Query 027268
Match_columns 225
No_of_seqs 22 out of 24
Neff 1.9
Searched_HMMs 13730
Date Mon Mar 25 11:59:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027268.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027268hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1q9ca_ a.22.1.3 (A:) Histone 36.9 5.4 0.00039 30.9 1.2 26 55-80 71-96 (172)
2 d1s69a_ a.1.1.1 (A:) Protozoan 20.5 30 0.0022 23.0 2.5 24 49-72 52-75 (123)
3 d1uhva2 c.1.8.3 (A:14-359) Bet 17.5 23 0.0017 25.2 1.4 28 124-151 119-154 (346)
4 d1l8ya_ a.21.1.1 (A:) Nucleola 16.8 31 0.0023 24.3 2.0 19 71-92 53-71 (84)
5 d1ea0a3 d.153.1.1 (A:1-422) Al 15.8 38 0.0027 28.8 2.6 18 84-101 144-161 (422)
6 d2ncda_ c.37.1.9 (A:) Kinesin 13.5 91 0.0066 24.5 4.3 21 66-90 8-28 (368)
7 d1us3a2 c.1.8.3 (A:243-606) Xy 13.0 18 0.0013 28.2 -0.3 22 124-145 120-144 (364)
8 d1x63a2 g.39.1.3 (A:45-76) Fou 11.9 23 0.0016 21.3 0.0 12 156-167 8-19 (32)
9 d1x74a1 c.123.1.1 (A:2-360) 2- 10.3 55 0.004 24.8 1.8 67 59-128 237-314 (359)
10 d1vbua1 c.1.8.3 (A:517-840) Xy 9.8 49 0.0036 24.8 1.3 25 123-147 109-134 (324)
No 1
>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.86 E-value=5.4 Score=30.85 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=17.7
Q ss_pred ccCCCCcchhHHHHHHHHHHHHHHHH
Q 027268 55 RTYPGGVSKWQWKRMQAKKGKQLLKA 80 (225)
Q Consensus 55 RTFPGGvsKWQWKRMqeKKAkqk~k~ 80 (225)
+||||.+.||-|+-++++......|+
T Consensus 71 ~~fp~~i~~~ai~~a~~~~~srs~ra 96 (172)
T d1q9ca_ 71 KSFPHPIDKWAIADAQSAIEKRKRRN 96 (172)
T ss_dssp HSSCTTHHHHHHHHHHHHHC------
T ss_pred HhCCchHHHHHHHHHHHHHhcccccc
Confidence 58999999999998888776555443
No 2
>d1s69a_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Cyanobacteria (Synechocystis sp.), pcc 6803 [TaxId: 1143]}
Probab=20.49 E-value=30 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.262 Sum_probs=14.9
Q ss_pred eeCCCcccCCCCcchhHHHHHHHH
Q 027268 49 RMGGGPRTYPGGVSKWQWKRMQAK 72 (225)
Q Consensus 49 rMGGGPRTFPGGvsKWQWKRMqeK 72 (225)
-+=|||..|+|---+=..++|+++
T Consensus 52 ~~~GGp~~Y~g~~m~~~H~~l~~~ 75 (123)
T d1s69a_ 52 YAFGGTDKYDGRYMREAHKELVEN 75 (123)
T ss_dssp HHTTSSSCCSSCCHHHHHHHHHHH
T ss_pred HHcCcCCCCCCccHHHHHHhhhhc
Confidence 344779999986444445555543
No 3
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]}
Probab=17.51 E-value=23 Score=25.25 Aligned_cols=28 Identities=21% Similarity=0.517 Sum_probs=20.0
Q ss_pred HHHHHhhhhhcC--------CCcccCCCCCCCCccc
Q 027268 124 EQVKVLADRFQR--------PGGFDLWTESDGPQMF 151 (225)
Q Consensus 124 e~iKaLADRF~k--------pGa~DLWn~~DGP~~f 151 (225)
+.++++++||.. --..++|||-|++.-+
T Consensus 119 ~~v~~~~~~y~~~~~~~~~~~~~~evwNEp~~~~~~ 154 (346)
T d1uhva2 119 DLVKAVLHHFISRYGIEEVLKWPFEIWNEPNLKEFW 154 (346)
T ss_dssp HHHHHHHHHHHHHHCHHHHTTCCEEESSCTTSTTTS
T ss_pred HHHHHHHHHHHhhcCcccccccccccccCcccccCC
Confidence 456778887742 3468999999987643
No 4
>d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.79 E-value=31 Score=24.32 Aligned_cols=19 Identities=42% Similarity=0.436 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 027268 71 AKKGKQLLKARLCRERHIYEMR 92 (225)
Q Consensus 71 eKKAkqk~k~~L~rErQLYe~R 92 (225)
-|||-+-+|+ -||.|+|||
T Consensus 53 ikkaaedqkr---yerel~emr 71 (84)
T d1l8ya_ 53 IKKAAEDQKR---YERELSEMR 71 (84)
T ss_dssp HHHHHHHHHH---HHHHHHTTS
T ss_pred HHHHHHHHHH---HHHHHHHhc
Confidence 4566666665 367788776
No 5
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=15.79 E-value=38 Score=28.79 Aligned_cols=18 Identities=28% Similarity=0.331 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027268 84 RERHIYEMRKRAELKAAV 101 (225)
Q Consensus 84 rErQLYe~R~Raeiraa~ 101 (225)
=||+||.+|++.|.+...
T Consensus 144 fEr~Ly~~Rk~~e~~~~~ 161 (422)
T d1ea0a3 144 FELDLYIIRRRIEKAVKG 161 (422)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 599999999999987654
No 6
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=13.51 E-value=91 Score=24.49 Aligned_cols=21 Identities=10% Similarity=0.330 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027268 66 WKRMQAKKGKQLLKARLCRERHIYE 90 (225)
Q Consensus 66 WKRMqeKKAkqk~k~~L~rErQLYe 90 (225)
++|+-|+.+.|++.+ +.||||
T Consensus 8 ~~~~~~~~~~~~~~~----~~~~~~ 28 (368)
T d2ncda_ 8 LLRCNEQQAAELETC----KEQLFQ 28 (368)
T ss_dssp GTHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHH
Confidence 456666666666654 788888
No 7
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]}
Probab=12.99 E-value=18 Score=28.18 Aligned_cols=22 Identities=18% Similarity=0.549 Sum_probs=17.3
Q ss_pred HHHHHhhhhhcCCCcc---cCCCCC
Q 027268 124 EQVKVLADRFQRPGGF---DLWTES 145 (225)
Q Consensus 124 e~iKaLADRF~kpGa~---DLWn~~ 145 (225)
+||++++.||...|-. |+|||-
T Consensus 120 ~~I~~vv~ry~~~G~I~~WDVvNEp 144 (364)
T d1us3a2 120 THITTIVDHYEAKGNLVSWDVVNEA 144 (364)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEECC
T ss_pred HHHHHHHHhhccCCceEEEEEeccc
Confidence 6999999999644544 888984
No 8
>d1x63a2 g.39.1.3 (A:45-76) Four and a half LIM domains protein 1, FHL-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.93 E-value=23 Score=21.26 Aligned_cols=12 Identities=42% Similarity=0.811 Sum_probs=9.5
Q ss_pred CCCCccccCCcc
Q 027268 156 GLPSARFFPKGV 167 (225)
Q Consensus 156 ~~psarffpk~~ 167 (225)
-..|..|||||-
T Consensus 8 ~igsgsffpkg~ 19 (32)
T d1x63a2 8 VIGTGSFFPKGE 19 (32)
T ss_dssp CCTTSCEEEETT
T ss_pred hcccccccCCCC
Confidence 457789999984
No 9
>d1x74a1 c.123.1.1 (A:2-360) 2-methylacyl-CoA racemase Mcr {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=10.27 E-value=55 Score=24.78 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=39.3
Q ss_pred CCcchhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCchhhccCCCCCCCChhHHHH
Q 027268 59 GGVSKWQWKRMQAKKGKQ-----------LLKARLCRERHIYEMRKRAELKAAVSELERPWEAVEKAPNLFSVSADEQVK 127 (225)
Q Consensus 59 GGvsKWQWKRMqeKKAkq-----------k~k~~L~rErQLYe~R~Raeiraa~~~lerPwe~~~~ap~l~~~sade~iK 127 (225)
+.++.++|+++-+-...+ ....+.+.-...+..+-++|+.+.+...-.||.++..... +-.|+|++
T Consensus 237 ~~~~~~~~~~~~~~l~~d~~~~~~~~~~~~~~el~~~l~~~~~~~t~~e~~~~l~~~gvp~~pV~~~~e---v~~dpq~~ 313 (359)
T d1x74a1 237 GAIEPQFYAAMLAGLGLDAAELPPQNDRARWPELRALLTEAFASHDRDHWGAVFANSDACVTPVLAFGE---VHNEPHII 313 (359)
T ss_dssp ECCSHHHHHHHHHHHTCCGGGSCCTTCGGGHHHHHHHHHHHHHTSCHHHHHHHTSSSSSCEEECCCHHH---HTTCHHHH
T ss_pred eeCCHHHHHhhhhcccchhhhhhhhhhhhhhHHHHHHHHHHhhhhhHHHHHHHHHhCCCeEEecCCHHH---HHhCHHHH
Confidence 456678888876543211 1111112223456667788888888888888876653332 44577876
Q ss_pred H
Q 027268 128 V 128 (225)
Q Consensus 128 a 128 (225)
+
T Consensus 314 ~ 314 (359)
T d1x74a1 314 E 314 (359)
T ss_dssp H
T ss_pred H
Confidence 5
No 10
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]}
Probab=9.78 E-value=49 Score=24.77 Aligned_cols=25 Identities=20% Similarity=0.426 Sum_probs=19.5
Q ss_pred hHHHHHhhhhhc-CCCcccCCCCCCC
Q 027268 123 DEQVKVLADRFQ-RPGGFDLWTESDG 147 (225)
Q Consensus 123 de~iKaLADRF~-kpGa~DLWn~~DG 147 (225)
.++|++++.||- +--.-|+|||-+.
T Consensus 109 ~~~i~~v~~ry~g~v~~WdV~NEp~~ 134 (324)
T d1vbua1 109 EDHIKTVVSHFKGRVKIWDVVNEAVS 134 (324)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEESCBC
T ss_pred HHHHHHHHHhcCCCceEEEEeccccc
Confidence 467888999996 6778899999533
Done!