Query 027268
Match_columns 225
No_of_seqs 22 out of 24
Neff 1.9
Searched_HMMs 29240
Date Mon Mar 25 11:59:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027268.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027268hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ibp_A Chromosome partition pr 44.0 56 0.0019 29.3 6.8 52 67-133 69-120 (302)
2 3r9j_C MINE, cell division top 33.1 32 0.0011 24.9 2.9 32 71-102 4-40 (77)
3 3lcn_C MRNA transport factor G 26.4 69 0.0024 20.2 3.2 19 75-93 8-26 (29)
4 3sde_A Paraspeckle component 1 26.1 1.3E+02 0.0043 23.5 5.5 48 52-101 202-253 (261)
5 2f9i_A Acetyl-coenzyme A carbo 23.5 55 0.0019 28.4 3.2 54 90-144 50-103 (327)
6 2pv9_C Proteinase-activated re 22.7 19 0.00067 22.3 0.2 9 53-61 7-15 (26)
7 3bbo_G Ribosomal protein L4; l 18.7 24 0.00084 31.1 -0.0 35 1-35 1-35 (293)
8 2i1j_A Moesin; FERM, coiled-co 18.4 44 0.0015 30.9 1.6 20 71-90 312-331 (575)
9 1u00_A HSC66, chaperone protei 16.2 1.5E+02 0.0051 23.8 4.1 34 59-92 114-156 (227)
10 2qdq_A Talin-1; dimerisation d 15.4 1.3E+02 0.0045 20.8 3.1 24 78-101 14-38 (50)
No 1
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=44.04 E-value=56 Score=29.34 Aligned_cols=52 Identities=19% Similarity=0.189 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhccCCCCCCCChhHHHHHhhhhh
Q 027268 67 KRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRF 133 (225)
Q Consensus 67 KRMqeKKAkqk~k~~L~rErQLYe~R~Raeiraa~~~lerPwe~~~~ap~l~~~sade~iKaLADRF 133 (225)
--||....++++-..+..+..-++.++=.+|+... -| .-+.++.++.|||||
T Consensus 69 ~~mq~~Le~Ere~~~~Rd~~a~~k~~Le~~ierLs----~p-----------gg~~dprL~~LAe~~ 120 (302)
T 3ibp_A 69 EYLQQLLEREREAIVERDEVGARKNAVDEEIERLS----QP-----------GGSEDQRLNALAERF 120 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----SC-----------CCCCCHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----CC-----------CCCCCHHHHHHHHHh
Confidence 46888888886666666666667777777777633 22 345678899999999
No 2
>3r9j_C MINE, cell division topological specificity factor; ATPase, protein complex, bacterial cell division inhibitor; HET: ADP; 4.30A {Escherichia coli} PDB: 1ev0_A
Probab=33.08 E-value=32 Score=24.92 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHH--H---HHHHHHHHHHHHhc
Q 027268 71 AKKGKQLLKARLCRERH--I---YEMRKRAELKAAVS 102 (225)
Q Consensus 71 eKKAkqk~k~~L~rErQ--L---Ye~R~Raeiraa~~ 102 (225)
+.-||++++-.|.+||. + |--.+|.+|-+.++
T Consensus 4 a~vAKeRLqliLahdR~~~~~pd~l~~lk~eIl~VIs 40 (77)
T 3r9j_C 4 ANIAKERLQNIVAERRRSDAEPHYLPQLRKDILEVIC 40 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSSHHHHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 45799999999999997 3 77788999988775
No 3
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=26.40 E-value=69 Score=20.24 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027268 75 KQLLKARLCRERHIYEMRK 93 (225)
Q Consensus 75 kqk~k~~L~rErQLYe~R~ 93 (225)
.+++|.-++..||||+.+.
T Consensus 8 m~lLKKKIEEQr~i~~~~~ 26 (29)
T 3lcn_C 8 MKLLKKKIEEQREILQKTH 26 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4677888899999999874
No 4
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=26.13 E-value=1.3e+02 Score=23.47 Aligned_cols=48 Identities=23% Similarity=0.307 Sum_probs=23.3
Q ss_pred CCcccCCCCcchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027268 52 GGPRTYPGGVSKW----QWKRMQAKKGKQLLKARLCRERHIYEMRKRAELKAAV 101 (225)
Q Consensus 52 GGPRTFPGGvsKW----QWKRMqeKKAkqk~k~~L~rErQLYe~R~Raeiraa~ 101 (225)
-+||.-+.|---+ .||.+++...++.+ .|.++.+..+.+..+|+..+.
T Consensus 202 ~~p~~~~pgs~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~e~l~~~~~~~~ 253 (261)
T 3sde_A 202 QPPRFAQPGTFEFEYASRWKALDEMEKQQRE--QVDRNIREAKEKLEAEMEAAR 253 (261)
T ss_dssp SCSEECCTTSHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccccccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 4465554443222 47777765443322 334444444455556655443
No 5
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=23.49 E-value=55 Score=28.37 Aligned_cols=54 Identities=20% Similarity=0.271 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhcccCCCchhhccCCCCCCCChhHHHHHhhhhhcCCCcccCCCC
Q 027268 90 EMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVKVLADRFQRPGGFDLWTE 144 (225)
Q Consensus 90 e~R~Raeiraa~~~lerPwe~~~~ap~l~~~sade~iKaLADRF~kpGa~DLWn~ 144 (225)
|......+|..++.+ .||+.+.-+-....+.+.|-|..|.|-|..-.+...|.+
T Consensus 50 e~~~~~~~~~~~~~l-~~~~~~~~~~~~~r~~~re~I~~l~D~f~El~~d~~~~~ 103 (327)
T 2f9i_A 50 EASLERETKKIYTNL-KPWDRVQIARLQERPTTLDYIPYIFDSFMELHGDRNFRD 103 (327)
T ss_dssp HHHHHHHHHHHHHSC-CHHHHHHHHTBTTSCCHHHHHHHHCEEEEECCCCSSSCC
T ss_pred HHHHHHHHHHHHhcC-ChhhcccccCCCCCCCHHHHHHHhccceEEecCCCCcCc
Confidence 344444445555443 479876543334455579999999999887666445544
No 6
>2pv9_C Proteinase-activated receptor 4; serine protease, hydrolase; HET: NAG; 3.50A {Mus musculus}
Probab=22.72 E-value=19 Score=22.29 Aligned_cols=9 Identities=56% Similarity=1.206 Sum_probs=6.9
Q ss_pred CcccCCCCc
Q 027268 53 GPRTYPGGV 61 (225)
Q Consensus 53 GPRTFPGGv 61 (225)
|||.|||-.
T Consensus 7 ~P~~~Pg~~ 15 (26)
T 2pv9_C 7 NPRGYPGKF 15 (26)
T ss_dssp EECSCTTTT
T ss_pred CCccCCCCc
Confidence 688999853
No 7
>3bbo_G Ribosomal protein L4; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=18.74 E-value=24 Score=31.06 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=0.0
Q ss_pred CceeeeeeccceeeeeecccCcccccccCCCeeee
Q 027268 1 MALSITASSASVLSFSQSLSSPTQLFLANRPTYVS 35 (225)
Q Consensus 1 m~ls~~~s~~~~~sfs~~~~~~~~~~~~~~~~~l~ 35 (225)
||-+++.+..++|+.|--+.|+...|+.++++.|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (293)
T 3bbo_G 1 MATSTSSSLSLSFFSSSLFSSKSRNFSSKPILKLP 35 (293)
T ss_dssp -----------------------------------
T ss_pred CCccccCcceeeeeeccccccCccccCccchhhcC
Confidence 55554444344444344445555556776666555
No 8
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=18.40 E-value=44 Score=30.87 Aligned_cols=20 Identities=30% Similarity=0.184 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 027268 71 AKKGKQLLKARLCRERHIYE 90 (225)
Q Consensus 71 eKKAkqk~k~~L~rErQLYe 90 (225)
+|..|+.++.+|.+|+++.+
T Consensus 312 ~~~~~~~e~~~l~~~~~~~~ 331 (575)
T 2i1j_A 312 EKLAKQAQREKLQLEIAARE 331 (575)
T ss_dssp HHHHHHHHHTTCCSCCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45667777778877777665
No 9
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1
Probab=16.19 E-value=1.5e+02 Score=23.75 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=22.6
Q ss_pred CCcchhHHHHHHHHH---------HHHHHHHHHHHHHHHHHHH
Q 027268 59 GGVSKWQWKRMQAKK---------GKQLLKARLCRERHIYEMR 92 (225)
Q Consensus 59 GGvsKWQWKRMqeKK---------Akqk~k~~L~rErQLYe~R 92 (225)
+|+++=+=.+|.++. .+++..++-.-|.-+|++|
T Consensus 114 ~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~ 156 (227)
T 1u00_A 114 YGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLH 156 (227)
T ss_dssp SCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 678988888875543 3444445555677888887
No 10
>2qdq_A Talin-1; dimerisation domain, C-terminal actin binding site, ABS3, latch domain, structural protein; 2.20A {Mus musculus}
Probab=15.42 E-value=1.3e+02 Score=20.75 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHh
Q 027268 78 LKARLCRERHIYEMRKR-AELKAAV 101 (225)
Q Consensus 78 ~k~~L~rErQLYe~R~R-aeiraa~ 101 (225)
+-+.|..||+|=++|++ +.||.+-
T Consensus 14 qe~iLr~ErELEeAr~~La~iR~~k 38 (50)
T 2qdq_A 14 QEEMLRKERELEEARKKLAQIRQQQ 38 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999986 6677553
Done!