BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027268
MALSITASSASVLSFSQSLSSPTQLFLANRPTYVSFNNNHDHPKSTVIRMGGGPRTYPGG
VSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSV
SADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFFPKGVVHSVKPYGLIASK
RNDLQSKEDNENGNGNLQEVSSTNGFNGKPPKRWRKRGNRKQNKD

High Scoring Gene Products

Symbol, full name Information P value
emb1513
AT2G37920 		protein from Arabidopsis thaliana 1.8e-62
AT1G63250 protein from Arabidopsis thaliana 1.2e-19
AT2G07750 protein from Arabidopsis thaliana 1.4e-19

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027268
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2065664 - symbol:emb1513 "AT2G37920" species:3...   638  1.8e-62   1
TAIR|locus:2038431 - symbol:AT1G63250 species:3702 "Arabi...   227  1.2e-19   2
TAIR|locus:2054688 - symbol:AT2G07750 species:3702 "Arabi...   226  1.4e-19   2


>TAIR|locus:2065664 [details] [associations]
            symbol:emb1513 "AT2G37920" species:3702 "Arabidopsis
            thaliana" [GO:0005375 "copper ion transmembrane transporter
            activity" evidence=ISS] [GO:0009793 "embryo development ending in
            seed dormancy" evidence=NAS] GO:GO:0016021 EMBL:CP002685
            GenomeReviews:CT485783_GR UniGene:At.37355 UniGene:At.37356
            EMBL:AY084504 IPI:IPI00545383 RefSeq:NP_565874.1 PaxDb:Q8LG21
            PRIDE:Q8LG21 EnsemblPlants:AT2G37920.1 GeneID:818368
            KEGG:ath:AT2G37920 TAIR:At2g37920 eggNOG:NOG250736
            HOGENOM:HOG000090693 InParanoid:Q8LG21 OMA:CADEQVK PhylomeDB:Q8LG21
            ProtClustDB:CLSN2917261 Genevestigator:Q8LG21 Uniprot:Q8LG21
        Length = 251

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 128/181 (70%), Positives = 140/181 (77%)

Query:    44 KSTVIRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSE 103
             KSTVIRMGGGPRT+PGGVSKWQWKRMQAKK KQLLKARLCRER IYEMRKRAELKAAV+E
Sbjct:    44 KSTVIRMGGGPRTFPGGVSKWQWKRMQAKKQKQLLKARLCRERQIYEMRKRAELKAAVAE 103

Query:   104 LERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTESDGPQMFETPDGLPSARFF 163
             LERPWE + K PNLFSV ADEQVKVLADRFQ+PGGFDLWT+ DGPQ+FE+ D LPSARFF
Sbjct:   104 LERPWEPIHKPPNLFSVCADEQVKVLADRFQKPGGFDLWTDRDGPQLFESVDDLPSARFF 163

Query:   164 PKGVVHSVKPYGLIASKR----NDLQSKEDNENGNG-NLQEVSSTNGFNGKPPKRWRKRG 218
             PKGVVHSVKPYG ++S       D    +D E G     + V       GK  +R   RG
Sbjct:   164 PKGVVHSVKPYGRLSSSSVVDDGDESEVKDEEIGKKLRGRRVRKRGDDGGK--RRTENRG 221

Query:   219 N 219
             N
Sbjct:   222 N 222


>TAIR|locus:2038431 [details] [associations]
            symbol:AT1G63250 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005524 EMBL:AC022355 GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268799 UniGene:At.52694 ProtClustDB:CLSN2713541
            IPI:IPI00538833 PIR:C96658 RefSeq:NP_176514.1 UniGene:At.36158
            ProteinModelPortal:Q9C8S9 SMR:Q9C8S9 PaxDb:Q9C8S9 PRIDE:Q9C8S9
            EnsemblPlants:AT1G63250.1 GeneID:842631 KEGG:ath:AT1G63250
            GeneFarm:1027 TAIR:At1g63250 InParanoid:Q9C8S9 OMA:TSSRAHI
            PhylomeDB:Q9C8S9 Genevestigator:Q9C8S9 GermOnline:AT1G63250
            Uniprot:Q9C8S9
        Length = 798

 Score = 227 (85.0 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 44/100 (44%), Positives = 60/100 (60%)

Query:    50 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
             MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E
Sbjct:    26 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDSGE 85

Query:   110 AVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 148
                K+      +S  E +K LADRF + G  D W E+DGP
Sbjct:    86 KTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGP 125

 Score = 43 (20.2 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 13/48 (27%), Positives = 26/48 (54%)

Query:   148 PQMFETPDGLPSARFFPKGVVHSVKPYGLIASKRNDLQSKEDN-ENGN 194
             P+   T + + S+R    GV+ +   +G    ++ND  ++ED+ E G+
Sbjct:   206 PKFAGTKEKVKSSRSVV-GVIRNKGLFGRRKFRKNDSSTEEDSDEEGD 252


>TAIR|locus:2054688 [details] [associations]
            symbol:AT2G07750 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
            "helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
            evidence=IEA] [GO:0005739 "mitochondrion" evidence=ISM] [GO:0008026
            "ATP-dependent helicase activity" evidence=IEA;ISS]
            InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
            PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
            InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
            eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
            HOGENOM:HOG000268799 EMBL:AC004483 IPI:IPI00546939 PIR:E84488
            RefSeq:NP_178818.1 UniGene:At.52694 ProteinModelPortal:O80792
            SMR:O80792 PaxDb:O80792 PRIDE:O80792 EnsemblPlants:AT2G07750.1
            GeneID:815422 KEGG:ath:AT2G07750 GeneFarm:994 TAIR:At2g07750
            InParanoid:O80792 OMA:FRKTALK PhylomeDB:O80792
            ProtClustDB:CLSN2713541 Genevestigator:O80792 GermOnline:AT2G07750
            Uniprot:O80792
        Length = 845

 Score = 226 (84.6 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 44/100 (44%), Positives = 60/100 (60%)

Query:    50 MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
             MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E
Sbjct:    76 MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGHPDSGE 135

Query:   110 AVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 148
                K       +S  E +K LADRF + G  DLW ++DGP
Sbjct:   136 KTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGP 175

 Score = 44 (20.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query:   166 GVVHSVKPYGLIASKRNDLQSKEDN-ENGN 194
             GV+ +   +G    ++ND  ++ED+ E GN
Sbjct:   270 GVIRNKGLFGRRKFRKNDSSTEEDSDEEGN 299


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       200   0.00087  111 3  11 23  0.40    33
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  602 (64 KB)
  Total size of DFA:  188 KB (2106 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.44u 0.21s 22.65t   Elapsed:  00:00:01
  Total cpu time:  22.44u 0.21s 22.65t   Elapsed:  00:00:01
  Start:  Fri May 10 07:37:21 2013   End:  Fri May 10 07:37:22 2013

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