAIWLNQYLASHSIQNGETFLTELLDENKELVLRILAVREDIAESVLDF 85 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHhcCCCccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHH---H----hhcccCCCCCCCCC
Q 027267 187 CDHAQMYKAISDENLELMRERL---I----ETVIWPSDDSNTEK 223 (225)
Q Consensus 187 l~~~m~~~~I~e~N~elmRe~L---~----eT~~~psd~~n~~~ 223 (225)
++ +|++++|+++|+++||+|| + |+++||||++|+||
T Consensus 86 l~-em~~~~I~~~N~elmRq~leR~t~~~~e~~~~psd~~~~~~ 128 (147)
T 2py8_A 86 LP-GMTRNSLAESNIAHRRHLLERLTRTVAEVDNFPSETSNGES 128 (147)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCCCccc
Confidence 87 9999999999999999775 3 77799999999987
No 2
>3ka1_A RBCX protein; chaperone, helix bundle, rubisco assembly; 1.71A {Thermosynechococcus elongatus bp-1} PDB: 3q20_A
Probab=100.00 E-value=1.2e-44 Score=293.17 Aligned_cols=106 Identities=26% Similarity=0.426 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCCCHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHhc
Q 027267 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK-KQDLAERVMITRLHLYGKWVKKC 187 (225)
Q Consensus 109 f~DtAk~L~~yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~DGD~fL~~Lmr-~~eLAlRIMeVRehla~EW~~~l 187 (225)
+.|||++|++||||+|||+||+||+|||||.|.||++|+++|||+|||+||++||+ +|+||+|||+||+|||++|.+++
T Consensus 7 a~Dtak~L~~yfTY~Avr~Vl~QL~E~np~~~~wL~~F~~~~~~~DGe~fl~~L~~E~~~LA~RIM~vR~hla~~v~d~l 86 (126)
T 3ka1_A 7 AKQTTKTLISYLTYQAVRTVIGQLAETDPPRSLWLHQFTSQESIQDGERYLEALFREQPDLGFRILTVREHLAEMVADYL 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHGGGH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHcCCCccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccC
Q 027267 188 DHAQMYKAISDENLELMRERLIETVIWP 215 (225)
Q Consensus 188 ~~~m~~~~I~e~N~elmRe~L~eT~~~p 215 (225)
| +|++++|+++|+++||+||..-.-..
T Consensus 87 ~-eMv~~~I~q~N~e~~Rq~Ler~t~~~ 113 (126)
T 3ka1_A 87 P-EMLRAGIQQANLQQRAQQLERMTQVS 113 (126)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8 99999999999999999995544333
No 3
>2peq_A ORF134; helix bundle, protein complex assembly, chaperone; 1.90A {Synechococcus SP} SCOP: a.280.1.1 PDB: 2pem_A 2pen_A 2z44_A 2z45_A 2z46_A 2pek_A 2pej_A 2pei_A
Probab=100.00 E-value=3.9e-44 Score=292.66 Aligned_cols=110 Identities=22% Similarity=0.299 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCCCHHHHHHHHcC-CchhHHHHHHHHHHHHHHHHHh
Q 027267 108 SFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK-KQDLAERVMITRLHLYGKWVKK 186 (225)
Q Consensus 108 ~f~DtAk~L~~yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~DGD~fL~~Lmr-~~eLAlRIMeVRehla~EW~~~ 186 (225)
-|+|||++|++||||+||||||+||+|||||.|.||++|+++|||+|||+||++||+ +|+||+|||+||+|||++|.++
T Consensus 6 ~~~daAk~L~~yfTy~AvR~Vl~QL~e~np~~~~wL~~F~~~~~l~DGd~fL~~L~~e~~~LAlRIM~VRe~ya~e~~e~ 85 (134)
T 2peq_A 6 VAKETAITLQSYLTYQAVRLISQQLSETNPGQAIWLGEFSKRHPIQESDLYLEAMMLENKELVLRILTVRENLAEGVLEF 85 (134)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHSCTTSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHhcCCCccHHHHHHHHHhHCHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999999 9999999999999999999888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCCCC
Q 027267 187 CDHAQMYKAISDENLELMRERLIETVIWPSDD 218 (225)
Q Consensus 187 l~~~m~~~~I~e~N~elmRe~L~eT~~~psd~ 218 (225)
++ +|++++|+++|+++||+||.+.+.....+
T Consensus 86 l~-~m~~~~I~~~N~~lmR~~ler~t~~~~~~ 116 (134)
T 2peq_A 86 LP-EMVLSQIKQSNGNHRRSLLERLTQVDSSS 116 (134)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 87 99999999999999999997777544333
No 4
>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* 3rg6_C
Probab=100.00 E-value=7.9e-43 Score=290.21 Aligned_cols=103 Identities=37% Similarity=0.514 Sum_probs=97.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCCCHHHHHHHHcC-CchhHHHHHHHHHHHHHHHH
Q 027267 106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK-KQDLAERVMITRLHLYGKWV 184 (225)
Q Consensus 106 ed~f~DtAk~L~~yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~DGD~fL~~Lmr-~~eLAlRIMeVRehla~EW~ 184 (225)
.+-+.|||++|++||||+||||||+||+|||||.|.||++|++ |||+|||+||++||+ +|+||+|||+||+|||+++.
T Consensus 24 k~iakDtak~L~~YfTYqAvr~VLaQL~EtNP~~y~wL~~F~s-~~iqDGe~fl~~L~~E~~~LA~RIM~VRehlae~v~ 102 (155)
T 3hyb_A 24 KQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLALWLHNFSA-GKVQDGEKYIEELFLEKPDLALRIMTVREHIAEEIA 102 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT-TCCSSHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHc-CCcccHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 3447899999999999999999999999999999999999999 999999999999999 99999999999999999888
Q ss_pred HhcchHHHHHHHHHHHHHHHHHHHHh
Q 027267 185 KKCDHAQMYKAISDENLELMRERLIE 210 (225)
Q Consensus 185 ~~l~~~m~~~~I~e~N~elmRe~L~e 210 (225)
++++ +|++++|+++|+++||+||..
T Consensus 103 eflp-eMv~~~IqqaN~el~Rq~LeR 127 (155)
T 3hyb_A 103 EFLP-EMVVTGIQQANMEKRRQHLER 127 (155)
T ss_dssp GGHH-HHHHHHHHHHHHHHHHHCC--
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 8876 999999999999999999833
No 5
>2l9d_A Uncharacterized protein; PG9854E, structural genomics, PSI-biology, protein structure initiative, unknown function; NMR {Methylobacillus flagellatus}
Probab=60.09 E-value=1.7 Score=34.30 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=22.1
Q ss_pred HHhhccCcchHHHHHhchhcCCCC
Q 027267 130 HQLYEMNPTQYMWFYNFVATNKPG 153 (225)
Q Consensus 130 ~QL~EtNPp~y~WL~~Fl~~npl~ 153 (225)
.+|++.||.+|..+++|...|.|+
T Consensus 68 ~~L~~~~P~af~fvm~FA~dN~L~ 91 (108)
T 2l9d_A 68 LKLKDTNPEGFNQLMHFATENQLN 91 (108)
T ss_dssp THHHHHCHHHHHHHHHHHHHHTEE
T ss_pred cHhhhcChHHHHHHHHHHHhCCce
Confidence 578999999999999999999985
No 6
>3or8_A Transcription elongation factor SPT6; SH2, CTD binding; HET: MES; 1.60A {Candida glabrata} PDB: 3pjp_A* 3psj_A* 3psk_A 2l3t_A 3gxw_A 3gxx_A
Probab=35.70 E-value=37 Score=28.73 Aligned_cols=94 Identities=17% Similarity=0.335 Sum_probs=55.9
Q ss_pred CCcceEEeecccccchhheecccccccccccccccchhhhhhhhhhceecccccc-cccCCCCccEeecCCCCCCcccHH
Q 027267 32 GGGELVLRRNSSVKRKKVKVAARSLELGSSFVDSWDDWRLSSKVISNMVNRSSRK-RKQRRDRRPVIVNEVGGQYEDSFE 110 (225)
Q Consensus 32 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~v~~~~r~-~~~~~~~~l~i~~~~gGq~ed~f~ 110 (225)
.-||++++-|+-|. -||.| .|+....++.++--.-..+ ....=++.|+| ||+ .|+
T Consensus 27 ~~Ge~iIRPSSkg~-dhLtv----------------TwKv~d~v~qHidI~E~~K~~~~slG~~L~i----~~~---~y~ 82 (197)
T 3or8_A 27 ERGDFVIRQSSRGD-DHLAI----------------TWKLDKDLFQHVDIQELEKENPLALGKVLVV----EGQ---RYH 82 (197)
T ss_dssp CTTCEEEEECSSCT-TEEEE----------------EEEEETTEEEEEEEEEESCSSTTSCCSEEEE----TTE---EES
T ss_pred CCCCEEEeeCCCCC-CcEEE----------------EEEECCCcEEEEEEEEcCCccccccCceEEE----CCe---EEC
Confidence 45999999988887 88876 6776666666653332211 11223556666 343 678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-------cCcchHHHHHhchhcCC
Q 027267 111 DVKKQIQNYFTYKAVRTVLHQLYE-------MNPTQYMWFYNFVATNK 151 (225)
Q Consensus 111 DtAk~L~~yFTY~AVRtVL~QL~E-------tNPp~y~WL~~Fl~~np 151 (225)
|-+..+.+|-.-.|..+ ..|.. +-...-.||.++...||
T Consensus 83 DLDElI~~~V~pm~~~v--~el~~h~kf~~g~~~eve~~L~~ek~~nP 128 (197)
T 3or8_A 83 DLDQIIVEYLQNKIRLL--NELTSNEKFKAGTKKEVVKFIEDYSKVNP 128 (197)
T ss_dssp SHHHHHHHTHHHHHHHH--HHHHTSTTEECSCHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHH--HHHHhCccccCCCHHHHHHHHHHHHHhCC
Confidence 89999999987775221 11111 11135556666666665
No 7
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2, structural genomics, protein structure initiative; 2.05A {Neisseria meningitidis}
Probab=31.22 E-value=31 Score=34.44 Aligned_cols=73 Identities=23% Similarity=0.241 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHHhhc-----cCcchHH-HHHhchhcCCC----CCHH--HHHHHHcC-----C
Q 027267 110 EDVKKQIQNYFTYKA-------VRTVLHQLYE-----MNPTQYM-WFYNFVATNKP----GDGK--HFIRILGK-----K 165 (225)
Q Consensus 110 ~DtAk~L~~yFTY~A-------VRtVL~QL~E-----tNPp~y~-WL~~Fl~~npl----~DGD--~fL~~Lmr-----~ 165 (225)
.+...++..+|.++| +..|++-+.. .||.... |+..|+. ||. .||. +||..... |
T Consensus 738 ~~~~~~~~k~~~~~a~~~~~~~~~~v~~l~~~~~f~~~npn~~r~l~~~~~~-n~~~fh~~~g~gy~~~~~~~~~l~~~n 816 (867)
T 2gtq_A 738 SDDALVMDKYFALVGSSRRSDTLQQVRTALQHPKFSLENPNKARSLIGSFSR-NVPHFHAEDGSGYRFIADKVIEIDRFN 816 (867)
T ss_dssp TTCHHHHHHHHHHHHHCCSTTHHHHHHHHTTSTTCCTTCHHHHHHHHHHHHT-CHHHHTCTTSHHHHHHHHHHHHHHTTC
T ss_pred cCCchHHHHHHHHHhcCCChHHHHHHHHHhhCcCCCcCCchHHHHHHHHHhh-CccccCCCCCcHHHHHHHHHHHhcCcC
Confidence 466677888998885 4555555544 4675555 8888887 775 5766 66765533 9
Q ss_pred chhHHHHHHHHHHHHHHHHHhc
Q 027267 166 QDLAERVMITRLHLYGKWVKKC 187 (225)
Q Consensus 166 ~eLAlRIMeVRehla~EW~~~l 187 (225)
|.+|-|+.+.=. .|.++-
T Consensus 817 p~~a~r~~~~~~----~~~~~~ 834 (867)
T 2gtq_A 817 PQVAARLVQAFN----LCNKLE 834 (867)
T ss_dssp HHHHHHHGGGGT----TGGGBC
T ss_pred HHHHHHHHHHHh----hhhccC
Confidence 999999887533 677553
No 8
>3zta_A MTR, anti-sigma-factor antagonist (STAS) domain protei; signaling, signal transduction, phosphorylation, protein-Pro interaction; 2.70A {Moorella thermoacetica}
Probab=29.15 E-value=1.3e+02 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=25.9
Q ss_pred chhHHHHHHHHHHHHHHHHHhcchHH----HHHHHHHHHHHHH
Q 027267 166 QDLAERVMITRLHLYGKWVKKCDHAQ----MYKAISDENLELM 204 (225)
Q Consensus 166 ~eLAlRIMeVRehla~EW~~~l~~~m----~~~~I~e~N~elm 204 (225)
+.-|.-|-+||.|+++.-- |+- .| -++-|++.|-.+|
T Consensus 102 qaaasyittvrdhifkgts-fll-kmalqtqreviqkqnealm 142 (146)
T 3zta_A 102 QAAASYITTVRDHIFKGTS-FLL-KMALQTQREVIQKQNEALM 142 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchH-HHH-HHHHHHHHHHHHHHHHHHH
Confidence 4458889999999999533 332 23 3567888887776
No 9
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal membrane, metal-binding, metalloprotease; HET: PHE; 1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A* 2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A 2dq6_A 2dqm_A* 2zxg_A*
Probab=26.88 E-value=35 Score=34.39 Aligned_cols=79 Identities=18% Similarity=0.290 Sum_probs=51.4
Q ss_pred cccHHHHHHHHHHHHHHHHHHH---HHHHhhc---------cCcchHHHHH-hchhcCCC----CCHH--HHHHHHcC--
Q 027267 106 EDSFEDVKKQIQNYFTYKAVRT---VLHQLYE---------MNPTQYMWFY-NFVATNKP----GDGK--HFIRILGK-- 164 (225)
Q Consensus 106 ed~f~DtAk~L~~yFTY~AVRt---VL~QL~E---------tNPp~y~WL~-~Fl~~npl----~DGD--~fL~~Lmr-- 164 (225)
.+.|.+-+-++-.+|..||..- +++++.. .||....=|+ -|...||. .||. +||.....
T Consensus 757 ~~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~~~f~~~n~~~fh~~~g~gy~~~~~~~~~l 836 (891)
T 3b34_A 757 DDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIGAFAGSNPAAFHAEDGSGYLFLVEMLTDL 836 (891)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCCCTTHHHHHHHHTTCTTCCTTCHHHHHHHHHHHHHHCHHHHTCTTSHHHHHHHHHHHHH
T ss_pred HHHhccCcHHHHHHHHHHhCCCCccHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhccCccccCCCCCcHHHHHHHHHHHh
Confidence 3445677788999999998532 3333332 5675444444 67777883 5765 66766543
Q ss_pred ---CchhHHHHHHHHHHHHHHHHHhcc
Q 027267 165 ---KQDLAERVMITRLHLYGKWVKKCD 188 (225)
Q Consensus 165 ---~~eLAlRIMeVRehla~EW~~~l~ 188 (225)
||.+|-|+++. ...|.++-+
T Consensus 837 ~~~np~~a~r~~~~----~~~~~~~~~ 859 (891)
T 3b34_A 837 NSRNPQVASRLIEP----LIRLKRYDA 859 (891)
T ss_dssp HHHCHHHHHHHHHH----HHTGGGSCH
T ss_pred cCcCHHHHHHHHHH----HhhhhhcCH
Confidence 99999999875 448886643
No 10
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=26.33 E-value=42 Score=25.82 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCCCHHHHHHHHcC-CchhHHHHHHH
Q 027267 119 YFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGK-KQDLAERVMIT 175 (225)
Q Consensus 119 yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~DGD~fL~~Lmr-~~eLAlRIMeV 175 (225)
+||-.-.-+|.++ .|++....-|++++..--..--+.|+..|-. +|-|+..+++.
T Consensus 47 VLteee~e~I~ae--~T~q~k~R~Lld~v~~kG~~A~~~F~~~L~e~dp~L~~~L~~~ 102 (107)
T 3kat_A 47 VLSQEQYERVLAE--NTRPSQMRKLFSLSQSWDRKCKDGLYQALKETHPHLIMELWEK 102 (107)
T ss_dssp TSCHHHHHHHHHC--CSHHHHHHHHHHGGGGCCTTHHHHHHHHHHHHCHHHHHHHHHC
T ss_pred hCCHHHHHHHHhC--CCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCHHHHHHHHhh
Confidence 3444455555553 6888999999999988788888999999988 99998887653
No 11
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=26.18 E-value=2.5e+02 Score=22.84 Aligned_cols=56 Identities=14% Similarity=0.166 Sum_probs=33.9
Q ss_pred HHHHHHHcC--Cch---hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Q 027267 156 KHFIRILGK--KQD---LAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIET 211 (225)
Q Consensus 156 D~fL~~Lmr--~~e---LAlRIMeVRehla~EW~~~l~~~m~~~~I~e~N~elmRe~L~eT 211 (225)
.+-|++|.+ +|+ -|.|+|.+....=++=.++..+....=..-+.|+++|.+-|.+.
T Consensus 19 s~~L~~Lirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~seLe~V~~nv~LL~EML~~~ 79 (158)
T 1naf_A 19 SKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSH 79 (158)
T ss_dssp HHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457888888 664 49999988764222111121111222245577999999999653
No 12
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=25.69 E-value=14 Score=27.08 Aligned_cols=33 Identities=21% Similarity=0.512 Sum_probs=26.2
Q ss_pred CcccHHHHHHHHHHHHHHHHH---HHHHHHhhc-cCc
Q 027267 105 YEDSFEDVKKQIQNYFTYKAV---RTVLHQLYE-MNP 137 (225)
Q Consensus 105 ~ed~f~DtAk~L~~yFTY~AV---RtVL~QL~E-tNP 137 (225)
-|++|+||.+.|++|.-|+|+ --|..|+.+ .+|
T Consensus 32 kPe~WE~A~~~I~~~~Ey~~l~~E~~v~~qif~~F~P 68 (69)
T 2kfd_A 32 KPSTWDLASKELGESLEYKALGDEDNIRRQIFEDFKP 68 (69)
T ss_dssp CCSSHHHHHHHHTTSTTSGGGTTSHHHHHHHHHHHCC
T ss_pred CCccHHHHHHHHccCHHHHHhhccHHHHHHHHHhcCC
Confidence 478999999999999999998 457777543 444
No 13
>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A
Probab=23.17 E-value=1.9e+02 Score=23.07 Aligned_cols=74 Identities=11% Similarity=0.037 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCC-CHHHHHHHHcC---CchhHHHHHHHHHHHHHHHH
Q 027267 109 FEDVKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPG-DGKHFIRILGK---KQDLAERVMITRLHLYGKWV 184 (225)
Q Consensus 109 f~DtAk~L~~yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~-DGD~fL~~Lmr---~~eLAlRIMeVRehla~EW~ 184 (225)
+..++..|..|-. ..+--|..-|.+-|..=-+|++.|+..+-.. -...+..+|-+ +|.-+++.=+|.+ +|.++.
T Consensus 48 A~~i~~~L~~~~~-~l~p~I~~vl~s~D~~W~ywil~~lv~~~~~~~~~~l~~eL~rl~~~pt~~E~~eev~e-~A~~iL 125 (134)
T 3ut4_A 48 AKDILPVVVLHQS-IAMPHILTILQGNDIMWKYWVIKLMIPYLIYPNKQLVKSELERLSSLEIINEDIREIVN-LSKDYL 125 (134)
T ss_dssp HHHHHHHHHHTHH-HHHHHHHHHHHSSCHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHTCCCSSGGGHHHHH-HHHHHH
T ss_pred HHHHHHHHHHccH-hhHHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCCcchHHHHHHH-HHHHHH
Confidence 4566667776653 4444555555666666666777776655443 35555555555 5544444445554 444444
No 14
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=23.08 E-value=2.8e+02 Score=23.05 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=33.5
Q ss_pred HHHHHHHHcC--Cch-h--HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Q 027267 155 GKHFIRILGK--KQD-L--AERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIET 211 (225)
Q Consensus 155 GD~fL~~Lmr--~~e-L--AlRIMeVRehla~EW~~~l~~~m~~~~I~e~N~elmRe~L~eT 211 (225)
=.+-|++|.+ +|+ | |.|+|.+....=++=.++..+....=..-+.|+++|.+.|.+.
T Consensus 34 kSa~L~eLirs~~PeDL~~AN~LiK~m~~~d~~r~e~~~k~~~eLe~V~~nv~LL~EML~~~ 95 (186)
T 1oxz_A 34 KSKMLARLLKSSHPEDLRAANKLIKEMVQEDQKRMEKISKRVNAIEEVNNNVKLLTEMVMSH 95 (186)
T ss_dssp HHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3678889999 776 4 9999966553211111111111111234557999999999653
No 15
>4b4s_A BCL-2-like protein 10; apoptosis; HET: PG4; 1.90A {Homo sapiens}
Probab=22.47 E-value=47 Score=27.42 Aligned_cols=43 Identities=16% Similarity=0.410 Sum_probs=31.8
Q ss_pred CCcccH-HHHHHHHHHHHHHHH-----------------HHHHHHHhhccCcchHHHHHhc
Q 027267 104 QYEDSF-EDVKKQIQNYFTYKA-----------------VRTVLHQLYEMNPTQYMWFYNF 146 (225)
Q Consensus 104 q~ed~f-~DtAk~L~~yFTY~A-----------------VRtVL~QL~EtNPp~y~WL~~F 146 (225)
-++|.. ++|...+.+|+.|++ +|-+-++|++..+..|.-+.++
T Consensus 2 ~~~d~l~~~t~~L~~DYl~y~~r~p~~p~~~p~s~~aa~LR~va~ele~~~~~~f~~~~~~ 62 (175)
T 4b4s_A 2 GSADPLRERTELLLADYLGYSAREPGTPEPAPSTPEAAVLRSAAARLRQIHRSFFSAYLGY 62 (175)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTSCTTSCCCCCSSHHHHHHHHHHHHHHHHTHHHHHTTTTC
T ss_pred CCccHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 355665 468888899998876 7888889999888887766665
No 16
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=20.85 E-value=4.3e+02 Score=23.26 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhhccCc--chHHHHHhchhcCCCCCHHHHHHHHcC
Q 027267 106 EDSFEDVKKQIQNYFTYKAVRTVLHQLYEMNP--TQYMWFYNFVATNKPGDGKHFIRILGK 164 (225)
Q Consensus 106 ed~f~DtAk~L~~yFTY~AVRtVL~QL~EtNP--p~y~WL~~Fl~~npl~DGD~fL~~Lmr 164 (225)
|+..+++...|..++.|..- -.+.+| -++.-.++|..-||..||+-.+..|+-
T Consensus 159 P~~~~~v~~~m~~l~~~~~~------~~~~~pl~~aa~~h~~f~~IHPF~DGNGR~~Rll~ 213 (373)
T 2qc0_A 159 PAGESVIRDLLSNWEAFLHN------QDDVDPLIKMAMAHYQFEAIHPFIDGNGRTGRVLN 213 (373)
T ss_dssp CCSHHHHHHHHHHHHHHHHC------CCCSCHHHHHHHHHHHHHHHCCSSSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhc------cCCCCHHHHHHHHHHHHHhcCCCcCCchHHHHHHH
Confidence 33567899999999876542 124455 244556789999999999877766543
No 17
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319 from bacteroides FR structural genomics; HET: MSE; 1.70A {Bacteroides fragilis nctc 9343}
Probab=20.41 E-value=3.5e+02 Score=24.17 Aligned_cols=68 Identities=7% Similarity=0.340 Sum_probs=47.8
Q ss_pred cccHHH-HHHHHHHHHHHHHHHHHHHHhhccCcchHHHHHhchhcCCCCCHHHHHHHHcCCchhHHHHHHHHHHHHHH
Q 027267 106 EDSFED-VKKQIQNYFTYKAVRTVLHQLYEMNPTQYMWFYNFVATNKPGDGKHFIRILGKKQDLAERVMITRLHLYGK 182 (225)
Q Consensus 106 ed~f~D-tAk~L~~yFTY~AVRtVL~QL~EtNPp~y~WL~~Fl~~npl~DGD~fL~~Lmr~~eLAlRIMeVRehla~E 182 (225)
++-|.+ +...|...|+ .......|++ ..|.-|..|+......-|++.++.. ..|...+++.|+.|+..
T Consensus 82 ~d~Fg~e~rqnL~q~~~--~lf~s~~~~~----an~~~~~sYlkaed~kkgkKL~~~n---~~l~~~~~e~k~~ifd~ 150 (270)
T 3iee_A 82 GNCFNEETRRNLKQNYT--GLFQARTEFY----ANFDTYLSYLKKKDVTNAKKLLDVN---YQLSTQMSEYKQNIFDI 150 (270)
T ss_dssp CTTSCHHHHHHHHHHHH--HHHHHHHHHH----HHHHHHHHHHHTTCHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHH--HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 445644 7777766553 4455566666 4678888999998888888877776 66777777777777763
No 18
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=20.32 E-value=90 Score=24.93 Aligned_cols=56 Identities=16% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHcC------CchhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCCCC
Q 027267 156 KHFIRILGK------KQDLAERVMITRLHLYGKWVKKCDHAQMYKAISDENLELMRERLIETVIWPSDDS 219 (225)
Q Consensus 156 D~fL~~Lmr------~~eLAlRIMeVRehla~EW~~~l~~~m~~~~I~e~N~elmRe~L~eT~~~psd~~ 219 (225)
++|+.+|.+ ++++-.||++ +..+|.+.++..--+..|.+.=-+|. .+=+.+|..+.
T Consensus 94 ~~Fl~el~~l~~~~~~~~Vk~kil~----li~~W~~~f~~~~~l~~i~~~Y~~Lk----~~G~~FP~~~~ 155 (163)
T 1x5b_A 94 RDFATEVRAVIKNKAHPKVCEKLKS----LMVEWSEEFQKDPQFSLISATIKSMK----EEGITFPPAGS 155 (163)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH----HHHHHHHHTTTCSTTHHHHHHHHHHH----TTTCCCCCCSS
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHH----HHHHHHHHhcCCcccHHHHHHHHHHH----HcCCCCCCCCC
Confidence 667777655 4566667665 55689876641111223333322222 23456776553
Done!