Query 027269
Match_columns 225
No_of_seqs 165 out of 1426
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 07:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0546 HSP90 co-chaperone CPR 100.0 6.9E-47 1.5E-51 345.1 10.3 124 100-223 7-138 (372)
2 KOG0880 Peptidyl-prolyl cis-tr 100.0 3.2E-46 6.9E-51 317.5 13.1 130 94-223 32-162 (217)
3 KOG0879 U-snRNP-associated cyc 100.0 2.9E-40 6.3E-45 267.8 9.0 128 96-223 5-137 (177)
4 COG0652 PpiB Peptidyl-prolyl c 100.0 7.9E-38 1.7E-42 260.1 11.3 109 111-225 4-115 (158)
5 KOG0111 Cyclophilin-type pepti 100.0 1.3E-38 2.8E-43 275.9 6.7 125 99-223 134-258 (298)
6 KOG0881 Cyclophilin type pepti 100.0 2.2E-38 4.8E-43 254.3 6.6 113 102-223 10-123 (164)
7 cd01926 cyclophilin_ABH_like c 100.0 5.3E-37 1.1E-41 255.2 14.8 122 102-224 1-128 (164)
8 PLN03149 peptidyl-prolyl isome 100.0 5.3E-36 1.2E-40 254.6 14.0 124 101-224 18-146 (186)
9 PTZ00060 cyclophilin; Provisio 100.0 7.7E-36 1.7E-40 252.9 14.5 123 101-224 15-144 (183)
10 PTZ00221 cyclophilin; Provisio 100.0 1.2E-35 2.7E-40 262.6 14.4 124 98-225 49-181 (249)
11 cd01927 cyclophilin_WD40 cyclo 100.0 2.3E-34 4.9E-39 236.1 12.2 109 112-224 3-112 (148)
12 cd01922 cyclophilin_SpCYP2_lik 100.0 5.4E-34 1.2E-38 233.5 12.3 110 112-225 3-113 (146)
13 cd01928 Cyclophilin_PPIL3_like 100.0 7.1E-34 1.5E-38 234.4 12.2 109 112-224 6-115 (153)
14 cd01925 cyclophilin_CeCYP16-li 100.0 2E-33 4.4E-38 235.5 13.3 117 99-224 3-120 (171)
15 KOG0883 Cyclophilin type, U bo 100.0 4.8E-34 1E-38 262.8 8.7 142 75-223 244-391 (518)
16 cd01923 cyclophilin_RING cyclo 100.0 3.6E-33 7.9E-38 231.4 13.0 110 112-225 5-115 (159)
17 KOG0882 Cyclophilin-related pe 100.0 6.2E-34 1.3E-38 265.8 6.8 118 102-223 400-518 (558)
18 KOG0865 Cyclophilin type pepti 100.0 2E-33 4.3E-38 235.5 7.6 124 100-223 2-128 (167)
19 cd01921 cyclophilin_RRM cyclop 100.0 3.6E-32 7.7E-37 226.7 12.3 110 112-225 3-121 (166)
20 KOG0884 Similar to cyclophilin 100.0 9.3E-32 2E-36 215.1 6.9 109 112-224 6-115 (161)
21 KOG0885 Peptidyl-prolyl cis-tr 100.0 2.6E-31 5.6E-36 243.5 9.1 123 92-223 3-126 (439)
22 cd01920 cyclophilin_EcCYP_like 100.0 1.4E-30 3E-35 215.1 11.8 104 113-222 4-108 (155)
23 PRK10903 peptidyl-prolyl cis-t 100.0 2.5E-30 5.5E-35 220.6 13.2 104 113-222 35-139 (190)
24 cd01924 cyclophilin_TLP40_like 100.0 1.6E-30 3.4E-35 219.4 11.7 109 112-224 3-146 (176)
25 PRK10791 peptidyl-prolyl cis-t 100.0 2.6E-30 5.7E-35 215.7 11.4 104 112-221 5-109 (164)
26 cd00317 cyclophilin cyclophili 100.0 2.3E-28 5.1E-33 197.5 12.2 107 113-224 4-111 (146)
27 PF00160 Pro_isomerase: Cyclop 100.0 1.1E-27 2.3E-32 195.2 12.7 114 105-224 1-119 (155)
28 KOG0415 Predicted peptidyl pro 99.9 6.7E-25 1.5E-29 200.7 8.7 110 112-225 6-124 (479)
29 PRK00969 hypothetical protein; 91.4 0.74 1.6E-05 45.2 7.6 76 116-202 378-453 (508)
30 TIGR03268 methan_mark_3 putati 90.7 0.99 2.2E-05 44.2 7.7 77 115-202 374-450 (503)
31 COG4070 Predicted peptidyl-pro 81.5 3.2 6.9E-05 40.0 5.6 22 117-138 377-398 (512)
32 KOG0882 Cyclophilin-related pe 76.5 1.9 4.2E-05 42.0 2.5 102 115-220 111-219 (558)
33 COG4070 Predicted peptidyl-pro 59.0 21 0.00046 34.6 5.5 64 116-203 203-269 (512)
34 PF12903 DUF3830: Protein of u 55.7 14 0.0003 30.9 3.3 44 116-165 8-53 (147)
35 PRK00969 hypothetical protein; 48.4 47 0.001 32.9 6.1 77 113-215 201-280 (508)
36 TIGR03268 methan_mark_3 putati 47.4 55 0.0012 32.4 6.4 80 113-215 198-277 (503)
37 PF06138 Chordopox_E11: Chordo 33.8 2.6E+02 0.0057 22.9 7.3 48 103-157 5-61 (130)
No 1
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.9e-47 Score=345.11 Aligned_cols=124 Identities=69% Similarity=1.112 Sum_probs=120.9
Q ss_pred ccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCc--------ccCCCeEEEeecCceeecCccccCCCC
Q 027269 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKDFMIQGGDFTEGDGT 171 (225)
Q Consensus 100 ~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~--------~Y~gt~FhRVip~f~IQgGd~~~~~g~ 171 (225)
.+++|||||+|++++.||||||||.++||+||+||+.||+|++|. .|+|+.||||||+|||||||++.++|+
T Consensus 7 ~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs~gnGt 86 (372)
T KOG0546|consen 7 TNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFSEGNGT 86 (372)
T ss_pred CCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccccCCCC
Confidence 378999999999999999999999999999999999999999985 499999999999999999999999999
Q ss_pred CCccccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 172 GGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 172 gg~si~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
||.+|||..|+||+|.++|+++++|||||.||||||||||||+.++|||||.
T Consensus 87 GGeSIYG~~FdDEnF~lKHdrpflLSMAN~GpNTNgSQFFITT~p~PHLdGk 138 (372)
T KOG0546|consen 87 GGESIYGEKFDDENFELKHDRPFLLSMANRGPNTNGSQFFITTVPTPHLDGK 138 (372)
T ss_pred CcccccccccccccceeccCcchhhhhhcCCCCCCCcceEEeCCCCCCcCCc
Confidence 9999999999999999999999999999999999999999999999999995
No 2
>KOG0880 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-46 Score=317.53 Aligned_cols=130 Identities=72% Similarity=1.180 Sum_probs=127.2
Q ss_pred hhhcccccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhh-CCCCcccCCCeEEEeecCceeecCccccCCCCC
Q 027269 94 VELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCT-GEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTG 172 (225)
Q Consensus 94 ~~~~~~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~-G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~g 172 (225)
.+.++++|.+|||||.++++..|||+|+||++.+|+||+||.+||+ |++|++|.|++||||+|+|||||||++.++|+|
T Consensus 32 ~~~~p~vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~gY~gS~FhRVi~nfmIQGGd~t~g~gtG 111 (217)
T KOG0880|consen 32 YEPGPKVTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYGYKGSKFHRVIPNFMIQGGDFTKGDGTG 111 (217)
T ss_pred cCCCCcceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcccCCceeeeeecCceeecCccccCCCCC
Confidence 4677899999999999999999999999999999999999999999 899999999999999999999999999999999
Q ss_pred CccccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 173 GISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 173 g~si~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
|.+|||+.|+|||+.|+|+++|.|||||.|||+||||||||+..+|||||.
T Consensus 112 g~SIyG~~F~DENf~LkH~rpG~lSMAn~GpDtNGsQFfItT~~t~wLDGk 162 (217)
T KOG0880|consen 112 GKSIYGEKFPDENFKLKHDRPGRLSMANAGPDTNGSQFFITTVKTPWLDGK 162 (217)
T ss_pred CeEeecCCCCCccceeecCCCceEeeeccCCCCCCceEEEEecCCccccCc
Confidence 999999999999999999999999999999999999999999999999996
No 3
>KOG0879 consensus U-snRNP-associated cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-40 Score=267.85 Aligned_cols=128 Identities=63% Similarity=1.047 Sum_probs=121.8
Q ss_pred hcccccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCC-----CcccCCCeEEEeecCceeecCccccCCC
Q 027269 96 LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK-----GYGYKGCSFHRIIKDFMIQGGDFTEGDG 170 (225)
Q Consensus 96 ~~~~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~k-----G~~Y~gt~FhRVip~f~IQgGd~~~~~g 170 (225)
+..+.++.|||||++++.++|||+||||.+.+|+|+|||++.|+||- -.||+++.|||||++|||||||+.+++|
T Consensus 5 ~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r~~g~PiGYK~~tFHRvIkdFMiQgGDFv~gDG 84 (177)
T KOG0879|consen 5 LRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYRKDGVPIGYKNSTFHRVIKDFMIQGGDFVNGDG 84 (177)
T ss_pred ccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccccCCccccccccchHHHhhhheeccCceecCCC
Confidence 34556899999999999999999999999999999999999999963 2479999999999999999999999999
Q ss_pred CCCccccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 171 TGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 171 ~gg~si~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
+|-.+|||..|+||++.++|+++|+|||||+|+++||.|||||..++.||||+
T Consensus 85 tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG~~tNGCQFFITcakcdfLD~K 137 (177)
T KOG0879|consen 85 TGVASIYGSTFPDENFTLKHDGPGLLSMANSGKDTNGCQFFITCAKCDFLDGK 137 (177)
T ss_pred ceEEEEcCCCCCCcceeeecCCCceeeccccCCCCCCceEEEEecccccccCc
Confidence 99999999999999999999999999999999999999999999999999996
No 4
>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-38 Score=260.05 Aligned_cols=109 Identities=50% Similarity=0.798 Sum_probs=101.9
Q ss_pred CCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccC
Q 027269 111 GGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKH 190 (225)
Q Consensus 111 ~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H 190 (225)
..|+.|+|+||||++.||+||+||++|| +.|| |+|+.||||||+|||||||++.++|.+|+ ++.|++|++...|
T Consensus 4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~--~~g~-Ydg~~FHRVi~~FmiQgGd~~~~~g~gg~---~~~f~~E~~~~~~ 77 (158)
T COG0652 4 LETNKGDITIELYPDKAPKTVANFLQLV--KEGF-YDGTIFHRVIPGFMIQGGDPTGGDGTGGP---GPPFKDENFALNG 77 (158)
T ss_pred eeccCCCEEEEECCCcCcHHHHHHHHHH--HcCC-CCCceEEEeecCceeecCCCCCCCCCCCC---CCCCccccccccc
Confidence 3679999999999999999999999999 6899 99999999999999999999977788888 4789999988888
Q ss_pred CC--ceEEEEecCC-CCCCCceEEEEcCCCCcccCCCC
Q 027269 191 VG--PGVLSMANAG-PNTNGSQFFICTVKVRWQLCFFC 225 (225)
Q Consensus 191 ~~--~G~LsMa~~g-pns~gSQFfItl~~~p~LDg~~~ 225 (225)
++ +|+|||||.+ ||+|+||||||+.++|||||.|.
T Consensus 78 ~~~~~G~lsMA~~g~P~t~~SQFFI~~~~~~~Ld~~yt 115 (158)
T COG0652 78 DRHKRGTLSMARAGDPNSNGSQFFITVVDNPFLDGKYT 115 (158)
T ss_pred ccCCcceEeEcccCCcCCccCeEEEEecCCcccCCCCc
Confidence 77 9999999999 99999999999999999999874
No 5
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-38 Score=275.90 Aligned_cols=125 Identities=66% Similarity=1.073 Sum_probs=122.6
Q ss_pred cccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccC
Q 027269 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG 178 (225)
Q Consensus 99 ~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g 178 (225)
+.++.||+||.|+....|||+++|..+..|+|++||..||+|++||||+|+.||||||.||+||||+++++|+||.+|||
T Consensus 134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfgykgssfhriip~fmcqggdftn~ngtggksiyg 213 (298)
T KOG0111|consen 134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFGYKGSSFHRIIPKFMCQGGDFTNGNGTGGKSIYG 213 (298)
T ss_pred hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccCccccchhhhhhhhhccCCccccCCCCCCccccc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 179 SSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 179 ~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
..|.||+|.|+|+.+|+|||||.|+|+||||||||+..+.||||+
T Consensus 214 kkfddenf~lkht~pgtlsmansgantngsqffict~ktdwldgk 258 (298)
T KOG0111|consen 214 KKFDDENFTLKHTMPGTLSMANSGANTNGSQFFICTEKTDWLDGK 258 (298)
T ss_pred ccccccceeeecCCCceeeccccCCCCCCceEEEEecccccccCc
Confidence 999999999999999999999999999999999999999999996
No 6
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-38 Score=254.32 Aligned_cols=113 Identities=56% Similarity=0.936 Sum_probs=106.6
Q ss_pred ceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCC
Q 027269 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF 181 (225)
Q Consensus 102 ~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~ 181 (225)
+.|+++ |++|.|++|||-+.||+||.||..|+ ++|| |+|..|||||++|||||||++ |+|.||.+|||..|
T Consensus 10 ~~V~Le-----TsmG~i~~ElY~kHaP~TC~NF~eLa--rrgY-Yn~v~FHRii~DFmiQGGDPT-GTGRGGaSIYG~kF 80 (164)
T KOG0881|consen 10 PNVTLE-----TSMGKITLELYWKHAPRTCQNFAELA--RRGY-YNGVIFHRIIKDFMIQGGDPT-GTGRGGASIYGDKF 80 (164)
T ss_pred CeEEEe-----ecccceehhhhhhcCcHHHHHHHHHH--hccc-ccceeeeehhhhheeecCCCC-CCCCCccccccchh
Confidence 345555 58899999999999999999999999 6999 999999999999999999998 89999999999999
Q ss_pred CCCc-cCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 182 EDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 182 ~dE~-~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
+||- ..++|..+|+|||||.|||+|||||||||.++|||||+
T Consensus 81 ~DEi~~dLkhTGAGILsMANaGPnTNgSQFFiTLAPt~~LDGK 123 (164)
T KOG0881|consen 81 EDEIHSDLKHTGAGILSMANAGPNTNGSQFFITLAPTQWLDGK 123 (164)
T ss_pred hhhhhhhhcccchhhhhhhccCCCCCCceEEEEecCccccCCc
Confidence 9995 58999999999999999999999999999999999996
No 7
>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl
Probab=100.00 E-value=5.3e-37 Score=255.15 Aligned_cols=122 Identities=76% Similarity=1.249 Sum_probs=116.0
Q ss_pred ceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCC------cccCCCeEEEeecCceeecCccccCCCCCCcc
Q 027269 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKG------YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 175 (225)
Q Consensus 102 ~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG------~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~s 175 (225)
++|||||.+++++.|+|+||||.+.||++|+||++||+|+++ + |+++.||||+|+|+|||||+..++|.++.+
T Consensus 1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~~~~~-Y~~~~f~Rv~~~~~iq~Gd~~~~~g~~~~~ 79 (164)
T cd01926 1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGGKPFG-YKGSTFHRVIPDFMIQGGDFTRGNGTGGKS 79 (164)
T ss_pred CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcccccc-cCCCEEEEEeCCcEEEcCCccCCCCCCCCc
Confidence 579999999999999999999999999999999999987677 6 999999999999999999988788888899
Q ss_pred ccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 176 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 176 i~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
+||..+++|...++|+++|+|+|++.++++++|||||+|.++|+|||+|
T Consensus 80 ~~g~~~~~e~~~~~h~~~G~lsma~~~~~~~~sqFfIt~~~~~~Ld~~~ 128 (164)
T cd01926 80 IYGEKFPDENFKLKHTGPGLLSMANAGPNTNGSQFFITTVKTPWLDGKH 128 (164)
T ss_pred ccCCccCCCCccccCCCccEEEeeECCCCCcccEEEEEeCCCCccCCcc
Confidence 9999999999899999999999999999999999999999999999986
No 8
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=100.00 E-value=5.3e-36 Score=254.64 Aligned_cols=124 Identities=69% Similarity=1.198 Sum_probs=116.0
Q ss_pred cceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCC---C--cccCCCeEEEeecCceeecCccccCCCCCCcc
Q 027269 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEK---G--YGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS 175 (225)
Q Consensus 101 ~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~k---G--~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~s 175 (225)
+++|||||.+++++.|+|+||||.+.||+||+||++||+|+. | .+|+++.||||+|+|+|||||+..++|.|+.+
T Consensus 18 ~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g~g~~~ 97 (186)
T PLN03149 18 NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKDFMIQGGDFLKGDGTGCVS 97 (186)
T ss_pred CCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCCcEEEcCCcccCCCCCccc
Confidence 578999999999999999999999999999999999997643 3 24999999999999999999988788999999
Q ss_pred ccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 176 IYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 176 i~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
+|+..|++|++.++|+++|+|+|+++++|+++||||||+.++|+|||+|
T Consensus 98 ~~g~~f~~e~~~~~h~~~G~lsma~~g~~s~~sqFfIt~~~~p~Ldg~~ 146 (186)
T PLN03149 98 IYGSKFEDENFIAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKH 146 (186)
T ss_pred ccCCccCCcccccccCCCCEEEEeeCCCCCcccEEEEECCCCCccCCCc
Confidence 9999999999899999999999999999999999999999999999986
No 9
>PTZ00060 cyclophilin; Provisional
Probab=100.00 E-value=7.7e-36 Score=252.87 Aligned_cols=123 Identities=65% Similarity=1.031 Sum_probs=116.2
Q ss_pred cceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhC-------CCCcccCCCeEEEeecCceeecCccccCCCCCC
Q 027269 101 TTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTG-------EKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG 173 (225)
Q Consensus 101 ~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G-------~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg 173 (225)
+++||||+.+++++.|+|+||||.+.||++|+||++||+| +.++ |+|+.||||+|+|+|||||+..++|.++
T Consensus 15 ~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~~g~~~~-Y~~~~fhRvi~~~~iqgGd~~~~~g~~g 93 (183)
T PTZ00060 15 RPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGSSGKNLH-YKGSIFHRIIPQFMCQGGDITNHNGTGG 93 (183)
T ss_pred CCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccccCcccc-cCCeEEEEEcCCCeEEeCCccCCCCCCC
Confidence 6789999999999999999999999999999999999975 3557 9999999999999999999887788899
Q ss_pred ccccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 174 ISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 174 ~si~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
.++||..+++|...++|+++|+|+|++.++|+++||||||+.++|+|||+|
T Consensus 94 ~~~~g~~~~~e~~~~~h~~~G~lsma~~g~~~~~sqFfIt~~~~~~Ldg~~ 144 (183)
T PTZ00060 94 ESIYGRKFTDENFKLKHDQPGLLSMANAGPNTNGSQFFITTVPCPWLDGKH 144 (183)
T ss_pred CcccccccCCccccccCCCCCEEEeccCCCCCCcceEEEEeCCCcccCCCc
Confidence 999999999998899999999999999999999999999999999999986
No 10
>PTZ00221 cyclophilin; Provisional
Probab=100.00 E-value=1.2e-35 Score=262.56 Aligned_cols=124 Identities=35% Similarity=0.510 Sum_probs=112.5
Q ss_pred ccccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCc--------ccCCCeEEEeecC-ceeecCccccC
Q 027269 98 AKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGY--------GYKGCSFHRIIKD-FMIQGGDFTEG 168 (225)
Q Consensus 98 ~~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~--------~Y~gt~FhRVip~-f~IQgGd~~~~ 168 (225)
...+++|||||++++++.|+|+||||.+.||+||+||++||+|++++ +|+|+.||||+++ ||||+||+..
T Consensus 49 ~~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~- 127 (249)
T PTZ00221 49 EQNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS- 127 (249)
T ss_pred CCCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC-
Confidence 34588999999999999999999999999999999999999887643 2999999999986 8999999863
Q ss_pred CCCCCccccCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCCCC
Q 027269 169 DGTGGISIYGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFFC 225 (225)
Q Consensus 169 ~g~gg~si~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~~ 225 (225)
++.++||..|++|++.++|+++|+|+|++.+||+|||||||||.++|||||+++
T Consensus 128 ---~g~s~~G~~f~dE~~~~~h~~~G~LsMan~GpntngSQFfITl~~~p~LDgk~v 181 (249)
T PTZ00221 128 ---FNVSSTGTPIADEGYRHRHTERGLLTMISEGPHTSGSVFGITLGPSPSLDFKQV 181 (249)
T ss_pred ---CCccCCCCcccCccccccCCCCCEEEeCcCCCCCccceEEEECCCCCccCCCce
Confidence 234678999999999999999999999999999999999999999999999863
No 11
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=100.00 E-value=2.3e-34 Score=236.05 Aligned_cols=109 Identities=57% Similarity=0.845 Sum_probs=102.7
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCcc-CccC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH 190 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~-~l~H 190 (225)
.|+.|+|+||||.+.||+||+||++|| +.|| |+|+.||||+|+|+|||||+. ++|.++.++|+..+++|.. .++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~h 78 (148)
T cd01927 3 HTTKGDIHIRLFPEEAPKTVENFTTHA--RNGY-YNNTIFHRVIKGFMIQTGDPT-GDGTGGESIWGKEFEDEFSPSLKH 78 (148)
T ss_pred EeccccEEEEEeCCCCcHHHHHHHHHh--hcCC-cCCcEEEEEcCCcEEEecccC-CCCCCCCcccCCccccccccccCc
Confidence 468999999999999999999999999 5789 999999999999999999986 7888888999999999975 7889
Q ss_pred CCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 191 VGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 191 ~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
+++|+|+|++.+||+++|||||++.++|||||+|
T Consensus 79 ~~~G~l~ma~~~~~s~~SqFfIt~~~~p~Ldg~~ 112 (148)
T cd01927 79 DRPYTLSMANAGPNTNGSQFFITTVATPWLDNKH 112 (148)
T ss_pred CCCeEEEEeeCCCCCCCceEEEEcCCCcccCCCc
Confidence 9999999999999999999999999999999987
No 12
>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2. These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.
Probab=100.00 E-value=5.4e-34 Score=233.48 Aligned_cols=110 Identities=56% Similarity=0.919 Sum_probs=102.7
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCc-cCccC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKH 190 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~-~~l~H 190 (225)
.|+.|+|+||||.+.||++|+||++|| +.|| |+|+.||||+|+|+|||||+. ++|.++.++|+..|++|. ..++|
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~Rvi~~f~iq~Gd~~-~~g~~~~~~~~~~~~~e~~~~~~h 78 (146)
T cd01922 3 ETTMGEITLELYWNHAPKTCKNFYELA--KRGY-YNGTIFHRLIKDFMIQGGDPT-GTGRGGASIYGKKFEDEIHPELKH 78 (146)
T ss_pred EeccccEEEEEcCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEcCCcEEEecccC-CCCCCcccccCCCcccccccCcCC
Confidence 478999999999999999999999999 5789 999999999999999999986 678888899999999995 57889
Q ss_pred CCceEEEEecCCCCCCCceEEEEcCCCCcccCCCC
Q 027269 191 VGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFFC 225 (225)
Q Consensus 191 ~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~~ 225 (225)
+++|+|+|++++|++++||||||+.++|+|||+|.
T Consensus 79 ~~~G~l~ma~~~~~s~~sqFfIt~~~~p~Ld~~~t 113 (146)
T cd01922 79 TGAGILSMANAGPNTNGSQFFITLAPTPWLDGKHT 113 (146)
T ss_pred CCCeEEEEeeCCCCCCccEEEEEcCCCcccCCCCC
Confidence 99999999999999999999999999999999874
No 13
>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.
Probab=100.00 E-value=7.1e-34 Score=234.45 Aligned_cols=109 Identities=56% Similarity=0.858 Sum_probs=102.2
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCcc-CccC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH 190 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~-~l~H 190 (225)
.|+.|+|+||||.+.||+||+||++|| +.|| |+|+.||||+|+|+|||||+. ++|.++.++|+..+++|.. .++|
T Consensus 6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~f~iq~Gd~~-~~g~g~~~~~~~~~~~e~~~~~~~ 81 (153)
T cd01928 6 HTNLGDIKIELFCDDCPKACENFLALC--ASGY-YNGCIFHRNIKGFMVQTGDPT-GTGKGGESIWGKKFEDEFRETLKH 81 (153)
T ss_pred EEccccEEEEEcCCCCcHHHHHHHHHH--hcCc-cCCcEEEEeCCCCEEEccccC-CCCCCCCccCCCccccccccCCCc
Confidence 469999999999999999999999999 5789 999999999999999999986 7788888999999999975 5789
Q ss_pred CCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 191 VGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 191 ~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
+++|+|+|++.++++++|||||+++++|||||+|
T Consensus 82 ~~~G~v~ma~~~~~~~~SqFfI~~~~~~~Ld~~~ 115 (153)
T cd01928 82 DSRGVVSMANNGPNTNGSQFFITYAKQPHLDGKY 115 (153)
T ss_pred CCCcEEEEeeCCCCCcccEEEEEeCCCcccCCCc
Confidence 9999999999999999999999999999999987
No 14
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=100.00 E-value=2e-33 Score=235.50 Aligned_cols=117 Identities=44% Similarity=0.712 Sum_probs=106.6
Q ss_pred cccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccC
Q 027269 99 KVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG 178 (225)
Q Consensus 99 ~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g 178 (225)
+.+.+|.++ |+.|+|+||||.+.+|+||+||++|| ++|| |+|+.||||+|+|+|||||+. ++|.++.++||
T Consensus 3 ~~~~~v~i~-----Ts~G~i~ieL~~~~~P~t~~nF~~L~--~~~~-Y~~~~f~Rvi~~f~iQgGd~~-~~g~g~~s~~g 73 (171)
T cd01925 3 PTTGKVILK-----TTAGDIDIELWSKEAPKACRNFIQLC--LEGY-YDNTIFHRVVPGFIIQGGDPT-GTGTGGESIYG 73 (171)
T ss_pred CcccEEEEE-----EccccEEEEEeCCCChHHHHHHHHHH--hcCC-CCCCEEEEEcCCcEEEccccC-CCCccCcccCC
Confidence 345566555 58999999999999999999999999 6889 999999999999999999987 78889999999
Q ss_pred CCCCCCcc-CccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 179 SSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 179 ~~~~dE~~-~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
..+++|.. .++|+++|+|+|+++++++++|||||+++++|+|||+|
T Consensus 74 ~~~~~E~~~~~~~~~~G~l~ma~~g~~s~~sqFfIt~~~~~~ldg~~ 120 (171)
T cd01925 74 EPFKDEFHSRLRFNRRGLVGMANAGDDSNGSQFFFTLDKADELNNKH 120 (171)
T ss_pred CccCcccccCcCCCCCcEEEECcCCCCCcccEEEEEcCCCcccCCCc
Confidence 99999965 57789999999999999999999999999999999987
No 15
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-34 Score=262.77 Aligned_cols=142 Identities=43% Similarity=0.642 Sum_probs=121.4
Q ss_pred CCCCCCcceeeeccccchh---hh--hcccccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCC
Q 027269 75 KAPSVKYRRMFCVNSMAKD---VE--LQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGC 149 (225)
Q Consensus 75 ~~~s~~~~~~~~~~a~~~~---~~--~~~~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt 149 (225)
+++|.++.-|+-+..-..+ ++ ....+..+-|+.+ .|+.|.|-|||+++.+|++|+||+.|| ++|| |+|+
T Consensus 244 vaasfTSTam~PvT~neaaiid~d~~ry~rvKkkgyvrl---~Tn~G~lNlELhcd~~P~aceNFI~lc--~~gY-Ynnt 317 (518)
T KOG0883|consen 244 VAASFTSTAMTPVTKNEAAIIDEDDVRYTRVKKKGYVRL---VTNHGPLNLELHCDYAPRACENFITLC--KNGY-YNNT 317 (518)
T ss_pred eeceeccceeeecccchhhhccchhhhhccccccceEEE---eccCCceeeEeecCcchHHHHHHHHHH--hccc-ccch
Confidence 4566666666555432211 11 1134556678777 459999999999999999999999999 8999 9999
Q ss_pred eEEEeecCceeecCccccCCCCCCccccCCCCCCCc-cCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 150 SFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 150 ~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~-~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
.|||.|.+||||||||+ |+|.||.+|||++|.||. ..+.|+.||+|||||.|||+|||||||++.++-|||++
T Consensus 318 ~FHRsIrnFmiQGGDPT-GTG~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsGpnTNgSQFFItyrsckhLd~K 391 (518)
T KOG0883|consen 318 IFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFCSNLSHDGRGVLSMANSGPNTNGSQFFITYRSCKHLDNK 391 (518)
T ss_pred HHHHHHHHHeeeCCCCC-CCCCCCccccCCccccccCCCCCcCCcceEeeccCCCCCCCceEEEEecchhhcccc
Confidence 99999999999999998 999999999999999996 57999999999999999999999999999999999974
No 16
>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain. This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.
Probab=100.00 E-value=3.6e-33 Score=231.38 Aligned_cols=110 Identities=53% Similarity=0.819 Sum_probs=102.7
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCc-cCccC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDES-FVLKH 190 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~-~~l~H 190 (225)
.|+.|+|+||||.+.||+||+||++|| +.|| |+|+.||||+|+|+|||||+. ++|.++.++||..+++|. ..++|
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Y~~~~f~rv~~~~~iq~Gd~~-~~g~~~~~~~g~~~~~E~~~~~~h 80 (159)
T cd01923 5 HTNKGDLNLELHCDKAPKACENFIKLC--KKGY-YDGTIFHRSIRNFMIQGGDPT-GTGRGGESIWGKPFKDEFKPNLSH 80 (159)
T ss_pred EEccccEEEEEeCCCChHHHHHHHHHH--hcCc-cCCcEEEEEeCCcEEEecccC-CCCCCCccccCCccCcccccCcCc
Confidence 369999999999999999999999999 6899 999999999999999999986 788889999999999995 46789
Q ss_pred CCceEEEEecCCCCCCCceEEEEcCCCCcccCCCC
Q 027269 191 VGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFFC 225 (225)
Q Consensus 191 ~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~~ 225 (225)
+++|+|+|+++++++++||||||+.++|||||+|.
T Consensus 81 ~~~G~v~ma~~~~~s~~sqFfIt~~~~~~Ld~~~~ 115 (159)
T cd01923 81 DGRGVLSMANSGPNTNGSQFFITYRSCKHLDGKHT 115 (159)
T ss_pred CCCcEEEEeeCCCCCcccEEEEECCCCcccCCCcc
Confidence 99999999999999999999999999999999873
No 17
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-34 Score=265.82 Aligned_cols=118 Identities=52% Similarity=0.761 Sum_probs=109.3
Q ss_pred ceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCC
Q 027269 102 TKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSF 181 (225)
Q Consensus 102 ~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~ 181 (225)
+++.=+-.|-.|+.|+|.|.||+++||+||+||...| ..|| |+|.+|||||+|||||+|||. |+|+||.+|||+.|
T Consensus 400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~--rngy-y~~~~fhriik~fmiqtgdp~-g~gtggesiwg~df 475 (558)
T KOG0882|consen 400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHS--RNGY-YDNHTFHRIIKGFMIQTGDPL-GDGTGGESIWGKDF 475 (558)
T ss_pred ceecccceEEEecccceEEEecccccchhhhhhhccc--cCcc-ccCcchHHhhhhheeecCCCC-CCCCCCcccccccc
Confidence 3333344555789999999999999999999999999 6999 999999999999999999998 99999999999999
Q ss_pred CCCc-cCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 182 EDES-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 182 ~dE~-~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
+||. ..|+|+++-+|||||.|||+||||||||+.++|||||+
T Consensus 476 edefh~~lrhdrpft~smanag~ntngsqffit~~~tpwld~k 518 (558)
T KOG0882|consen 476 EDEFHPNLRHDRPFTVSMANAGPNTNGSQFFITTVPTPWLDGK 518 (558)
T ss_pred hhhcCcccccCCCceEEecccCCCCCCceEEEEecCccccCCc
Confidence 9996 47999999999999999999999999999999999995
No 18
>KOG0865 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-33 Score=235.51 Aligned_cols=124 Identities=70% Similarity=1.217 Sum_probs=119.4
Q ss_pred ccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEE---eecCceeecCccccCCCCCCccc
Q 027269 100 VTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHR---IIKDFMIQGGDFTEGDGTGGISI 176 (225)
Q Consensus 100 ~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhR---Vip~f~IQgGd~~~~~g~gg~si 176 (225)
++++||||++++++++|++++|||.+..|+|++||..||+|++|++|++..||| .+++||+||||.+.++|+||.+|
T Consensus 2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~yk~s~fhr~~~~~~~fm~qggDft~hngtggkSi 81 (167)
T KOG0865|consen 2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFGYKGSCFHRLIPIIPGFMCQGGDFTCHNGTGGKSI 81 (167)
T ss_pred CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccccccchhhhccccccceeeccCcccccCCccceEe
Confidence 478999999999999999999999999999999999999999999999999999 34479999999999999999999
Q ss_pred cCCCCCCCccCccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 177 YGSSFEDESFVLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 177 ~g~~~~dE~~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
|++.|+||++.++|..+|+|+|||.|||+||||||||+..+.||||+
T Consensus 82 y~ekF~DenFilkhtgpGiLSmaNagpntngsqffictaktewLdgk 128 (167)
T KOG0865|consen 82 YGEKFDDENFILKHTGPGILSMANAGPNTNGSQFFICTAKTEWLDGK 128 (167)
T ss_pred cccccCCcCcEEecCCCCeeehhhcCCCccccEEEEEccccccccCc
Confidence 99999999999999999999999999999999999999999999984
No 19
>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM). This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.
Probab=99.98 E-value=3.6e-32 Score=226.71 Aligned_cols=110 Identities=43% Similarity=0.648 Sum_probs=98.0
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccC-------CCCCCC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYG-------SSFEDE 184 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g-------~~~~dE 184 (225)
.|+.|+|+||||.+.||+||+||++|| +.+| |+|+.||||+|+|+|||||+. ++|.++.++|+ ..+++|
T Consensus 3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~--~~~~-Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~~~~~~~~~~e 78 (166)
T cd01921 3 ETTLGDLVIDLFTDECPLACLNFLKLC--KLKY-YNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLYGRQARFFEPE 78 (166)
T ss_pred EeccCCEEEEEcCCCCCHHHHHHHHHH--hcCC-cCCCEEEEEeCCceEEECCcC-CCCCCCcccccccccccCcccCcc
Confidence 468999999999999999999999999 6789 999999999999999999987 67777777664 346677
Q ss_pred c-cCccCCCceEEEEecCCCCCCCceEEEEcCC-CCcccCCCC
Q 027269 185 S-FVLKHVGPGVLSMANAGPNTNGSQFFICTVK-VRWQLCFFC 225 (225)
Q Consensus 185 ~-~~l~H~~~G~LsMa~~gpns~gSQFfItl~~-~p~LDg~~~ 225 (225)
. ..++|+++|+|+||+.++++++||||||+.+ +|||||+|.
T Consensus 79 ~~~~~~h~~~G~l~ma~~~~~~~~SQFfIt~~~~~~~Ldg~~t 121 (166)
T cd01921 79 ILPLLKHSKKGTVSMVNAGDNLNGSQFYITLGENLDYLDGKHT 121 (166)
T ss_pred cCCccccCCceEEEEeECCCCCccceEEEEcCCCCcccCCCcc
Confidence 5 4778999999999999999999999999975 899999873
No 20
>KOG0884 consensus Similar to cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.3e-32 Score=215.13 Aligned_cols=109 Identities=53% Similarity=0.798 Sum_probs=103.4
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCcc-CccC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESF-VLKH 190 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~-~l~H 190 (225)
.|..|+|.||||.+.+|++|+||+.|| ...| |+++.|||-+|+||+|+||++ ..|.||.+|||..|+||.. .++|
T Consensus 6 ht~~gdikiev~~e~tpktce~~l~~~--~~~~-~n~~~~~~~~~~f~v~~~~~~-~tgrgg~siwg~~fede~~~~lkh 81 (161)
T KOG0884|consen 6 HTDVGDIKIEVFCERTPKTCENFLALC--ASDY-YNGCIFHRNIKGFMVQTGDPT-HTGRGGNSIWGKKFEDEYSEYLKH 81 (161)
T ss_pred eeccCcEEEEEEecCChhHHHHHHHHh--hhhh-ccceeecCCCCCcEEEeCCCC-CCCCCCccccCCcchHHHHHHHhh
Confidence 467899999999999999999999999 6778 999999999999999999998 8999999999999999975 6899
Q ss_pred CCceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 191 VGPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 191 ~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
+-||.|||||.|||+|+||||||++..||||=+|
T Consensus 82 ~~rg~vsmanngp~tn~sqffity~kq~hldmky 115 (161)
T KOG0884|consen 82 NVRGVVSMANNGPNTNGSQFFITYGKQPHLDMKY 115 (161)
T ss_pred ccceeEEcccCCCCCCCceEEEEecCCCccceeE
Confidence 9999999999999999999999999999999765
No 21
>KOG0885 consensus Peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.6e-31 Score=243.46 Aligned_cols=123 Identities=41% Similarity=0.671 Sum_probs=113.8
Q ss_pred hhhhhcccccceEEEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCC
Q 027269 92 KDVELQAKVTTKVFFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGT 171 (225)
Q Consensus 92 ~~~~~~~~~~~~vf~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~ 171 (225)
....++|..+.+|.+. |+.|+|.|||++..||++|.||+.|| -.|| |+|+.|||++|||++|||||+ ++|+
T Consensus 3 ~~~~~EP~ttgkvil~-----TT~G~I~iELW~kE~P~acrnFiqKO--Gegy-y~nt~fhrlvp~f~~Qggdp~-~~gt 73 (439)
T KOG0885|consen 3 TSYNLEPPTTGKVILK-----TTKGDIDIELWAKECPKACRNFIQLC--LEGY-YDNTEFHRLVPGFLVQGGDPT-GTGT 73 (439)
T ss_pred cccccCCCccceEEEE-----eccCceeeeehhhhhhHHHHHHHHHH--Hhcc-ccCceeeeeccchhcccCCCC-CCCC
Confidence 3456778888888766 68899999999999999999999999 6899 999999999999999999998 8999
Q ss_pred CCccccCCCCCCCcc-CccCCCceEEEEecCCCCCCCceEEEEcCCCCcccCC
Q 027269 172 GGISIYGSSFEDESF-VLKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQLCF 223 (225)
Q Consensus 172 gg~si~g~~~~dE~~-~l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~ 223 (225)
||.+|||.+|.+|.. .++++++|+|+|||.+.+.||||||+||+++||||++
T Consensus 74 Ggesiyg~~fadE~h~Rlrf~rrGlvgmana~~~~ngsqFfftl~~~~el~nk 126 (439)
T KOG0885|consen 74 GGESIYGRPFADEFHPRLRFNRRGLVGMANAGNDDNGSQFFFTLGDTPELNNK 126 (439)
T ss_pred CccccccccchhhcCcceeeeccceeeecccCCCCCCceEEEEecCChHhccc
Confidence 999999999999964 6789999999999999999999999999999999974
No 22
>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E. coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.
Probab=99.97 E-value=1.4e-30 Score=215.13 Aligned_cols=104 Identities=34% Similarity=0.472 Sum_probs=91.6
Q ss_pred eeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCCC
Q 027269 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (225)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~~ 192 (225)
|+.|+|+||||.+.||+||+||++|| +.|| |+|+.||||+|+|||||||+..+.+. ..++..+++|.....|++
T Consensus 4 T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQ~Gd~~~~~~~---~~~~~~~~~e~~~~~~~~ 77 (155)
T cd01920 4 TSLGDIVVELYDDKAPITVENFLAYV--RKGF-YDNTIFHRVISGFVIQGGGFTPDLAQ---KETLKPIKNEAGNGLSNT 77 (155)
T ss_pred ecceeEEEEEeCCCCcHHHHHHHHHH--hcCC-CCCCEEEEEeCCcEEEeCCCCCCCCc---cccCCcccCcccccccCC
Confidence 68999999999999999999999999 6899 99999999999999999998744322 234667888876666778
Q ss_pred ceEEEEecCC-CCCCCceEEEEcCCCCcccC
Q 027269 193 PGVLSMANAG-PNTNGSQFFICTVKVRWQLC 222 (225)
Q Consensus 193 ~G~LsMa~~g-pns~gSQFfItl~~~p~LDg 222 (225)
+|+||||+.+ ||+++|||||++.++|+||+
T Consensus 78 ~G~v~ma~~~~~~s~~SqFfI~~~~~~~ld~ 108 (155)
T cd01920 78 RGTIAMARTNAPDSATSQFFINLKDNASLDY 108 (155)
T ss_pred ceEEEECCCCCCCCccceEEEECCCchhcCC
Confidence 9999999975 99999999999999999995
No 23
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=99.97 E-value=2.5e-30 Score=220.60 Aligned_cols=104 Identities=30% Similarity=0.451 Sum_probs=90.9
Q ss_pred eeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCCC
Q 027269 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (225)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~~ 192 (225)
|+.|+|+||||.+.||+||+||++|| ++|| |+|+.||||+|+|||||||+....+ ...++..+++|.....|++
T Consensus 35 T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRvi~~f~iQgG~~~~~~~---~~~~~~~~~~e~~~~l~~~ 108 (190)
T PRK10903 35 TSAGNIELELNSQKAPVSVKNFVDYV--NSGF-YNNTTFHRVIPGFMIQGGGFTEQMQ---QKKPNPPIKNEADNGLRNT 108 (190)
T ss_pred eccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEeCCceEEeCCcCCCCC---CCCCCCcccCcccccCcCC
Confidence 58999999999999999999999999 6899 9999999999999999999764322 1234667888866556778
Q ss_pred ceEEEEecCC-CCCCCceEEEEcCCCCcccC
Q 027269 193 PGVLSMANAG-PNTNGSQFFICTVKVRWQLC 222 (225)
Q Consensus 193 ~G~LsMa~~g-pns~gSQFfItl~~~p~LDg 222 (225)
+|+|+|||.+ ||+++|||||++.++||||+
T Consensus 109 ~G~lama~~~~~~sn~SQFfIt~~~~~~ld~ 139 (190)
T PRK10903 109 RGTIAMARTADKDSATSQFFINVADNAFLDH 139 (190)
T ss_pred CcEEEeCCCCCCCCcccEEEEECcCcccccC
Confidence 9999999965 99999999999999999994
No 24
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=99.97 E-value=1.6e-30 Score=219.42 Aligned_cols=109 Identities=34% Similarity=0.511 Sum_probs=93.9
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCC--------------------
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGT-------------------- 171 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~-------------------- 171 (225)
.|+.|+|+||||.+.||+||+||++|| +.|| |+++.||||+|+|||||||+... +.
T Consensus 3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~--~~g~-Ydg~~FhRVi~~fviQgGdp~~~-~~~~~~~~~~~~~~~p~e~~~~ 78 (176)
T cd01924 3 ATDNGTITIVLDGYNAPVTAGNFVDLV--ERGF-YDGMEFHRVEGGFVVQTGDPQGK-NPGFPDPETGKSRTIPLEIKPE 78 (176)
T ss_pred ccccceEEEEEcCCCCCHHHHHHHHHH--HhCC-cCCCEEEEecCCcEEEecCCCCC-CCCcccccccccccccceeccc
Confidence 478999999999999999999999999 6899 99999999999999999998743 21
Q ss_pred -CCccccCCCCC-----CCccCccCCCceEEEEecCC--CCCCCceEEEEcC-------CCCcccCCC
Q 027269 172 -GGISIYGSSFE-----DESFVLKHVGPGVLSMANAG--PNTNGSQFFICTV-------KVRWQLCFF 224 (225)
Q Consensus 172 -gg~si~g~~~~-----dE~~~l~H~~~G~LsMa~~g--pns~gSQFfItl~-------~~p~LDg~~ 224 (225)
.+.++|+..+. +++..+.|+++|+|+|||.+ ||+++|||||+++ +.|||||+|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~~~~~~~~~~~~~~Ldg~y 146 (176)
T cd01924 79 GQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRY 146 (176)
T ss_pred CCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEEeccccccCCCCCccCCCc
Confidence 23346665543 45667788899999999987 7999999999999 799999987
No 25
>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional
Probab=99.97 E-value=2.6e-30 Score=215.74 Aligned_cols=104 Identities=34% Similarity=0.566 Sum_probs=89.3
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHV 191 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~ 191 (225)
.|+.|+|+||||.+.||+|++||++|| +.|| |+|+.||||+|+|||||||+..+.+.. .++..+++|.....|+
T Consensus 5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~--~~g~-Yd~~~fhRvi~~f~iQgGd~~~~~~~~---~~~~~~~~e~~~~~~~ 78 (164)
T PRK10791 5 HTNHGDIVIKTFDDKAPETVKNFLDYC--REGF-YNNTIFHRVINGFMIQGGGFEPGMKQK---ATKEPIKNEANNGLKN 78 (164)
T ss_pred EEccccEEEEEeCCCCcHHHHHHHHHH--hcCC-cCCcEEEEEecCcEEEeCCcCCCCCcC---CCCCCcCCcccccccC
Confidence 479999999999999999999999999 6899 999999999999999999976444322 2456788885444445
Q ss_pred CceEEEEecCC-CCCCCceEEEEcCCCCccc
Q 027269 192 GPGVLSMANAG-PNTNGSQFFICTVKVRWQL 221 (225)
Q Consensus 192 ~~G~LsMa~~g-pns~gSQFfItl~~~p~LD 221 (225)
++|+||||+.+ ||+++|||||++.++|+||
T Consensus 79 ~~G~lsma~~~~p~s~~SQFfI~~~~~~~ld 109 (164)
T PRK10791 79 TRGTLAMARTQAPHSATAQFFINVVDNDFLN 109 (164)
T ss_pred CCcEEEECCCCCcCCccceEEEEecCchhhc
Confidence 79999999985 9999999999999999987
No 26
>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP
Probab=99.96 E-value=2.3e-28 Score=197.52 Aligned_cols=107 Identities=55% Similarity=0.822 Sum_probs=95.3
Q ss_pred eeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCcc-CC
Q 027269 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK-HV 191 (225)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~-H~ 191 (225)
|+.|+|+||||.+.+|++|+||++|| +.++ |+|+.||||+|+++||+||+....+.+ ..++..+++|..... |+
T Consensus 4 T~~G~i~IeL~~~~~P~~~~nF~~l~--~~~~-Y~~~~f~rv~~~~~iq~Gd~~~~~~~~--~~~~~~~~~E~~~~~~~~ 78 (146)
T cd00317 4 TTKGRIVIELYGDEAPKTVENFLSLA--RGGF-YDGTTFHRVIPGFMIQGGDPTGTGGGG--SGPGYKFPDENFPLKYHH 78 (146)
T ss_pred eccCcEEEEEcCCCChHHHHHHHHHH--hcCC-cCCCEEEEEeCCCeEEECCCCCCCCCC--CcCCCccCCccccCcCcC
Confidence 57799999999999999999999999 5778 999999999999999999987544322 356778999987655 88
Q ss_pred CceEEEEecCCCCCCCceEEEEcCCCCcccCCC
Q 027269 192 GPGVLSMANAGPNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 192 ~~G~LsMa~~gpns~gSQFfItl~~~p~LDg~~ 224 (225)
++|+|+|++.++++++|||||+|.++|+||++|
T Consensus 79 ~~G~v~~~~~~~~~~~sqF~Itl~~~~~ld~~~ 111 (146)
T cd00317 79 RRGTLSMANAGPNTNGSQFFITTAPTPHLDGKH 111 (146)
T ss_pred CCcEEEEeeCCCCCcccEEEEECCCCcccCCCc
Confidence 999999999999999999999999999999976
No 27
>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms. It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....
Probab=99.95 E-value=1.1e-27 Score=195.17 Aligned_cols=114 Identities=51% Similarity=0.827 Sum_probs=96.2
Q ss_pred EEEEEECCeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCC-ccccCCCCCC
Q 027269 105 FFDVDIGGKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGG-ISIYGSSFED 183 (225)
Q Consensus 105 f~di~v~~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg-~si~g~~~~d 183 (225)
||+|.+++ .|+|+||||.+.||++|+||++||+ .++ |+|+.||||+|+++||+|++......+. ....+..+++
T Consensus 1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~--~~~-y~g~~f~ri~~~~~i~~G~~~~~~~~~~~~~~~~~~~~~ 75 (155)
T PF00160_consen 1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCT--SGF-YDGTKFHRIIPNFVIQGGDPTGNGGYGREDSTGGEPIPD 75 (155)
T ss_dssp EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHH--TTS-STTEBEEEEETTTEEEESSTTTSSSSTSEEBTTBSCBSS
T ss_pred CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhc--ccc-cCCceeecccccceeeeeeccCCCCcccccccCcccccc
Confidence 78888855 9999999999999999999999994 778 9999999999999999999875433111 1233446888
Q ss_pred Ccc--CccCCCceEEEEecCC--CCCCCceEEEEcCCCCcccCCC
Q 027269 184 ESF--VLKHVGPGVLSMANAG--PNTNGSQFFICTVKVRWQLCFF 224 (225)
Q Consensus 184 E~~--~l~H~~~G~LsMa~~g--pns~gSQFfItl~~~p~LDg~~ 224 (225)
|.. .+.| ++|+|+|++.+ +++++|||||+|.++||||+.|
T Consensus 76 E~~~~~~~~-~~G~v~~~~~~~~~~~~~sqF~I~l~~~~~ld~~~ 119 (155)
T PF00160_consen 76 EFNPSLLKH-RRGLVSMARSGKDPNSNGSQFFITLSDAPHLDGKY 119 (155)
T ss_dssp SGBTTSSSS-STTEEEEEBSSSSTTEBSSEEEEESSCGGGGTTTS
T ss_pred ccccccccc-cceeeeecccccCCCCCCceEEeeccCCCccccce
Confidence 873 4556 89999999986 8999999999999999999976
No 28
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=6.7e-25 Score=200.67 Aligned_cols=110 Identities=44% Similarity=0.639 Sum_probs=100.3
Q ss_pred CeeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCC-------CCCC
Q 027269 112 GKPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSS-------FEDE 184 (225)
Q Consensus 112 ~t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~-------~~dE 184 (225)
.|++|+|||+||-+.+|.+|.||++|| +..| |+.+.||.|.++|.+|.|||+ |+|.||.+||+.. |+.|
T Consensus 6 eTtlGDlvIDLf~~erP~~clNFLKLC--k~KY-YN~clfh~vq~~f~aQTGDPt-GtG~GG~si~~~lyG~q~rffeaE 81 (479)
T KOG0415|consen 6 ETTLGDLVIDLFVKERPRTCLNFLKLC--KIKY-YNFCLFHTVQRDFTAQTGDPT-GTGDGGESIYGVLYGEQARFFEAE 81 (479)
T ss_pred EeecccEEeeeecccCcHHHHHHHHHH--hHhh-cccceeeeccccceeecCCCC-CCCCCcceeeeecccccchhhhhh
Confidence 478999999999999999999999999 6889 999999999999999999998 7999999998743 5566
Q ss_pred c-cCccCCCceEEEEecCCCCCCCceEEEEcCCC-CcccCCCC
Q 027269 185 S-FVLKHVGPGVLSMANAGPNTNGSQFFICTVKV-RWQLCFFC 225 (225)
Q Consensus 185 ~-~~l~H~~~G~LsMa~~gpns~gSQFfItl~~~-p~LDg~~~ 225 (225)
. ..++|.+.|+|||++.|.|.+||||||||+++ .+|||++|
T Consensus 82 ~~p~l~Hsk~G~vsmvs~g~n~~gSQF~iTlgenLdyLDg~ht 124 (479)
T KOG0415|consen 82 FLPKLKHSKMGTVSMVSAGENLNGSQFFITLGENLDYLDGKHT 124 (479)
T ss_pred hcccccccccceEEeecCCcccccceEEEEccccccccccccc
Confidence 4 47899999999999999999999999999975 59999875
No 29
>PRK00969 hypothetical protein; Provisional
Probab=91.44 E-value=0.74 Score=45.17 Aligned_cols=76 Identities=21% Similarity=0.252 Sum_probs=47.7
Q ss_pred eeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCCCceE
Q 027269 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPGV 195 (225)
Q Consensus 116 G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~~~G~ 195 (225)
--|.||||.+.||+|+.-|+++. |=+-.--=-..+|=..++.++.=|+.. ++..+.+||..-.-..+|.
T Consensus 378 ~vi~IeLydd~AP~s~~yFR~~t-GL~~~~VG~L~v~F~~~d~~lFk~~~~----------~~k~liPEN~P~~~V~ag~ 446 (508)
T PRK00969 378 KLIEIELYDDKAPRTVWYFRKVT-GLKTKPVGKLPVYFKYEDTYLFKGNIE----------YAKGLLPENTPEDKVKAGE 446 (508)
T ss_pred HEEEEEEcCcCCchHHHHHHHhc-CCcccccceeEEEEEeCCeEEEccChh----------hccccCCCCCCCCccccce
Confidence 46899999999999999999976 211000112455556666555433322 3445666665555567888
Q ss_pred EEEecCC
Q 027269 196 LSMANAG 202 (225)
Q Consensus 196 LsMa~~g 202 (225)
|++-|..
T Consensus 447 IgvTN~a 453 (508)
T PRK00969 447 IGVTNMA 453 (508)
T ss_pred Eeeechh
Confidence 8887643
No 30
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=90.70 E-value=0.99 Score=44.21 Aligned_cols=77 Identities=21% Similarity=0.281 Sum_probs=47.0
Q ss_pred ceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCCCce
Q 027269 115 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVGPG 194 (225)
Q Consensus 115 ~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~~~G 194 (225)
-.-|.||||.+.||.|+.-|+++. |=+-..---..+|=..++.++.=|+. .++..+.+||..-.-..+|
T Consensus 374 ~~vi~IeLydd~AP~s~~yFRk~t-GL~~~~VG~L~v~F~~~d~~mFk~~~----------~~~k~LiPEN~P~~~V~ag 442 (503)
T TIGR03268 374 DKVIEIELYDDNAPRSVWYFRKFT-GLKTKPVGRLPVHFAFKEMIMFKGNK----------ELAKGLIPENTPEDKVEAG 442 (503)
T ss_pred HhEEEEEEcccCCchHHHHHHHhc-CCcccccceeEEEEEeCCeeEeccCc----------hhccccCCCCCCCCccccc
Confidence 346899999999999999999876 21100011245555666644442322 2344466666544455688
Q ss_pred EEEEecCC
Q 027269 195 VLSMANAG 202 (225)
Q Consensus 195 ~LsMa~~g 202 (225)
.|+|-|..
T Consensus 443 ~IgvTN~a 450 (503)
T TIGR03268 443 VIGVTNQA 450 (503)
T ss_pred eEeeechh
Confidence 88887643
No 31
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=81.52 E-value=3.2 Score=39.99 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEcCCCChhhHHHHHHHh
Q 027269 117 RIVMGLFGDVVPKTAENFRALC 138 (225)
Q Consensus 117 ~IvIeL~~~~aP~tv~NFl~L~ 138 (225)
-|+||||.+.||.++.-|.++.
T Consensus 377 iieIELyed~APrSv~yFRr~t 398 (512)
T COG4070 377 IIEIELYEDRAPRSVWYFRRST 398 (512)
T ss_pred EEEEEecCCCCchhhHHHHhhc
Confidence 5899999999999999999876
No 32
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=76.51 E-value=1.9 Score=42.05 Aligned_cols=102 Identities=21% Similarity=0.278 Sum_probs=71.7
Q ss_pred ceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCcc--ccCC---CCCC--CccC
Q 027269 115 AGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGIS--IYGS---SFED--ESFV 187 (225)
Q Consensus 115 ~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~s--i~g~---~~~d--E~~~ 187 (225)
.--|.|+++.+-.|.-++-|.++| +.+| +++..|.||.+.+++|.||.......+|.- +.++ .+++ +++.
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~--q~~~-fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~ 187 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFC--QDGY-FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFE 187 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcC--ccce-ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCcccccccc
Confidence 339999999999999999999999 7999 999999999999999999976544444432 1122 1333 3567
Q ss_pred ccCCCceEEEEecCCCCCCCceEEEEcCCCCcc
Q 027269 188 LKHVGPGVLSMANAGPNTNGSQFFICTVKVRWQ 220 (225)
Q Consensus 188 l~H~~~G~LsMa~~gpns~gSQFfItl~~~p~L 220 (225)
++|. .-++.........-+-+|++.-...+-|
T Consensus 188 ~K~e-TdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 188 LKHE-TDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccc-chhhcccccccCccceEEccccCccccc
Confidence 7885 5555555444334455676665554433
No 33
>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]
Probab=59.02 E-value=21 Score=34.59 Aligned_cols=64 Identities=28% Similarity=0.418 Sum_probs=40.9
Q ss_pred eeEEEEEcCCCChhhHHHHHHHhhCCCCc---ccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCCC
Q 027269 116 GRIVMGLFGDVVPKTAENFRALCTGEKGY---GYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (225)
Q Consensus 116 G~IvIeL~~~~aP~tv~NFl~L~~G~kG~---~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~~ 192 (225)
=.+.+||..+ +|+.++.|++|. +.|. .|+-..|-- | .+..+..++.|++.++.
T Consensus 203 Ty~eve~s~n-sP~saEH~lalm--edG~lri~~~tntfis----------~---------~~lq~~~~~~en~d~Re-- 258 (512)
T COG4070 203 TYFEVELSRN-SPKSAEHFLALM--EDGTLRIDVTTNTFIS----------D---------DTLQEEKVPEENFDLRE-- 258 (512)
T ss_pred EEEEEEeCCC-CchhHHHHHHHh--hcceEEEEEeccceee----------c---------cccccccCChhhhhhhh--
Confidence 4567788776 999999999999 6664 122211111 1 12234557778777664
Q ss_pred ceEEEEecCCC
Q 027269 193 PGVLSMANAGP 203 (225)
Q Consensus 193 ~G~LsMa~~gp 203 (225)
+|.|..-|.|-
T Consensus 259 rG~iTvRn~Gv 269 (512)
T COG4070 259 RGAITVRNVGV 269 (512)
T ss_pred cceEEEEeeec
Confidence 88888888664
No 34
>PF12903 DUF3830: Protein of unknown function (DUF3830); InterPro: IPR024532 This is a family of bacterial and archaeal proteins. The structure of one of family members, A0JVT3 from SWISSPROT, has been characterised and shown to contain a cyclophilin-like fold.; PDB: 3KOP_B.
Probab=55.74 E-value=14 Score=30.87 Aligned_cols=44 Identities=27% Similarity=0.256 Sum_probs=28.3
Q ss_pred eeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCc--eeecCcc
Q 027269 116 GRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDF--MIQGGDF 165 (225)
Q Consensus 116 G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f--~IQgGd~ 165 (225)
-.++.+|..+.||+||+-|.++- - |.+..+|-..-|. ++.-+++
T Consensus 8 ~~~~A~l~~d~AP~Tcaa~~~~L---P---~~~~~~HarwSG~ei~~~l~~~ 53 (147)
T PF12903_consen 8 VSFTARLLDDKAPKTCAAFWEAL---P---LKGKVIHARWSGEEIWIPLPDF 53 (147)
T ss_dssp EEEEEEE-TTTSHHHHHHHHHH--------EEEE-EE-SSSSSEEEEEEE--
T ss_pred eEEEEEEcccCChHHHHHHHHhC---C---CCCcEEEEEEECcEEEEECCCc
Confidence 46889999999999999999876 2 6666677665553 4444553
No 35
>PRK00969 hypothetical protein; Provisional
Probab=48.37 E-value=47 Score=32.90 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=45.9
Q ss_pred eeceeEEEEEcCCCChhhHHHHHHHhhCCCCc---ccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCcc
Q 027269 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGY---GYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLK 189 (225)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~---~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~ 189 (225)
.-.=.+.+||..+ +|..++.|+.+. +.|. .|.-..|-+ | ....|...+.|++.-+
T Consensus 201 ~IfTy~eve~~~~-~p~s~EH~la~~--~~G~f~Vd~~tstfI~----------d---------~~L~g~~~p~En~~~R 258 (508)
T PRK00969 201 KIFTYVEVELDPG-APKSVEHFLALL--EDGTFEVDFETSTFIA----------D---------DRLQGLKIPEENFEPR 258 (508)
T ss_pred EEEEEEEEEEcCC-CCchHHHHHHHH--hCCeEEEeeeecceEe----------e---------ccccCccCCccccCcc
Confidence 3344577788776 999999999999 5665 111111111 1 1223555667766543
Q ss_pred CCCceEEEEecCCCCCCCceEEEEcC
Q 027269 190 HVGPGVLSMANAGPNTNGSQFFICTV 215 (225)
Q Consensus 190 H~~~G~LsMa~~gpns~gSQFfItl~ 215 (225)
++|+|.+-+.|.+.. .-||--.
T Consensus 259 --~~GtVTVRt~G~g~G--~vYIyre 280 (508)
T PRK00969 259 --RRGTVTVRTAGVGVG--KVYIYRE 280 (508)
T ss_pred --ccceEEEEeeccCce--eEEEECC
Confidence 588998888765432 4455443
No 36
>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3. A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.
Probab=47.44 E-value=55 Score=32.42 Aligned_cols=80 Identities=21% Similarity=0.330 Sum_probs=45.5
Q ss_pred eeceeEEEEEcCCCChhhHHHHHHHhhCCCCcccCCCeEEEeecCceeecCccccCCCCCCccccCCCCCCCccCccCCC
Q 027269 113 KPAGRIVMGLFGDVVPKTAENFRALCTGEKGYGYKGCSFHRIIKDFMIQGGDFTEGDGTGGISIYGSSFEDESFVLKHVG 192 (225)
Q Consensus 113 t~~G~IvIeL~~~~aP~tv~NFl~L~~G~kG~~Y~gt~FhRVip~f~IQgGd~~~~~g~gg~si~g~~~~dE~~~l~H~~ 192 (225)
.-.=.+.+||..+ +|..++.|+.+. +.|. + .+.+.---|+ +| ....|...+.|++.-+ +
T Consensus 198 ~IfTy~evE~~~~-~p~s~EH~la~~--~~G~-~---~Vd~~tsTfi---~d---------~~L~g~~~p~En~~~R--~ 256 (503)
T TIGR03268 198 RIFTYVEVELDPN-APVSVEHFLALM--EDGT-F---RVDYRTSTFI---SD---------DSLRGLDKPEENIEKR--R 256 (503)
T ss_pred EEEEEEEEEEcCC-CChhHHHHHHHH--hCCe-E---EEeeeecceE---ec---------ccccCccCCccccCcc--c
Confidence 3344577787766 999999999999 5665 1 1111111111 01 1223555677766543 5
Q ss_pred ceEEEEecCCCCCCCceEEEEcC
Q 027269 193 PGVLSMANAGPNTNGSQFFICTV 215 (225)
Q Consensus 193 ~G~LsMa~~gpns~gSQFfItl~ 215 (225)
+|+|.+-+.|.+. -..||--.
T Consensus 257 rGtVTVRn~G~G~--G~VYIYre 277 (503)
T TIGR03268 257 RGAVTVRNSGVGE--GRVYIYRE 277 (503)
T ss_pred ceeEEEEeeccCc--eeEEEEcC
Confidence 8999988876543 24455443
No 37
>PF06138 Chordopox_E11: Chordopoxvirus E11 protein; InterPro: IPR009201 This group represents a virion core protein, vaccinia E11L type.
Probab=33.80 E-value=2.6e+02 Score=22.91 Aligned_cols=48 Identities=15% Similarity=0.359 Sum_probs=33.2
Q ss_pred eEEEEEEECCeeceeEEEEEcCCC--Ch-------hhHHHHHHHhhCCCCcccCCCeEEEeecC
Q 027269 103 KVFFDVDIGGKPAGRIVMGLFGDV--VP-------KTAENFRALCTGEKGYGYKGCSFHRIIKD 157 (225)
Q Consensus 103 ~vf~di~v~~t~~G~IvIeL~~~~--aP-------~tv~NFl~L~~G~kG~~Y~gt~FhRVip~ 157 (225)
+||++ +..|++.+..-.+. +| ++++.|++.- ++-..-+-+.|+-++++
T Consensus 5 NIfLE-----sd~grvkl~~~~~~~~c~~~~~~~~~Av~~Fl~~L--~kyI~veeStFylvvrd 61 (130)
T PF06138_consen 5 NIFLE-----SDSGRVKLRYEEPDCKCARTGCEARRAVKHFLSVL--KKYIDVEESTFYLVVRD 61 (130)
T ss_pred EEEEe-----ccCceeEEEEeCCCcccccccchHHHHHHHHHHHH--HhhEEecccEEEEEEec
Confidence 45665 46788877776444 22 3688999988 45333578999999998
Done!