BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027269
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine
pdb|3R4G|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R54|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R56|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R57|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3R59|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RCF|A Chain A, Human Cyclophilin D Complexed With N-[(4-Aminophenyl)
Sulfonyl]benzamide
pdb|3RCG|A Chain A, Human Cyclophilin D Complexed With Dimethylformamide
pdb|3RCI|X Chain X, Human Cyclophilin D Complexed With
5-Methyl-1,2-Oxazol-3-Amine
pdb|3RCK|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RCL|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RD9|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDA|X Chain X, Human Cyclophilin D Complexed With A Fragment
pdb|3RDB|A Chain A, Human Cyclophilin D Complexed With A Fragment
pdb|3RDC|A Chain A, Human Cyclophilin D Complexed With An Inhibitor
Length = 166
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 87/116 (75%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 7 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 66
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+K W
Sbjct: 67 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 122
>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution
pdb|2BIU|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A
Resolution, Dmso Complex
Length = 165
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 87/116 (75%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+K W
Sbjct: 66 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121
>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
pdb|2Z6W|B Chain B, Crystal Structure Of Human Cyclophilin D In Complex With
Cyclosporin A
Length = 165
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 87/116 (75%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 6 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 65
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+K W
Sbjct: 66 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 121
>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A
Resolution At Room Temperature
Length = 164
Score = 168 bits (425), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 79/116 (68%), Positives = 87/116 (75%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
V+ DVD GKP GR+V+ L DVVPKTAENFRALCTGEKG+GYKG +FHR+I FM Q
Sbjct: 5 VYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAG 64
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYGS F DE+F LKHVGPGVLSMANAGPNTNGSQFFICT+K W
Sbjct: 65 DFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDW 120
>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor
Length = 184
Score = 164 bits (415), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 78/131 (59%), Positives = 89/131 (67%)
Query: 89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 148
S +++ Q V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG
Sbjct: 10 SGRENLYFQGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKG 69
Query: 149 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 208
FHRII FM Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGS
Sbjct: 70 SCFHRIIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGS 129
Query: 209 QFFICTVKVRW 219
QFFICT K W
Sbjct: 130 QFFICTAKTEW 140
>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a
Length = 164
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 85/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K +W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 120
>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form
Length = 169
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 85/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 6 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 65
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K +W
Sbjct: 66 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 125
>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form
pdb|2X2A|B Chain B, Free Acetyl-Cypa Trigonal Form
Length = 165
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 85/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K +W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTKW 121
>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2
pdb|4DGA|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGA|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-1
Ca(O-Loop) Complex
pdb|4DGB|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: Hiv-2 Ca
Cyclophilin- Binding Loop Complex
pdb|4DGC|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|C Chain C, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|D Chain D, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
pdb|4DGC|E Chain E, Trimcyp Cyclophilin Domain From Macaca Mulatta:
Cyclosporin A Complex
Length = 165
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGNFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMA|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|A Chain A, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|C Chain C, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|E Chain E, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|G Chain G, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|I Chain I, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|K Chain K, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|M Chain M, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|O Chain O, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|Q Chain Q, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|2RMB|S Chain S, Crystal Structures Of Cyclophilin A Complexed With
Cyclosporin A And
N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine
Cyclosporin A
pdb|1CWC|A Chain A, Improved Binding Affinity For Cyclophilin A By A
Cyclosporin Derivative Singly Modified At Its Effector
Domain
pdb|1CWB|A Chain A, The X-Ray Structure Of (Mebm2t)1-Cyclosporin Complexed
With Cyclophilin A Provides An Explanation For Its
Anomalously High Immunosuppressive Activity
pdb|1CWA|A Chain A, X-Ray Structure Of A Monomeric Cyclophilin A-Cyclosporin A
Crystal Complex At 2.1 Angstroms Resolution
pdb|1MIK|A Chain A, The Role Of Water Molecules In The Structure-Based Design
Of (5- Hydroxynorvaline)-2-Cyclosporin: Synthesis,
Biological Activity, And Crystallographic Analysis With
Cyclophilin A
pdb|1FGL|A Chain A, Cyclophilin A Complexed With A Fragment Of Hiv-1 Gag
Protein
pdb|1AK4|A Chain A, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1AK4|B Chain B, Human Cyclophilin A Bound To The Amino-Terminal Domain Of
Hiv-1 Capsid
pdb|1CWF|A Chain A, Human Cyclophilin A Complexed With 2-Val Cyclosporin
pdb|1CWH|A Chain A, Human Cyclophilin A Complexed With 3-D-Ser Cyclosporin
pdb|1CWK|A Chain A, Human Cyclophilin A Complexed With 1-(6,7-Dihydro)mebmt
2-Val 3-D-(2- S-Methyl)sarcosine Cyclosporin
pdb|1CWL|A Chain A, Human Cyclophilin A Complexed With 4 4-Hydroxy-Meleu
Cyclosporin
pdb|1CWM|A Chain A, Human Cyclophilin A Complexed With 4 Meile Cyclosporin
pdb|1CWI|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-(N-Methyl)-D-Alanine Cyclosporin
pdb|1CWJ|A Chain A, Human Cyclophilin A Complexed With 2-Val
3-S-Methyl-Sarcosine Cyclosporin
pdb|1VBS|A Chain A, Structure Of Cyclophilin Complexed With (D)ala Containing
Tetrapeptide
pdb|1VBT|A Chain A, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1VBT|B Chain B, Structure Of Cyclophilin Complexed With Sulfur-Substituted
Tetrapeptide Aapf
pdb|1M63|C Chain C, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|G Chain G, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1MF8|C Chain C, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
pdb|1NMK|A Chain A, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1NMK|B Chain B, The Sanglifehrin-Cyclophilin Interaction: Degradation
Work, Synthetic Macrocyclic Analogues, X-Ray Crystal
Structure And Binding Data
pdb|1M9C|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9C|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type Complex.
pdb|1M9D|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9D|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) O-Type Chimera Complex.
pdb|1M9F|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9F|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m Complex.
pdb|1M9X|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9X|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,A88m,G89a Complex.
pdb|1M9Y|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|E Chain E, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1M9Y|F Chain F, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a,G89a Complex.
pdb|1W8L|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8M|A Chain A, Enzymatic And Structural Characterisation Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1W8V|A Chain A, Enzymatic And Structural Characterization Of Non Peptide
Ligand Cyclophilin Complexes
pdb|1YND|A Chain A, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1YND|B Chain B, Structure Of Human Cyclophilin A In Complex With The Novel
Immunosuppressant Sanglifehrin A At 1.6a Resolution
pdb|1ZKF|A Chain A, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1ZKF|B Chain B, Cyrstal Structure Of Human Cyclophilin-A In Complex With
Suc-Agpf-Pna
pdb|1OCA|A Chain A, Human Cyclophilin A, Unligated, Nmr, 20 Structures
pdb|2CPL|A Chain A, Similarities And Differences Between Human Cyclophilin A
And Other Beta-Barrel Structures. Structural Refinement
At 1.63 Angstroms Resolution
pdb|3CYS|A Chain A, Determination Of The Nmr Solution Structure Of The
Cyclophilin A- Cyclosporin A Complex
pdb|3K0M|A Chain A, Cryogenic Structure Of Cypa
pdb|3K0N|A Chain A, Room Temperature Structure Of Cypa
pdb|3ODI|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODI|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin E- Isa247
pdb|3ODL|A Chain A, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|C Chain C, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|E Chain E, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|G Chain G, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|I Chain I, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|K Chain K, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|M Chain M, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|O Chain O, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|Q Chain Q, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
pdb|3ODL|S Chain S, Crystal Structure Of Cyclophilin A In Complex With
Voclosporin Z- Isa247
Length = 165
Score = 161 bits (408), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With
Cyclophilin A
Length = 173
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 10 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 69
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 70 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 129
>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin
pdb|1CWO|A Chain A, Human Cyclophilin A Complexed With Thr2, Leu5, D-Hiv8,
Leu10 Cyclosporin
Length = 165
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
pdb|2X83|D Chain D, Evolutionary Basis Of Hiv Restriction By The
Antiretroviral Trimcyp
Length = 163
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 61 CQGGDFTHHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|M Chain M, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|O Chain O, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|Q Chain Q, Acetyl-Cypa:cyclosporine Complex
pdb|2X2C|S Chain S, Acetyl-Cypa:cyclosporine Complex
pdb|2X2D|B Chain B, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
pdb|2X2D|C Chain C, Acetyl-Cypa:hiv-1 N-Term Capsid Domain Complex
Length = 165
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro
pdb|4CYH|A Chain A, Cyclophilin A Complexed With Dipeptide His-Pro
pdb|3CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ser-Pro
pdb|2CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Ala-Pro
pdb|1RMH|A Chain A, Recombinant Cyclophilin A From Human T Cell
pdb|1RMH|B Chain B, Recombinant Cyclophilin A From Human T Cell
pdb|1AWQ|A Chain A, Cypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWR|A Chain A, Cypa Complexed With Hagpia
pdb|1AWR|B Chain B, Cypa Complexed With Hagpia
pdb|1AWR|C Chain C, Cypa Complexed With Hagpia
pdb|1AWR|D Chain D, Cypa Complexed With Hagpia
pdb|1AWR|E Chain E, Cypa Complexed With Hagpia
pdb|1AWR|F Chain F, Cypa Complexed With Hagpia
pdb|1AWU|A Chain A, Cypa Complexed With Hvgpia (Pseudo-Symmetric Monomer)
pdb|1AWV|A Chain A, Cypa Complexed With Hvgpia
pdb|1AWV|B Chain B, Cypa Complexed With Hvgpia
pdb|1AWV|C Chain C, Cypa Complexed With Hvgpia
pdb|1AWV|D Chain D, Cypa Complexed With Hvgpia
pdb|1AWV|E Chain E, Cypa Complexed With Hvgpia
pdb|1AWV|F Chain F, Cypa Complexed With Hvgpia
Length = 164
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 60
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 120
>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex.
pdb|1M9E|B Chain B, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-
Terminal Domain (1-146) M-Type H87a Complex
Length = 164
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant
pdb|4DGE|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
pdb|4DGE|B Chain B, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c
Mutant, Hiv-1 Ca(O-Loop) Complex
Length = 165
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 76/120 (63%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGNFTHCNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 86/120 (71%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
VT KVFFDV IG K GRIV+GLFG VVPKT ENF AL TGEKGYGYKG FHR+IKDFM
Sbjct: 14 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYGYKGSKFHRVIKDFM 73
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
IQ +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI K W
Sbjct: 74 IQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 133
>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr
pdb|3K0P|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr
pdb|3K0Q|A Chain A, Cryogenic Structure Of Cypa Mutant Ser99thr (2)
Length = 165
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+L+MANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILTMANAGPNTNGSQFFICTAKTEW 121
>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys
Length = 165
Score = 160 bits (405), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 75/120 (62%), Positives = 84/120 (70%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FH+II FM
Sbjct: 2 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHKIIPGFM 61
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LSMANAGPNTNGSQFFICT K W
Sbjct: 62 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEW 121
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 159 bits (403), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 79/120 (65%), Positives = 87/120 (72%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
VT KVFFDV IG K GRIV+GLFG+VVPKT ENF AL TGEKGYGYKG FHR+IKDFM
Sbjct: 6 VTDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFM 65
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
IQ +SIYG +F DE+F LKH G G +SMANAGP+TNGSQFFI K W
Sbjct: 66 IQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTW 125
>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent
Loop Cyclophilin From Caenorhabditis Elegans
pdb|1E3B|A Chain A, Cyclophilin 3 From C.Elegans Complexed With Aup(Et)3
pdb|1E8K|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ala-Pro
pdb|2IGV|A Chain A, Cyclophilin 3 Complexed With Dipeptide Ser-Pro
pdb|2IGW|A Chain A, Cyclophilin 3 Complexed With Dipeptide Gly-Pro
Length = 173
Score = 158 bits (400), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/125 (63%), Positives = 87/125 (69%), Gaps = 7/125 (5%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRI 154
+KVFFD+ IGGK +GRIVM L+ DVVPKTA NFRALCTGE G G +KG FHRI
Sbjct: 4 SKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRI 63
Query: 155 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 214
I +FMIQ SIYG F DE+F KH GPGVLSMANAGPNTNGSQFF+CT
Sbjct: 64 IPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTGPGVLSMANAGPNTNGSQFFLCT 123
Query: 215 VKVRW 219
VK W
Sbjct: 124 VKTEW 128
>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer)
pdb|1AWT|A Chain A, Secypa Complexed With Hagpia
pdb|1AWT|B Chain B, Secypa Complexed With Hagpia
pdb|1AWT|C Chain C, Secypa Complexed With Hagpia
pdb|1AWT|D Chain D, Secypa Complexed With Hagpia
pdb|1AWT|E Chain E, Secypa Complexed With Hagpia
pdb|1AWT|F Chain F, Secypa Complexed With Hagpia
Length = 164
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 74/120 (61%), Positives = 82/120 (68%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
V VFFD+ + G+P GR+ LF D VPKTAENFRAL TGEKG+GYKG FHRII F
Sbjct: 1 VNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSCFHRIIPGFX 60
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
Q SIYG FEDE+F+LKH GPG+LS ANAGPNTNGSQFFICT K W
Sbjct: 61 CQGGDFTRHNGTGGKSIYGEKFEDENFILKHTGPGILSXANAGPNTNGSQFFICTAKTEW 120
>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes
Hyperelastosis Cutis In The American Quarter Horse
Length = 185
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 86/123 (69%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
+ KVT KV+FD+ IG + GR+V+GLFG VPKT +NF AL TGEKG+GYK FHR+IK
Sbjct: 8 RPKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIK 67
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
DFMIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVK
Sbjct: 68 DFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVK 127
Query: 217 VRW 219
W
Sbjct: 128 TAW 130
>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B
Length = 185
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/121 (61%), Positives = 85/121 (70%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 158
KVT KV+FD+ IG + GR+V+GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 10 KVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFGYKDSKFHRVIKDF 69
Query: 159 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVR 218
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVK
Sbjct: 70 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 129
Query: 219 W 219
W
Sbjct: 130 W 130
>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni
pdb|2CMT|A Chain A, The Structure Of Reduced Cyclophilin A From S. Mansoni
Length = 172
Score = 153 bits (387), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 73/123 (59%), Positives = 85/123 (69%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
Q + +VFFD+ IG AGRIVM L D+VP+TAENFRALCTGE+G+GY C FHR+I
Sbjct: 6 QKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFGYHNCCFHRVIP 65
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
FM Q SIYG F+DE+F L+H G GVLSMAN+GPNTNGSQFFICT K
Sbjct: 66 QFMCQGGDFVKGDGTGGKSIYGRKFDDENFQLRHEGFGVLSMANSGPNTNGSQFFICTTK 125
Query: 217 VRW 219
W
Sbjct: 126 CDW 128
>pdb|1CYN|A Chain A, Cyclophilin B Complexed With
[d-(Cholinylester)ser8]-Cyclosporin
Length = 178
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 84/121 (69%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 158
KVT KV+FD+ IG + GR++ GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 3 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 62
Query: 159 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVR 218
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVK
Sbjct: 63 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 122
Query: 219 W 219
W
Sbjct: 123 W 123
>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution
pdb|3ICI|A Chain A, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
pdb|3ICI|B Chain B, Crystal Structure Of Cyclophilin B In Complex With
Calmegin Fragment
Length = 188
Score = 153 bits (386), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 84/121 (69%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 158
KVT KV+FD+ IG + GR++ GLFG VPKT +NF AL TGEKG+GYK FHR+IKDF
Sbjct: 13 KVTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDF 72
Query: 159 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVR 218
MIQ SIYG F DE+F LKH GPG +SMANAG +TNGSQFFI TVK
Sbjct: 73 MIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTA 132
Query: 219 W 219
W
Sbjct: 133 W 133
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 152 bits (383), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 77/121 (63%), Positives = 84/121 (69%), Gaps = 8/121 (6%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 154
+VFFDVDIGG+ GRIV+ LF D+VPKTAENFRALCTGEKG G +KGC FHRI
Sbjct: 17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRI 76
Query: 155 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 214
IK FMIQ SIYG FEDE+F KH G+LSMANAG NTNGSQFFI T
Sbjct: 77 IKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITT 136
Query: 215 V 215
V
Sbjct: 137 V 137
>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human
Peptidylprolyl Isomerase E Isoform 1
Length = 173
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 72/123 (58%), Positives = 85/123 (69%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
+A+ +V+ D+ IG KPAGRI M L DVVP TAENFR LCT EKG+G+KG SFHRII
Sbjct: 7 KARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIP 66
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
FM Q SIYG F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+ K
Sbjct: 67 QFMCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDK 126
Query: 217 VRW 219
W
Sbjct: 127 TDW 129
>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1IST|B Chain B, Crystal Structure Of Yeast Cyclophilin A, Cpr1
pdb|1VDN|A Chain A, Crystal Structure Of Yeast Cyclophilin A Complexed With
Ace-Ala-Ala- Pro-Ala-7-Amino-4-Methylcoumarin
Length = 162
Score = 150 bits (379), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 83/118 (70%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 161
++V+FDV+ G+P GR+V L+ D+VPKTAENFRALCTGEKG+GY G FHR+I DFM+Q
Sbjct: 2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSPFHRVIPDFMLQ 61
Query: 162 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYG F DE+F H PG+LSMANAGPNTNGSQFFI TV W
Sbjct: 62 GGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPW 119
>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis
Mala S 6 Allergen, A Member Of The Cyclophilin Pan-
Allergen Family
Length = 162
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/118 (61%), Positives = 80/118 (67%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 161
+ VFFD+ G P G I LF DVVPKTA NFRALCTGEKG+GY G FHR+I DFM+Q
Sbjct: 2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAGSHFHRVIPDFMLQ 61
Query: 162 XXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYG+ F DE+F LKH PG+LSMANAGPNTNGSQFFI TV W
Sbjct: 62 GGDFTAGNGTGGKSIYGAKFADENFQLKHNKPGLLSMANAGPNTNGSQFFITTVVTSW 119
>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33)
Length = 165
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/117 (60%), Positives = 82/117 (70%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQX 162
+V+ D+ IG KPAGRI M L DVVP TAENFR LCT EKG+G+KG SFHRII FM Q
Sbjct: 5 QVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFGFKGSSFHRIIPQFMCQG 64
Query: 163 XXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYG F+DE+F+LKH GPG+LSMAN+GPNTNGSQFF+ K W
Sbjct: 65 GDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSMANSGPNTNGSQFFLTCDKTDW 121
>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans
Length = 182
Score = 147 bits (370), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 73/121 (60%), Positives = 81/121 (66%)
Query: 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF 158
KVT +V+FD++IGGKP GRIV+GLFG VPKTA NF L KG GY G FHR+I DF
Sbjct: 4 KVTDRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEGYPGSKFHRVIADF 63
Query: 159 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVR 218
MIQ SIYG F DE+F LKH G G LSMANAG +TNGSQFFI TVK
Sbjct: 64 MIQGGDFTRGDGTGGRSIYGEKFADENFKLKHYGAGWLSMANAGADTNGSQFFITTVKTP 123
Query: 219 W 219
W
Sbjct: 124 W 124
>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major
Length = 183
Score = 143 bits (361), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 76/127 (59%), Positives = 82/127 (64%), Gaps = 10/127 (7%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRII 155
KVFFD+ I K AGRIVM L+ D VPKTAENFRALCTGEKG G YK FHR+I
Sbjct: 9 KVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHRVI 68
Query: 156 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLK---HVGPGVLSMANAGPNTNGSQFFI 212
+FMIQ SIYG++F DESF K H G G LSMANAGPNTNGSQFFI
Sbjct: 69 PNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKAGRHTGLGCLSMANAGPNTNGSQFFI 128
Query: 213 CTVKVRW 219
CT W
Sbjct: 129 CTAATPW 135
>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl
Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A
Resolution
Length = 174
Score = 142 bits (359), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/123 (56%), Positives = 82/123 (66%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
+A+ +V+ D+ IG KPAGRI L DVVP TAENFR LCT EKG+G+KG SFHRII
Sbjct: 8 KARSNPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFGFKGSSFHRIIP 67
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
F Q SIYG F+DE+F+LKH GPG+LS AN+GPNTNGSQFF+ K
Sbjct: 68 QFXCQGGDFTNHNGTGGKSIYGKKFDDENFILKHTGPGLLSXANSGPNTNGSQFFLTCDK 127
Query: 217 VRW 219
W
Sbjct: 128 TDW 130
>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|B Chain B, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|C Chain C, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XO7|D Chain D, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi
pdb|1XQ7|A Chain A, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|B Chain B, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
pdb|1XQ7|C Chain C, Cyclophilin From Trypanosoma Cruzi Bound To Cyclosporin A
Length = 166
Score = 139 bits (351), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 84/120 (70%), Gaps = 1/120 (0%)
Query: 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFM 159
VT KV+FD+ IG +P GR+V+GLFG+ VPKT ENF+ L +GE G+GYKG FHR+I++FM
Sbjct: 4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKGSIFHRVIRNFM 63
Query: 160 IQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
IQ SIYG+ F+DE+ +KH G +SMANAGPN+NGSQFF+ T W
Sbjct: 64 IQGGDFTNFDGTGGKSIYGTRFDDENLKIKHF-VGAVSMANAGPNSNGSQFFVTTAPTPW 122
>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120
pdb|2POY|A Chain A, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|B Chain B, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
pdb|2POY|C Chain C, Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl
Cis-Trans Isomerase Cgd2_4120 In Complex With
Cyclosporin A
Length = 186
Score = 139 bits (350), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 74/123 (60%), Positives = 78/123 (63%), Gaps = 7/123 (5%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG-------YKGCSFHRIIK 156
V+FD+ IG PAGRI M LF D VP TAENFRALCTGEKG G Y G FHRII
Sbjct: 22 VYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIP 81
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
FMIQ SIYGS F DE+FV H P +LSMANAGPNTNGSQFFI TV
Sbjct: 82 QFMIQGGDFTRGDGTGGESIYGSKFRDENFVYTHDAPFLLSMANAGPNTNGSQFFITTVP 141
Query: 217 VRW 219
W
Sbjct: 142 CPW 144
>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania
Donovani
pdb|3EOV|A Chain A, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
pdb|3EOV|B Chain B, Crystal Structure Of Cyclophilin From Leishmania Donovani
Ligated With Cyclosporin A
Length = 172
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
+ +VT KV+FDV I +P GRI +GLFG P T ENFR LCTGE G+GYK FHR+I+
Sbjct: 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQ 66
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
+FMIQ SIYG F DE+ +KH G LSMANAGPNTNGSQFFI T
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 217 VRW 219
W
Sbjct: 126 TPW 128
>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From
Leishmania Donovani
Length = 172
Score = 136 bits (342), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 79/123 (64%), Gaps = 1/123 (0%)
Query: 97 QAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
+ +VT KV+FDV I +P GRI +GLFG P T ENFR LCTGE G+GYK FHR+I+
Sbjct: 7 EPEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFGYKDSIFHRVIQ 66
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
+FMIQ SIYG F DE+ +KH G LSMANAGPNTNGSQFFI T
Sbjct: 67 NFMIQGGDFTNFDGTGGKSIYGEKFADENLNVKHF-VGALSMANAGPNTNGSQFFITTAP 125
Query: 217 VRW 219
W
Sbjct: 126 TPW 128
>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa
Length = 164
Score = 135 bits (341), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
VFF++ I KP GRIV L+ + VPKTA+NFR L TG+ G+GYK FHR+I FM+Q
Sbjct: 6 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 65
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYG F DE+F +KH PG+LSMANAG NTNGSQFFI TV W
Sbjct: 66 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 121
>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
pdb|3PMP|B Chain B, Crystal Structure Of Cyclophilin A From Moniliophthora
Perniciosa In Complex With Cyclosporin A
Length = 164
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 64/116 (55%), Positives = 76/116 (65%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
VFF++ I KP GRIV L+ + VPKTA+NFR L TG+ G+GYK FHR+I FM+Q
Sbjct: 5 VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIPQFMLQGG 64
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
SIYG F DE+F +KH PG+LSMANAG NTNGSQFFI TV W
Sbjct: 65 DFTRHNGTGGKSIYGEKFADENFQVKHTKPGLLSMANAGANTNGSQFFITTVPTSW 120
>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|B Chain B, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|C Chain C, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|D Chain D, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|E Chain E, Structure Of The C-terminal Domain Of Nup358
pdb|4I9Y|F Chain F, Structure Of The C-terminal Domain Of Nup358
Length = 167
Score = 135 bits (340), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/120 (57%), Positives = 81/120 (67%), Gaps = 1/120 (0%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXX 163
VFFDV G+P GRI M LF ++VP+TAENFRALCTGEKG+G+K FHR+I DF+ Q
Sbjct: 9 VFFDVCADGEPLGRITMELFSNIVPRTAENFRALCTGEKGFGFKNSIFHRVIPDFVCQGG 68
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223
SIYG FEDE+F +KH GPG+LSMAN G NTN SQF I T+K L F
Sbjct: 69 DITKHDGTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQNTNNSQFVI-TLKKAEHLDF 127
>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20
pdb|1MZW|A Chain A, Crystal Structure Of A U4U6 SNRNP COMPLEX BETWEEN HUMAN
Spliceosomal Cyclophilin H And A U4U6-60k Peptide
Length = 177
Score = 133 bits (334), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/127 (54%), Positives = 80/127 (62%), Gaps = 5/127 (3%)
Query: 98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE-----KGYGYKGCSFH 152
+ V VFFDV IGG+ GR+ + LF DVVPKTAENFR CTGE GYKG +FH
Sbjct: 7 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKDGVPIGYKGSTFH 66
Query: 153 RIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFI 212
R+IKDFMIQ SIY F DE+F L+H PG+LSMAN+GP+TNG QFFI
Sbjct: 67 RVIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSGPSTNGCQFFI 126
Query: 213 CTVKVRW 219
K W
Sbjct: 127 TCSKCDW 133
>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain
Of Human Cyclophilin G
Length = 198
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 76/120 (63%), Gaps = 8/120 (6%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 154
+ FFD+ I +PAGR+V LF DV PKT ENFR LCTGEKG G YK C FHR+
Sbjct: 28 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 87
Query: 155 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 214
+KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI T
Sbjct: 88 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNAAFLLSMANRGKDTNGSQFFITT 147
>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G In Complex With Cyclosporin A
Length = 179
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 76/120 (63%), Gaps = 8/120 (6%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 154
+ FFD+ I +PAGR+V LF DV PKT ENFR LCTGEKG G YK C FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRV 70
Query: 155 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 214
+KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI T
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With
Cyclosporin A
Length = 170
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/124 (54%), Positives = 75/124 (60%), Gaps = 6/124 (4%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 155
+KVFFD+ I AGRI+ LF D+ P+T ENFRALCTGEK YK FHRII
Sbjct: 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 156 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 215
FM Q SIYG SF DE+F +KH PG+LSMANAGPNTN SQFFI V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFFITLV 123
Query: 216 KVRW 219
W
Sbjct: 124 PCPW 127
>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|B Chain B, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|C Chain C, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
pdb|3K2C|D Chain D, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase
From Encephalitozoon Cuniculi At 1.9 A Resolution
Length = 193
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/131 (51%), Positives = 79/131 (60%), Gaps = 6/131 (4%)
Query: 89 SMAKDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKG 148
SMAK+ + V+FDV + GRIVM L D+VPKTA+NFR LC KG GYKG
Sbjct: 21 SMAKEA------SGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKG 74
Query: 149 CSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGS 208
+FHRII FM+Q SIYG F DE+F LKH G+LSMAN G +TNGS
Sbjct: 75 STFHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCGAHTNGS 134
Query: 209 QFFICTVKVRW 219
QFFI K +W
Sbjct: 135 QFFITLGKTQW 145
>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|C Chain C, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|E Chain E, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|G Chain G, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|I Chain I, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|K Chain K, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|M Chain M, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1C5F|O Chain O, Crystal Structure Of The Cyclophilin-Like Domain From
Brugia Malayi Complexed With Cyclosporin A
pdb|1A33|A Chain A, Peptidylprolyl Isomerase, Cyclophilin-Like Domain From
Brugia Malayi
pdb|1A58|A Chain A, Cyclophilin From Brugia Malayi
Length = 177
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 77/127 (60%), Gaps = 8/127 (6%)
Query: 96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YK 147
+ K +VF DV I G AGRIVM L+ D+ P+T NF LCTG G G YK
Sbjct: 1 MSKKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYK 60
Query: 148 GCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNG 207
G +FHR+IK+FMIQ SIYG F+DE FV+KH P V+SMAN GPNTNG
Sbjct: 61 GSTFHRVIKNFMIQGGDFTKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKGPNTNG 120
Query: 208 SQFFICT 214
SQFFI T
Sbjct: 121 SQFFITT 127
>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
pdb|1QNH|B Chain B, Plasmodium Falciparum Cyclophilin (Double Mutant)
Complexed With Cyclosporin A
Length = 170
Score = 125 bits (315), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 74/124 (59%), Gaps = 6/124 (4%)
Query: 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK------GYGYKGCSFHRII 155
+KVFFD+ I AGRI+ LF D+ P+T ENFRALCTGEK YK FHRII
Sbjct: 4 SKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSRGKNLHYKNSIFHRII 63
Query: 156 KDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTV 215
FM Q SIYG SF DE+F +KH PG+LSMANAGPNTN SQF I V
Sbjct: 64 PQFMCQGGDITNGNGSGGESIYGRSFTDENFNMKHDQPGLLSMANAGPNTNSSQFLITLV 123
Query: 216 KVRW 219
W
Sbjct: 124 PCPW 127
>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain
Of Human Cyclophilin G
Length = 179
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 75/120 (62%), Gaps = 8/120 (6%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRI 154
+ FFD+ I +PAGR+V LF DV PKT ENFR LCTGEKG G YK FHR+
Sbjct: 11 RCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSXLFHRV 70
Query: 155 IKDFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 214
+KDFM+Q SIYG FEDESF +KH +LSMAN G +TNGSQFFI T
Sbjct: 71 VKDFMVQGGDFSEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRGKDTNGSQFFITT 130
>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii
Length = 229
Score = 122 bits (307), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 75/121 (61%), Gaps = 5/121 (4%)
Query: 104 VFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY-----GYKGCSFHRIIKDF 158
VF D+++G G+ LF ++VPKT+ENFR CTGE GYK FHR+IK+F
Sbjct: 62 VFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVNNLPVGYKNTIFHRVIKEF 121
Query: 159 MIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVR 218
MIQ +SIYG F+DE+F +KH G+LSMAN+GPNTNG QFFI T K
Sbjct: 122 MIQGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSGPNTNGCQFFITTKKCE 181
Query: 219 W 219
W
Sbjct: 182 W 182
>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
pdb|2C3B|B Chain B, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin
Reveals 3d Domain Swapping Of A Central Element
Length = 172
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 63/123 (51%), Positives = 72/123 (58%), Gaps = 5/123 (4%)
Query: 102 TKVFFDVD-----IGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIK 156
++VFFDV+ GRIV LF VPKTA+NFR LC G GY+ +FHRII
Sbjct: 3 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRESTFHRIIP 62
Query: 157 DFMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVK 216
+FMIQ SIYG F DE+F KH G+LSMANAGPNTNGSQFFI T
Sbjct: 63 NFMIQGGDFTRGNGTGGRSIYGDKFADENFSRKHDKKGILSMANAGPNTNGSQFFITTAV 122
Query: 217 VRW 219
W
Sbjct: 123 TSW 125
>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
pdb|2HE9|B Chain B, Structure Of The Peptidylprolyl Isomerase Domain Of The
Human Nk-Tumour Recognition Protein
Length = 192
Score = 115 bits (287), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 75/117 (64%), Gaps = 8/117 (6%)
Query: 106 FDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYG--------YKGCSFHRIIKD 157
FD++I +P GRI+ LF D+ PKT +NF LC+GEKG G YKG +FHR++K+
Sbjct: 24 FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKN 83
Query: 158 FMIQXXXXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICT 214
FMIQ SIYG F+DE+F+LKH +LSMAN G +TNGSQFFI T
Sbjct: 84 FMIQGGDFSEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRGKHTNGSQFFITT 140
>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of
Skip
Length = 203
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 176 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
IYG FEDE LK G G+L+MANAGP+TNGSQFF+ +W
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW 121
>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And
Insights Into Its Interaction With Skip
Length = 174
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 176 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
IYG FEDE LK G G+L+MANAGP+TNGSQFF+ +W
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW 121
>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With
Cyclosporine A Suggests A Binding Mode For Skip
Length = 166
Score = 90.1 bits (222), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 61/105 (58%), Gaps = 5/105 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G IV+ L+ PKT +NF L +GY Y G FHRIIKDFMIQ S
Sbjct: 21 GIIVLELYWKHAPKTCKNFAELA--RRGY-YNGTKFHRIIKDFMIQGGDPTGTGRGGA-S 76
Query: 176 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
IYG FEDE LK G G+L+MANAGP+TNGSQFF+ +W
Sbjct: 77 IYGKQFEDELHPDLKFTGAGILAMANAGPDTNGSQFFVTLAPTQW 121
>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J
pdb|2OK3|A Chain A, X-Ray Structure Of Human Cyclophilin J At 2.0 Angstrom
Length = 161
Score = 84.0 bits (206), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 174
G I + +F + PKT ENF ALC Y GC FHR IK FM+Q
Sbjct: 9 VGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 64
Query: 175 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFI 212
SI+G FEDE S LKH GV+SMAN GPNTNGSQFFI
Sbjct: 65 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFI 103
>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
pdb|2OJU|B Chain B, X-Ray Structure Of Complex Of Human Cyclophilin J With
Cyclosporin A
Length = 167
Score = 84.0 bits (206), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 174
G I + +F + PKT ENF ALC Y GC FHR IK FM+Q
Sbjct: 15 VGDIKIEVFCERTPKTCENFLALCASNY---YNGCIFHRNIKGFMVQTGDPTGTGRGGN- 70
Query: 175 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFI 212
SI+G FEDE S LKH GV+SMAN GPNTNGSQFFI
Sbjct: 71 SIWGKKFEDEYSEYLKHNVRGVVSMANNGPNTNGSQFFI 109
>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|B Chain B, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
pdb|2A2N|C Chain C, Crystal Structure Of The Peptidylprolyl Isomerase Domain
Of Human Ppwd1
Length = 176
Score = 81.6 bits (200), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 55/105 (52%), Gaps = 5/105 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G I LF PKT ENF C + Y G +FHRIIK FMIQ S
Sbjct: 31 GDIHTKLFPVECPKTVENF---CVHSRNGYYNGHTFHRIIKGFMIQTGDPTGTGMGGE-S 86
Query: 176 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
I+G FEDE L+H P LSMANAG NTNGSQFFI V W
Sbjct: 87 IWGGEFEDEFHSTLRHDRPYTLSMANAGSNTNGSQFFITVVPTPW 131
>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative
Cyclosporin- Binding Domain
Length = 160
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/105 (46%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G I + LF KT +NF GY Y C FHR+IK FM+Q S
Sbjct: 15 GDIHISLFYKECKKTVQNFSVHSIN--GY-YNNCIFHRVIKHFMVQTGDPSGDGTGGE-S 70
Query: 176 IYGSSFEDESFV-LKHVGPGVLSMANAGPNTNGSQFFICTVKVRW 219
I+G+ FEDE F L H P ++SMAN GPNTNGSQFFI TV W
Sbjct: 71 IWGNEFEDEFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPW 115
>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
pdb|1ZKC|B Chain B, Crystal Structure Of The Cyclophiln_ring Domain Of Human
Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B
Length = 197
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G + + L D+ PKT ENF LC K + Y G FHR I++F+IQ S
Sbjct: 29 GDLNLELHCDLTPKTCENFIRLC---KKHYYDGTIFHRSIRNFVIQGGDPTGTGTGGE-S 84
Query: 176 IYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFI 212
+G F+DE L H G G+LSMAN+GPN+N SQFFI
Sbjct: 85 YWGKPFKDEFRPNLSHTGRGILSMANSGPNSNRSQFFI 122
>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein
Length = 196
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 128 PKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXISIYGSSFEDE-SF 186
PKT NF LC E G+ Y FHR+I +F+IQ SIYG FEDE +
Sbjct: 60 PKTCLNFYTLC--EMGF-YDNTIFHRVIPNFVIQGGDPTGTGKGGK-SIYGEYFEDEINK 115
Query: 187 VLKHVGPGVLSMANAGPNTNGSQFFI 212
LKH G G+LSM+N GPNTN SQFFI
Sbjct: 116 ELKHTGAGILSMSNNGPNTNSSQFFI 141
>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis.
pdb|1W74|B Chain B, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A,
Ppia, Rv0009, From Mycobacterium Tuberculosis
Length = 191
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 52/114 (45%), Gaps = 15/114 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYG------------YKGCSFHRIIKDFMIQXX 163
G I + LFG+ PKT NF L G K Y Y G FHR+I+ FMIQ
Sbjct: 33 GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92
Query: 164 XXXXXXXXXXISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKV 217
+ F E L+ P +L+MANAGP TNGSQFFI K
Sbjct: 93 DPTGTGRGGPGYKFADEFHPE---LQFDKPYLLAMANAGPGTNGSQFFITVGKT 143
>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660
pdb|2QER|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin
Type Peptidyl- Prolyl Cis-Trans Isomerase Cgd2_1660 In
The Presence Of Dipeptide Ala-Pro
Length = 185
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 54/102 (52%), Gaps = 9/102 (8%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G + LF PK +NF AL GY YK FH+ IK F+IQ S
Sbjct: 26 GDLKFELFCSQCPKACKNFLALSA--SGY-YKNTIFHKNIKGFIIQGGDPTGTGKGGE-S 81
Query: 176 IYGSSFEDESF-VLKHVGPGVLSMANAG----PNTNGSQFFI 212
IYG F+DE + LK+ G+LSMA+ G PNTNGSQFFI
Sbjct: 82 IYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFI 123
>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The
Serologically Defined Colon Cancer Antigen 10 From Homo
Sapiens
Length = 185
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 115 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXI 174
AG I + L+ PK NF LC + Y Y FHR++ F++Q
Sbjct: 33 AGDIDIELWSKEAPKACRNFIQLCL--EAY-YDNTIFHRVVPGFIVQGGDPTGTGSGGE- 88
Query: 175 SIYGSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFF 211
SIYG+ F+DE L+ G+++MANAG + NGSQFF
Sbjct: 89 SIYGAPFKDEFHSRLRFNRRGLVAMANAGSHDNGSQFF 126
>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|B Chain B, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|C Chain C, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
pdb|3BO7|D Chain D, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl
Cis-Trans Isomerase, 541.M00136
Length = 201
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G + + L D+ P+ ++F LC + + FHR I++FMIQ
Sbjct: 16 GSLNIELHADMAPRACDSFLRLCAVKY---FDDTIFHRCIRNFMIQGGRAELRQPSKKKE 72
Query: 176 IY-----------GSSFEDE-SFVLKHVGPGVLSMANAGPNTNGSQFFI 212
+ G+ FEDE L H G GVLSMAN G ++N S+FFI
Sbjct: 73 VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGVLSMANDGKHSNLSEFFI 121
>pdb|3T1U|A Chain A, Crystal Structure Of The Complex Of Cyclophilin-a Enzyme
From Azotobacter Vinelandii With Sucafpfpna Peptide
Length = 163
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 161
G I + LF D P+TA NF K Y G FHR+I FMIQ
Sbjct: 9 GTITLKLFADKAPETAANFEQYV---KDGHYDGTIFHRVIDGFMIQ 51
>pdb|2NUL|A Chain A, Peptidylprolyl Isomerase From E. Coli
pdb|2RS4|A Chain A, Nmr Strucure Of Stereo-Array Isotope Labelled (Sail)
Peptidyl-Prolyl Cis-Trans Isomerase From E. Coli (Eppib)
Length = 164
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 161
G IV+ F D P+T +NF C +G+ Y FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQ 51
>pdb|1LOP|A Chain A, Cyclophilin A Complexed With
Succinyl-Ala-Pro-Ala-P-Nitroanilide
Length = 164
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 161
G IV+ F D P+T +NF C +G+ Y FHR+I FMIQ
Sbjct: 9 GDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQ 51
>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin,
49.m03261
Length = 232
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 19/118 (16%)
Query: 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQXXXXXXXXXXXXIS 175
G + + L+ P NF LC +GY Y FHR++KDF++Q +
Sbjct: 31 GDLDVELWARECPLACRNFVQLCL--EGY-YVNTIFHRVVKDFIVQGGDPTGTGRGGADT 87
Query: 176 IY-GSSFEDESF-VLKHVGPGVLSMANAGPN--------------TNGSQFFICTVKV 217
+ G F+ E+ LK G++ +AN G + TNG+QFFI +
Sbjct: 88 TFDGKPFDVETHPRLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARA 145
>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin
Length = 234
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 17/75 (22%)
Query: 103 KVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGE------KGYG----------- 145
+V+ D+ + + GR+ + LF D P ENF L G+ G G
Sbjct: 16 RVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRT 75
Query: 146 YKGCSFHRIIKDFMI 160
Y+GC FH ++ + I
Sbjct: 76 YEGCKFHNVLHNNYI 90
>pdb|3S6M|A Chain A, The Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase
From Burkholderia Pseudomallei
Length = 167
Score = 35.4 bits (80), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 128 PKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQ 161
PKT ENF L +KG+ Y G FHR+I FMIQ
Sbjct: 25 PKTVENF--LNYVKKGH-YDGTIFHRVINGFMIQ 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,949,160
Number of Sequences: 62578
Number of extensions: 216702
Number of successful extensions: 569
Number of sequences better than 100.0: 74
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 454
Number of HSP's gapped (non-prelim): 74
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 50 (23.9 bits)