Query 027270
Match_columns 225
No_of_seqs 127 out of 1148
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 07:26:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03145 Protein phosphatase 2 100.0 8.8E-41 1.9E-45 294.4 22.8 188 16-224 138-331 (365)
2 PF00481 PP2C: Protein phospha 100.0 9.6E-40 2.1E-44 275.9 13.5 181 16-215 70-254 (254)
3 KOG0698 Serine/threonine prote 100.0 2.3E-38 4.9E-43 276.9 22.1 188 17-224 114-305 (330)
4 PTZ00224 protein phosphatase 2 100.0 1.3E-37 2.9E-42 275.2 22.9 177 21-224 86-272 (381)
5 KOG0697 Protein phosphatase 1B 100.0 2.5E-38 5.4E-43 261.3 16.7 168 40-224 117-292 (379)
6 KOG0699 Serine/threonine prote 100.0 3.5E-36 7.7E-41 256.3 15.3 168 43-225 325-505 (542)
7 KOG0700 Protein phosphatase 2C 100.0 3E-34 6.5E-39 248.6 16.0 184 14-208 166-377 (390)
8 COG0631 PTC1 Serine/threonine 100.0 1.9E-33 4.2E-38 238.5 15.4 174 17-224 80-253 (262)
9 smart00332 PP2Cc Serine/threon 100.0 1E-29 2.2E-34 213.3 22.4 182 16-220 73-255 (255)
10 cd00143 PP2Cc Serine/threonine 100.0 1.7E-29 3.6E-34 211.3 22.2 184 16-222 70-254 (254)
11 PRK14559 putative protein seri 100.0 1.7E-28 3.7E-33 228.6 19.9 176 20-224 457-636 (645)
12 KOG1323 Serine/threonine phosp 99.9 7.9E-25 1.7E-29 185.4 15.7 186 16-223 219-487 (493)
13 KOG0618 Serine/threonine phosp 99.8 8.9E-21 1.9E-25 178.3 12.0 164 40-224 601-773 (1081)
14 KOG1379 Serine/threonine prote 99.7 1.2E-16 2.6E-21 135.3 15.5 153 31-221 147-329 (330)
15 smart00331 PP2C_SIG Sigma fact 99.4 1.1E-11 2.3E-16 100.1 14.5 108 45-206 82-192 (193)
16 PF13672 PP2C_2: Protein phosp 99.2 3.1E-11 6.8E-16 98.8 8.7 102 43-188 92-195 (212)
17 TIGR02865 spore_II_E stage II 99.2 4.5E-10 9.7E-15 108.2 14.4 122 46-222 633-763 (764)
18 PF07228 SpoIIE: Stage II spor 99.1 7.1E-09 1.5E-13 83.3 17.0 124 47-223 59-193 (193)
19 COG2208 RsbU Serine phosphatas 97.5 0.0052 1.1E-07 54.7 14.8 121 48-223 231-366 (367)
20 COG3700 AphA Acid phosphatase 58.1 22 0.00048 28.7 4.6 45 162-206 72-127 (237)
21 PF09436 DUF2016: Domain of un 56.5 7.5 0.00016 26.3 1.5 21 158-178 24-44 (72)
22 PF05785 CNF1: Rho-activating 47.2 23 0.00049 30.4 3.3 25 45-70 129-153 (281)
23 PF05402 PqqD: Coenzyme PQQ sy 41.0 74 0.0016 20.4 4.5 40 163-204 3-42 (68)
24 PF12095 DUF3571: Protein of u 37.3 1.3E+02 0.0028 21.0 5.3 48 159-206 8-65 (83)
25 TIGR03859 PQQ_PqqD coenzyme PQ 34.4 99 0.0021 21.1 4.4 41 161-204 16-56 (81)
26 PF01436 NHL: NHL repeat; Int 31.7 86 0.0019 16.6 3.4 21 55-75 8-28 (28)
27 cd00534 DHNA_DHNTPE Dihydroneo 25.8 2.6E+02 0.0056 20.2 5.9 53 167-219 43-97 (118)
28 PF06972 DUF1296: Protein of u 25.3 1.4E+02 0.003 19.4 3.5 26 175-203 19-44 (60)
29 TIGR02276 beta_rpt_yvtn 40-res 24.2 1.1E+02 0.0024 17.1 2.9 20 59-78 3-22 (42)
30 PF14014 DUF4230: Protein of u 22.3 3.5E+02 0.0075 20.4 6.6 40 148-187 76-115 (157)
31 TIGR00525 folB dihydroneopteri 22.0 3.1E+02 0.0067 19.7 6.5 56 167-222 42-99 (116)
No 1
>PLN03145 Protein phosphatase 2c; Provisional
Probab=100.00 E-value=8.8e-41 Score=294.37 Aligned_cols=188 Identities=36% Similarity=0.650 Sum_probs=163.9
Q ss_pred hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270 16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
.+.+.+.++|. .++.++.+.. .......+|||++++++.++++|||||||||+|+++.+ ++
T Consensus 138 ~~~~al~~af~--~~d~~~~~~~--~~~~~~~~GTTavv~li~~~~l~vaNvGDSRayl~r~g---------------~~ 198 (365)
T PLN03145 138 EIEKVVSSAFL--QTDTAFAEAC--SLDASLASGTTALAALVVGRSLVVANAGDCRAVLCRRG---------------KA 198 (365)
T ss_pred hHHHHHHHHHH--HHhHHHHhhh--ccccCCCCcCcEEEEEEECCeEEEEecCCceEEEEcCC---------------eE
Confidence 34455666663 6677766543 12234469999999999999999999999999999998 99
Q ss_pred EecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCC------CeeeeCeEEEEEecCCCeEEEEecC
Q 027270 96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF------GVVATPDIHSFEVTERDHFIILGCD 169 (225)
Q Consensus 96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~------~v~~~p~i~~~~l~~~~~~lil~SD 169 (225)
++||.||++.++.|++||.+.||.+. .++++|.+++||+|||+.+|.. .++++|++..+++.++|.|||||||
T Consensus 199 ~~LT~DH~~~~~~E~~RI~~~Gg~v~-~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~ePdv~~~~l~~~D~fLILaSD 277 (365)
T PLN03145 199 IEMSRDHKPMCSKERKRIEASGGYVY-DGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEPELMTTQLTEEDEFLIIGCD 277 (365)
T ss_pred EEecCCCCCCCHHHHHHHHHcCCcee-cceECCccccccccccccccccccccCCCcceEEEEEEEECCCCCEEEEEeCC
Confidence 99999999999999999999999987 6789999999999999877643 4789999999999999999999999
Q ss_pred ccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 170 GLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 170 Gl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
||||+++++++++++...+....+++.+|+.|++.|+ .+++.||+|||||+|+.
T Consensus 278 GLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al-~rgs~DNITvIVV~l~~ 331 (365)
T PLN03145 278 GIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEAL-KRKSGDNLAVVVVCFQS 331 (365)
T ss_pred ccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hCCCCCCEEEEEEEeec
Confidence 9999999999999998887766789999999999998 68999999999999974
No 2
>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....
Probab=100.00 E-value=9.6e-40 Score=275.92 Aligned_cols=181 Identities=40% Similarity=0.631 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270 16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
.+.+.+.++|.. ..++.+.... ... ....+|||++++++.++++|+|||||||+|+++.+ ..
T Consensus 70 ~~~~al~~a~~~-~~~~~~~~~~-~~~-~~~~~GsTa~v~li~~~~l~vanvGDSravl~~~~---------------~~ 131 (254)
T PF00481_consen 70 DIEEALRQAFLA-FTDESLYSDS-ENN-ESSKSGSTATVALIDGNKLYVANVGDSRAVLCRNG---------------GI 131 (254)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHH-HHH-THTTSEEEEEEEEEETTEEEEEEESS-EEEEEETT---------------EE
T ss_pred chhhcccceeee-cccccccccc-ccc-ccccccccccccccccceeEEEeeeeeeeeeeecc---------------cc
Confidence 455666666641 1555555532 112 56789999999999999999999999999999999 77
Q ss_pred E-ecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCC---CCeeeeCeEEEEEecCCCeEEEEecCcc
Q 027270 96 I-VVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKK---FGVVATPDIHSFEVTERDHFIILGCDGL 171 (225)
Q Consensus 96 ~-~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~---~~v~~~p~i~~~~l~~~~~~lil~SDGl 171 (225)
. +||.||+|.++.|+.||.+.||.+...+|+.|.+++||+|||..+|+ ++|+++|+|..+++.++++|||||||||
T Consensus 132 ~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~~P~i~~~~l~~~d~flvlaSDGl 211 (254)
T PF00481_consen 132 IKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIAEPDISEVDLTPDDEFLVLASDGL 211 (254)
T ss_dssp EEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB---EEEEEEEBTTEEEEEEE-HHH
T ss_pred ccccccccccchhhccceeeccccccccchhhhhccccccccccccccccccceeeeecccccccccccceEEEEEcccc
Confidence 7 99999999999999999999999988889999999999999999998 7899999999999999988999999999
Q ss_pred ccccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCc
Q 027270 172 WGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNC 215 (225)
Q Consensus 172 ~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNi 215 (225)
||+|+++|+++++++.......|+.+|+.|++.|+ .+|+.|||
T Consensus 212 wd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~-~~gs~DNi 254 (254)
T PF00481_consen 212 WDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAI-ARGSKDNI 254 (254)
T ss_dssp HTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH-HTTHHSHE
T ss_pred cccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-hcCCCCCC
Confidence 99999999999999987655569999999999997 79999996
No 3
>KOG0698 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-38 Score=276.87 Aligned_cols=188 Identities=35% Similarity=0.543 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECC-EEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270 17 MNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGR-TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~-~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
....++++|.. .++.+++.. ..+...+|||++++++.++ ++||||+|||||+|++.+ + ..
T Consensus 114 ~~~a~~~~F~~-~~D~~~~~~----~~~~~~~gstav~~vi~~~~~l~vaN~GDSRaVl~~~~----------~----~a 174 (330)
T KOG0698|consen 114 VKDALRRAFLT-KTDSEFLEK----REDNRSGGSTAVVALIKKGRKLYVANVGDSRAVLSRKG----------G----VA 174 (330)
T ss_pred HHHHHHHHHHH-HHHHHHHhh----ccCCCCCcceeeeeeEecCCEEEEEEcCCCcEEEecCC----------C----ee
Confidence 55566666621 467777765 1224678899888888755 999999999999999864 0 69
Q ss_pred EecCCCCCCCChhHHHHHHHcCCeEeeC---CccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccc
Q 027270 96 IVVTRVHKAIYPQERARIQKSGGTVSSN---GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLW 172 (225)
Q Consensus 96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~---~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~ 172 (225)
++||.||.|..+.|+.||+++||++... .|+.|.|+++|+|||..+|.++|+++|++....+.+.++||||||||||
T Consensus 175 ~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~a~Pei~~~~~~~~deFLiLasDGiw 254 (330)
T KOG0698|consen 175 VQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVIAEPEIQQVKINSDDEFLILASDGIW 254 (330)
T ss_pred eeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEecCCceEEEEcCCCCcEEEEeCCchh
Confidence 9999999999999999999999999864 4999999999999999999888999999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 173 GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 173 d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
|+++++|++++|+..+.....+..++..+.+.|+ .+++.||+|||||.|.+
T Consensus 255 Dv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~-~~~s~DnitvvvV~l~~ 305 (330)
T KOG0698|consen 255 DVVSNQEAVDLVRDELASISSPLAAAKLLATEAL-SRGSKDNITVVVVRLKS 305 (330)
T ss_pred cccChHHHHHHHHHHhhccccHHHHHHHHHHHHh-hcCCCCCeEEEEEEecC
Confidence 9999999999999987555688999999999997 79999999999999975
No 4
>PTZ00224 protein phosphatase 2C; Provisional
Probab=100.00 E-value=1.3e-37 Score=275.18 Aligned_cols=177 Identities=35% Similarity=0.611 Sum_probs=153.0
Q ss_pred HHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEE-CCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecC
Q 027270 21 FKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWIL-GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVT 99 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~-~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt 99 (225)
+++++. .+|+++++.. ..+|||++++++. +++++||||||||+|+++.+ ++++||
T Consensus 86 l~~a~~--~~d~~i~~~~-------~~~GsTatv~lI~~~~~l~vaNVGDSRayl~r~g---------------~~~~LT 141 (381)
T PTZ00224 86 MEELCL--EIDEEWMDSG-------REGGSTGTFCVIMKDVHLQVGNVGDSRVLVCRDG---------------KLVFAT 141 (381)
T ss_pred HHHHHH--HHHHHHHhcc-------cCCCCeEEEEEEEECCEEEEEEcccceEEEEECC---------------EEEEcc
Confidence 444552 5566665443 2469999998876 57999999999999999998 999999
Q ss_pred CCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCC--------CeeeeCeEEEEEecCCCeEEEEecCcc
Q 027270 100 RVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGL 171 (225)
Q Consensus 100 ~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~--------~v~~~p~i~~~~l~~~~~~lil~SDGl 171 (225)
.||++.++.|+.||.+.|+.+. .+|+.|.+.+||+|||..+|.. .|+++||+..+++.++| +||||||||
T Consensus 142 ~DH~~~~~~E~~RI~~~gg~v~-~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi~~~~l~~~D-~llLaSDGL 219 (381)
T PTZ00224 142 EDHKPNNPGERQRIEACGGRVV-SNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDVTHLTCQSND-FIILACDGV 219 (381)
T ss_pred cCCCCCCHHHHhHHHHccCEec-cccccCceeeecccCCcccccccccccccCcceeeeEEEEEECCCCC-EEEEECCCc
Confidence 9999999999999999999997 5799999999999999876543 36789999999998876 999999999
Q ss_pred cc-ccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 172 WG-VFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 172 ~d-~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
|| +++++|+.+++...+....+++.+|+.|++.|+ .+|+.||+|||||++..
T Consensus 220 ~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~-~rGs~DNITvIvV~~~~ 272 (381)
T PTZ00224 220 FEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAI-RRGSKDNISCLIVQLKD 272 (381)
T ss_pred CcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-hcCCCCCEEEEEEEeeC
Confidence 99 899999999998776555689999999999997 69999999999999864
No 5
>KOG0697 consensus Protein phosphatase 1B (formerly 2C) [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-38 Score=261.28 Aligned_cols=168 Identities=33% Similarity=0.635 Sum_probs=158.3
Q ss_pred hccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecCCCCCCCChhHHHHHHHcCCe
Q 027270 40 TLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGT 119 (225)
Q Consensus 40 ~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~dH~~~~~~e~~ri~~~g~~ 119 (225)
+...+..++||||+.+++...++|++|+||||++++|++ ..+.-|.||.|.++.|+.||+.+||.
T Consensus 117 ~~~~~~drsGsTAVcv~vsp~h~y~~NcGDSRavl~rng---------------~~~f~TqDHKP~~p~EkeRIqnAGGS 181 (379)
T KOG0697|consen 117 DISKGSDRSGSTAVCVFVSPTHIYIINCGDSRAVLCRNG---------------EVVFSTQDHKPYLPKEKERIQNAGGS 181 (379)
T ss_pred hhhcccccCCceEEEEEecCceEEEEecCcchhheecCC---------------ceEEeccCCCCCChHHHHHHhcCCCe
Confidence 556666789999999999999999999999999999999 99999999999999999999999999
Q ss_pred EeeCCccCCeeeccccccCcCCCCC--------CeeeeCeEEEEEecCCCeEEEEecCccccccChHHHHHHHHHHHhCC
Q 027270 120 VSSNGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG 191 (225)
Q Consensus 120 ~~~~~r~~g~l~~tRslGd~~~k~~--------~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~v~~~~~~~ 191 (225)
+. ..|++|.|+++|+|||+.+|.. .|+++|+|..+.....|+|+|||+||+||+++++|++++|+..+...
T Consensus 182 VM-IqRvNGsLAVSRAlGDydyK~v~~kgp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt 260 (379)
T KOG0697|consen 182 VM-IQRVNGSLAVSRALGDYDYKNVPGKGPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVT 260 (379)
T ss_pred EE-EEEecceeeeehhccCcccccCCCCCchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheec
Confidence 98 6799999999999999999974 48899999999999999999999999999999999999999999888
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 192 LSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 192 ~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
.+...+|..+++.++ ..|++||+|+++|-|.+
T Consensus 261 ~dL~~vcn~VvDtCL-hKGSRDNMsivlvcfp~ 292 (379)
T KOG0697|consen 261 SDLEEVCNDVVDTCL-HKGSRDNMSIVLVCFPG 292 (379)
T ss_pred ccHHHHHHHHHHHHH-hccCccCceEEEEecCC
Confidence 899999999999998 69999999999998753
No 6
>KOG0699 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.5e-36 Score=256.31 Aligned_cols=168 Identities=35% Similarity=0.609 Sum_probs=156.7
Q ss_pred CCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecCCCCCCCChhHHHHHHHcCCeEee
Q 027270 43 LGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSS 122 (225)
Q Consensus 43 ~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~dH~~~~~~e~~ri~~~g~~~~~ 122 (225)
.....+|||+++|++.+++|||||.||||+++.|.+ +.+-+|.||.|..+.|..||..+||.++-
T Consensus 325 ePG~DSGtTAvVcLv~g~~liVANAGDSRcV~sr~G---------------kAvdmS~DHKPEDevE~~RI~~AGG~vtl 389 (542)
T KOG0699|consen 325 EPGEDSGTTAVVCLVGGDKLIVANAGDSRCVLSRNG---------------KAVDMSVDHKPEDEVETNRIHAAGGQVTL 389 (542)
T ss_pred CCCCCCCceEEEEEecCceEEEecCCCcceEEecCC---------------ceeecccCCCcccHHHHHHHHhcCCeEee
Confidence 445668999999999999999999999999999999 99999999999999999999999999999
Q ss_pred CCccCCeeeccccccCcCCCCC--------CeeeeCeEEEEEecCCCeEEEEecCccccccChHHHHHHHHHHHhCCCCH
Q 027270 123 NGRLQGRLEVSRAFGDRQFKKF--------GVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSV 194 (225)
Q Consensus 123 ~~r~~g~l~~tRslGd~~~k~~--------~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~v~~~~~~~~~~ 194 (225)
++|++|.|+++|+|||+.+|+. .+++.|||+...|.+.++|+|+|+||||++++.++++++|+..+..+...
T Consensus 390 DGRVNGGLNLSRA~GDHaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~l 469 (542)
T KOG0699|consen 390 DGRVNGGLNLSRAFGDHAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSL 469 (542)
T ss_pred cceecCccchhhhhhhhhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchH
Confidence 9999999999999999999873 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh-----CCCCCCcEEEEEEecCC
Q 027270 195 TAVSRRLVREAVLE-----RRCKDNCTAIVIIFRHK 225 (225)
Q Consensus 195 ~~~a~~l~~~A~~~-----~~~~DNiTvivv~~~~~ 225 (225)
..+|+.|++.++.. ..+.||+|||++.|.++
T Consensus 470 s~iceeL~D~CLAp~T~GDGTGCDNMT~ii~~Fkrk 505 (542)
T KOG0699|consen 470 SEICEELCDACLAPSTDGDGTGCDNMTVIITTFKRK 505 (542)
T ss_pred HHHHHHHHHhhcCCCCCCCCcCCCcceEEEEEeccc
Confidence 99999999998731 24789999999999753
No 7
>KOG0700 consensus Protein phosphatase 2C/pyruvate dehydrogenase (lipoamide) phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3e-34 Score=248.57 Aligned_cols=184 Identities=29% Similarity=0.388 Sum_probs=153.6
Q ss_pred cchHHHHHHHHHHHHhhcHHHHHhhhhccCCC---cCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCccc
Q 027270 14 GKRMNLFFKKVFQILENNESLLVAGFTLLLGG---WQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDEL 90 (225)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~ 90 (225)
...+.+.+.++|+ ++++.+++..-...... -.+|+|+++++++++.+||||+|||||+|.+.. .++
T Consensus 166 ~~~v~~al~~Af~--~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~~LyVaN~GDSRAVLG~~~---------~~~ 234 (390)
T KOG0700|consen 166 HGDVLEALSKAFE--ATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGGDLYVANVGDSRAVLGVVE---------NNG 234 (390)
T ss_pred chhHHHHHHHHHH--HHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCCeEEEEecCcchhhhceec---------CCC
Confidence 4667788888885 78888887752222211 248999999999999999999999999998876 223
Q ss_pred CceeEEecCCCCCCCChhHHHHHHHcCC---eEeeC--CccCCeeeccccccCcCCCCC--------------------C
Q 027270 91 SSLKAIVVTRVHKAIYPQERARIQKSGG---TVSSN--GRLQGRLEVSRAFGDRQFKKF--------------------G 145 (225)
Q Consensus 91 ~~~~~~~lt~dH~~~~~~e~~ri~~~g~---~~~~~--~r~~g~l~~tRslGd~~~k~~--------------------~ 145 (225)
..|..+|||.||+..++.|++||...++ .+..+ +|+.|.+.+||||||..+|++ +
T Consensus 235 ~~~~A~qLS~dHn~~ne~Ev~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~Py 314 (390)
T KOG0700|consen 235 SWLVAVQLSTDHNASNEDEVRRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPY 314 (390)
T ss_pred CeEEEEecChhhccccHHHHHHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCc
Confidence 3368999999999999999999999887 22223 599999999999999998863 7
Q ss_pred eeeeCeEEEEEecCCCeEEEEecCccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Q 027270 146 VVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLE 208 (225)
Q Consensus 146 v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~ 208 (225)
++++|+|..++|.+.|.||||||||||++|+++|++++|..++.....-+.+|+.|+++|+.+
T Consensus 315 ltaeP~i~~HrL~p~DkFLIlASDGLwE~lsNeeaV~lV~~~i~~~~pd~~~A~hLIr~aL~~ 377 (390)
T KOG0700|consen 315 LTAEPSITHHKLTPNDKFLILASDGLWEYLSNEEAVSLVHEFISGKFPDGNPATHLIRHALGR 377 (390)
T ss_pred eeccceEEEEEcCCCCeEEEEeccchhhhcChHHHHHHHHHhhccCCCCCCHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999998764334467899999999853
No 8
>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=1.9e-33 Score=238.53 Aligned_cols=174 Identities=26% Similarity=0.410 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEE
Q 027270 17 MNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAI 96 (225)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~ 96 (225)
..+.+.+.+. ..++.+.... ........+|||++++++.++++|+|||||||+|+++++ .++
T Consensus 80 ~~~~l~~~~~--~~n~~i~~~~-~~~~~~~~mgtTl~~~~~~~~~l~~a~vGDSR~yl~~~~---------------~~~ 141 (262)
T COG0631 80 LEELLKEAIL--KANEAIAEEG-QLNEDVRGMGTTLVLLLIRGNKLYVANVGDSRAYLLRDG---------------ELK 141 (262)
T ss_pred HHHHHHHHHH--HHHHHHHHhh-hcccccCCCceeEEEEEEECCeEEEEEccCCeEEEEcCC---------------ceE
Confidence 4566777663 6777777776 244566889999999999999999999999999999999 999
Q ss_pred ecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccC
Q 027270 97 VVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFG 176 (225)
Q Consensus 97 ~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~ 176 (225)
|||.||++.+..++.++...++.... .|. ..+||+||+... ..|++...++.++ +|||||||||||.++
T Consensus 142 ~lT~DH~~~~~~~~~~~~~~~~~~~~-~~~---~~ltralG~~~~------~~p~~~~~~~~~~-d~llL~SDGl~d~v~ 210 (262)
T COG0631 142 QLTEDHSLVNRLEQRGIITPEEARSH-PRR---NALTRALGDFDL------LEPDITELELEPG-DFLLLCSDGLWDVVS 210 (262)
T ss_pred EeccCCcHHHHHHHhcCCCHHHHHhC-ccc---hhhhhhcCCCcc------cceeEEEEEcCCC-CEEEEECCCCccCcC
Confidence 99999999999998886655444332 222 379999998654 5899999999998 599999999999999
Q ss_pred hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 177 PSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 177 ~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
++++.++++. ..+++.++++|++.|. .+++.||+|+++|.+..
T Consensus 211 ~~~i~~il~~----~~~~~~~~~~li~~a~-~~g~~DNiT~ilv~~~~ 253 (262)
T COG0631 211 DDEIVDILKN----SETPQEAADKLIELAL-EGGGPDNITVVLVRLNG 253 (262)
T ss_pred HHHHHHHHhc----CCCHHHHHHHHHHHHH-hcCCCCceEEEEEEeec
Confidence 9999999876 3589999999999997 69999999999999764
No 9
>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain. The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=1e-29 Score=213.31 Aligned_cols=182 Identities=39% Similarity=0.589 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270 16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
...+.++++++ ..++.+.... ........+|||++++++..++++++|+||||+|+++.+ ++
T Consensus 73 ~~~~~l~~~~~--~~~~~~~~~~-~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~y~~~~~---------------~~ 134 (255)
T smart00332 73 DVEEALRKAFL--KTDEEILEEL-ESLEEDAGSGSTAVVALISGNKLYVANVGDSRAVLCRNG---------------KA 134 (255)
T ss_pred HHHHHHHHHHH--HHHHHHHHhh-hhccCCCCCCccEEEEEEECCEEEEEeccCceEEEEeCC---------------ce
Confidence 35555666664 5666666664 222234678999999999999999999999999999998 89
Q ss_pred EecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEe-cCCCeEEEEecCccccc
Q 027270 96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGV 174 (225)
Q Consensus 96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l-~~~~~~lil~SDGl~d~ 174 (225)
.++|.||++.++.|..||.+.++.+. .++.++...+||++|+...+ +.+.++|++...++ .++| +|||||||||++
T Consensus 135 ~~lt~dh~~~~~~~~~~i~~~~~~~~-~~~~~~~~~lt~~~g~~~~~-~~i~~~p~~~~~~~~~~~d-~ill~SDGv~~~ 211 (255)
T smart00332 135 VQLTEDHKPSNEDERARIEAAGGFVI-NGRVNGVLALSRAIGDFFLK-PYVSAEPDVTVVELTEKDD-FLILASDGLWDV 211 (255)
T ss_pred eEcCCCCCCcCHHHHHHHHHcCCEEE-CCeECCeEecccccCCHhhc-CCeEeeeEEEEEEecCCCc-EEEEECCccccC
Confidence 99999999999999999999999886 45777889999999998776 45889999999997 5555 999999999999
Q ss_pred cChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEE
Q 027270 175 FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVI 220 (225)
Q Consensus 175 l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv 220 (225)
++++++.+++.+.... .++..+|+.|++.|. .++..||+|+||+
T Consensus 212 l~~~~i~~~~~~~~~~-~~~~~~~~~l~~~a~-~~~~~Dn~T~ivv 255 (255)
T smart00332 212 LSNQEVVDIVRKHLSK-SDPEEAAKRLIDLAL-ARGSKDNITVIVV 255 (255)
T ss_pred CCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHH-HcCCCCCeEEEEC
Confidence 9999999999876432 258999999999997 6899999999985
No 10
>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.
Probab=99.97 E-value=1.7e-29 Score=211.29 Aligned_cols=184 Identities=37% Similarity=0.616 Sum_probs=153.2
Q ss_pred hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270 16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
.+...+..+++ ..++.+.... ........+|||++++++.++.++++|+||||+|+++++ ++
T Consensus 70 ~~~~~l~~~~~--~~~~~l~~~~-~~~~~~~~~gtT~~~~~~~~~~l~~~~vGDsr~~~~~~~---------------~~ 131 (254)
T cd00143 70 DIEEALRKAFL--RADEEILEEA-QDEPDDARSGTTAVVALIRGNKLYVANVGDSRAVLCRNG---------------EA 131 (254)
T ss_pred HHHHHHHHHHH--HHHHHHHHhh-hhccCCCCCCCcEEEEEEECCEEEEEEecCcEEEEEcCC---------------ce
Confidence 44455666664 5666666654 222355678999999999999999999999999999999 99
Q ss_pred EecCCCCCCCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEe-cCCCeEEEEecCccccc
Q 027270 96 IVVTRVHKAIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEV-TERDHFIILGCDGLWGV 174 (225)
Q Consensus 96 ~~lt~dH~~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l-~~~~~~lil~SDGl~d~ 174 (225)
+++|.||++.++.++.|+.+.++.+. ..+.++...+||++|+..++ +++.++|++..+++ .+++ +|+|||||||++
T Consensus 132 ~~lt~dh~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~t~~lG~~~~~-~~~~~~~~~~~~~l~~~~d-~ill~SDG~~~~ 208 (254)
T cd00143 132 VQLTKDHKPVNEEERERIEKAGGRVS-NGRVPGVLAVTRALGDFDLK-PGVSAEPDVTVVKLTEDDD-FLILASDGLWDV 208 (254)
T ss_pred eEcCCCCCCcChHHHHHHHHcCCcEE-eCEEcCceeeccccCCcccc-CCEEcCCeEEEEEeCCCCc-EEEEECCCCeec
Confidence 99999999999899999999998765 45556678999999998777 44788999999999 5555 899999999999
Q ss_pred cChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 027270 175 FGPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIF 222 (225)
Q Consensus 175 l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~ 222 (225)
++++++.+++...... .+++++|+.|++.|. .+++.||+|+|++++
T Consensus 209 l~~~~i~~~~~~~~~~-~~~~~~a~~l~~~a~-~~~~~Dn~t~i~~~~ 254 (254)
T cd00143 209 LSNQEAVDIVRSELAK-EDLQEAAQELVDLAL-RRGSHDNITVVVVRL 254 (254)
T ss_pred cChHHHHHHHHHHhcc-cCHHHHHHHHHHHHH-hCCCCCCEEEEEEeC
Confidence 9999999998876311 368999999999997 688999999999975
No 11
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=99.96 E-value=1.7e-28 Score=228.63 Aligned_cols=176 Identities=20% Similarity=0.226 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhcHHHHHhhhhc-cCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEE-ecCCCCCCCCCcccCceeEEe
Q 027270 20 FFKKVFQILENNESLLVAGFTL-LLGGWQDGATAVCIWILGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIV 97 (225)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~-~~~~~~~~~~~~~~~~~~~~~ 97 (225)
.+++++. .+|..+.+..-.. ..+..+||||++++++.++++|++||||||+|+++ ++ +++|
T Consensus 457 ~L~~ai~--~AN~~I~~~~~~~~~~~~~~MGTTlv~alI~~~~l~ianVGDSRaYli~r~g---------------~l~Q 519 (645)
T PRK14559 457 TIREAIY--LANEAIYDLNQQNARSGSGRMGTTLVMALVQDTQVAVAHVGDSRLYRVTRKG---------------GLEQ 519 (645)
T ss_pred HHHHHHH--HHHHHHHHHhhhcccccCCCCCceeeeEEEECCEEEEEEecCceEEEEecCC---------------eEEE
Confidence 3444443 5567776543111 11445799999999999999999999999999985 56 8999
Q ss_pred cCCCCCCCChhHHHHHHHcCCeEee-CCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccc-c
Q 027270 98 VTRVHKAIYPQERARIQKSGGTVSS-NGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGV-F 175 (225)
Q Consensus 98 lt~dH~~~~~~e~~ri~~~g~~~~~-~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~-l 175 (225)
||.||++.+.. .+.|..... ..+ ++...+||++|+...+. .+|++..+.+.+++ +||||||||||. +
T Consensus 520 LT~DHs~~~~l-----v~~Gi~~~~a~~~-p~~~~LTrALG~~~~~~----l~Pdi~~~~L~~gD-~lLLCSDGL~D~~~ 588 (645)
T PRK14559 520 LTVDHEVGQRE-----IQRGVEPQIAYAR-PDAYQLTQALGPRDNSA----IQPDIQFLEIEEDT-LLLLCSDGLSDNDL 588 (645)
T ss_pred eCCCCCHHHHH-----HHhCCCHHHHhcC-cccceeeeccCCCCCCc----ccceEEEEEcCCCC-EEEEECCCCCCCcc
Confidence 99999986433 233311000 112 34568999999865443 38999999998865 899999999994 3
Q ss_pred ChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 176 GPSDAVEFVQKLLKEGLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 176 ~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
.+....+.+...+....++.++|+.|++.|+ .+|++||+|+|||+++.
T Consensus 589 ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al-~~gg~DNITvIvV~l~~ 636 (645)
T PRK14559 589 LETHWQTHLLPLLSSSANLDQGLNKLIDLAN-QYNGHDNITAILVRLKV 636 (645)
T ss_pred cchHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HcCCCCcEEEEEEEecc
Confidence 3333333444445555689999999999997 68999999999999864
No 12
>KOG1323 consensus Serine/threonine phosphatase [Signal transduction mechanisms]
Probab=99.93 E-value=7.9e-25 Score=185.39 Aligned_cols=186 Identities=24% Similarity=0.378 Sum_probs=146.0
Q ss_pred hHHHHHHHHHHHHhhcHHHHHhhhhccCCCcCCCceeEEEEEECCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeE
Q 027270 16 RMNLFFKKVFQILENNESLLVAGFTLLLGGWQDGATAVCIWILGRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKA 95 (225)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~ 95 (225)
-+...++.+|+ ..++++-+.. ..-....|||+.++++.-+++|+||.|||||+++|++ .+
T Consensus 219 LViGAlEsAFq--emDeqiarer---~~~~~~GGCtalvvi~llGKlYvaNAGDsRAIlVrnd---------------ei 278 (493)
T KOG1323|consen 219 LVIGALESAFQ--EMDEQIARER---QVWRLPGGCTALVVIVLLGKLYVANAGDSRAILVRND---------------EI 278 (493)
T ss_pred hhHHHHHHHHH--HHHHHHHHHH---HhhcCCCCceEEEeeeeccceEEccCCCceEEEEecC---------------Ce
Confidence 34556777885 6777776665 5556778999999999999999999999999999999 99
Q ss_pred EecCCCCCCCChhHHHHHHHcCC--------eEe---e------------------------------------------
Q 027270 96 IVVTRVHKAIYPQERARIQKSGG--------TVS---S------------------------------------------ 122 (225)
Q Consensus 96 ~~lt~dH~~~~~~e~~ri~~~g~--------~~~---~------------------------------------------ 122 (225)
++||.+.+|. .|++|++..+- ..+ .
T Consensus 279 rplS~efTPe--tERqRlQ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~geg 356 (493)
T KOG1323|consen 279 RPLSKEFTPE--TERQRLQELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEG 356 (493)
T ss_pred eecccccCcH--HHHHHHHHHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccc
Confidence 9999998775 68999887641 110 0
Q ss_pred -CCccCCeeeccccccCcCCCC--------CCeeeeCeEEEEEecC----CCeEEEEecCccccccChHHHHHHHHHHHh
Q 027270 123 -NGRLQGRLEVSRAFGDRQFKK--------FGVVATPDIHSFEVTE----RDHFIILGCDGLWGVFGPSDAVEFVQKLLK 189 (225)
Q Consensus 123 -~~r~~g~l~~tRslGd~~~k~--------~~v~~~p~i~~~~l~~----~~~~lil~SDGl~d~l~~~ei~~~v~~~~~ 189 (225)
..|+-+.+.+||.+||..++- |.+++.|+|....+.+ .|+.+||||||+||+++++|+..+|++.+.
T Consensus 357 rkaRll~TigVsRGlGDH~Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~ 436 (493)
T KOG1323|consen 357 RKARLLATIGVSRGLGDHHLKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLP 436 (493)
T ss_pred hhhhhhhhheeccccCcceeeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcC
Confidence 113334689999999998773 4678999999999885 455999999999999999999999999986
Q ss_pred CC--CCH---HHHHHHHHHHHHH------------hCCCCCCcEEEEEEec
Q 027270 190 EG--LSV---TAVSRRLVREAVL------------ERRCKDNCTAIVIIFR 223 (225)
Q Consensus 190 ~~--~~~---~~~a~~l~~~A~~------------~~~~~DNiTvivv~~~ 223 (225)
.. .+| ..+|+.++..|-- .-++.|||||.||.+.
T Consensus 437 ~~dp~Dp~RYt~aaqdlva~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~ 487 (493)
T KOG1323|consen 437 STDPADPSRYTQAAQDLVAAARGQQKDRGWRMNNGGLGSGDDISVFVIPLK 487 (493)
T ss_pred CCCCCChhHHHHHHHHHHHHhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence 43 244 3667777777621 1267899999999874
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.84 E-value=8.9e-21 Score=178.31 Aligned_cols=164 Identities=28% Similarity=0.435 Sum_probs=146.5
Q ss_pred hccCCCcCCCceeEEEEEECC--------EEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecCCCC-CCCChhHH
Q 027270 40 TLLLGGWQDGATAVCIWILGR--------TVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVH-KAIYPQER 110 (225)
Q Consensus 40 ~~~~~~~~~GtT~~~~~i~~~--------~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~dH-~~~~~~e~ 110 (225)
+....+...|..++.+.+..+ ++++||+|+|.+++++++ +..++|.-. ....++|.
T Consensus 601 klg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng---------------~~~p~t~~~~~~v~~eE~ 665 (1081)
T KOG0618|consen 601 KLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNG---------------KPLPTTRSPMLEVDREEY 665 (1081)
T ss_pred hhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcC---------------CcCcccccccccCCHHHH
Confidence 334555667888888888654 789999999999999999 888888764 45589999
Q ss_pred HHHHHcCCeEeeCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccChHHHHHHHHHHHhC
Q 027270 111 ARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKE 190 (225)
Q Consensus 111 ~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~v~~~~~~ 190 (225)
+||.+.+|++.+++++.|+...||++|.+...+ +|.+.|+|....+.+.|+|||+|+.++|++|+-+++++.+++.
T Consensus 666 ~RI~~~~g~i~ed~k~ngvt~~tR~iG~~~l~P-~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~--- 741 (1081)
T KOG0618|consen 666 KRIVDSKGFITEDNKLNGVTSSTRAIGPFSLFP-HVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNV--- 741 (1081)
T ss_pred HHHHHhcCeecCCCeeeceeeeeeecccccccc-cccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcC---
Confidence 999999999999999999999999999987775 6999999999999999999999999999999999999999854
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCcEEEEEEecC
Q 027270 191 GLSVTAVSRRLVREAVLERRCKDNCTAIVIIFRH 224 (225)
Q Consensus 191 ~~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~~~ 224 (225)
.+|-.+|++|++.|. .+|+.||++++||+++.
T Consensus 742 -~dpL~AAkKL~d~Aq-SYgc~~nv~vlVv~l~~ 773 (1081)
T KOG0618|consen 742 -EDPLLAAKKLCDLAQ-SYGCAENVSVLVVRLNH 773 (1081)
T ss_pred -CchHHHHHHHHHHHH-hcccccCeeEEEEEeec
Confidence 589999999999996 79999999999999864
No 14
>KOG1379 consensus Serine/threonine protein phosphatase [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-16 Score=135.28 Aligned_cols=153 Identities=22% Similarity=0.271 Sum_probs=109.7
Q ss_pred cHHHHHhhhhccCCC---cCCCceeEEEEEE--CCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecCCCCC--
Q 027270 31 NESLLVAGFTLLLGG---WQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHK-- 103 (225)
Q Consensus 31 ~~~~~~~~~~~~~~~---~~~GtT~~~~~i~--~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~dH~-- 103 (225)
...++.++|..-.+. .-.+|||+++.+. +++|++||+|||...++|++ ++++-|..+.
T Consensus 147 P~~lL~~ay~~l~~~~~~~vGSSTAcI~~l~~~~~~Lh~aNLGDSGF~VvR~G---------------~vv~~S~~Q~H~ 211 (330)
T KOG1379|consen 147 PVNLLEKAYAELKSQKVPIVGSSTACILALDRENGKLHTANLGDSGFLVVREG---------------KVVFRSPEQQHY 211 (330)
T ss_pred hHHHHHHHHHHHhhcCCCCCCcceeeeeeeecCCCeEEEeeccCcceEEEECC---------------EEEEcCchheec
Confidence 345556654333333 3378889888888 88999999999999999999 9998886533
Q ss_pred CCChhHHHHHHHcCCeEeeCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccChHHHHHH
Q 027270 104 AIYPQERARIQKSGGTVSSNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEF 183 (225)
Q Consensus 104 ~~~~~e~~ri~~~g~~~~~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~ 183 (225)
+.-+.+. + +.+ -.....++| .-...++..+.++++| .||+|||||||+|.+++|.++
T Consensus 212 FN~PyQL----------s----~~p-~~~~~~~~d-------~p~~ad~~~~~v~~GD-vIilATDGlfDNl~e~~Il~i 268 (330)
T KOG1379|consen 212 FNTPYQL----------S----SPP-EGYSSYISD-------VPDSADVTSFDVQKGD-VIILATDGLFDNLPEKEILSI 268 (330)
T ss_pred cCCceee----------c----cCC-ccccccccC-------CccccceEEEeccCCC-EEEEecccccccccHHHHHHH
Confidence 2222110 0 000 000111222 1124578899999988 899999999999999999999
Q ss_pred HHHHHh-CCCCHHHHHHHHHHHHHH----------------------hCCCCCCcEEEEEE
Q 027270 184 VQKLLK-EGLSVTAVSRRLVREAVL----------------------ERRCKDNCTAIVII 221 (225)
Q Consensus 184 v~~~~~-~~~~~~~~a~~l~~~A~~----------------------~~~~~DNiTvivv~ 221 (225)
+..... ....++..|+.++..|.. ..|..||||+||..
T Consensus 269 l~~~~~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~ 329 (330)
T KOG1379|consen 269 LKGLDARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSS 329 (330)
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEec
Confidence 998876 667899999999999863 12568999999975
No 15
>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases.
Probab=99.40 E-value=1.1e-11 Score=100.11 Aligned_cols=108 Identities=20% Similarity=0.243 Sum_probs=82.7
Q ss_pred CcCCCceeEEEEE--ECCEEEEEEccCCcEEEEE-ecCCCCCCCCCcccCceeEEecCCCCCCCChhHHHHHHHcCCeEe
Q 027270 45 GWQDGATAVCIWI--LGRTVFVANIGDAKAVVAR-SSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVS 121 (225)
Q Consensus 45 ~~~~GtT~~~~~i--~~~~l~vanvGDSr~~l~~-~~~~~~~~~~~~~~~~~~~~~lt~dH~~~~~~e~~ri~~~g~~~~ 121 (225)
...+|+|++++++ ..++++++|+||+|+|+++ ++ ...+.+.+
T Consensus 82 ~~~~~~T~~~~~id~~~~~l~~~~~Gd~~~~~~~~~~---------------~~~~~~~~-------------------- 126 (193)
T smart00331 82 EDGMFATLFLALYDFAGGTLSYANAGHSPPYLLRADG---------------GLVEDLDD-------------------- 126 (193)
T ss_pred CCCcEEEEEEEEEECCCCEEEEEeCCCCceEEEECCC---------------CeEEEcCC--------------------
Confidence 3457999999998 5789999999999999999 44 44444433
Q ss_pred eCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccChHHHHHHHHHHHhCCCCHHHHHHHH
Q 027270 122 SNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRL 201 (225)
Q Consensus 122 ~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l 201 (225)
.++.+|... ..+++...+++.++| .|+|+|||||+.++++++.+++.+.. ..+++++++++
T Consensus 127 ----------~~~~lG~~~------~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~l~~~l~~~~--~~~~~~~~~~i 187 (193)
T smart00331 127 ----------LGAPLGLEP------DVEVDVRELTLEPGD-LLLLYTDGLTEARNPERLEELLEELL--GSPPAEIAQRI 187 (193)
T ss_pred ----------CCceeeeCC------CCcceeEEEeeCCCC-EEEEECCCccccCChHHHHHHHHHhc--CCCHHHHHHHH
Confidence 134555321 124677888998988 79999999999999999988888764 34789999999
Q ss_pred HHHHH
Q 027270 202 VREAV 206 (225)
Q Consensus 202 ~~~A~ 206 (225)
.++++
T Consensus 188 ~~~~~ 192 (193)
T smart00331 188 LEELL 192 (193)
T ss_pred HHHHh
Confidence 88864
No 16
>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B ....
Probab=99.24 E-value=3.1e-11 Score=98.79 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=58.0
Q ss_pred CCCcCCCceeEEEEEECCEEEEEEccCCcEEEE-EecCCCCCCCCCcccCceeEEecCCCCCCCChhHHHHHHHcCCeEe
Q 027270 43 LGGWQDGATAVCIWILGRTVFVANIGDAKAVVA-RSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVS 121 (225)
Q Consensus 43 ~~~~~~GtT~~~~~i~~~~l~vanvGDSr~~l~-~~~~~~~~~~~~~~~~~~~~~~lt~dH~~~~~~e~~ri~~~g~~~~ 121 (225)
......+||++++++.++.++++|+||||+|+. +.+ ++..++.+|+. +..
T Consensus 92 ~~~~~~~tTl~~~v~~~~~~~~~~iGD~~i~~~~~~g---------------~~~~l~~~~~~----~~~---------- 142 (212)
T PF13672_consen 92 LELRDYGTTLLALVIDPDKVYIFNIGDSRIYVIRRNG---------------EIQQLTDDHSG----EYP---------- 142 (212)
T ss_dssp GGGTT-EE-EEEEEEETTEEEEEEESS-EEEEEEETT---------------EEEE-S---BH----HHH----------
T ss_pred ccccccCceEEEEEEECCEEEEEEECCCeEEEEECCC---------------EEEEcCCCccc----hhh----------
Confidence 344567999999999999999999999999765 555 88999999962 110
Q ss_pred eCCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccChHH-HHHHHHHHH
Q 027270 122 SNGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-AVEFVQKLL 188 (225)
Q Consensus 122 ~~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~e-i~~~v~~~~ 188 (225)
..++.+.... + ....++..+++.+++ .|+|||||||+.+...+ +..++.+..
T Consensus 143 ---------~~~~~~~~~~---~--~~~~~~~~~~~~~~d-~ilL~SDG~~~~l~~~~~~~~~l~~~~ 195 (212)
T PF13672_consen 143 ---------NQTRSLTGDD---P--EPDVQYGSIPLEEGD-VILLCSDGVWDNLRSYEDLEQFLKDLW 195 (212)
T ss_dssp ---------HCTTSCCHHC---C--CTETEEEEEE--TT--EEEEE-HHHHTTS-HHHHHHHH-----
T ss_pred ---------hhhhccCccc---c--ccCCeEEEEEcCCCC-EEEEECcCccccCCCHHHHHHHhhhcc
Confidence 0122332211 0 113366667777777 79999999999998665 556665553
No 17
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=99.18 E-value=4.5e-10 Score=108.22 Aligned_cols=122 Identities=16% Similarity=0.158 Sum_probs=90.5
Q ss_pred cCCCceeEEEEEE--CCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecCCCCCCCChhHHHHHHHcCCeEeeC
Q 027270 46 WQDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSN 123 (225)
Q Consensus 46 ~~~GtT~~~~~i~--~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~dH~~~~~~e~~ri~~~g~~~~~~ 123 (225)
..+++|+.+++++ .+++.++|+|+++.|+.+++ ++.+++..+.|
T Consensus 633 ~~~faTl~l~~IDl~~g~~~~~~aG~~p~~i~r~~---------------~v~~i~s~~lP------------------- 678 (764)
T TIGR02865 633 DEKFSTLDLSVIDLYTGQAEFVKVGAVPSFIKRGA---------------KVEVIRSSNLP------------------- 678 (764)
T ss_pred CCeEEEEEEEEEECCCCeEEEEecCCCceEEEECC---------------EEEEecCCCce-------------------
Confidence 3468999999885 67999999999999999888 78777643322
Q ss_pred CccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccChHH-----HHHHHHHHHhCCCCHHHHH
Q 027270 124 GRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-----AVEFVQKLLKEGLSVTAVS 198 (225)
Q Consensus 124 ~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~e-----i~~~v~~~~~~~~~~~~~a 198 (225)
+|- ... .+++....++.++| +|+++|||+||..++.+ +.+++.+. ...+|++++
T Consensus 679 ------------lGi--l~~----~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l~~~--~~~~p~ela 737 (764)
T TIGR02865 679 ------------IGI--LDE----VDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKLKET--NTNDPEEIA 737 (764)
T ss_pred ------------eEe--ccC----CccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHHHhc--CCCCHHHHH
Confidence 221 011 25667788898988 89999999999887543 44444332 235899999
Q ss_pred HHHHHHHHHhC--CCCCCcEEEEEEe
Q 027270 199 RRLVREAVLER--RCKDNCTAIVIIF 222 (225)
Q Consensus 199 ~~l~~~A~~~~--~~~DNiTvivv~~ 222 (225)
+.|+++|.+.. ...||+|++++++
T Consensus 738 ~~Il~~a~~~~~~~~~DD~Tvlvirv 763 (764)
T TIGR02865 738 EYLLEKAKELRSGKIKDDMTVIVAKV 763 (764)
T ss_pred HHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence 99999987433 2589999999986
No 18
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=99.12 E-value=7.1e-09 Score=83.33 Aligned_cols=124 Identities=19% Similarity=0.199 Sum_probs=81.8
Q ss_pred CCCceeEEEEEE--CCEEEEEEccCCcEEEEEecCCCCCCCCCcccCceeEEecCCCCCCCChhHHHHHHHcCCeEeeCC
Q 027270 47 QDGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLKAIVVTRVHKAIYPQERARIQKSGGTVSSNG 124 (225)
Q Consensus 47 ~~GtT~~~~~i~--~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~~~~lt~dH~~~~~~e~~ri~~~g~~~~~~~ 124 (225)
..++|++++++. .+.++++|+|++++++++++. + ....+.....+
T Consensus 59 ~~~~t~~~~~~d~~~~~l~~~~aG~~~~l~~~~~~---------~----~~~~~~~~~~~-------------------- 105 (193)
T PF07228_consen 59 NRYATACYAIIDPETGTLTYANAGHPPPLLLRPGG---------R----EIEQLESEGPP-------------------- 105 (193)
T ss_dssp STTEEEEEEEEETTTTEEEEEEESSSEEEEEETTC---------T----EEEEETCSSBB--------------------
T ss_pred cccceEEEEEecccceEEEEeCCCCCCEEEEeccc---------c----ceeecccCccc--------------------
Confidence 467888888875 568999999999999999950 0 33333322211
Q ss_pred ccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCccccccChHH-------HHHHHHHHHhCCCCHHHH
Q 027270 125 RLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWGVFGPSD-------AVEFVQKLLKEGLSVTAV 197 (225)
Q Consensus 125 r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~e-------i~~~v~~~~~~~~~~~~~ 197 (225)
+|-. .. ..+....+++.++| .|+|+||||+|....+. +.+++.+. ...+++++
T Consensus 106 -----------lG~~--~~----~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 165 (193)
T PF07228_consen 106 -----------LGIF--ED----IDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLELLDEN--RGLSPQEI 165 (193)
T ss_dssp -----------CSSS--CT----TCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHHHHHCH--TTS-HHHH
T ss_pred -----------eeee--cc----ccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHHHHhhc--cCCCHHHH
Confidence 3311 00 24455678888877 79999999999984442 23333332 34579999
Q ss_pred HHHHHHHHHH--hCCCCCCcEEEEEEec
Q 027270 198 SRRLVREAVL--ERRCKDNCTAIVIIFR 223 (225)
Q Consensus 198 a~~l~~~A~~--~~~~~DNiTvivv~~~ 223 (225)
++.+.+.+.. .....||+|+++++++
T Consensus 166 ~~~l~~~~~~~~~~~~~DD~tvl~~~~~ 193 (193)
T PF07228_consen 166 IDALLEAIDRFGKGPLRDDITVLVIRRQ 193 (193)
T ss_dssp HHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred HHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence 9999999864 2468999999999975
No 19
>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]
Probab=97.48 E-value=0.0052 Score=54.68 Aligned_cols=121 Identities=15% Similarity=0.151 Sum_probs=83.3
Q ss_pred CCceeEEEEEE--CCEEEEEEccCCcEEEEEecCCCCCCCCCcccCcee---EEecCCCCCCCChhHHHHHHHcCCeEee
Q 027270 48 DGATAVCIWIL--GRTVFVANIGDAKAVVARSSIVDGSNNHLDELSSLK---AIVVTRVHKAIYPQERARIQKSGGTVSS 122 (225)
Q Consensus 48 ~GtT~~~~~i~--~~~l~vanvGDSr~~l~~~~~~~~~~~~~~~~~~~~---~~~lt~dH~~~~~~e~~ri~~~g~~~~~ 122 (225)
+-+|+..++++ ...+..+|+|=--+++++.+ . ...++
T Consensus 231 ~f~T~~~~~~d~~~~~l~y~~aGH~p~~i~~~~---------------~~~~~~~l~----------------------- 272 (367)
T COG2208 231 MFVTLFLGVYDLDSGELTYSNAGHEPALILSAD---------------GEIEVEDLT----------------------- 272 (367)
T ss_pred cEEEEEEEEEeccCCEEEEeeCCCCCeeEEEcC---------------CCceeEEcc-----------------------
Confidence 56777777775 57899999999988888876 2 12211
Q ss_pred CCccCCeeeccccccCcCCCCCCeeeeCeEEEEEecCCCeEEEEecCcccc-------ccChHHHHHHHHHHHhCCCCHH
Q 027270 123 NGRLQGRLEVSRAFGDRQFKKFGVVATPDIHSFEVTERDHFIILGCDGLWG-------VFGPSDAVEFVQKLLKEGLSVT 195 (225)
Q Consensus 123 ~~r~~g~l~~tRslGd~~~k~~~v~~~p~i~~~~l~~~~~~lil~SDGl~d-------~l~~~ei~~~v~~~~~~~~~~~ 195 (225)
.....+|.. . ...+.+....+.++| .+++.|||+.+ .+..+...+.+... ...+++
T Consensus 273 --------~~g~piG~~--~----~~~~~~~~~~l~~gd-~lvl~tDGv~Ea~~~~~~~~~~~~~~~~~~~~--~~~~~~ 335 (367)
T COG2208 273 --------ALGLPIGLL--P----DYQYEVASLQLEPGD-LLVLYTDGVTEARNSDGEFFGLERLLKILGRL--LGQPAE 335 (367)
T ss_pred --------CCCceeeec--C----CccchheeEEecCCC-EEEEEcCCeeeeecCCccEecHHHHHHHHHHH--hCCCHH
Confidence 123344421 1 124566778888866 89999999998 45666666666653 335788
Q ss_pred HHHHHHHHHHHHh---CCCCCCcEEEEEEec
Q 027270 196 AVSRRLVREAVLE---RRCKDNCTAIVIIFR 223 (225)
Q Consensus 196 ~~a~~l~~~A~~~---~~~~DNiTvivv~~~ 223 (225)
++++.+.+....- ....||+|++++++.
T Consensus 336 e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~ 366 (367)
T COG2208 336 EILEAILESLEELQGDQIQDDDITLLVLKVK 366 (367)
T ss_pred HHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence 8888888886532 235688999999975
No 20
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=58.13 E-value=22 Score=28.72 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=32.3
Q ss_pred eEEEEecCccc-----------cccChHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 027270 162 HFIILGCDGLW-----------GVFGPSDAVEFVQKLLKEGLSVTAVSRRLVREAV 206 (225)
Q Consensus 162 ~~lil~SDGl~-----------d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~A~ 206 (225)
+-++..|.|+| |+|.++...+.+.+.-.+..-|.++|..|++.-.
T Consensus 72 DTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq 127 (237)
T COG3700 72 DTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQ 127 (237)
T ss_pred CeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence 37889999998 5666776666655544444568899999998754
No 21
>PF09436 DUF2016: Domain of unknown function (DUF2016); InterPro: IPR018560 This entry represents the N-terminal of proteins that contain a ubiquitin domain.
Probab=56.53 E-value=7.5 Score=26.35 Aligned_cols=21 Identities=10% Similarity=0.268 Sum_probs=15.2
Q ss_pred cCCCeEEEEecCccccccChH
Q 027270 158 TERDHFIILGCDGLWGVFGPS 178 (225)
Q Consensus 158 ~~~~~~lil~SDGl~d~l~~~ 178 (225)
...++.+++|+||+|=.+...
T Consensus 24 ~~~G~Rllva~nGv~lEv~r~ 44 (72)
T PF09436_consen 24 ERPGHRLLVASNGVFLEVRRP 44 (72)
T ss_pred ccCCcEEEEecCcEEEEEech
Confidence 334567999999999665543
No 22
>PF05785 CNF1: Rho-activating domain of cytotoxic necrotizing factor; InterPro: IPR008430 This entry represents several bacterial cytotoxic necrotizing factor proteins as well as related dermonecrotic toxin (DNT) from Bordetella species. Cytotoxic necrotizing factor 1 (CNF1) is a toxin whose structure from Escherichia coli revealed a 4-layer alpha/beta/beta/alpha structure containing mixed beta-sheets []. CNF1 is expressed in strains of E. coli causing uropathogenic and neonatal meningitis. CNF1 alters host cell actin cytoskeleton and promotes bacterial invasion of the blood-brain barrier endothelial cells []. CNF1 belongs to a unique group of large cytotoxins that cause constitutive activation of Rho guanosine triphosphatases (GTPases), which are key regulators of the actin cytoskeleton []. Bordetella dermonecrotic toxin (DNT) stimulates the assembly of actin stress fibres and focal adhesions by deamidating or polyaminating Gln63 of the small GTPase Rho. DNT is an A-B toxin composed of an N-terminal receptor-binding (B) domain and a C-terminal enzymatically active (A) domain [].; PDB: 1HZG_A 1HQ0_A.
Probab=47.15 E-value=23 Score=30.43 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=19.1
Q ss_pred CcCCCceeEEEEEECCEEEEEEccCC
Q 027270 45 GWQDGATAVCIWILGRTVFVANIGDA 70 (225)
Q Consensus 45 ~~~~GtT~~~~~i~~~~l~vanvGDS 70 (225)
...+|||.+.+ +.++.+|..|+|-+
T Consensus 129 G~LSGCT~i~A-~K~~~~y~~HtGk~ 153 (281)
T PF05785_consen 129 GALSGCTMIYA-RKDNYFYAYHTGKS 153 (281)
T ss_dssp --BSS-EEEEE-EETTEEEEEEEEES
T ss_pred CccCCCEEEEE-EcCCeEEEEEcCCC
Confidence 34589998877 78999999999966
No 23
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=40.99 E-value=74 Score=20.42 Aligned_cols=40 Identities=20% Similarity=0.342 Sum_probs=16.6
Q ss_pred EEEEecCccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027270 163 FIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 204 (225)
Q Consensus 163 ~lil~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~ 204 (225)
++++..++-. ..-.+....+++.+....+..++++.++++
T Consensus 3 ~vll~~~~~~--~~Ln~~a~~Iw~~~~g~~t~~ei~~~l~~~ 42 (68)
T PF05402_consen 3 YVLLDPESGE--FTLNETAAFIWELLDGPRTVEEIVDALAEE 42 (68)
T ss_dssp EEEE------------THHHHHHHH--SSS-HHHHHHHHHHH
T ss_pred EEEEeCCCCC--ccccHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 4444444433 244455666666666556677777666654
No 24
>PF12095 DUF3571: Protein of unknown function (DUF3571); InterPro: IPR021954 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 85 to 97 amino acids in length. ; PDB: 2KRX_A.
Probab=37.29 E-value=1.3e+02 Score=20.98 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCCeEEEEecCccccccChHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHH
Q 027270 159 ERDHFIILGCDGLWGVFGPSDAVEFVQKLLKEG----------LSVTAVSRRLVREAV 206 (225)
Q Consensus 159 ~~~~~lil~SDGl~d~l~~~ei~~~v~~~~~~~----------~~~~~~a~~l~~~A~ 206 (225)
+.|.|+||-.+-==.+++.+|+..-+..++... .+.++.|+.|++.++
T Consensus 8 ~~d~yVvLEp~~~Eqflt~~Ell~~Lk~~L~~~~~LP~dL~~~~s~~~qa~~Lldt~C 65 (83)
T PF12095_consen 8 QEDHYVVLEPGQPEQFLTPEELLEKLKEWLQNQDDLPPDLAKFSSVEEQAQYLLDTAC 65 (83)
T ss_dssp ----EEEEESSS-SEEE-HHHHHHHHHHHHHHTTTS-HHHHH---HHHHHHHHHHH--
T ss_pred ccCCEEEecCCCCcccCCHHHHHHHHHHHHHcCCCCCHHHHhCCCHHHHHHHHHHhce
Confidence 456688888766666899999988888877532 256788899999886
No 25
>TIGR03859 PQQ_PqqD coenzyme PQQ biosynthesis protein PqqD. This model identifies PqqD, a protein involved in the final steps of the biosynthesis of pyrroloquinoline quinone, coenzyme PQQ.
Probab=34.42 E-value=99 Score=21.06 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=28.5
Q ss_pred CeEEEEecCccccccChHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 027270 161 DHFIILGCDGLWGVFGPSDAVEFVQKLLKEGLSVTAVSRRLVRE 204 (225)
Q Consensus 161 ~~~lil~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~l~~~ 204 (225)
++++|+...| ++.-+++...|++.+....+..++++.|.++
T Consensus 16 ~~~Vl~~p~~---~~~Ln~~g~~Iw~lldg~~tv~eI~~~L~~~ 56 (81)
T TIGR03859 16 DCYVLLYPEG---MVKLNDSAGEILELCDGKRSLAEIIQELAQR 56 (81)
T ss_pred CcEEEEcCCc---eeeeChHHHHHHHHccCCCcHHHHHHHHHHH
Confidence 4567776654 4556677777888777777777777777654
No 26
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=31.68 E-value=86 Score=16.56 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=16.3
Q ss_pred EEEECCEEEEEEccCCcEEEE
Q 027270 55 IWILGRTVFVANIGDAKAVVA 75 (225)
Q Consensus 55 ~~i~~~~l~vanvGDSr~~l~ 75 (225)
++-.++.+||+-.|..|+..+
T Consensus 8 av~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 8 AVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEETTSEEEEEECCCTEEEEE
T ss_pred EEeCCCCEEEEECCCCEEEEC
Confidence 334788999999999888754
No 27
>cd00534 DHNA_DHNTPE Dihydroneopterin aldolase (DHNA) and 7,8-dihydroneopterin triphosphate epimerase domain (DHNTPE); these enzymes have been designated folB and folX, respectively. Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is DHNA which catalyses the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate. Though it is known that DHNTPE catalyzes the epimerization of dihydroneopterin triphosphate to dihydromonapterin triphosphate, the biological role of this enzyme is still unclear. It is hypothesized that it is not an essential protein since a folX knockout in E. coli has a normal phenoty
Probab=25.79 E-value=2.6e+02 Score=20.19 Aligned_cols=53 Identities=8% Similarity=0.135 Sum_probs=37.3
Q ss_pred ecCccccccChHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCCCCCcEEEE
Q 027270 167 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIV 219 (225)
Q Consensus 167 ~SDGl~d~l~~~ei~~~v~~~~~~~--~~~~~~a~~l~~~A~~~~~~~DNiTviv 219 (225)
.||.+-+.++-.++.+.+....... ...+.+|+.+++..+.....-..+++-|
T Consensus 43 ~~D~l~~tidY~~l~~~i~~~~~~~~~~llE~La~~ia~~i~~~~~~v~~v~v~v 97 (118)
T cd00534 43 ESDDLADTLNYAEVAKLIKKIVEGSPFKLIETLAEEIADILLEDYPKVSAIKVKV 97 (118)
T ss_pred ccCChhhccCHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHhCCCceEEEEEE
Confidence 5788888899999998888876543 3678889999998774323334444444
No 28
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=25.32 E-value=1.4e+02 Score=19.44 Aligned_cols=26 Identities=8% Similarity=0.241 Sum_probs=21.5
Q ss_pred cChHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 027270 175 FGPSDAVEFVQKLLKEGLSVTAVSRRLVR 203 (225)
Q Consensus 175 l~~~ei~~~v~~~~~~~~~~~~~a~~l~~ 203 (225)
-+++||..++..+ +++|.+++++|+.
T Consensus 19 hse~eIya~L~ec---nMDpnea~qrLL~ 44 (60)
T PF06972_consen 19 HSEEEIYAMLKEC---NMDPNEAVQRLLS 44 (60)
T ss_pred CCHHHHHHHHHHh---CCCHHHHHHHHHh
Confidence 5788998888776 4689999999987
No 29
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=24.18 E-value=1.1e+02 Score=17.06 Aligned_cols=20 Identities=25% Similarity=0.506 Sum_probs=15.9
Q ss_pred CCEEEEEEccCCcEEEEEec
Q 027270 59 GRTVFVANIGDAKAVVARSS 78 (225)
Q Consensus 59 ~~~l~vanvGDSr~~l~~~~ 78 (225)
++++|++|-|+..+.++...
T Consensus 3 ~~~lyv~~~~~~~v~~id~~ 22 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTA 22 (42)
T ss_pred CCEEEEEeCCCCEEEEEECC
Confidence 56799999988888887644
No 30
>PF14014 DUF4230: Protein of unknown function (DUF4230)
Probab=22.34 E-value=3.5e+02 Score=20.40 Aligned_cols=40 Identities=23% Similarity=0.288 Sum_probs=28.4
Q ss_pred eeCeEEEEEecCCCeEEEEecCccccccChHHHHHHHHHH
Q 027270 148 ATPDIHSFEVTERDHFIILGCDGLWGVFGPSDAVEFVQKL 187 (225)
Q Consensus 148 ~~p~i~~~~l~~~~~~lil~SDGl~d~l~~~ei~~~v~~~ 187 (225)
+.|.+....++++.--++-...|+|..++.++..++....
T Consensus 76 P~~~i~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 115 (157)
T PF14014_consen 76 PPPEILSVEIDEDSIKVYDEKGGWFNPITPEDQNEAQKEA 115 (157)
T ss_pred CCcEEeeeecCccceEEEEccCCccCCCCHHHHHHHHHHH
Confidence 4677777787765545656888888888887766665553
No 31
>TIGR00525 folB dihydroneopterin aldolase. This model describes a bacterial dihydroneopterin aldolase, shown to form homo-octamers in E. coli. The equivalent activity is catalyzed by domains of larger folate biosynthesis proteins in other systems. The closely related parologous enzyme in E. coli, dihydroneopterin triphosphate epimerase, which is also homo-octameric, and dihydroneopterin aldolase domains of larger proteins, score below the trusted cutoff but may score well above the noise cutoff.
Probab=22.04 E-value=3.1e+02 Score=19.74 Aligned_cols=56 Identities=11% Similarity=0.053 Sum_probs=39.4
Q ss_pred ecCccccccChHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHhCCCCCCcEEEEEEe
Q 027270 167 GCDGLWGVFGPSDAVEFVQKLLKEG--LSVTAVSRRLVREAVLERRCKDNCTAIVIIF 222 (225)
Q Consensus 167 ~SDGl~d~l~~~ei~~~v~~~~~~~--~~~~~~a~~l~~~A~~~~~~~DNiTvivv~~ 222 (225)
.||.+-+.++-.++.+.+....... ...+.+|+.+++..+.....-+-+++-+-+.
T Consensus 42 ~~D~l~~tidY~~v~~~i~~~~~~~~~~llE~la~~Ia~~i~~~~~~v~~v~v~i~Kp 99 (116)
T TIGR00525 42 ESDDLGDTVNYAELYSAIEEIVAEKPRDLIETVAYRIADRLFADFPQVQRVKVRVSKP 99 (116)
T ss_pred ccCCchhccCHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHCCCceEEEEEEEeC
Confidence 4788888899889988888876543 3578889999988764334345555555443
Done!