BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027268
         (225 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O80792|RH33_ARATH Putative DEAD-box ATP-dependent RNA helicase 33 OS=Arabidopsis
           thaliana GN=RH33 PE=3 SV=1
          Length = 845

 Score = 88.6 bits (218), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 13/106 (12%)

Query: 50  MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPW- 108
           MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +      W 
Sbjct: 76  MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKM------WG 129

Query: 109 --EAVEKAPNLFS----VSADEQVKVLADRFQRPGGFDLWTESDGP 148
             ++ EK   L      +S  E +K LADRF + G  DLW ++DGP
Sbjct: 130 HPDSGEKTAKLKQSHGPMSPKEHIKTLADRFMKAGADDLWNDNDGP 175


>sp|Q9C8S9|RH48_ARATH Probable DEAD-box ATP-dependent RNA helicase 48 OS=Arabidopsis
           thaliana GN=RH48 PE=3 SV=1
          Length = 798

 Score = 87.4 bits (215), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 1/100 (1%)

Query: 50  MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
           MGGGPRT+PGG++KWQWKRM  KK ++     L +E+ +YE R R E++A +       E
Sbjct: 26  MGGGPRTFPGGLNKWQWKRMHEKKAREKENKLLDQEKQLYEARIRTEIRAKMWGNPDSGE 85

Query: 110 AVEKAPNLFS-VSADEQVKVLADRFQRPGGFDLWTESDGP 148
              K+      +S  E +K LADRF + G  D W E+DGP
Sbjct: 86  KTAKSKQSHGPMSPKEHIKTLADRFMKAGAEDFWNENDGP 125


>sp|Q6K7R9|RH48_ORYSJ DEAD-box ATP-dependent RNA helicase 48 OS=Oryza sativa subsp.
           japonica GN=Os02g0826100 PE=2 SV=1
          Length = 811

 Score = 77.0 bits (188), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 57/101 (56%), Gaps = 7/101 (6%)

Query: 50  MGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWE 109
           MGGGPRT+PGG+SKWQ KRM  K  +   +  L  E+ +Y  R R+E++A+     R   
Sbjct: 1   MGGGPRTFPGGLSKWQHKRMHEKLARHKERGLLRHEKQLYLARLRSEIRAS-----RLPA 55

Query: 110 AVEKAPNLFS--VSADEQVKVLADRFQRPGGFDLWTESDGP 148
           A    P+      S+   ++ LADRF  PG  DLW E DGP
Sbjct: 56  AGASPPDDGDGPTSSRAHIRALADRFLLPGAEDLWNEDDGP 96


>sp|Q8IUG5|MY18B_HUMAN Unconventional myosin-XVIIIb OS=Homo sapiens GN=MYO18B PE=1 SV=1
          Length = 2567

 Score = 33.1 bits (74), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 48   IRMGGGPRTYPGGVSKWQWKRMQAKKGKQLLKARL--CRERHIYEMRKRAELKAAVSELE 105
            I++    R   GG  +WQ +   A+   + L+ RL  C ER   E+  R EL+  + EL+
Sbjct: 1502 IQLNDLERNPTGGADEWQMRFDCAQMENEFLRKRLQQCEERLDSELTARKELEQKLGELQ 1561

Query: 106  RPWEAVEK 113
              ++  +K
Sbjct: 1562 SAYDGAKK 1569


>sp|Q8NCX0|CC150_HUMAN Coiled-coil domain-containing protein 150 OS=Homo sapiens GN=CCDC150
            PE=2 SV=2
          Length = 1101

 Score = 32.0 bits (71), Expect = 3.4,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)

Query: 72   KKGKQLLKARLCRE-----RHIYEMRKRAE--LKAAVSELERPWEAVEKAPNLFSVSADE 124
            +K +Q L+ R C+E     RH+ + ++  E  LK A  E E+    +E+A   F    D 
Sbjct: 983  RKIRQELENR-CQELEETVRHLKKCKEATENTLKEASVESEQITANLEEAHRWFKHRFDG 1041

Query: 125  -QVKVLADRFQRPGGFDLWTESD 146
             Q+++  +R QRP G D W E D
Sbjct: 1042 LQLELTKNRLQRPSGEDRWQEKD 1064


>sp|Q12400|TRM10_YEAST tRNA (guanine(9)-N1)-methyltransferase OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=TRM10 PE=1 SV=1
          Length = 293

 Score = 31.2 bits (69), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 6/79 (7%)

Query: 58  PGGVSKWQWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSEL-----ERPWEAVE 112
           P G+SK QWK+M  ++  +  KA+   ER + + R R E  A + E      E P E + 
Sbjct: 23  PEGMSKKQWKKMCKRQRWEENKAKYNAERRVKKKRLRHERSAKIQEYIDRGEEVPQELI- 81

Query: 113 KAPNLFSVSADEQVKVLAD 131
           + P +     D  ++++ D
Sbjct: 82  REPRINVNQTDSGIEIILD 100


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.130    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,578,089
Number of Sequences: 539616
Number of extensions: 4118253
Number of successful extensions: 10124
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 10091
Number of HSP's gapped (non-prelim): 37
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)