Query 027271
Match_columns 225
No_of_seqs 120 out of 585
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 12:04:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3chm_A COP9 signalosome comple 100.0 3.9E-48 1.4E-52 317.8 14.2 168 2-169 2-169 (169)
2 4b4t_O 26S proteasome regulato 100.0 1.4E-34 4.8E-39 264.9 7.1 169 23-193 211-389 (393)
3 3txn_A 26S proteasome regulato 99.5 6.9E-13 2.3E-17 121.4 13.5 159 24-187 221-389 (394)
4 4b4t_P 26S proteasome regulato 99.0 5.6E-10 1.9E-14 103.2 8.2 161 25-198 260-436 (445)
5 4b4t_R RPN7, 26S proteasome re 98.9 4.3E-09 1.5E-13 96.6 11.1 136 24-161 248-397 (429)
6 3t5x_A PCI domain-containing p 98.7 6.6E-09 2.3E-13 86.8 4.0 96 61-157 82-193 (203)
7 4b4t_Q 26S proteasome regulato 98.5 1.4E-07 4.8E-12 83.0 6.1 120 58-189 295-424 (434)
8 1ufm_A COP9 complex subunit 4; 98.4 5.5E-07 1.9E-11 65.1 7.1 63 95-159 16-78 (84)
9 4b4t_S RPN3, 26S proteasome re 98.2 1.1E-06 3.7E-11 82.8 4.7 94 60-154 343-445 (523)
10 3t5v_B Nuclear mRNA export pro 97.8 1.2E-05 4.1E-10 74.7 4.0 95 62-157 299-429 (455)
11 1wi9_A Protein C20ORF116 homol 94.5 0.052 1.8E-06 37.7 4.5 55 99-155 11-65 (72)
12 4b0z_A RPN12, 26S proteasome r 94.2 0.07 2.4E-06 44.7 5.8 74 60-134 136-214 (229)
13 2hzt_A Putative HTH-type trans 89.2 3.2 0.00011 29.8 9.1 69 107-180 25-94 (107)
14 1qbj_A Protein (double-strande 86.5 2.1 7.1E-05 29.9 6.3 57 95-154 13-69 (81)
15 1qgp_A Protein (double strande 86.2 1.7 6E-05 29.8 5.7 49 95-145 17-65 (77)
16 3r0a_A Putative transcriptiona 86.0 1.4 5E-05 32.6 5.6 82 101-188 33-118 (123)
17 3df8_A Possible HXLR family tr 84.1 6 0.0002 28.6 8.2 79 94-181 27-106 (111)
18 3g3z_A NMB1585, transcriptiona 83.7 5.2 0.00018 29.4 7.9 41 109-151 45-85 (145)
19 2d1h_A ST1889, 109AA long hypo 82.9 7.2 0.00025 26.9 8.0 74 102-182 29-105 (109)
20 1ub9_A Hypothetical protein PH 82.4 6 0.0002 27.1 7.4 38 108-147 29-66 (100)
21 3lwf_A LIN1550 protein, putati 82.2 2.7 9.2E-05 33.0 5.9 59 94-155 29-87 (159)
22 3t8r_A Staphylococcus aureus C 82.0 2.1 7.2E-05 32.8 5.1 58 95-155 14-71 (143)
23 1z7u_A Hypothetical protein EF 81.9 9.2 0.00031 27.5 8.5 68 108-180 34-102 (112)
24 1i1g_A Transcriptional regulat 81.7 1.3 4.4E-05 33.1 3.7 37 106-144 15-51 (141)
25 2gxg_A 146AA long hypothetical 81.7 7.3 0.00025 28.5 8.0 44 107-152 48-91 (146)
26 3bpv_A Transcriptional regulat 81.2 5.1 0.00017 29.0 6.9 47 107-155 41-87 (138)
27 3cuo_A Uncharacterized HTH-typ 81.1 9.3 0.00032 26.1 8.0 41 105-147 34-74 (99)
28 1lj9_A Transcriptional regulat 80.4 5.5 0.00019 29.2 6.9 43 108-152 42-84 (144)
29 4aik_A Transcriptional regulat 79.4 6.9 0.00024 29.6 7.3 57 101-159 38-94 (151)
30 3f6o_A Probable transcriptiona 79.3 5.3 0.00018 29.0 6.4 48 94-147 20-67 (118)
31 2kko_A Possible transcriptiona 79.1 7 0.00024 28.0 6.9 62 108-179 37-98 (108)
32 2y75_A HTH-type transcriptiona 79.0 3.7 0.00013 30.3 5.5 48 95-144 12-59 (129)
33 2fsw_A PG_0823 protein; alpha- 78.2 9.1 0.00031 27.2 7.3 68 107-179 36-104 (107)
34 2oqg_A Possible transcriptiona 78.2 9.9 0.00034 26.8 7.5 37 108-146 33-69 (114)
35 1yyv_A Putative transcriptiona 77.5 16 0.00054 27.3 8.8 80 94-180 35-115 (131)
36 2v79_A DNA replication protein 77.4 20 0.00068 27.1 9.4 73 95-179 36-111 (135)
37 2a61_A Transcriptional regulat 76.9 4.1 0.00014 29.8 5.2 47 108-156 46-92 (145)
38 2fbh_A Transcriptional regulat 76.7 8.7 0.0003 27.9 7.0 46 106-153 49-94 (146)
39 1sfx_A Conserved hypothetical 76.1 16 0.00054 25.0 8.5 38 108-147 33-70 (109)
40 2cg4_A Regulatory protein ASNC 75.1 3.9 0.00013 31.0 4.7 47 100-148 13-62 (152)
41 2p5v_A Transcriptional regulat 75.0 3.5 0.00012 31.7 4.5 42 105-148 20-64 (162)
42 1xn7_A Hypothetical protein YH 75.0 3.4 0.00012 28.6 4.0 43 98-142 5-47 (78)
43 1ylf_A RRF2 family protein; st 74.8 4.6 0.00016 30.9 5.1 48 95-145 17-64 (149)
44 2cfx_A HTH-type transcriptiona 74.8 3 0.0001 31.4 4.0 46 101-148 11-59 (144)
45 4hbl_A Transcriptional regulat 74.5 5.9 0.0002 29.5 5.6 45 108-154 54-98 (149)
46 4b4t_T 26S proteasome regulato 74.3 7.9 0.00027 33.0 6.9 90 44-134 125-223 (274)
47 1oyi_A Double-stranded RNA-bin 74.2 5.1 0.00017 28.2 4.7 44 94-143 19-62 (82)
48 2pn6_A ST1022, 150AA long hypo 74.2 7.5 0.00025 29.2 6.2 47 100-148 8-57 (150)
49 3k0l_A Repressor protein; heli 74.0 7.1 0.00024 29.4 6.0 48 108-157 59-106 (162)
50 3i4p_A Transcriptional regulat 73.7 3.6 0.00012 31.8 4.3 48 99-148 7-57 (162)
51 3deu_A Transcriptional regulat 72.8 12 0.00041 28.5 7.2 49 107-157 66-114 (166)
52 2dbb_A Putative HTH-type trans 72.4 3.7 0.00013 31.0 4.0 46 101-148 15-63 (151)
53 3s2w_A Transcriptional regulat 71.7 7.4 0.00025 29.2 5.6 48 108-157 63-110 (159)
54 2f2e_A PA1607; transcription f 71.7 15 0.00053 27.7 7.5 41 108-150 36-76 (146)
55 2e1c_A Putative HTH-type trans 71.5 3.2 0.00011 32.6 3.5 41 105-147 37-80 (171)
56 3gpv_A Transcriptional regulat 71.4 18 0.0006 27.7 7.8 107 109-222 16-134 (148)
57 3bja_A Transcriptional regulat 70.9 6.1 0.00021 28.6 4.8 45 107-153 45-89 (139)
58 3k69_A Putative transcription 70.5 7.4 0.00025 30.3 5.5 56 95-154 15-70 (162)
59 3cdh_A Transcriptional regulat 70.4 7.9 0.00027 28.7 5.5 44 106-151 54-97 (155)
60 4a5n_A Uncharacterized HTH-typ 70.0 32 0.0011 25.8 10.8 79 95-180 27-106 (131)
61 2rdp_A Putative transcriptiona 70.0 8.9 0.0003 28.2 5.6 45 108-154 55-99 (150)
62 3kp7_A Transcriptional regulat 69.8 7.3 0.00025 28.9 5.1 46 106-153 48-95 (151)
63 2eth_A Transcriptional regulat 69.5 11 0.00039 27.9 6.3 42 109-152 58-99 (154)
64 2jt1_A PEFI protein; solution 69.3 3.7 0.00013 28.4 3.0 35 107-143 22-56 (77)
65 3nrv_A Putative transcriptiona 69.1 6 0.00021 29.1 4.5 43 108-152 53-95 (148)
66 3eco_A MEPR; mutlidrug efflux 68.8 13 0.00043 27.0 6.2 47 108-156 46-92 (139)
67 3jth_A Transcription activator 68.8 15 0.00051 25.3 6.4 39 108-148 35-73 (98)
68 2k02_A Ferrous iron transport 68.7 3.9 0.00013 29.0 3.1 44 99-144 6-49 (87)
69 2cyy_A Putative HTH-type trans 68.5 3.9 0.00013 31.0 3.4 42 101-144 13-54 (151)
70 1ku9_A Hypothetical protein MJ 68.4 30 0.001 24.9 10.7 56 95-154 29-85 (152)
71 1xd7_A YWNA; structural genomi 67.6 8.8 0.0003 29.1 5.2 34 111-146 25-58 (145)
72 2p4w_A Transcriptional regulat 67.6 46 0.0016 26.7 13.2 38 108-147 27-64 (202)
73 2htj_A P fimbrial regulatory p 67.5 14 0.00047 24.8 5.8 35 108-144 13-47 (81)
74 1s3j_A YUSO protein; structura 67.0 10 0.00035 28.0 5.5 43 107-151 49-91 (155)
75 2fbi_A Probable transcriptiona 65.5 26 0.00089 25.1 7.4 46 108-155 49-94 (142)
76 3cjn_A Transcriptional regulat 64.8 14 0.00046 27.6 5.8 43 107-151 64-106 (162)
77 3bj6_A Transcriptional regulat 64.1 14 0.00049 27.1 5.7 42 108-151 53-94 (152)
78 2vn2_A DNAD, chromosome replic 63.8 18 0.00062 26.7 6.2 81 87-179 30-111 (128)
79 2ia0_A Putative HTH-type trans 63.3 7.1 0.00024 30.5 4.0 42 105-148 27-71 (171)
80 3tgn_A ADC operon repressor AD 63.2 40 0.0014 24.3 9.3 46 110-157 52-97 (146)
81 2heo_A Z-DNA binding protein 1 62.3 9.3 0.00032 25.1 3.9 44 96-143 14-57 (67)
82 2nnn_A Probable transcriptiona 62.0 17 0.00059 26.0 5.8 45 108-154 51-95 (140)
83 2pg4_A Uncharacterized protein 61.3 7.8 0.00027 26.8 3.6 45 96-142 16-62 (95)
84 3oop_A LIN2960 protein; protei 60.9 14 0.00048 26.9 5.1 43 108-152 50-92 (143)
85 3pqk_A Biofilm growth-associat 59.0 29 0.001 24.0 6.4 39 108-148 35-73 (102)
86 1uly_A Hypothetical protein PH 58.9 66 0.0022 25.5 12.0 35 108-144 32-66 (192)
87 2w25_A Probable transcriptiona 58.6 13 0.00043 28.0 4.6 37 106-144 18-54 (150)
88 2fa5_A Transcriptional regulat 58.4 12 0.0004 27.9 4.4 43 107-151 61-103 (162)
89 3boq_A Transcriptional regulat 58.3 10 0.00034 28.3 4.0 46 106-153 59-104 (160)
90 3gp4_A Transcriptional regulat 58.0 35 0.0012 25.8 7.1 31 110-146 3-34 (142)
91 1jgs_A Multiple antibiotic res 57.9 21 0.00071 25.6 5.6 45 108-154 47-91 (138)
92 2hr3_A Probable transcriptiona 57.2 51 0.0018 23.7 8.2 45 107-153 48-92 (147)
93 1u2w_A CADC repressor, cadmium 56.4 15 0.00051 26.8 4.5 38 107-146 54-91 (122)
94 1r1u_A CZRA, repressor protein 56.2 19 0.00066 25.3 5.0 38 108-147 38-75 (106)
95 3t5v_A Nuclear mRNA export pro 55.9 20 0.00067 31.2 5.9 61 72-132 177-247 (316)
96 3bro_A Transcriptional regulat 55.2 49 0.0017 23.5 7.4 42 109-152 50-91 (141)
97 3bdd_A Regulatory protein MARR 55.2 20 0.00068 25.8 5.1 42 108-151 44-85 (142)
98 3hsr_A HTH-type transcriptiona 54.7 23 0.00078 25.8 5.4 49 106-156 47-95 (140)
99 2nyx_A Probable transcriptiona 53.3 32 0.0011 25.9 6.2 45 108-154 58-102 (168)
100 4fla_A Regulation of nuclear P 52.9 49 0.0017 25.7 7.2 55 165-219 68-122 (152)
101 3u2r_A Regulatory protein MARR 52.4 70 0.0024 23.8 8.1 50 107-158 60-109 (168)
102 3e6m_A MARR family transcripti 52.2 9.5 0.00033 28.7 2.9 44 108-153 66-109 (161)
103 3fm5_A Transcriptional regulat 51.1 26 0.00089 25.7 5.3 50 104-155 49-98 (150)
104 3f6v_A Possible transcriptiona 50.8 33 0.0011 26.1 5.9 50 94-149 60-109 (151)
105 1z91_A Organic hydroperoxide r 50.5 16 0.00055 26.6 3.9 41 108-150 53-93 (147)
106 2x4h_A Hypothetical protein SS 50.4 33 0.0011 24.9 5.7 54 87-144 11-64 (139)
107 3ech_A MEXR, multidrug resista 49.6 13 0.00046 27.1 3.3 45 108-154 50-94 (142)
108 2p7v_B Sigma-70, RNA polymeras 48.8 20 0.0007 23.0 3.8 28 107-136 23-50 (68)
109 3f3x_A Transcriptional regulat 48.2 49 0.0017 23.8 6.4 45 111-157 52-96 (144)
110 1j5y_A Transcriptional regulat 46.7 41 0.0014 26.2 6.0 49 93-143 19-69 (187)
111 1ku3_A Sigma factor SIGA; heli 46.0 23 0.00077 23.1 3.7 29 106-136 27-55 (73)
112 1y0u_A Arsenical resistance op 45.7 32 0.0011 23.5 4.7 36 108-145 42-77 (96)
113 1fxk_A Prefoldin; archaeal pro 45.7 56 0.0019 22.9 6.1 54 156-223 52-105 (107)
114 3nqo_A MARR-family transcripti 45.6 1E+02 0.0034 23.7 8.4 50 106-157 54-103 (189)
115 2qvo_A Uncharacterized protein 44.8 44 0.0015 22.8 5.3 48 106-155 27-74 (95)
116 2bv6_A MGRA, HTH-type transcri 43.7 33 0.0011 24.7 4.7 44 108-153 50-93 (142)
117 1r7j_A Conserved hypothetical 43.1 82 0.0028 21.9 10.5 41 100-144 13-53 (95)
118 1tty_A Sigma-A, RNA polymerase 42.9 26 0.00088 23.8 3.7 29 106-136 35-63 (87)
119 1q1h_A TFE, transcription fact 42.6 22 0.00076 25.0 3.5 38 105-144 29-66 (110)
120 3t72_q RNA polymerase sigma fa 42.4 24 0.00082 25.2 3.6 29 106-136 36-64 (99)
121 2jsc_A Transcriptional regulat 41.6 49 0.0017 23.7 5.3 38 108-147 33-70 (118)
122 2frh_A SARA, staphylococcal ac 41.1 28 0.00097 25.1 4.0 48 107-156 51-98 (127)
123 1on2_A Transcriptional regulat 40.6 39 0.0013 24.6 4.8 43 100-144 13-55 (142)
124 2qww_A Transcriptional regulat 40.5 25 0.00084 25.8 3.6 42 108-151 54-97 (154)
125 1z05_A Transcriptional regulat 40.2 24 0.00084 31.2 4.1 50 93-144 37-86 (429)
126 3c3f_A Alpha/beta peptide with 39.6 45 0.0016 19.3 3.7 30 192-221 3-32 (34)
127 2pex_A Transcriptional regulat 39.4 37 0.0013 24.8 4.5 43 107-151 59-101 (153)
128 4b8x_A SCO5413, possible MARR- 39.3 60 0.0021 23.9 5.7 61 95-158 38-98 (147)
129 1tc3_C Protein (TC3 transposas 39.2 24 0.00082 20.2 2.8 22 110-132 22-43 (51)
130 2fbk_A Transcriptional regulat 39.2 40 0.0014 25.7 4.8 41 109-151 86-126 (181)
131 3hug_A RNA polymerase sigma fa 38.5 27 0.00093 23.8 3.3 27 108-136 52-78 (92)
132 1eij_A Hypothetical protein MT 36.0 13 0.00044 26.0 1.2 22 125-147 37-58 (80)
133 2zqm_A Prefoldin beta subunit 35.8 68 0.0023 22.8 5.3 42 156-197 57-98 (117)
134 2bni_A General control protein 35.6 54 0.0019 19.0 3.6 31 191-221 2-32 (34)
135 1r8e_A Multidrug-efflux transp 35.5 1.6E+02 0.0055 23.8 8.3 100 108-219 4-115 (278)
136 2xzr_A Immunoglobulin-binding 35.4 1.2E+02 0.0042 21.8 8.3 52 170-221 53-107 (114)
137 2oxj_A Hybrid alpha/beta pepti 35.4 62 0.0021 18.7 3.8 31 191-221 2-32 (34)
138 3c57_A Two component transcrip 35.0 82 0.0028 21.6 5.5 27 108-136 41-67 (95)
139 1r1t_A Transcriptional repress 34.9 94 0.0032 22.4 6.0 37 108-146 58-94 (122)
140 2wte_A CSA3; antiviral protein 34.7 54 0.0019 27.1 5.1 44 108-155 165-208 (244)
141 2v71_A Nuclear distribution pr 34.6 91 0.0031 25.1 6.2 51 170-220 8-58 (189)
142 3ulq_B Transcriptional regulat 34.6 52 0.0018 22.7 4.3 25 109-135 44-68 (90)
143 1uo4_A General control protein 33.9 64 0.0022 18.7 3.7 31 192-222 3-33 (34)
144 2w48_A Sorbitol operon regulat 33.4 63 0.0022 27.3 5.5 51 95-147 7-57 (315)
145 2fh0_A Hypothetical 16.0 kDa p 33.3 14 0.00048 25.9 1.0 22 125-147 35-56 (81)
146 2hy6_A General control protein 32.7 55 0.0019 19.0 3.3 30 192-221 3-32 (34)
147 2qlz_A Transcription factor PF 32.3 48 0.0016 27.3 4.4 44 107-155 176-219 (232)
148 2lfw_A PHYR sigma-like domain; 31.3 36 0.0012 25.5 3.2 27 108-136 108-134 (157)
149 2gqq_A Leucine-responsive regu 31.2 13 0.00046 28.4 0.7 38 105-144 23-60 (163)
150 2o8x_A Probable RNA polymerase 30.8 98 0.0033 19.2 6.6 26 109-136 31-56 (70)
151 1kd8_B GABH BLL, GCN4 acid bas 30.7 73 0.0025 18.7 3.6 29 192-220 3-31 (36)
152 3b73_A PHIH1 repressor-like pr 30.3 32 0.0011 25.1 2.6 38 105-144 23-62 (111)
153 2yo3_A General control protein 30.2 74 0.0025 27.1 5.2 44 178-221 218-261 (268)
154 2jpc_A SSRB; DNA binding prote 30.0 48 0.0017 20.3 3.2 23 109-132 13-35 (61)
155 3szt_A QCSR, quorum-sensing co 29.7 56 0.0019 26.4 4.4 23 109-132 190-212 (237)
156 3hrs_A Metalloregulator SCAR; 29.1 80 0.0027 25.2 5.2 52 99-155 10-61 (214)
157 1l3l_A Transcriptional activat 28.6 72 0.0025 25.5 4.8 23 109-132 188-210 (234)
158 2fxa_A Protease production reg 28.2 43 0.0015 26.5 3.3 45 108-154 61-105 (207)
159 3m48_A General control protein 28.2 84 0.0029 18.1 3.6 30 193-222 3-32 (33)
160 2p5k_A Arginine repressor; DNA 28.1 1.1E+02 0.0037 18.8 5.2 42 95-141 5-51 (64)
161 1xmk_A Double-stranded RNA-spe 28.0 40 0.0014 23.2 2.6 37 104-142 20-57 (79)
162 3hrn_A Transient receptor pote 27.8 1.4E+02 0.0046 19.9 7.9 56 162-217 3-58 (64)
163 1v4r_A Transcriptional repress 27.7 87 0.003 21.6 4.6 51 92-144 17-68 (102)
164 1rz4_A Eukaryotic translation 27.7 2.5E+02 0.0085 22.8 9.5 75 58-132 98-175 (226)
165 3mzy_A RNA polymerase sigma-H 27.5 49 0.0017 24.0 3.4 27 108-136 123-149 (164)
166 1je8_A Nitrate/nitrite respons 27.5 89 0.003 20.8 4.4 25 109-135 36-60 (82)
167 2q0o_A Probable transcriptiona 27.1 72 0.0025 25.5 4.6 23 109-132 190-212 (236)
168 1z6r_A MLC protein; transcript 27.0 89 0.003 27.1 5.5 44 98-143 19-62 (406)
169 1mkm_A ICLR transcriptional re 26.8 67 0.0023 26.1 4.4 45 98-144 11-56 (249)
170 2b0l_A GTP-sensing transcripti 26.6 1.4E+02 0.0049 20.9 5.6 42 102-145 35-77 (102)
171 1r8d_A Transcription activator 26.2 1.7E+02 0.0058 20.5 6.3 28 110-143 3-30 (109)
172 2lkp_A Transcriptional regulat 26.0 1E+02 0.0035 21.6 4.8 37 108-146 44-80 (119)
173 3jw4_A Transcriptional regulat 25.9 17 0.00058 26.7 0.4 44 108-153 56-99 (148)
174 3gva_A Alkyltransferase-like p 25.5 56 0.0019 24.2 3.2 27 96-122 9-35 (116)
175 1x3u_A Transcriptional regulat 25.4 1.1E+02 0.0038 19.6 4.5 27 108-136 30-56 (79)
176 3r4k_A Transcriptional regulat 25.4 80 0.0027 25.9 4.6 56 96-155 7-63 (260)
177 3kor_A Possible Trp repressor; 25.2 1.1E+02 0.0038 22.8 4.8 37 98-139 66-102 (119)
178 1t3j_A Mitofusin 1; coiled coi 25.2 1.2E+02 0.004 21.8 4.8 36 168-203 32-67 (96)
179 2oa4_A SIR5; structure, struct 25.1 52 0.0018 23.8 2.9 43 97-143 39-81 (101)
180 2x48_A CAG38821; archeal virus 24.9 55 0.0019 19.7 2.7 21 110-131 32-52 (55)
181 1or7_A Sigma-24, RNA polymeras 24.8 58 0.002 24.6 3.4 27 108-136 155-181 (194)
182 1fse_A GERE; helix-turn-helix 24.7 1.2E+02 0.0041 19.0 4.6 23 109-132 26-48 (74)
183 2k6x_A Sigma-A, RNA polymerase 24.7 53 0.0018 21.8 2.7 38 100-139 14-56 (72)
184 2l16_A SEC-independent protein 23.8 58 0.002 22.4 2.8 31 161-191 20-50 (78)
185 2xrn_A HTH-type transcriptiona 23.3 90 0.0031 25.3 4.5 55 96-154 7-62 (241)
186 1kd8_A GABH AIV, GCN4 acid bas 23.3 78 0.0027 18.5 2.8 29 192-220 3-31 (36)
187 2o0y_A Transcriptional regulat 23.1 1.2E+02 0.004 24.9 5.2 46 96-143 24-70 (260)
188 2cru_A Programmed cell death p 23.0 27 0.00091 26.2 1.0 22 125-147 67-88 (118)
189 3k2z_A LEXA repressor; winged 22.6 1.4E+02 0.0047 23.2 5.3 38 105-144 20-57 (196)
190 2rnj_A Response regulator prot 22.5 67 0.0023 21.7 3.0 26 109-136 44-69 (91)
191 2kif_A O6-methylguanine-DNA me 22.1 56 0.0019 23.8 2.6 26 97-122 8-33 (108)
192 2dk5_A DNA-directed RNA polyme 22.1 1.2E+02 0.004 21.1 4.3 48 107-156 34-83 (91)
193 2hvu_A PDCD5-like protein; YMR 21.7 28 0.00096 26.0 0.9 22 125-147 70-91 (116)
194 2xvc_A ESCRT-III, SSO0910; cel 21.6 1.1E+02 0.0037 20.0 3.6 36 105-142 21-56 (59)
195 1bia_A BIRA bifunctional prote 21.5 1.1E+02 0.0039 25.9 4.9 43 98-142 8-50 (321)
196 3gnl_A Uncharacterized protein 21.1 2.3E+02 0.0078 23.3 6.6 97 124-222 129-237 (244)
197 2g7u_A Transcriptional regulat 21.0 1.4E+02 0.0048 24.3 5.2 54 96-155 15-69 (257)
198 1ldj_A Cullin homolog 1, CUL-1 20.9 1E+02 0.0034 29.8 4.9 43 98-142 592-634 (760)
199 1tbx_A ORF F-93, hypothetical 20.8 2E+02 0.0067 19.2 9.7 45 107-153 20-68 (99)
200 1p4w_A RCSB; solution structur 20.6 85 0.0029 22.0 3.3 23 109-132 49-71 (99)
201 2jxn_A Uncharacterized protein 20.3 33 0.0011 26.0 1.0 22 125-147 70-91 (127)
202 3f2g_A Alkylmercury lyase; MER 20.2 96 0.0033 25.5 4.0 44 100-150 27-70 (220)
203 3lmm_A Uncharacterized protein 20.2 97 0.0033 29.0 4.5 54 96-155 431-489 (583)
204 1jko_C HIN recombinase, DNA-in 20.1 85 0.0029 17.9 2.8 21 110-131 22-42 (52)
205 2ia2_A Putative transcriptiona 20.1 1.2E+02 0.0041 24.8 4.7 46 96-143 22-68 (265)
206 2eqb_B RAB guanine nucleotide 20.1 2.5E+02 0.0084 20.1 7.8 28 194-221 66-93 (97)
No 1
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=100.00 E-value=3.9e-48 Score=317.77 Aligned_cols=168 Identities=79% Similarity=1.223 Sum_probs=157.3
Q ss_pred chhHHHHHHHHHHHHhccCccHHHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhhhhhh
Q 027271 2 DIEQRQAELIDHFVKQASNQKGAALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNNA 81 (225)
Q Consensus 2 ~~~~~~~~~l~~~l~~~~~~~~~~a~~li~~aL~~p~iy~f~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~d~~~~~ 81 (225)
+++|++.+.|++|+.+++++++.+|.++|++||.+|++|+||+||.+|+|++|++++++|+++||++|++||+.+|.+++
T Consensus 2 ~~~~~~~~~l~~f~~la~~~~~~~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~ 81 (169)
T 3chm_A 2 DIEQKQAEIIDQLVKRASTCKSEALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNA 81 (169)
T ss_dssp --CCCHHHHHHHHHHHHTTSCGGGHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHG
T ss_pred chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhH
Confidence 46899999999999999999999999999999999999999999999999999998899999999999999999999998
Q ss_pred CCCCCcchHHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCC
Q 027271 82 GHLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (225)
Q Consensus 82 ~~~~~L~~~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~ 161 (225)
+.+|.|++.+.+|||+|||++||..++++||++|+++|+|++.++||+|||++||+.|||+|+|||++++|+|+|++||+
T Consensus 82 ~~~p~L~~~~~~KlrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 82 TRLPHLSPDQILKLKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp GGSCCCCHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 88999999999999999999999999999999999999999899999999967999999999999999999999999999
Q ss_pred CCCCcHHH
Q 027271 162 LRPGQLGS 169 (225)
Q Consensus 162 ~~~~q~~~ 169 (225)
|+++||+.
T Consensus 162 l~~~qi~~ 169 (169)
T 3chm_A 162 LRPGQLGN 169 (169)
T ss_dssp CCC-----
T ss_pred cCHHhccC
Confidence 99999963
No 2
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-34 Score=264.92 Aligned_cols=169 Identities=14% Similarity=0.327 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHhcCCCcccchhhhcCchhhhccC-CCchHHHHHHHHHhcCChhhhhh----hhCCCCCcchH---HHHH
Q 027271 23 GAALGSVIVEATSQPSLFAFSEILAVPNIAEFEG-TENSKYLDMLRLFAHGTWSDYKN----NAGHLPQLVPD---QVLK 94 (225)
Q Consensus 23 ~~~a~~li~~aL~~p~iy~f~eLl~~p~v~~L~~-~~~~~l~~LL~iF~~G~~~d~~~----~~~~~~~L~~~---~~~K 94 (225)
...|+.+++.||.+|++|+||+|+.+|.++.|++ +++.|+++||.+|++||+.+|.+ +.+.+|.+... ..+|
T Consensus 211 ~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~~~~~l~~~~~~l~~k 290 (393)
T 4b4t_O 211 QQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQISKIPILAQHESFLRQK 290 (393)
T ss_dssp HHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhhhCcchhhhHHHHHHH
Confidence 4679999999999999999999999999999975 57899999999999999999986 34456666644 3789
Q ss_pred HHHHHhhhhc--cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHH
Q 027271 95 LKQLTVLTLA--ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (225)
Q Consensus 95 lr~LtLlsL~--~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~ 172 (225)
+|++++++|+ .+++.|||++|++.|+|+ .++||.||| +||+.|+|+|+|||++|+|+|+|++||+|+++||..|.+
T Consensus 291 irll~l~~l~~~~~~~~i~f~~ia~~l~i~-~~evE~lli-~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~ 368 (393)
T 4b4t_O 291 ICLMTLIETVFVKNIRMLSFEDISKATHLP-KDNVEHLVM-RAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKD 368 (393)
T ss_dssp HHHHHHHHHHCSSSCCCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHSCSSSCEETTTTEECC------------------
T ss_pred HHHHHHHHHhccCCCCcCcHHHHHHHhCcC-HHHHHHHHH-HHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHH
Confidence 9999999988 467899999999999997 999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027271 173 TLSNWLTTSDNLLISIQEKIK 193 (225)
Q Consensus 173 ~L~~W~~~v~~~l~~ie~~~~ 193 (225)
+|..|+++|++++..|++...
T Consensus 369 ~L~~W~~~v~~l~~~ve~~~~ 389 (393)
T 4b4t_O 369 RLVEWNDQVEKLGKKMEARGQ 389 (393)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999987654
No 3
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=99.45 E-value=6.9e-13 Score=121.38 Aligned_cols=159 Identities=11% Similarity=0.109 Sum_probs=111.6
Q ss_pred HHHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhhhhh----hCCCCC---cc---hHHHH
Q 027271 24 AALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKNN----AGHLPQ---LV---PDQVL 93 (225)
Q Consensus 24 ~~a~~li~~aL~~p~iy~f~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~d~~~~----~~~~~~---L~---~~~~~ 93 (225)
+.+.-++..+|..-+++.+++++..|......+++..|+.+|+..|..|++..|... .+.+.. +. ....+
T Consensus 221 ~~lkYlvL~aLl~~~r~el~~~l~~~~~~~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~ 300 (394)
T 3txn_A 221 TSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYD 300 (394)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHSHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhccccccccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 456778889999999999999999887655555567899999999999999999863 222221 11 23357
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHH
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~ 173 (225)
++|...|+.+..+++.|+++.|++.++++ .+++|.+++ ++|..|.|.|+|||++|+|++....+|+ ...+...+.
T Consensus 301 ~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~-~lI~dg~I~a~IDq~~giv~~~~~~~r~---~~y~~ale~ 375 (394)
T 3txn_A 301 TMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLS-QMILDKKFSGILDQGEGVLIVFEETPVD---KTYERVLET 375 (394)
T ss_dssp HHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCC----------------
T ss_pred HHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEEcCCCCEEEECCCcchh---hHHHHHHHH
Confidence 88999999999999999999999999997 999999999 9999999999999999999998776665 334455678
Q ss_pred HHHHHHHHHHHHHH
Q 027271 174 LSNWLTTSDNLLIS 187 (225)
Q Consensus 174 L~~W~~~v~~~l~~ 187 (225)
+..|...|+.+...
T Consensus 376 l~~ls~vVd~L~~~ 389 (394)
T 3txn_A 376 IQSMGKVVDTLYQK 389 (394)
T ss_dssp --------------
T ss_pred HHHHHHHHHHHHHH
Confidence 88998888776654
No 4
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.01 E-value=5.6e-10 Score=103.20 Aligned_cols=161 Identities=14% Similarity=0.148 Sum_probs=97.6
Q ss_pred HHHHHHHHHhcCCCcccchhhhcCchhhhccCCCchHHHHHHHHHhcCChhhhhh----hhCCCC---C-----cc----
Q 027271 25 ALGSVIVEATSQPSLFAFSEILAVPNIAEFEGTENSKYLDMLRLFAHGTWSDYKN----NAGHLP---Q-----LV---- 88 (225)
Q Consensus 25 ~a~~li~~aL~~p~iy~f~eLl~~p~v~~L~~~~~~~l~~LL~iF~~G~~~d~~~----~~~~~~---~-----L~---- 88 (225)
+...+|...+.+|..-.+..++.-+.... ...+.+++..|+.+|..+++..|.. +...+. . ..
T Consensus 260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~-~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 338 (445)
T 4b4t_P 260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDN-NLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEANKHHW 338 (445)
T ss_dssp HHHHHHHHHHHSSCSSTTHHHHHSHHHHS-SCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSCSSHHH
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHhhcc-cccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcchhhHHH
Confidence 45667778888888877888886543211 1123567889999999999987765 222111 0 11
Q ss_pred hHHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHH
Q 027271 89 PDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLG 168 (225)
Q Consensus 89 ~~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~ 168 (225)
....+.++...|..++..++.|+|+.|++.|+++ .+++|.++. ++|..|.|.|+|||++|+|++.+..+
T Consensus 339 ~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls-~mI~~g~i~akIDq~~giV~F~~~~~--------- 407 (445)
T 4b4t_P 339 EDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYIS-DLVNQGIIYAKVNRPAKIVNFEKPKN--------- 407 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCEEETTTTEEEC--------------
T ss_pred HHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHCCCEEEEEcCCCCEEEECCCCC---------
Confidence 2235567778889999999999999999999997 999999999 99999999999999999988754321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027271 169 SMIQTLSNWLTTSDNLLISIQEKIKWADSM 198 (225)
Q Consensus 169 ~L~~~L~~W~~~v~~~l~~ie~~~~~~~~~ 198 (225)
-.+.|..|..+++.++..|+.-.+-.++.
T Consensus 408 -~~~~l~~W~~~i~~l~~~v~k~~~lI~kE 436 (445)
T 4b4t_P 408 -SSQLLNEWSHNVDELLEHIETIGHLITKE 436 (445)
T ss_dssp ------------------------------
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 24578999999999999887655544444
No 5
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.94 E-value=4.3e-09 Score=96.65 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=101.0
Q ss_pred HHHHHHHHHHhcCCCcccch-hhhcCchhhhc-cCCC-chHHHHHHHHHhcCChhhhhhh-----hCCCC---Ccc---h
Q 027271 24 AALGSVIVEATSQPSLFAFS-EILAVPNIAEF-EGTE-NSKYLDMLRLFAHGTWSDYKNN-----AGHLP---QLV---P 89 (225)
Q Consensus 24 ~~a~~li~~aL~~p~iy~f~-eLl~~p~v~~L-~~~~-~~~l~~LL~iF~~G~~~d~~~~-----~~~~~---~L~---~ 89 (225)
..+.-.+..++..++.-++. .++..|.+... ...+ ..++.+++..|..+.+..|... ...+. -+. .
T Consensus 248 ~~~~y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~ 327 (429)
T 4b4t_R 248 SIATYASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHAD 327 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHH
Confidence 45777777777777665543 36666666543 3222 3467788888888888876541 11111 122 3
Q ss_pred HHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCC
Q 027271 90 DQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRD 161 (225)
Q Consensus 90 ~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~ 161 (225)
...+.+|...+..++.+++.|+++.+|+.+|++ .+++|.++. ++|..|-|.|+||+++|+|++++..+|.
T Consensus 328 ~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~-~lI~~g~l~akID~~~giv~~~~~d~~~ 397 (429)
T 4b4t_R 328 FFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG-KFIPNKQLNCVIDRVNGIVETNRPDNKN 397 (429)
T ss_dssp HHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCEEEETTTTEEEECC-----
T ss_pred HHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH-HHHHcCCeEEEEcCCCCEEEECCCCchh
Confidence 457899999999999999999999999999997 999999999 9999999999999999999998877764
No 6
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=98.71 E-value=6.6e-09 Score=86.80 Aligned_cols=96 Identities=18% Similarity=0.265 Sum_probs=76.3
Q ss_pred HHHHHHHHHhcCChhhhhhhhCCCCC-c----chHHHHHHHHHHhhhhcc------CCcccChHHHHHHcCCC-----Ch
Q 027271 61 KYLDMLRLFAHGTWSDYKNNAGHLPQ-L----VPDQVLKLKQLTVLTLAE------TNKVLPYDELMEELDVT-----NV 124 (225)
Q Consensus 61 ~l~~LL~iF~~G~~~d~~~~~~~~~~-L----~~~~~~Klr~LtLlsL~~------~~~~isy~~I~~~L~i~-----~~ 124 (225)
++.+|..++..||+..|.+.-..... + .-..+.|+|.+.+..+.. ++..||+++|+.++++. |.
T Consensus 82 ~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~~~~~~ 161 (203)
T 3t5x_A 82 QFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQVEDVDI 161 (203)
T ss_dssp GGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTCTTCCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCCCCCCH
Confidence 57899999999999999873211111 1 112357888887777764 68899999999999652 58
Q ss_pred HHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 125 RELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 125 ~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
+|||.+|. ++|+.|.|+|+||+.++++.++..
T Consensus 162 ~evE~ila-~lI~~G~Ikg~I~~~~~~lVlsk~ 193 (203)
T 3t5x_A 162 DEVQCILA-NLIYMGHVKGYISHQHQKLVVSKQ 193 (203)
T ss_dssp HHHHHHHH-HHHHHTSSCEEEETTTTEEEECSS
T ss_pred HHHHHHHH-HHHHcCceEEEEcccccEEEECCC
Confidence 99999999 999999999999999999998754
No 7
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.48 E-value=1.4e-07 Score=83.04 Aligned_cols=120 Identities=13% Similarity=0.117 Sum_probs=79.3
Q ss_pred CchHHHHHHHHHhcCChhhhhhhhC----CCCC---c---chHHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHH
Q 027271 58 ENSKYLDMLRLFAHGTWSDYKNNAG----HLPQ---L---VPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVREL 127 (225)
Q Consensus 58 ~~~~l~~LL~iF~~G~~~d~~~~~~----~~~~---L---~~~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~ev 127 (225)
+..++..++..|..+++..|..... .+.. + .......++...+..++..++.|+++.|++.++++ .+++
T Consensus 295 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~-~~~~ 373 (434)
T 4b4t_Q 295 GIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLD-TQQV 373 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCC-HHHH
T ss_pred hhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcC-HHHH
Confidence 3467888999999999999886321 1111 1 12235677888899999999999999999999997 9999
Q ss_pred HHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Q 027271 128 EDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQ 189 (225)
Q Consensus 128 E~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~L~~W~~~v~~~l~~ie 189 (225)
|.++. ++|..|.|.|+||+.+|+|.+.....++ .....|.+.++++...|+
T Consensus 374 E~~l~-~lI~~~~i~a~id~~~g~v~~~~~~~~~----------~~~~~~l~~~~~l~~~vd 424 (434)
T 4b4t_Q 374 EGKLS-QMILDKIFYGVLDQGNGWLYVYETPNQD----------ATYDSALELVGQLNKVVD 424 (434)
T ss_dssp HHHHH-HHHHHTSSCCEEETTTTEEECC----------------------------------
T ss_pred HHHHH-HHHhCCCcceecccccCeEeeCCCcchh----------HHHHHHHHHHHHHHHHHH
Confidence 99999 9999999999999999999986554432 224445555555444444
No 8
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=98.43 E-value=5.5e-07 Score=65.10 Aligned_cols=63 Identities=14% Similarity=0.261 Sum_probs=54.5
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecc
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAG 159 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~ 159 (225)
+....|..+++.+..|+++.+++.++++ .+++|.++. ++|..|-|.|+|||++++|.+....+
T Consensus 16 v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls-~mI~~~~l~akIDq~~g~V~f~~~e~ 78 (84)
T 1ufm_A 16 VIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIAS-QMITEGRMNGFIDQIDGIVHFETREA 78 (84)
T ss_dssp HHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHH-HHHHTTSSCEEEETTTTEEEECCSSC
T ss_pred HHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHH-HHHhCCcEEEEEeCCCCEEEeCCccc
Confidence 4444455677899999999999999998 999999999 99999999999999999998765433
No 9
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=1.1e-06 Score=82.76 Aligned_cols=94 Identities=12% Similarity=0.211 Sum_probs=71.1
Q ss_pred hHHHHHHHHHhcCChhhhhhhh----C-----CCCCcchHHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHH
Q 027271 60 SKYLDMLRLFAHGTWSDYKNNA----G-----HLPQLVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDF 130 (225)
Q Consensus 60 ~~l~~LL~iF~~G~~~d~~~~~----~-----~~~~L~~~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~l 130 (225)
.+++.|..+|..||+..|.+.- . ..-.|.+....-...--|..+...+..||+.+|+..|+++|.+++|.+
T Consensus 343 ~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~i 422 (523)
T 4b4t_S 343 LPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYM 422 (523)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHH
Confidence 4689999999999999998721 1 111122222222222345556677889999999999999877899999
Q ss_pred HHHHhHhcCccEEEecCCCCEEEE
Q 027271 131 LINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 131 vI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
|- +||..|.|+|+||+.+|.|..
T Consensus 423 VA-kmI~dG~I~A~Idh~~g~v~s 445 (523)
T 4b4t_S 423 VS-RAIRDGVIEAKINHEDGFIET 445 (523)
T ss_dssp HH-HHHHHTSSCCEECTTTCCEEC
T ss_pred HH-HHHHcCCceEEEecCCCEEEe
Confidence 99 999999999999999997764
No 10
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=97.79 E-value=1.2e-05 Score=74.69 Aligned_cols=95 Identities=17% Similarity=0.176 Sum_probs=71.0
Q ss_pred HHHHHHHHhcCChhhhhhhh----CCC-CCcc-hHHHHHHHHHHhhhhc----------cCCcccChHHHHHHcCC----
Q 027271 62 YLDMLRLFAHGTWSDYKNNA----GHL-PQLV-PDQVLKLKQLTVLTLA----------ETNKVLPYDELMEELDV---- 121 (225)
Q Consensus 62 l~~LL~iF~~G~~~d~~~~~----~~~-~~L~-~~~~~Klr~LtLlsL~----------~~~~~isy~~I~~~L~i---- 121 (225)
+..|..++..||+..|.+.- ..+ ..=. -..+.|+|.+++-.|. .+...|++++|+.++++
T Consensus 299 y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~l~~i~~aL~~~~~~ 378 (455)
T 3t5v_B 299 WSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLPYSLIERVLQLSIGP 378 (455)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEEHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeHHHHHHHHhhccCc
Confidence 77899999999999999732 111 1111 2334566665443332 23369999999999984
Q ss_pred ----------------CChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 122 ----------------TNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 122 ----------------~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
.|.+|||.+|. .+|+.|+|+|+||+.++++.++..
T Consensus 379 ~~~~~~~~~~~~~~~~~~~devEcIlA-~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 379 TFEDPGAQEITIYNGIHSPKNVENVLV-TLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp CTTSTTCCCCCTTTSSCCSSCHHHHHH-HHHHHTSCCEEEETTTTEEEECCC
T ss_pred cccccccccccccccCCCHHHHHHHHH-HHHHcCCeEEEEecCCCEEEECCC
Confidence 24889999999 999999999999999999999865
No 11
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.49 E-value=0.052 Score=37.66 Aligned_cols=55 Identities=11% Similarity=0.274 Sum_probs=47.9
Q ss_pred HhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 99 tLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
.++...+..+.++.+++|.++++. ..++-+-+- +....|.|.|-||...+-|+|+
T Consensus 11 ~Fi~yIk~~Kvv~LedLA~~F~l~-t~~~i~RI~-~Le~~g~ltGViDDRGKfIyIs 65 (72)
T 1wi9_A 11 EFINYIKKSKVVLLEDLAFQMGLR-TQDAINRIQ-DLLTEGTLTGVIDDRGKFIYIT 65 (72)
T ss_dssp HHHHHHHHCSEECHHHHHHHHCSC-HHHHHHHHH-HHHHHSSSCEEECTTCCEEECC
T ss_pred HHHHHHHHcCeeeHHHHHHHhCCC-hHHHHHHHH-HHHHCCCeEEEEeCCCCEEEec
Confidence 456666888999999999999998 777777777 8888999999999999999886
No 12
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=94.22 E-value=0.07 Score=44.66 Aligned_cols=74 Identities=9% Similarity=0.078 Sum_probs=59.8
Q ss_pred hHHHHHHHHHhcCChhhhhhhhCCCCC-----cchHHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHH
Q 027271 60 SKYLDMLRLFAHGTWSDYKNNAGHLPQ-----LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINE 134 (225)
Q Consensus 60 ~~l~~LL~iF~~G~~~d~~~~~~~~~~-----L~~~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~ 134 (225)
...+++-..+..|+|..|.......|. +.+-...++|.-.+-++++.+..||.+++++.|+.+|.++++.++- +
T Consensus 136 ~~al~l~~al~~GnY~kff~l~~~~p~~~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~-~ 214 (229)
T 4b0z_A 136 EWVISLEQNVMEGAFDKVASMIRSCNFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAE-E 214 (229)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHH-H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHH-H
Confidence 346788999999999999875444443 2234467889888888888889999999999999998999999987 6
No 13
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=89.15 E-value=3.2 Score=29.77 Aligned_cols=69 Identities=14% Similarity=0.093 Sum_probs=49.1
Q ss_pred CcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHHHHHHHHH
Q 027271 107 NKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (225)
Q Consensus 107 ~~~isy~~I~~~L-~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~L~~W~~~ 180 (225)
....+|.+|++.+ +++ ...+=..+= .....|+|+.+-+..++.......+++ +. +.-.....+..|...
T Consensus 25 ~~~~~~~eLa~~l~~is-~~tls~~L~-~Le~~GlI~r~~~~~d~r~~~y~LT~~--G~-~l~~~~~~l~~w~~~ 94 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNIT-QKMLTQQLR-ELEADGVINRIVYNQVPPKVEYELSEY--GR-SLEGILDMLXAWGAN 94 (107)
T ss_dssp TCCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--GG-GGHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECcc--HH-HHHHHHHHHHHHHHH
Confidence 3579999999999 997 777777766 788899999999887665444444433 22 233445667777654
No 14
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=86.55 E-value=2.1 Score=29.90 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=41.6
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
.+.|.++.-..++..+++.+||+.|+++ ...|...+- +.-..|+|.-. +...+.-.+
T Consensus 13 ~~IL~~L~~~~pg~~~t~~eLA~~Lgvs-r~tV~~~L~-~Le~~G~I~~~-g~~~~~W~i 69 (81)
T 1qbj_A 13 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKE-AGTPPLWKI 69 (81)
T ss_dssp HHHHHHHHHHCTTCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-SSSSCEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEec-CCCCCeeEE
Confidence 3345555544556789999999999997 899999988 88899998643 444444444
No 15
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.23 E-value=1.7 Score=29.83 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkI 145 (225)
.+.|.++.--.++..+++.+||+.|+++ ...|...+= +....|+|.+.-
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs-~~tV~~~L~-~L~~~G~I~~~g 65 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTP-KKEINRVLY-SLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCC-HHHHHHHHH-HHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEecC
Confidence 3345555544556689999999999997 899999887 888999998864
No 16
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=85.99 E-value=1.4 Score=32.63 Aligned_cols=82 Identities=11% Similarity=0.104 Sum_probs=56.6
Q ss_pred hhhccCCcc-cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC--CCEEEEEeeccCCCCCCc-HHHHHHHHHH
Q 027271 101 LTLAETNKV-LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL--RRCFEVQFAAGRDLRPGQ-LGSMIQTLSN 176 (225)
Q Consensus 101 lsL~~~~~~-isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~--~~~v~V~~~~~R~~~~~q-~~~L~~~L~~ 176 (225)
..|....+. ++..+|++.++++ ...|=..+= .....|+|...-+.. .+..++..+.+ +.+ .+.+...+..
T Consensus 33 ~~L~~~~~~~~t~~eLa~~l~~s-~sTV~r~L~-~L~~~GlV~r~~~~~d~~~~~~~y~~~~----~~~~~~~i~~~~~~ 106 (123)
T 3r0a_A 33 KSFLNEPDRWIDTDALSKSLKLD-VSTVQRSVK-KLHEKEILQRSQQNLDGGGYVYIYKIYS----KNQIRNIIQKIVQS 106 (123)
T ss_dssp HHHHHSTTCCEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEECTTSCEEEEEEECC----HHHHHHHHHHHHHH
T ss_pred HHHHHCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeeCCccCCCcceEEEecCC----HHHHHHHHHHHHHH
Confidence 334445555 9999999999997 888888777 788899999875544 23333333322 222 4457888999
Q ss_pred HHHHHHHHHHHH
Q 027271 177 WLTTSDNLLISI 188 (225)
Q Consensus 177 W~~~v~~~l~~i 188 (225)
|.+.+...++.+
T Consensus 107 ~~~~~~~~l~~~ 118 (123)
T 3r0a_A 107 WADRLGQELKEW 118 (123)
T ss_dssp HHHHHHHTTTTT
T ss_pred HHHHHHHHHHHH
Confidence 998887766544
No 17
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=84.11 E-value=6 Score=28.64 Aligned_cols=79 Identities=10% Similarity=0.194 Sum_probs=49.1
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHH
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L-~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~ 172 (225)
|-|.+-|..|..+...++|.+|++.+ +|+ ...+=.-+= ..-..|+|+-+.+ ..+.+--.-.++ ++-....
T Consensus 27 ~wrl~IL~~L~~g~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~--r~~~y~LT~~G~-----~l~~~l~ 97 (111)
T 3df8_A 27 KYTMLIISVLGNGSTRQNFNDIRSSIPGIS-STILSRRIK-DLIDSGLVERRSG--QITTYALTEKGM-----NVRNSLM 97 (111)
T ss_dssp TTHHHHHHHHTSSSSCBCHHHHHHTSTTCC-HHHHHHHHH-HHHHTTSEEEEES--SSEEEEECHHHH-----HHHHHHH
T ss_pred ccHHHHHHHHhcCCCCCCHHHHHHHccCCC-HHHHHHHHH-HHHHCCCEEEeec--CcEEEEECccHH-----HHHHHHH
Confidence 44554555555444346699999999 997 777766666 7788999999888 222221111111 2334566
Q ss_pred HHHHHHHHH
Q 027271 173 TLSNWLTTS 181 (225)
Q Consensus 173 ~L~~W~~~v 181 (225)
.+..|....
T Consensus 98 ~l~~w~~~~ 106 (111)
T 3df8_A 98 PLLQYISVL 106 (111)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 677787654
No 18
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=83.65 E-value=5.2 Score=29.43 Aligned_cols=41 Identities=7% Similarity=0.034 Sum_probs=34.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 45 ~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R 85 (145)
T 3g3z_A 45 SRTQKHIGEKWSLP-KQTVSGVCK-TLAGQGLIEWQEGEQDRR 85 (145)
T ss_dssp SBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEECCCSSCGG
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCc
Confidence 49999999999997 888888777 889999999887765554
No 19
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=82.88 E-value=7.2 Score=26.88 Aligned_cols=74 Identities=15% Similarity=0.143 Sum_probs=47.8
Q ss_pred hhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC---EEEEEeeccCCCCCCcHHHHHHHHHHHH
Q 027271 102 TLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR---CFEVQFAAGRDLRPGQLGSMIQTLSNWL 178 (225)
Q Consensus 102 sL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~---~v~V~~~~~R~~~~~q~~~L~~~L~~W~ 178 (225)
.+...+..++..+|++.++++ ...|=..+= .....|+|...-+...+ ........ ++-++.+...+..|.
T Consensus 29 ~l~~~~~~~t~~ela~~l~is-~~tv~~~l~-~L~~~g~v~~~~~~~~~~gr~~~~~~l~-----~~~~~~~~~~~~~~~ 101 (109)
T 2d1h_A 29 KMVEIEKPITSEELADIFKLS-KTTVENSLK-KLIELGLVVRTKTEGKKIGRPKYYYSIS-----SNILEKIRNDLLNCA 101 (109)
T ss_dssp HHHHHCSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC-------CCEEEEEC-----TTHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeccccCCCCCCCeeeecC-----HHHHHHHHHHHHHHH
Confidence 333334579999999999997 888888777 78889999987665432 12222222 244566677777776
Q ss_pred HHHH
Q 027271 179 TTSD 182 (225)
Q Consensus 179 ~~v~ 182 (225)
+.+.
T Consensus 102 ~~~~ 105 (109)
T 2d1h_A 102 KRME 105 (109)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6544
No 20
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=82.37 E-value=6 Score=27.12 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=31.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..+++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 29 ~~~~~~ela~~l~is-~~tvs~~l~-~L~~~gli~~~~~~ 66 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLT-PGNLDSHIR-VLERNGLVKTYKVI 66 (100)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEEC
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 479999999999997 888887766 78889999977644
No 21
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=82.23 E-value=2.7 Score=32.98 Aligned_cols=59 Identities=12% Similarity=0.133 Sum_probs=44.0
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
=+|.|..+....+++.+|-++||+.+++| ..-|+..+- ..-.+|+|... -..+|-+...
T Consensus 29 Alr~L~~LA~~~~~~~~s~~eIA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 87 (159)
T 3lwf_A 29 GLTITLELAKRIGDGPISLRSIAQDKNLS-EHYLEQLIG-PLRNAGIVKSI-RGAHGGYVLN 87 (159)
T ss_dssp HHHHHHHHHHTTTSCCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE-CSTTCEEEEC
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCeEEEe-cCCCCceEec
Confidence 45555555544456679999999999998 999999988 88999999876 3344544443
No 22
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=82.01 E-value=2.1 Score=32.76 Aligned_cols=58 Identities=16% Similarity=0.245 Sum_probs=42.3
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
+|.|..+....+++.++-++||+.+++| ..-|+..+- ..-..|+|... -..+|-+...
T Consensus 14 l~~L~~La~~~~~~~~s~~~IA~~~~i~-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~La 71 (143)
T 3t8r_A 14 LTLMISLAKKEGQGCISLKSIAEENNLS-DLYLEQLVG-PLRNAGLIRSV-RGAKGGYQLR 71 (143)
T ss_dssp HHHHHHHHTTTTSCCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC-SSSSSEEEES
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCEEEec-CCCCCCeeec
Confidence 4444444443445679999999999998 999999988 88899998864 4445555543
No 23
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=81.88 E-value=9.2 Score=27.46 Aligned_cols=68 Identities=24% Similarity=0.135 Sum_probs=46.3
Q ss_pred cccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHHHHHHHHH
Q 027271 108 KVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLTT 180 (225)
Q Consensus 108 ~~isy~~I~~~L-~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~L~~W~~~ 180 (225)
..+++.+|++.+ +++ ...|=..|= .....|+|...-|..++.......++.- .+.-.....+..|...
T Consensus 34 ~~~~~~eLa~~l~~is-~~tvs~~L~-~Le~~GlI~r~~~~~d~r~~~~~LT~~G---~~~~~~~~~l~~w~~~ 102 (112)
T 1z7u_A 34 GTKRNGELMRALDGIT-QRVLTDRLR-EMEKDGLVHRESFNELPPRVEYTLTPEG---YALYDALSSLCHWGET 102 (112)
T ss_dssp SCBCHHHHHHHSTTCC-HHHHHHHHH-HHHHHTSEEEEEECCSSCEEEEEECHHH---HHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeEEEEECHhH---HHHHHHHHHHHHHHHH
Confidence 468999999999 997 888887777 8889999999998766554444433221 1122233455666554
No 24
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=81.73 E-value=1.3 Score=33.15 Aligned_cols=37 Identities=16% Similarity=0.341 Sum_probs=30.1
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
.+..+++.+|++.++++ ...|=..+= .....|+|.+.
T Consensus 15 ~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 51 (141)
T 1i1g_A 15 KDARTPFTEIAKKLGIS-ETAVRKRVK-ALEEKGIIEGY 51 (141)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSSCCC
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEecc
Confidence 34468999999999997 888877766 78889999765
No 25
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=81.69 E-value=7.3 Score=28.45 Aligned_cols=44 Identities=16% Similarity=-0.008 Sum_probs=36.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v 152 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 48 ~~~~~~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~r~ 91 (146)
T 2gxg_A 48 DGPKTMAYLANRYFVT-QSAITASVD-KLEEMGLVVRVRDREDRRK 91 (146)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTTC
T ss_pred cCCcCHHHHHHHhCCC-chhHHHHHH-HHHHCCCEEeecCCCCCce
Confidence 5679999999999997 888887777 8888999998887655443
No 26
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=81.24 E-value=5.1 Score=29.02 Aligned_cols=47 Identities=17% Similarity=0.112 Sum_probs=38.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
+..++..+|++.++++ ...|=..+= .....|+|.-.-|..++.....
T Consensus 41 ~~~~~~~ela~~l~~s-~~tvs~~l~-~L~~~glv~~~~~~~d~R~~~~ 87 (138)
T 3bpv_A 41 EPGIKQDELATFFHVD-KGTIARTLR-RLEESGFIEREQDPENRRRYIL 87 (138)
T ss_dssp STTCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEE
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCceeEEe
Confidence 3578999999999997 888888777 8899999999888766654443
No 27
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=81.10 E-value=9.3 Score=26.09 Aligned_cols=41 Identities=12% Similarity=0.116 Sum_probs=33.9
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..+..++..+|++.++++ ...|-..+= .....|+|...-|.
T Consensus 34 ~~~~~~s~~ela~~l~is-~~tvs~~l~-~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLS-ASATSQHLA-RMRDEGLIDSQRDA 74 (99)
T ss_dssp TTCCSEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HhCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecC
Confidence 445679999999999997 888888777 78889999887653
No 28
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=80.41 E-value=5.5 Score=29.16 Aligned_cols=43 Identities=9% Similarity=0.057 Sum_probs=35.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v 152 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 42 ~~~t~~~la~~l~~s-~~~vs~~l~-~Le~~gli~r~~~~~d~R~ 84 (144)
T 1lj9_A 42 PGIIQEKIAELIKVD-RTTAARAIK-RLEEQGFIYRQEDASNKKI 84 (144)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTTC
T ss_pred cCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCce
Confidence 478999999999997 888887766 8889999999888765443
No 29
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=79.36 E-value=6.9 Score=29.61 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=42.7
Q ss_pred hhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeecc
Q 027271 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAG 159 (225)
Q Consensus 101 lsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~ 159 (225)
..|...+...+-.+|++.++++ ...|=..|= .....|+|.=.-|+.++....-..++
T Consensus 38 ~~L~~~~~~~~~~eLa~~l~~~-~~tvs~~v~-~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 38 YNINRLPPEQSQIQLAKAIGIE-QPSLVRTLD-QLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp HHHHHSCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred HHHHHcCCCCcHHHHHHHHCcC-HHHHHHHHH-HHHhCCCeEeecCCCCCcchhhhcCH
Confidence 3344444556778999999997 888877766 88999999999998877655544443
No 30
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=79.32 E-value=5.3 Score=29.04 Aligned_cols=48 Identities=15% Similarity=0.144 Sum_probs=36.3
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
.++.|.++. .+..+..+|++.++++ ...|=.-+= .....|+|..+-+.
T Consensus 20 R~~Il~~L~----~~~~~~~eLa~~l~is-~~tvs~hL~-~L~~~GlV~~~~~g 67 (118)
T 3f6o_A 20 RRAVLGRLS----RGPATVSELAKPFDMA-LPSFMKHIH-FLEDSGWIRTHKQG 67 (118)
T ss_dssp HHHHHHHHH----TCCEEHHHHHTTCCSC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred HHHHHHHHH----hCCCCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEEecC
Confidence 344445443 3568999999999997 888877666 67889999988774
No 31
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=79.06 E-value=7 Score=27.96 Aligned_cols=62 Identities=5% Similarity=0.011 Sum_probs=44.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHHHHHHHH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLT 179 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~L~~W~~ 179 (225)
+.+++.+|++.++++ ...|-..+= .....|+|..+-+.. .++.. ++.+.+..+...|..|..
T Consensus 37 ~~~s~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~gr--~~~y~------l~~~~~~~l~~~l~~~~~ 98 (108)
T 2kko_A 37 GERAVEAIATATGMN-LTTASANLQ-ALKSGGLVEARREGT--RQYYR------IAGEDVARLFALVQVVAD 98 (108)
T ss_dssp CCEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEEEEETT--EEEEE------ESCHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC--EEEEE------EChHHHHHHHHHHHHHhh
Confidence 568999999999997 888887776 788899999876432 22211 123446777777777764
No 32
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=79.03 E-value=3.7 Score=30.29 Aligned_cols=48 Identities=13% Similarity=0.167 Sum_probs=37.0
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
++.|..+.-..+++.++-.+|++.+++| ...|...+- ..-..|+|...
T Consensus 12 l~iL~~la~~~~~~~~s~~ela~~~~i~-~~~v~~il~-~L~~~Glv~~~ 59 (129)
T 2y75_A 12 LTIMIELAKKHGEGPTSLKSIAQTNNLS-EHYLEQLVS-PLRNAGLVKSI 59 (129)
T ss_dssp HHHHHHHHHTTTSCCBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCcCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEec
Confidence 4444444333346789999999999998 999999888 88889998754
No 33
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=78.24 E-value=9.1 Score=27.20 Aligned_cols=68 Identities=13% Similarity=0.079 Sum_probs=45.9
Q ss_pred CcccChHHHHHHcC-CCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHHHHHHHH
Q 027271 107 NKVLPYDELMEELD-VTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQTLSNWLT 179 (225)
Q Consensus 107 ~~~isy~~I~~~L~-i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~L~~W~~ 179 (225)
.+..+|.+|++.++ ++ ...+=..+= .....|+|+.+-|..++.......++. +.+ .-.....+..|..
T Consensus 36 ~~~~~~~eL~~~l~gis-~~~ls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~--G~~-l~~~l~~l~~w~~ 104 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGIS-EKMLIDELK-FLCGKGLIKKKQYPEVPPRVEYSLTPL--GEK-VLPIIDEIAKFGM 104 (107)
T ss_dssp TSCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECHH--HHT-THHHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCC-HHHHHHHHH-HHHHCCCEEEeecCCCCCeeEEEECcc--HHH-HHHHHHHHHHHHH
Confidence 35799999999995 97 778877766 788899999998876655444333322 111 2233456677764
No 34
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=78.18 E-value=9.9 Score=26.81 Aligned_cols=37 Identities=16% Similarity=0.105 Sum_probs=31.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkID 146 (225)
+.++..+|++.++++ ...|-..+= .....|+|...-+
T Consensus 33 ~~~~~~ela~~l~is-~~tv~~~l~-~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVS-RQAIAKHLN-ALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeEEec
Confidence 458999999999997 888888777 7888999987765
No 35
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=77.55 E-value=16 Score=27.25 Aligned_cols=80 Identities=13% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHH
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQ 172 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L-~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~ 172 (225)
+.+.+.|..|. ....+|.+|++.+ +|+ ...+=..|= .....|+|.-+.|...+.......++.- .+.-....
T Consensus 35 ~w~l~IL~~L~--~g~~~~~eLa~~l~gis-~~tls~~L~-~Le~~GlV~r~~~~~d~r~~~y~LT~~G---~~l~~~l~ 107 (131)
T 1yyv_A 35 RWGVLILVALR--DGTHRFSDLRRXMGGVS-EXMLAQSLQ-ALEQDGFLNRVSYPVVPPHVEYSLTPLG---EQVSDXVA 107 (131)
T ss_dssp HHHHHHHHHGG--GCCEEHHHHHHHSTTCC-HHHHHHHHH-HHHHHTCEEEEEECSSSCEEEEEECHHH---HHHHHHHH
T ss_pred CcHHHHHHHHH--cCCCCHHHHHHHhccCC-HHHHHHHHH-HHHHCCcEEEEecCCCCCeEEEEECccH---HHHHHHHH
Confidence 44444444454 3578999999999 797 778777776 7888999999998766554444443321 11223345
Q ss_pred HHHHHHHH
Q 027271 173 TLSNWLTT 180 (225)
Q Consensus 173 ~L~~W~~~ 180 (225)
.+..|...
T Consensus 108 ~l~~w~~~ 115 (131)
T 1yyv_A 108 ALADWIEL 115 (131)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55666543
No 36
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=77.36 E-value=20 Score=27.08 Aligned_cols=73 Identities=18% Similarity=0.122 Sum_probs=52.8
Q ss_pred HHHHHhhhhccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCEEEEEeeccCCCCCCcHHHHH
Q 027271 95 LKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRCFEVQFAAGRDLRPGQLGSMI 171 (225)
Q Consensus 95 lr~LtLlsL~~~~-~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g--kIDq~~~~v~V~~~~~R~~~~~q~~~L~ 171 (225)
+-.+.|......+ .-.|.++||+.++++ ..+|...+= ..+..|+|.- +.|..++....-.. ..|.
T Consensus 36 ~lLl~L~~~~~~g~~~ps~~~LA~~~~~s-~~~v~~~L~-~L~~KGlI~i~~~~d~~g~~~~~ydL----------~pL~ 103 (135)
T 2v79_A 36 ILLLKIKMHLEKGSYFPTPNQLQEGMSIS-VEECTNRLR-MFIQKGFLFIEECEDQNGIKFEKYSL----------QPLW 103 (135)
T ss_dssp HHHHHHHHHHTTTCCSCCHHHHHTTSSSC-HHHHHHHHH-HHHHHTSCEEEEEECTTCCEEEEEEC----------HHHH
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEecCCCceEEEeeH----------HHHH
Confidence 4555666655433 568999999999997 999999988 9999999997 55665554444333 3477
Q ss_pred HHHHHHHH
Q 027271 172 QTLSNWLT 179 (225)
Q Consensus 172 ~~L~~W~~ 179 (225)
++|..+..
T Consensus 104 ekL~~~~~ 111 (135)
T 2v79_A 104 GKLYEYIQ 111 (135)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 37
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=76.87 E-value=4.1 Score=29.85 Aligned_cols=47 Identities=15% Similarity=0.005 Sum_probs=38.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~ 156 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++......
T Consensus 46 ~~~~~~~la~~l~~s-~~tvs~~l~-~L~~~glv~r~~~~~d~r~~~~~ 92 (145)
T 2a61_A 46 GPKRPGELSVLLGVA-KSTVTGLVK-RLEADGYLTRTPDPADRRAYFLV 92 (145)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCCceEEEE
Confidence 469999999999997 888888766 88899999999887666554433
No 38
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.71 E-value=8.7 Score=27.95 Aligned_cols=46 Identities=20% Similarity=0.097 Sum_probs=37.4
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 49 ~~~~~t~~~la~~l~~s-~~~vs~~l~-~L~~~glv~r~~~~~d~R~~ 94 (146)
T 2fbh_A 49 HRDSPTQRELAQSVGVE-GPTLARLLD-GLESQGLVRRLAVAEDRRAK 94 (146)
T ss_dssp CSSCCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCBTTBCSC
T ss_pred cCCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCeeecCCCcccCee
Confidence 45679999999999997 888887776 88899999988877555433
No 39
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=76.11 E-value=16 Score=24.95 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=33.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..++..+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 33 ~~~s~~ela~~l~is-~~tv~~~l~-~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 33 GGMRVSEIARELDLS-ARFVRDRLK-VLLKRGFVRREIVE 70 (109)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEEeec
Confidence 459999999999997 888888877 88999999988776
No 40
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=75.07 E-value=3.9 Score=31.02 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=36.5
Q ss_pred hhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 027271 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (225)
Q Consensus 100 LlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g---kIDq~ 148 (225)
|+.+...+..+|+.+|++.+|++ ...|-..+= .....|+|.+ .+|..
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVS-PETIHVRVE-KMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHcCCcceEEEecCHH
Confidence 33333444679999999999997 888888877 8888999986 56764
No 41
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=74.97 E-value=3.5 Score=31.68 Aligned_cols=42 Identities=26% Similarity=0.175 Sum_probs=33.8
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g---kIDq~ 148 (225)
..+..+|+.+|++.+|++ ...|-..+- .....|+|.+ .+|..
T Consensus 20 ~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 20 QENGRLTNVELSERVALS-PSPCLRRLK-QLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEeeecccCChH
Confidence 334569999999999997 888888887 8899999986 45543
No 42
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=74.96 E-value=3.4 Score=28.56 Aligned_cols=43 Identities=12% Similarity=0.115 Sum_probs=35.4
Q ss_pred HHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 027271 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (225)
Q Consensus 98 LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~ 142 (225)
..|+.+....+.++.++|++.++++ ...|..-+- .....|+|.
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l~VS-~~TIRrdL~-~Le~~G~l~ 47 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTLNTP-QPMINAMLQ-QLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEE
Confidence 3456666777899999999999997 888988877 888888774
No 43
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=74.82 E-value=4.6 Score=30.88 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=37.5
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkI 145 (225)
+|.|..+.. .+++.++-.+||+.+++| ..-|+..+- ..-..|+|...=
T Consensus 17 l~~L~~La~-~~~~~~~~~~iA~~~~i~-~~~l~kil~-~L~~~Glv~s~r 64 (149)
T 1ylf_A 17 VHILSILKN-NPSSLCTSDYMAESVNTN-PVVIRKIMS-YLKQAGFVYVNR 64 (149)
T ss_dssp HHHHHHHHH-SCGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC-
T ss_pred HHHHHHHHh-CCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEcc
Confidence 444444443 245689999999999998 999999988 899999998643
No 44
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=74.75 E-value=3 Score=31.42 Aligned_cols=46 Identities=15% Similarity=0.213 Sum_probs=35.7
Q ss_pred hhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 027271 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (225)
Q Consensus 101 lsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk---IDq~ 148 (225)
+.+...+..+|+.+|++.++++ ...|-..+= .....|+|++. +|..
T Consensus 11 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 11 IEELKKDSRLSMRELGRKIKLS-PPSVTERVR-QLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEecccChh
Confidence 3333444569999999999997 888988877 88889999864 5654
No 45
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=74.48 E-value=5.9 Score=29.47 Aligned_cols=45 Identities=16% Similarity=0.172 Sum_probs=31.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 54 ~~~~~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~~~ 98 (149)
T 4hbl_A 54 NPQTLNSIGRHLDLS-SNTLTPMLK-RLEQSGWVKRERQQSDKRQLI 98 (149)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEC---------CE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeCCCCCCcceee
Confidence 578999999999997 888888776 889999999888776655433
No 46
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.25 E-value=7.9 Score=32.99 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=65.1
Q ss_pred hhhcCchh-hhccCCC-chHHHHHHHHHhcCChhhhhhh--hCCCCC-----cchHHHHHHHHHHhhhhccCCcccChHH
Q 027271 44 EILAVPNI-AEFEGTE-NSKYLDMLRLFAHGTWSDYKNN--AGHLPQ-----LVPDQVLKLKQLTVLTLAETNKVLPYDE 114 (225)
Q Consensus 44 eLl~~p~v-~~L~~~~-~~~l~~LL~iF~~G~~~d~~~~--~~~~~~-----L~~~~~~Klr~LtLlsL~~~~~~isy~~ 114 (225)
+|-.+|.. ..+++++ -..-+++-..+..|+|..|-+. .+..|. +.+-...++|.-.+-++++.++.+|.++
T Consensus 125 ~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~ 204 (274)
T 4b4t_T 125 ELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGSQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSN 204 (274)
T ss_dssp HHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHH
T ss_pred HHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHH
Confidence 44445542 2344433 2345678899999999988653 223333 2244578899988889999999999999
Q ss_pred HHHHcCCCChHHHHHHHHHH
Q 027271 115 LMEELDVTNVRELEDFLINE 134 (225)
Q Consensus 115 I~~~L~i~~~~evE~lvI~~ 134 (225)
+++-|+.+|.+++..++- +
T Consensus 205 ~~~~L~F~s~~e~~~F~~-~ 223 (274)
T 4b4t_T 205 IKALLFFNNEKETEKFAL-E 223 (274)
T ss_dssp HHHHHTCCSHHHHHHHHH-H
T ss_pred HHHHhCCCCHHHHHHHHH-H
Confidence 999999999999999877 5
No 47
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=74.24 E-value=5.1 Score=28.18 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=35.1
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
+.+.|.++. .++ +|+.+||+.|+|+ ...|-..+- +.-..|+|.-
T Consensus 19 ~~~IL~lL~--~~g--~sa~eLAk~LgiS-k~aVr~~L~-~Le~eG~I~~ 62 (82)
T 1oyi_A 19 VCEAIKTIG--IEG--ATAAQLTRQLNME-KREVNKALY-DLQRSAMVYS 62 (82)
T ss_dssp HHHHHHHHS--SST--EEHHHHHHHSSSC-HHHHHHHHH-HHHHHTSSEE
T ss_pred HHHHHHHHH--HcC--CCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 555566655 333 9999999999997 889988888 7778999876
No 48
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=74.23 E-value=7.5 Score=29.18 Aligned_cols=47 Identities=17% Similarity=0.331 Sum_probs=36.7
Q ss_pred hhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 027271 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (225)
Q Consensus 100 LlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g---kIDq~ 148 (225)
|+.+...+..+++.+|++.+|++ ...|-..+= .....|+|++ .+|..
T Consensus 8 il~~L~~~~~~~~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 8 ILKILQYNAKYSLDEIAREIRIP-KATLSYRIK-KLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHTTCTTSCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEEeecCHH
Confidence 34444555679999999999997 888887777 8888999987 56653
No 49
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=73.98 E-value=7.1 Score=29.44 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=39.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.......
T Consensus 59 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 106 (162)
T 3k0l_A 59 PNLSNAKLAERSFIK-PQSANKILQ-DLLANGWIEKAPDPTHGRRILVTV 106 (162)
T ss_dssp TTCCHHHHHHHHTSC-GGGHHHHHH-HHHHTTSEEEEECCSSSCCEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCeEecCCCCcCCeeEeEE
Confidence 479999999999997 888887776 888999999999887766554443
No 50
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=73.70 E-value=3.6 Score=31.77 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=37.3
Q ss_pred HhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 027271 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (225)
Q Consensus 99 tLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g---kIDq~ 148 (225)
.|+.+...+..+||.+||+.+|++ ...|-.-+= +....|+|++ .+|..
T Consensus 7 ~il~~L~~~~~~s~~~la~~lg~s-~~tv~~rl~-~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 7 KILRILQEDSTLAVADLAKKVGLS-TTPCWRRIQ-KMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHTTCSCSCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeeeceeeeCHH
Confidence 345555666778999999999997 888887777 8888999885 56653
No 51
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=72.81 E-value=12 Score=28.51 Aligned_cols=49 Identities=10% Similarity=-0.046 Sum_probs=33.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.......
T Consensus 66 ~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~L 114 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIE-QPSLVRTLD-QLEDKGLISRQTCASDRRAKRIKL 114 (166)
T ss_dssp CSSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEC--------CEEEE
T ss_pred CCCCCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCEEeeCCCCCCCeeEEEE
Confidence 4469999999999997 888887776 888999999988776665544433
No 52
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=72.40 E-value=3.7 Score=31.03 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=35.5
Q ss_pred hhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE---ecCC
Q 027271 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK---LDQL 148 (225)
Q Consensus 101 lsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk---IDq~ 148 (225)
+.+...+..+|+.+|++.+|++ ...|-..+= .....|+|.+. +|..
T Consensus 15 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 15 VKILSENSRLTYRELADILNTT-RQRIARRID-KLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHTTSC-HHHHHHHHH-HHHHHTSEEEEEEEECTG
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEEecCChH
Confidence 3333445679999999999997 888888877 88889999864 5553
No 53
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=71.73 E-value=7.4 Score=29.17 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=36.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
..++..+|++.++++ ...|=..|= .....|+|.-+-|..++.......
T Consensus 63 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~L 110 (159)
T 3s2w_A 63 DGINQESLSDYLKID-KGTTARAIQ-KLVDEGYVFRQRDEKDRRSYRVFL 110 (159)
T ss_dssp CSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC---CCEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCeeEEEE
Confidence 568999999999997 888888776 889999999998887665444333
No 54
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=71.68 E-value=15 Score=27.72 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=35.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~ 150 (225)
+..+|.+|++.++|+ ...+=..+= .....|+|+.+-++..+
T Consensus 36 g~~~~~eLa~~lgis-~~tls~~L~-~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLA-KNILAARLR-NLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TCCSHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEEEECSSSS
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEEecCCCC
Confidence 478999999999997 777777666 78889999999987766
No 55
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=71.48 E-value=3.2 Score=32.61 Aligned_cols=41 Identities=10% Similarity=0.243 Sum_probs=33.2
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecC
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQ 147 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g---kIDq 147 (225)
..+..+|+.+|++.++++ ...|-..+= +....|+|++ .+|.
T Consensus 37 ~~~~~~s~~eLA~~lglS-~~tv~~rl~-~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 37 QNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSSCCCCCCCCG
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEeeeEEECH
Confidence 334579999999999997 888888777 8888999976 3554
No 56
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=71.41 E-value=18 Score=27.69 Aligned_cols=107 Identities=8% Similarity=0.089 Sum_probs=60.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE-EEecCCCCEEEEE----e----eccCCCCCCcHHHHHHHHHHHH-
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVR-GKLDQLRRCFEVQ----F----AAGRDLRPGQLGSMIQTLSNWL- 178 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~-gkIDq~~~~v~V~----~----~~~R~~~~~q~~~L~~~L~~W~- 178 (225)
.++..++|+.+||+ ...+-.| - + .||+. ..-+..+...+=. + ...|.++.. ++.++.-+..|.
T Consensus 16 ~~~I~evA~~~gvs-~~tLR~Y-e-~---~Gll~p~~r~~~g~R~Y~~~dl~~l~~I~~lr~~G~s-L~eIk~~l~~~~~ 88 (148)
T 3gpv_A 16 YYTIGQVAKMQHLT-ISQIRYY-D-K---QGLFPFLQRNEKGDRIFNEEALKYLEMILCLKNTGMP-IQKIKQFIDWSME 88 (148)
T ss_dssp CBCHHHHHHHTTCC-HHHHHHH-H-H---TTCCTTCEECTTCCEEBCHHHHHHHHHHHHHHTTTCC-HHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHCcC-HHHHHHH-H-H---CCCCCCCcCCCCCCeecCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHhhhc
Confidence 58899999999997 8888887 2 3 68885 5555433322211 0 011121111 222333333332
Q ss_pred --HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 027271 179 --TTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSH 222 (225)
Q Consensus 179 --~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
..+......++++...+..+.+...+..+.+..+++..+..++.
T Consensus 89 ~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~ 134 (148)
T 3gpv_A 89 GDSTILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISS 134 (148)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 24556666777777777777777777777777777766665544
No 57
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.86 E-value=6.1 Score=28.56 Aligned_cols=45 Identities=9% Similarity=0.118 Sum_probs=36.1
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
+..++..+|++.++++ ...|-..|= .....|+|.-.-|..++...
T Consensus 45 ~~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~r~~ 89 (139)
T 3bja_A 45 SGKVSMSKLIENMGCV-PSNMTTMIQ-RMKRDGYVMTEKNPNDQRET 89 (139)
T ss_dssp SCSEEHHHHHHHCSSC-CTTHHHHHH-HHHHTTSEEEEECSSCTTCE
T ss_pred cCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCeeeccCCCCCcee
Confidence 3469999999999997 788887766 88889999988777554433
No 58
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=70.49 E-value=7.4 Score=30.35 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=40.5
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
+|.|..+... ++..+|-++||+.++|+ ..-|+..+- ..-..|+|+.. -..+|-...
T Consensus 15 lr~l~~La~~-~~~~~s~~~IA~~~~is-~~~l~kil~-~L~~aGlv~s~-rG~~GGy~L 70 (162)
T 3k69_A 15 VHSILYLDAH-RDSKVASRELAQSLHLN-PVMIRNILS-VLHKHGYLTGT-VGKNGGYQL 70 (162)
T ss_dssp HHHHHHHHTT-TTSCBCHHHHHHHHTSC-GGGTHHHHH-HHHHTTSSEEE-CSTTCEEEC
T ss_pred HHHHHHHHhC-CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEee-cCCCCCeEe
Confidence 4444444432 35679999999999998 999999888 88899999765 334444443
No 59
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=70.36 E-value=7.9 Score=28.75 Aligned_cols=44 Identities=11% Similarity=0.066 Sum_probs=32.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 54 ~~~~~t~~ela~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R 97 (155)
T 3cdh_A 54 DNDAMMITRLAKLSLME-QSRMTRIVD-QMDARGLVTRVADAKDKR 97 (155)
T ss_dssp SCSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC------
T ss_pred HCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCcCC
Confidence 34579999999999997 888888777 888999999877665544
No 60
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=70.03 E-value=32 Score=25.78 Aligned_cols=79 Identities=15% Similarity=0.106 Sum_probs=52.3
Q ss_pred HHHHHhhhhccCCcccChHHHHHHc-CCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCCcHHHHHHH
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEEL-DVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPGQLGSMIQT 173 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L-~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~q~~~L~~~ 173 (225)
-+.+.|..|. .+..+|.+|++.+ +|+ ...+=..+= +.-..|||.-+.+...........++. + .+.......
T Consensus 27 W~l~IL~~L~--~g~~rf~eL~~~l~gIs-~~~Ls~~L~-~Le~~GLV~R~~~~~d~r~v~y~LT~~--G-~~l~~~l~~ 99 (131)
T 4a5n_A 27 WKGILFYHMI--DGKKRFNEFRRICPSIT-QRMLTLQLR-ELEADGIVHREVYHQVPPKVEYSLTEF--G-RTLEPIVLQ 99 (131)
T ss_dssp SHHHHHHHHT--TSCBCHHHHHHHCTTSC-HHHHHHHHH-HHHHTTSEEEEEECSSSCEEEEEECTT--G-GGGHHHHHH
T ss_pred CHHHHHHHHh--cCCcCHHHHHHHhcccC-HHHHHHHHH-HHHHCCCEEEEecCCCCCeEEEEECHh--H-HHHHHHHHH
Confidence 3444444554 4579999999999 997 777777666 788899999888876544333333322 1 123445677
Q ss_pred HHHHHHH
Q 027271 174 LSNWLTT 180 (225)
Q Consensus 174 L~~W~~~ 180 (225)
|..|..+
T Consensus 100 l~~W~~~ 106 (131)
T 4a5n_A 100 MKEWGES 106 (131)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888754
No 61
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=69.96 E-value=8.9 Score=28.16 Aligned_cols=45 Identities=18% Similarity=0.144 Sum_probs=35.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 55 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~d~R~~~ 99 (150)
T 2rdp_A 55 GDLTVGELSNKMYLA-CSTTTDLVD-RMERNGLVARVRDEHDRRVVR 99 (150)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC---CEE
T ss_pred CCCCHHHHHHHHCCC-chhHHHHHH-HHHHCCCeeecCCCCCcceeE
Confidence 469999999999997 888888776 888899999988876655443
No 62
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=69.75 E-value=7.3 Score=28.87 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=31.2
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE--ecCCCCEEE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK--LDQLRRCFE 153 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk--IDq~~~~v~ 153 (225)
.+..++..+|++.++++ ...|=..|= .....|+|.-. -|+.++...
T Consensus 48 ~~~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~~~D~R~~ 95 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVN-KAAVSRRVK-KLLNAELVKLEKPDSNTDQRLK 95 (151)
T ss_dssp HHSCBCHHHHHHHHCSC-SSHHHHHHH-HHHHTTSEEC-----------C
T ss_pred HcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCCCee
Confidence 34679999999999997 778887776 88899999973 366555443
No 63
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=69.54 E-value=11 Score=27.90 Aligned_cols=42 Identities=19% Similarity=0.190 Sum_probs=35.1
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v 152 (225)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 58 ~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 99 (154)
T 2eth_A 58 PKKMKEIAEFLSTT-KSNVTNVVD-SLEKRGLVVREMDPVDRRT 99 (154)
T ss_dssp CBCHHHHHHHTTSC-HHHHHHHHH-HHHHTTSEEEEECTTTSSC
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCcce
Confidence 69999999999997 888887766 8888999999887655443
No 64
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=69.33 E-value=3.7 Score=28.36 Aligned_cols=35 Identities=6% Similarity=0.206 Sum_probs=29.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
+..+|..+|+++++++ ...|..-+- ..-..|+|.=
T Consensus 22 g~~psv~EIa~~lgvS-~~TVrr~L~-~Le~kG~I~R 56 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLS-IYQVRLYLE-QLHDVGVLEK 56 (77)
T ss_dssp TSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 4789999999999995 888988888 7888888854
No 65
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=69.13 E-value=6 Score=29.13 Aligned_cols=43 Identities=2% Similarity=-0.098 Sum_probs=30.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v 152 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 53 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~ 95 (148)
T 3nrv_A 53 SDCSVQKISDILGLD-KAAVSRTVK-KLEEKKYIEVNGHSEDKRT 95 (148)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC---------
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeecCCCCcce
Confidence 489999999999997 888887776 8888999998877665543
No 66
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=68.82 E-value=13 Score=26.97 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=37.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~ 156 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++......
T Consensus 46 ~~~t~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~D~R~~~~~ 92 (139)
T 3eco_A 46 DGLTQNDIAKALQRT-GPTVSNLLR-NLERKKLIYRYVDAQDTRRKNIG 92 (139)
T ss_dssp TCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECCC--CCEEEE
T ss_pred CCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCCCCCCeeeeE
Confidence 579999999999997 888888776 88899999998887766544433
No 67
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=68.77 E-value=15 Score=25.30 Aligned_cols=39 Identities=21% Similarity=0.252 Sum_probs=32.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~ 148 (225)
+..++.+|++.++++ ...|-.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (98)
T 3jth_A 35 QELSVGELCAKLQLS-QSALSQHLA-WLRRDGLVTTRKEAQ 73 (98)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTT
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 689999999999997 888877766 778899999875543
No 68
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=68.69 E-value=3.9 Score=29.04 Aligned_cols=44 Identities=14% Similarity=0.076 Sum_probs=36.5
Q ss_pred HhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 99 tLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
.|+.+....+.++..+|++.++++ ...|...+- .....|+|.=.
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS-~~TIRrDL~-~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTP-QPLIDAMLE-RMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCC-HHHHHHHHH-HHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 455666677899999999999997 889998888 88888987654
No 69
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=68.52 E-value=3.9 Score=31.02 Aligned_cols=42 Identities=7% Similarity=0.206 Sum_probs=32.8
Q ss_pred hhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 101 LTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 101 lsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
+.+...+..+|+.+|++.+|++ ...|-..+= .....|+|.+.
T Consensus 13 l~~L~~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (151)
T 2cyy_A 13 IKILQNDGKAPLREISKITGLA-ESTIHERIR-KLRESGVIKKF 54 (151)
T ss_dssp HHHHHHCTTCCHHHHHHHHCSC-HHHHHHHHH-HHHHHTSSCCC
T ss_pred HHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 3333344579999999999997 888888777 88889999763
No 70
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=68.37 E-value=30 Score=24.86 Aligned_cols=56 Identities=23% Similarity=0.228 Sum_probs=40.6
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC-EEEE
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR-CFEV 154 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~-~v~V 154 (225)
.+.|.++.+.. ..++..+|++.++++ ...|=..+= .....|+|.-.-|+.++ .+++
T Consensus 29 ~~il~~L~~~~--~~~t~~ela~~l~~~-~stvs~~l~-~L~~~G~v~r~~~~~d~r~~~~ 85 (152)
T 1ku9_A 29 GAVYAILYLSD--KPLTISDIMEELKIS-KGNVSMSLK-KLEELGFVRKVWIKGERKNYYE 85 (152)
T ss_dssp HHHHHHHHHCS--SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCTTCSSCEEE
T ss_pred HHHHHHHHHcC--CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCCceEEEe
Confidence 34445553332 469999999999997 888877766 78889999998877554 3344
No 71
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=67.63 E-value=8.8 Score=29.08 Aligned_cols=34 Identities=3% Similarity=0.074 Sum_probs=30.5
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 027271 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (225)
Q Consensus 111 sy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkID 146 (225)
+-++||+.++|| ..-++.++- ..-..|+|...=.
T Consensus 25 s~~~IA~~~~i~-~~~l~kIl~-~L~~aGlv~s~rG 58 (145)
T 1xd7_A 25 SSEIIADSVNTN-PVVVRRMIS-LLKKADILTSRAG 58 (145)
T ss_dssp CHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECCSS
T ss_pred CHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEeecC
Confidence 999999999998 999999998 8999999976543
No 72
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=67.62 E-value=46 Score=26.67 Aligned_cols=38 Identities=18% Similarity=0.275 Sum_probs=32.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
+..++.+|++.++++ ...|=..+= .....|+|...-+.
T Consensus 27 ~~~s~~eLa~~l~is-~stvs~hLk-~Le~~GLV~~~~~~ 64 (202)
T 2p4w_A 27 RPYFVSELSRELGVG-QKAVLEHLR-ILEEAGLIESRVEK 64 (202)
T ss_dssp SCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEeec
Confidence 468999999999997 788877666 78889999998874
No 73
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=67.53 E-value=14 Score=24.82 Aligned_cols=35 Identities=23% Similarity=0.190 Sum_probs=30.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
..++..+|++.++++ ...|-..+- .....|+|...
T Consensus 13 ~~~s~~eLa~~lgvs-~~tv~r~L~-~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVT-DYQARYYLL-LLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSC-HHHHHHHHH-HHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 569999999999997 888988877 78889999854
No 74
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=67.01 E-value=10 Score=27.98 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=35.7
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 49 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 91 (155)
T 1s3j_A 49 HGSLKVSEIAERMEVK-PSAVTLMAD-RLEQKNLIARTHNTKDRR 91 (155)
T ss_dssp HSEEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCTT
T ss_pred cCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeecCCCCCCc
Confidence 3469999999999997 888888777 888999999888775544
No 75
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=65.48 E-value=26 Score=25.09 Aligned_cols=46 Identities=13% Similarity=-0.005 Sum_probs=37.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.....
T Consensus 49 ~~~t~~ela~~l~~s-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~~~ 94 (142)
T 2fbi_A 49 GEMESYQLANQACIL-RPSMTGVLA-RLERDGIVRRWKAPKDQRRVYV 94 (142)
T ss_dssp CSEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeecCCCCCCeeEE
Confidence 359999999999997 888888777 8889999999888766554443
No 76
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=64.82 E-value=14 Score=27.63 Aligned_cols=43 Identities=23% Similarity=0.125 Sum_probs=34.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 64 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~Gli~r~~~~~d~R 106 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVE-QSTLSRALD-GLQADGLVRREVDSDDQR 106 (162)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEC--CCS
T ss_pred CCCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 3468999999999997 888888776 888999999887765444
No 77
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=64.07 E-value=14 Score=27.06 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=35.2
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++.
T Consensus 53 ~~~t~~ela~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~d~R 94 (152)
T 3bj6_A 53 PGATAPQLGAALQMK-RQYISRILQ-EVQRAGLIERRTNPEHAR 94 (152)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEECCSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeeecCCccccc
Confidence 369999999999997 888888776 888999999988765544
No 78
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=63.78 E-value=18 Score=26.75 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=50.6
Q ss_pred cchHHHHHHHHHHhhhhccCC-cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeeccCCCCCC
Q 027271 87 LVPDQVLKLKQLTVLTLAETN-KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAAGRDLRPG 165 (225)
Q Consensus 87 L~~~~~~Klr~LtLlsL~~~~-~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~~R~~~~~ 165 (225)
+++.+ -+-.+.|......+ .-+|..+||+.++++ ..+|-..+= ..+..|+|.=+-+.... .+....-
T Consensus 30 Lt~~e--~~vll~L~~~~~~~~~~ps~~~LA~~l~~s-~~~V~~~l~-~Le~kGlI~~~~~~~~~--------g~~~~~Y 97 (128)
T 2vn2_A 30 LGEGE--LVLLLHMQSFFEEGVLFPTPAELAERMTVS-AAECMEMVR-RLLQKGMIAIEEHTDEQ--------GIRNEKY 97 (128)
T ss_dssp CCHHH--HHHHHHHHHHHTTTCSSCCHHHHHHTSSSC-HHHHHHHHH-HHHHTTSSEECC------------------CE
T ss_pred CCHHH--HHHHHHHHHHHhcCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEeEECCC--------CcEEEEE
Confidence 44444 34556666665433 348999999999997 999999887 99999999887664331 1111122
Q ss_pred cHHHHHHHHHHHHH
Q 027271 166 QLGSMIQTLSNWLT 179 (225)
Q Consensus 166 q~~~L~~~L~~W~~ 179 (225)
++..|..+|..+..
T Consensus 98 dl~pl~~kL~~~~~ 111 (128)
T 2vn2_A 98 TLEPLWEKLVHHLY 111 (128)
T ss_dssp ECHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHH
Confidence 34556677666653
No 79
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=63.33 E-value=7.1 Score=30.51 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=33.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE---EecCC
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG---KLDQL 148 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g---kIDq~ 148 (225)
..+..+|+.+|++.++++ ...|-..+- +....|+|++ .+|..
T Consensus 27 ~~~~~~s~~eLA~~lglS-~~tv~~~l~-~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 27 KKDARLTISELSEQLKKP-ESTIHFRIK-KLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeecccCCHH
Confidence 334569999999999997 888888877 8889999986 45543
No 80
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=63.15 E-value=40 Score=24.31 Aligned_cols=46 Identities=15% Similarity=0.136 Sum_probs=31.1
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 110 isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
++..+|++.++++ ...|=..|= .....|+|.-.-|+.++.......
T Consensus 52 ~t~~eLa~~l~~s-~~tvs~~l~-~L~~~Glv~r~~~~~d~R~~~~~l 97 (146)
T 3tgn_A 52 LTNSELARRLNVS-QAAVTKAIK-SLVKEGMLETSKDSKDARVIFYQL 97 (146)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC----------CCEE
T ss_pred CCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCeEeccCCCCCceeEEEE
Confidence 9999999999997 888888777 899999999988876666544433
No 81
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=62.29 E-value=9.3 Score=25.12 Aligned_cols=44 Identities=20% Similarity=0.234 Sum_probs=33.2
Q ss_pred HHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 96 r~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
+.|.++. ..++.++..+||+.++++ ...|...+= ..-..|+|..
T Consensus 14 ~IL~~L~--~~~~~~s~~eLA~~lgls-r~tv~~~l~-~L~~~G~I~~ 57 (67)
T 2heo_A 14 KILQVLS--DDGGPVAIFQLVKKCQVP-KKTLNQVLY-RLKKEDRVSS 57 (67)
T ss_dssp HHHHHHH--HHCSCEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHH--HcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEec
Confidence 3444443 344679999999999998 899998876 6777888754
No 82
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=62.03 E-value=17 Score=26.04 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=37.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++....
T Consensus 51 ~~~t~~ela~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~R~~~ 95 (140)
T 2nnn_A 51 GPCPQNQLGRLTAMD-AATIKGVVE-RLDKRGLIQRSADPDDGRRLL 95 (140)
T ss_dssp SSBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTCEEEEEETTEEEEEE
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCCCCCCeee
Confidence 379999999999997 888888777 889999999988876655443
No 83
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=61.26 E-value=7.8 Score=26.76 Aligned_cols=45 Identities=13% Similarity=0.170 Sum_probs=33.4
Q ss_pred HHHHhhhhc-cCCcccChHHHHHHcCCCChHH-HHHHHHHHhHhcCccE
Q 027271 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRE-LEDFLINECMYTGIVR 142 (225)
Q Consensus 96 r~LtLlsL~-~~~~~isy~~I~~~L~i~~~~e-vE~lvI~~AI~~gLI~ 142 (225)
|.+.++.+. ..+..++..+|++.++++ ... |=..|= .....|+|.
T Consensus 16 ~~l~~L~~l~~~~~~~t~~eLa~~l~is-~~t~vs~~l~-~Le~~Glv~ 62 (95)
T 2pg4_A 16 RILPTLLEFEKKGYEPSLAEIVKASGVS-EKTFFMGLKD-RLIRAGLVK 62 (95)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHCCC-HHHHHTTHHH-HHHHTTSEE
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHCCC-chHHHHHHHH-HHHHCCCee
Confidence 444444333 444479999999999997 777 777666 788899999
No 84
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=60.85 E-value=14 Score=26.92 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=33.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v 152 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 50 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~D~R~ 92 (143)
T 3oop_A 50 EPISQKEIALWTKKD-TPTVNRIVD-VLLRKELIVREISTEDRRI 92 (143)
T ss_dssp SSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC----CCS
T ss_pred CCcCHHHHHHHHCCC-HhhHHHHHH-HHHHCCCeeccCCCccCce
Confidence 579999999999997 888887776 8899999998887665543
No 85
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=59.00 E-value=29 Score=23.96 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=31.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQL 148 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~ 148 (225)
+..++.+|++.++++ ...|=.-+= .....|+|..+-+..
T Consensus 35 ~~~~~~ela~~l~is-~~tvs~~L~-~L~~~Glv~~~~~g~ 73 (102)
T 3pqk_A 35 GEFSVGELEQQIGIG-QPTLSQQLG-VLRESGIVETRRNIK 73 (102)
T ss_dssp CCBCHHHHHHHHTCC-TTHHHHHHH-HHHHTTSEEEECSSS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeCC
Confidence 459999999999997 777776666 677899999876554
No 86
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=58.88 E-value=66 Score=25.46 Aligned_cols=35 Identities=23% Similarity=0.226 Sum_probs=30.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
..+++.+|++.++++ ...|-..+= .....|+|.+.
T Consensus 32 ~~~s~~eLA~~lglS-~stv~~~l~-~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKT-PQTIYHHIE-KLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 469999999999997 888887777 78889999987
No 87
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=58.59 E-value=13 Score=27.96 Aligned_cols=37 Identities=16% Similarity=0.234 Sum_probs=31.1
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
.+..+++.+|++.++++ ...|=..+= .....|+|.+.
T Consensus 18 ~~~~~s~~ela~~lg~s-~~tv~~~l~-~L~~~G~i~~~ 54 (150)
T 2w25_A 18 ADGRATLSELATRAGLS-VSAVQSRVR-RLESRGVVQGY 54 (150)
T ss_dssp HCTTCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 34569999999999997 888888777 88889999754
No 88
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=58.36 E-value=12 Score=27.92 Aligned_cols=43 Identities=9% Similarity=0.047 Sum_probs=30.6
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 61 ~~~~t~~ela~~l~is-~~tvs~~l~-~Le~~glv~r~~~~~d~R 103 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMD-KVAVSRAVA-RLLERGFIRRETHGDDRR 103 (162)
T ss_dssp STTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEC--------
T ss_pred CCCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEeeecCCCCCC
Confidence 4579999999999997 888888776 888999999877665544
No 89
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=58.29 E-value=10 Score=28.26 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=31.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 59 ~~~~~~~~ela~~l~i~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~~ 104 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVT-NGNVSGLVN-RLIKDGMVVKAMSADDRRSF 104 (160)
T ss_dssp CTTCEEHHHHHHHCSSC-CSCHHHHHH-HHHHHTSEEEC--------C
T ss_pred cCCCCCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCCCeE
Confidence 44579999999999997 777777766 88889999988776554433
No 90
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=58.03 E-value=35 Score=25.83 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=23.9
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE-Eec
Q 027271 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRG-KLD 146 (225)
Q Consensus 110 isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g-kID 146 (225)
++..++|+.+||+ ...+-.|- + .|||.. .-+
T Consensus 3 ~~I~e~A~~~gvs-~~tLR~Ye--~---~GLl~p~~r~ 34 (142)
T 3gp4_A 3 LNIKEASEKSGVS-ADTIRYYE--R---IGLIPPIHRN 34 (142)
T ss_dssp BCHHHHHHHHTSC-HHHHHHHH--H---HTSSCCCCBC
T ss_pred CcHHHHHHHHCcC-HHHHHHHH--H---CCCCCCCcCC
Confidence 6789999999997 88888872 2 488876 444
No 91
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=57.90 E-value=21 Score=25.63 Aligned_cols=45 Identities=18% Similarity=0.101 Sum_probs=37.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 47 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~~ 91 (138)
T 1jgs_A 47 ACITPVELKKVLSVD-LGALTRMLD-RLVCKGWVERLPNPNDKRGVL 91 (138)
T ss_dssp SSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECTTCSSCEE
T ss_pred CCCCHHHHHHHHCCC-hHHHHHHHH-HHHHCCCEEecCCcccCceeE
Confidence 468999999999997 888888776 888999999988876655443
No 92
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=57.19 E-value=51 Score=23.70 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=33.3
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 48 ~~~~~~~~la~~l~i~-~~~vs~~l~-~Le~~glv~r~~~~~d~R~~ 92 (147)
T 2hr3_A 48 GGDVTPSELAAAERMR-SSNLAALLR-ELERGGLIVRHADPQDGRRT 92 (147)
T ss_dssp TSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEC------CC
T ss_pred CCCCCHHHHHHHhCCC-hhhHHHHHH-HHHHCCCEeeCCCCCCCCce
Confidence 5579999999999997 888888776 88899999988776554433
No 93
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=56.39 E-value=15 Score=26.79 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=30.5
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkID 146 (225)
.+..++.+|++.++++ ...|-..+= .....|+|...=+
T Consensus 54 ~~~~s~~eLa~~l~is-~stvs~~L~-~L~~~Glv~~~~~ 91 (122)
T 1u2w_A 54 DEELCVCDIANILGVT-IANASHHLR-TLYKQGVVNFRKE 91 (122)
T ss_dssp SSCEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEC--
T ss_pred CCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEE
Confidence 3568999999999997 888887776 7778999987643
No 94
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=56.17 E-value=19 Score=25.29 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=31.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
+..++.+|++.++++ ...|-..+= .....|+|..+=+.
T Consensus 38 ~~~~~~ela~~l~is-~stvs~~L~-~L~~~Glv~~~~~g 75 (106)
T 1r1u_A 38 SEASVGHISHQLNLS-QSNVSHQLK-LLKSVHLVKAKRQG 75 (106)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEeC
Confidence 458999999999997 888887766 77789999987553
No 95
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=55.94 E-value=20 Score=31.21 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=43.3
Q ss_pred CChhhhhhhhCC--CCCcc----hHHHHHHHHHHhhhhccC----CcccChHHHHHHcCCCChHHHHHHHH
Q 027271 72 GTWSDYKNNAGH--LPQLV----PDQVLKLKQLTVLTLAET----NKVLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 72 G~~~d~~~~~~~--~~~L~----~~~~~Klr~LtLlsL~~~----~~~isy~~I~~~L~i~~~~evE~lvI 132 (225)
|+|..|-..... .|-+. +-....+|..+|-.++.. +..+|.+.+++.|+.+|.+++++|+-
T Consensus 177 gNY~rFFrL~~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~ 247 (316)
T 3t5v_A 177 NFYARFFQLMQSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCN 247 (316)
T ss_dssp CCHHHHHHHHTCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHH
T ss_pred chHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHH
Confidence 666666553332 34332 334678898787777743 36899999999999988899998865
No 96
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=55.19 E-value=49 Score=23.54 Aligned_cols=42 Identities=10% Similarity=0.027 Sum_probs=35.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEE
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCF 152 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v 152 (225)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++..
T Consensus 50 ~~~~~ela~~l~~~-~~tvs~~l~-~Le~~Gli~r~~~~~d~R~ 91 (141)
T 3bro_A 50 EVLQRDLESEFSIK-SSTATVLLQ-RMEIKKLLYRKVSGKDSRQ 91 (141)
T ss_dssp CCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSCTTS
T ss_pred CcCHHHHHHHHCCC-cchHHHHHH-HHHHCCCEEeeCCCcCCCe
Confidence 79999999999997 888888776 8889999998887765543
No 97
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=55.19 E-value=20 Score=25.76 Aligned_cols=42 Identities=17% Similarity=0.060 Sum_probs=35.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
..++..+|++.++++ ...|-..+= .....|+|.-.-|..++.
T Consensus 44 ~~~~~~ela~~l~is-~~~vs~~l~-~L~~~gli~~~~~~~d~r 85 (142)
T 3bdd_A 44 APLHQLALQERLQID-RAAVTRHLK-LLEESGYIIRKRNPDNQR 85 (142)
T ss_dssp CSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECSSSTT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCC
Confidence 469999999999997 888888777 889999999988865544
No 98
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=54.70 E-value=23 Score=25.77 Aligned_cols=49 Identities=12% Similarity=-0.022 Sum_probs=35.1
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~ 156 (225)
.+..++..+|++.++++ ...|=..|= .....|+|.-.-|+.++....-.
T Consensus 47 ~~~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~D~R~~~~~ 95 (140)
T 3hsr_A 47 NDEKLNIKKLGERVFLD-SGTLTPLLK-KLEKKDYVVRTREEKDERNLQIS 95 (140)
T ss_dssp TTCEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC-------CEEE
T ss_pred HcCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCeEecCCCCCcceeeee
Confidence 35689999999999997 888888777 89999999999887666544433
No 99
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=53.31 E-value=32 Score=25.94 Aligned_cols=45 Identities=9% Similarity=-0.038 Sum_probs=36.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 58 ~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~ 102 (168)
T 2nyx_A 58 GPINLATLATLLGVQ-PSATGRMVD-RLVGAELIDRLPHPTSRRELL 102 (168)
T ss_dssp CSEEHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEE
T ss_pred CCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeE
Confidence 369999999999997 888887766 888899999988876655443
No 100
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=52.93 E-value=49 Score=25.68 Aligned_cols=55 Identities=7% Similarity=0.029 Sum_probs=32.1
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 027271 165 GQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKS 219 (225)
Q Consensus 165 ~q~~~L~~~L~~W~~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
++-+.+...+++++..+......+++++..-+.-....+.-...+++.++++++.
T Consensus 68 ~~~e~l~~~veeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~ 122 (152)
T 4fla_A 68 EAAERLSKTVDEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKK 122 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777777777777777777766655544444444444444444444443
No 101
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=52.40 E-value=70 Score=23.80 Aligned_cols=50 Identities=8% Similarity=-0.011 Sum_probs=37.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeec
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAA 158 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~ 158 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.......+
T Consensus 60 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~DrR~~~l~LT 109 (168)
T 3u2r_A 60 PEGMATLQIADRLISR-APDITRLID-RLDDRGLVLRTRKPENRRVVEVALT 109 (168)
T ss_dssp TSCEEHHHHHHHC----CTHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEEC
T ss_pred CCCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEeecCCCCCCCeeEeEEC
Confidence 4579999999999997 778877766 8888999999999877765554443
No 102
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=52.17 E-value=9.5 Score=28.66 Aligned_cols=44 Identities=7% Similarity=-0.035 Sum_probs=34.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
..++..+|++.++++ ...|=..|= +....|+|.-.-|..++...
T Consensus 66 ~~~t~~eLa~~l~~~-~~~vs~~l~-~Le~~Glv~r~~~~~DrR~~ 109 (161)
T 3e6m_A 66 GELTVGQLATLGVME-QSTTSRTVD-QLVDEGLAARSISDADQRKR 109 (161)
T ss_dssp SEEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEECC---CCCSC
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeeCCcccCCee
Confidence 479999999999997 888887776 88999999988877655433
No 103
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=51.08 E-value=26 Score=25.66 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=32.2
Q ss_pred ccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 104 AETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 104 ~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
...+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....-
T Consensus 49 ~~~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~ 98 (150)
T 3fm5_A 49 CEQAEGVNQRGVAATMGLD-PSQIVGLVD-ELEERGLVVRTLDPSDRRNKLI 98 (150)
T ss_dssp HHSTTCCCSHHHHHHHTCC-HHHHHHHHH-HHHTTTSEEC-----------C
T ss_pred HhCCCCcCHHHHHHHHCCC-HhHHHHHHH-HHHHCCCEEeeCCccccchhee
Confidence 3444469999999999997 888887776 8899999998888776654443
No 104
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=50.80 E-value=33 Score=26.14 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCC
Q 027271 94 KLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLR 149 (225)
Q Consensus 94 Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~ 149 (225)
.++.|.++. .+..+..+|++.++++ ...|=.-+= .....|+|..+-+...
T Consensus 60 R~~IL~~L~----~~~~t~~eLa~~lgls-~stvs~hL~-~L~~aGlV~~~~~Gr~ 109 (151)
T 3f6v_A 60 RRRLVQLLT----SGEQTVNNLAAHFPAS-RSAISQHLR-VLTEAGLVTPRKDGRF 109 (151)
T ss_dssp HHHHHHHGG----GCCEEHHHHHTTSSSC-HHHHHHHHH-HHHHTTSEEEEEETTE
T ss_pred HHHHHHHHH----hCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEecCCE
Confidence 344444443 3568999999999997 888877666 6788999998865433
No 105
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=50.46 E-value=16 Score=26.60 Aligned_cols=41 Identities=17% Similarity=0.211 Sum_probs=34.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~ 150 (225)
..++..+|++.++++ ...|-..|= .....|+|.-.-|..++
T Consensus 53 ~~~~~~~la~~l~~~-~~tvs~~l~-~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 53 ETLTVKKMGEQLYLD-SGTLTPMLK-RMEQQGLITRKRSEEDE 93 (147)
T ss_dssp SEEEHHHHHHTTTCC-HHHHHHHHH-HHHHHTSEECCBCSSCT
T ss_pred CCCCHHHHHHHHCCC-cCcHHHHHH-HHHHCCCEEeccCCCCC
Confidence 378999999999997 888888777 88899999988776443
No 106
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=50.42 E-value=33 Score=24.88 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=39.2
Q ss_pred cchHHHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 87 LVPDQVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 87 L~~~~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
++..+..-|+ .|..+...+..++..+|++.++++ ...|=..+= .....|+|.-.
T Consensus 11 lt~~~~~~L~--~l~~l~~~~~~~s~~ela~~l~is-~~tv~~~l~-~Le~~Gli~r~ 64 (139)
T 2x4h_A 11 LSRREFSYLL--TIKRYNDSGEGAKINRIAKDLKIA-PSSVFEEVS-HLEEKGLVKKK 64 (139)
T ss_dssp CCHHHHHHHH--HHHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred cCHHHHHHHH--HHHHHHhcCCCcCHHHHHHHhCCC-hHHHHHHHH-HHHHCCCEEec
Confidence 4555433333 344555666789999999999997 888887766 77888999853
No 107
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=49.59 E-value=13 Score=27.05 Aligned_cols=45 Identities=11% Similarity=-0.023 Sum_probs=27.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 50 ~~~t~~eLa~~l~~~-~~tvs~~l~-~L~~~Glv~r~~~~~DrR~~~ 94 (142)
T 3ech_A 50 RGLNLQDLGRQMCRD-KALITRKIR-ELEGRNLVRRERNPSDQRSFQ 94 (142)
T ss_dssp TTCCHHHHHHHHC----CHHHHHHH-HHHHTTSEEC----------C
T ss_pred CCcCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEeeccCCCCCCeee
Confidence 369999999999997 778887777 889999999988886665443
No 108
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.77 E-value=20 Score=22.97 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=24.0
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
....||.+||+.++++ ...|...+- .|+
T Consensus 23 ~~g~s~~eIA~~lgis-~~tV~~~~~-ra~ 50 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVT-RERIRQIEA-KAL 50 (68)
T ss_dssp SSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 3579999999999997 999998877 665
No 109
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=48.21 E-value=49 Score=23.84 Aligned_cols=45 Identities=18% Similarity=0.045 Sum_probs=37.0
Q ss_pred ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 111 PYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 111 sy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
+..+|++.++++ ...|=..|= .....|+|.-.-|..++.......
T Consensus 52 ~~~~la~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~~~L 96 (144)
T 3f3x_A 52 SMVYLANRYFVT-QSAITAAVD-KLEAKGLVRRIRDSKDRRIVIVEI 96 (144)
T ss_dssp EHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEEEE
T ss_pred CHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeccCCCCCceEEEEE
Confidence 999999999997 888877766 888899999999887766554443
No 110
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=46.72 E-value=41 Score=26.25 Aligned_cols=49 Identities=14% Similarity=0.161 Sum_probs=35.3
Q ss_pred HHHHHHHhhhhcc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCc-cEE
Q 027271 93 LKLKQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGI-VRG 143 (225)
Q Consensus 93 ~Klr~LtLlsL~~-~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gL-I~g 143 (225)
..-|...|+.+.. +++.+|..+|++.++++ ...|-.-+= ..-..|+ |.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS-~~Ti~rdi~-~L~~~G~~I~~ 69 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVS-RQVIVQDIA-YLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 3456667777654 55679999999999997 877766554 4445787 764
No 111
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=46.04 E-value=23 Score=23.10 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=23.7
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
++...|+.+||+.++++ ...|...+- .|+
T Consensus 27 ~~~~~s~~eIA~~l~is-~~tV~~~~~-ra~ 55 (73)
T 1ku3_A 27 DGREHTLEEVGAYFGVT-RERIRQIEN-KAL 55 (73)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 33579999999999997 999988766 654
No 112
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=45.69 E-value=32 Score=23.54 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=30.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkI 145 (225)
..+++.+|++.++++ ...|-..+= .....|+|.-.-
T Consensus 42 ~~~~~~eLa~~l~is-~~tv~~~L~-~L~~~Glv~~~~ 77 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLS-KKQLDYHLK-VLEAGFCIERVG 77 (96)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEET
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEC
Confidence 469999999999997 888887776 788899998643
No 113
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=45.66 E-value=56 Score=22.92 Aligned_cols=54 Identities=13% Similarity=0.142 Sum_probs=26.4
Q ss_pred eeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcccc
Q 027271 156 FAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLSHK 223 (225)
Q Consensus 156 ~~~~R~~~~~q~~~L~~~L~~W~~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (225)
+..++.|=....+.....|..=.+.+. ......+.....++.++++.++.+.+.
T Consensus 52 ~~iG~vfv~~~~~e~~~~L~~~~e~i~--------------~~i~~le~~~~~~~~~l~~lk~~l~~~ 105 (107)
T 1fxk_A 52 KSSGNILIRVAKDELTEELQEKLETLQ--------------LREKTIERQEERVMKKLQEMQVNIQEA 105 (107)
T ss_dssp EEETTEEEEECHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHhccHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455444445555444444444333 333334444555566666666665543
No 114
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=45.60 E-value=1e+02 Score=23.67 Aligned_cols=50 Identities=4% Similarity=0.011 Sum_probs=40.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEee
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFA 157 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~ 157 (225)
++..++..+|++.++++ ...|=..|= .....|+|.-.-|+.++.......
T Consensus 54 ~~~~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR~~~l~L 103 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTS-KQNINRLVA-NLEKNGYVDVIPSPHDKRAINVKV 103 (189)
T ss_dssp CGGGCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEEECSSCSSCEEEEE
T ss_pred cCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEeccCCCCCCeeEEEE
Confidence 35689999999999997 888887777 889999999999987766544433
No 115
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=44.78 E-value=44 Score=22.78 Aligned_cols=48 Identities=4% Similarity=-0.004 Sum_probs=34.0
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
++..++..+|++.++++ ...|=.+|= .....|+|.-.-|.....+.++
T Consensus 27 ~~~~~t~~eLa~~l~i~-~~tvs~~l~-~Le~~Glv~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 27 GGNDVYIQYIASKVNSP-HSYVWLIIK-KFEEAKMVECELEGRTKIIRLT 74 (95)
T ss_dssp TTCCEEHHHHHHHSSSC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEEEC
T ss_pred CCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCcCccCCCCCCeEEEEEC
Confidence 44459999999999997 888877766 7888999944334333334433
No 116
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=43.65 E-value=33 Score=24.68 Aligned_cols=44 Identities=7% Similarity=0.123 Sum_probs=35.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 50 ~~~~~~ela~~l~~~-~~tvs~~l~-~L~~~gli~r~~~~~d~R~~ 93 (142)
T 2bv6_A 50 SPVNVKKVVTELALD-TGTVSPLLK-RMEQVDLIKRERSEVDQREV 93 (142)
T ss_dssp SEEEHHHHHHHTTCC-TTTHHHHHH-HHHHTTSEEEEECSSSTTCE
T ss_pred CCcCHHHHHHHHCCC-hhhHHHHHH-HHHHCCCEEeecCCCCcceE
Confidence 469999999999997 778887776 88889999988876554433
No 117
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=43.11 E-value=82 Score=21.92 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.2
Q ss_pred hhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 100 LlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
++..+..+ ++...||..++++ ...+-..+= .....|+|+-.
T Consensus 13 IL~~i~~~--~~~t~La~~~~ls-~~~~~~~l~-~L~~~GLI~~~ 53 (95)
T 1r7j_A 13 ILEACKSG--SPKTRIMYGANLS-YALTGRYIK-MLMDLEIIRQE 53 (95)
T ss_dssp HHHHHTTC--BCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHcC--CCHHHHHHHhCcC-HHHHHHHHH-HHHHCCCeEEE
Confidence 34444444 9999999999997 888887766 78889999876
No 118
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=42.88 E-value=26 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=24.5
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
.+...||.+||+.++++ ...|...+- .|+
T Consensus 35 ~~~~~s~~EIA~~lgis-~~tV~~~~~-ra~ 63 (87)
T 1tty_A 35 DGKPKTLEEVGQYFNVT-RERIRQIEV-KAL 63 (87)
T ss_dssp TSSCCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 34579999999999997 999998877 765
No 119
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=42.60 E-value=22 Score=24.99 Aligned_cols=38 Identities=16% Similarity=0.260 Sum_probs=31.8
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
.++..++-.+|++.+|++ ...|=..+- .....|+|...
T Consensus 29 ~~g~~~s~~eLa~~lgvs-~~tV~~~L~-~L~~~GlV~~~ 66 (110)
T 1q1h_A 29 DKGTEMTDEEIANQLNIK-VNDVRKKLN-LLEEQGFVSYR 66 (110)
T ss_dssp HHCSCBCHHHHHHTTTSC-HHHHHHHHH-HHHHHTSCEEE
T ss_pred HcCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEE
Confidence 345468999999999997 888887777 78889999875
No 120
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=42.39 E-value=24 Score=25.18 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=24.6
Q ss_pred CCcccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 106 TNKVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 106 ~~~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
++...||++||+.+|++ ...|...+- .|+
T Consensus 36 ~~e~~s~~EIA~~lgiS-~~tVr~~~~-rAl 64 (99)
T 3t72_q 36 MNTDYTLEEVGKQFDVT-RERIRQIEA-KAL 64 (99)
T ss_pred CCCCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 34679999999999997 899998877 775
No 121
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=41.61 E-value=49 Score=23.70 Aligned_cols=38 Identities=18% Similarity=0.141 Sum_probs=31.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
+..++.+|++.++++ ...|-..+= .....|+|..+-+.
T Consensus 33 ~~~~~~eLa~~lgis-~stvs~~L~-~L~~~GlV~~~~~g 70 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLT-RSNVSNHLS-CLRGCGLVVATYEG 70 (118)
T ss_dssp TCCSTTTHHHHHSSC-HHHHHHHHH-HHTTTTSEEEEECS
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCceEEEEEC
Confidence 357999999999997 888887776 77889999887653
No 122
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=41.08 E-value=28 Score=25.11 Aligned_cols=48 Identities=6% Similarity=0.007 Sum_probs=37.9
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEe
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQF 156 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~ 156 (225)
...++..+|++.++++ ...|=..|= .....|+|.-+-|..++......
T Consensus 51 ~~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~D~R~~~i~ 98 (127)
T 2frh_A 51 EKEYYLKDIINHLNYK-QPQVVKAVK-ILSQEDYFDKKRNEHDERTVLIL 98 (127)
T ss_dssp CSEEEHHHHHHHSSSH-HHHHHHHHH-HHHHTTSSCCBCCSSSSCCCEEE
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCCCCCCCeeEEE
Confidence 3679999999999997 777777766 88889999988887766544433
No 123
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=40.57 E-value=39 Score=24.57 Aligned_cols=43 Identities=12% Similarity=0.094 Sum_probs=33.1
Q ss_pred hhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 100 LlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
|+.+...+..++..+|++.++++ ...|=..+= .....|+|.-.
T Consensus 13 i~~l~~~~~~~~~~ela~~l~vs-~~tvs~~l~-~Le~~Glv~r~ 55 (142)
T 1on2_A 13 IYMLIEEKGYARVSDIAEALAVH-PSSVTKMVQ-KLDKDEYLIYE 55 (142)
T ss_dssp HHHHHHHHSSCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHhhcCCCCHHHHHHHhCCC-HHHHHHHHH-HHHHCCCEEEe
Confidence 33344444569999999999997 888877766 78889999865
No 124
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=40.53 E-value=25 Score=25.81 Aligned_cols=42 Identities=14% Similarity=0.016 Sum_probs=33.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE--EecCCCCE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG--KLDQLRRC 151 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g--kIDq~~~~ 151 (225)
..++..+|++.++++ ...|=..|= .....|+|.- .-|..++.
T Consensus 54 ~~~t~~eLa~~l~~~-~~tvs~~l~-~Le~~Glv~r~~~~~~~d~R 97 (154)
T 2qww_A 54 PGISVADLTKRLIIT-GSSAAANVD-GLISLGLVVKLNKTIPNDSM 97 (154)
T ss_dssp TTEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEESCC--CTTCT
T ss_pred CCCCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEecCcCCCCCCc
Confidence 469999999999997 888888777 8999999998 66665554
No 125
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=40.19 E-value=24 Score=31.24 Aligned_cols=50 Identities=10% Similarity=0.144 Sum_probs=38.5
Q ss_pred HHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 93 LKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 93 ~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
+......++.+...+..+|..+|++.++++ ...|-..+= +.+..|+|...
T Consensus 37 r~~n~~~il~~l~~~~~~sr~ela~~~gls-~~tv~~~v~-~L~~~gli~~~ 86 (429)
T 1z05_A 37 KQINAGRVYKLIDQKGPISRIDLSKESELA-PASITKITR-ELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHHHHHHCSBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 333334456655566789999999999997 889988877 89999998763
No 126
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=39.62 E-value=45 Score=19.30 Aligned_cols=30 Identities=13% Similarity=-0.018 Sum_probs=22.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 192 IKWADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
+++.....++...+..+++.+|+-+|+-+.
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~ 32 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLX 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 455566667777888889999998887654
No 127
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=39.39 E-value=37 Score=24.79 Aligned_cols=43 Identities=16% Similarity=0.104 Sum_probs=32.2
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
+..++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 59 ~~~~t~~ela~~l~~s-~~tvs~~l~-~Le~~glv~r~~~~~d~R 101 (153)
T 2pex_A 59 TDERSVSEIGERLYLD-SATLTPLLK-RLQAAGLVTRTRAASDER 101 (153)
T ss_dssp SCSEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEC------
T ss_pred CCCcCHHHHHHHhCCC-cccHHHHHH-HHHHCCCEeecCCcccCC
Confidence 3469999999999997 888888777 889999999887765544
No 128
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=39.30 E-value=60 Score=23.93 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=42.3
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEEeec
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQFAA 158 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~~~~ 158 (225)
.+.|.++... ++..++..+|++.++++ ...+=..|= .....|+|.=.-|..++....-..+
T Consensus 38 ~~vL~~L~~~-~~~~~t~~eLa~~l~~~-~~tvs~~v~-~Le~~Glv~r~~~~~DrR~~~l~LT 98 (147)
T 4b8x_A 38 YEALVLLTFS-KSGELPMSKIGERLMVH-PTSVTNTVD-RLVRSGLVAKRPNPNDGRGTLATIT 98 (147)
T ss_dssp HHHHHHHHTS-GGGEEEHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEECC----CEEEEEC
T ss_pred HHHHHHHHHC-CCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCEEEeecCCcCceeEEEEC
Confidence 3344444433 34579999999999997 888887766 8899999999999887765554443
No 129
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=39.22 E-value=24 Score=20.17 Aligned_cols=22 Identities=9% Similarity=0.227 Sum_probs=19.1
Q ss_pred cChHHHHHHcCCCChHHHHHHHH
Q 027271 110 LPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 110 isy~~I~~~L~i~~~~evE~lvI 132 (225)
.++.+||+.++|+ ...|-.|+=
T Consensus 22 ~s~~~IA~~lgis-~~Tv~~~~~ 43 (51)
T 1tc3_C 22 VSLHEMSRKISRS-RHCIRVYLK 43 (51)
T ss_dssp CCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHHh
Confidence 6899999999997 888888754
No 130
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=39.21 E-value=40 Score=25.66 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=29.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCE
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRC 151 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~ 151 (225)
.++..+|++.++++ ...|=..|= .....|+|.-.-|..++.
T Consensus 86 ~~t~~eLa~~l~is-~~tvs~~l~-~Le~~GlV~r~~~~~DrR 126 (181)
T 2fbk_A 86 GLRPTELSALAAIS-GPSTSNRIV-RLLEKGLIERREDERDRR 126 (181)
T ss_dssp CBCHHHHHHHCSCC-SGGGSSHHH-HHHHHTSEECCC------
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH-HHHHCcCEEecCCCCCCC
Confidence 49999999999997 777766665 778899999887765544
No 131
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=38.52 E-value=27 Score=23.83 Aligned_cols=27 Identities=7% Similarity=0.121 Sum_probs=22.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
.-.||.+||+.+|++ ...|...+- .|+
T Consensus 52 ~g~s~~eIA~~lgis-~~tV~~~l~-ra~ 78 (92)
T 3hug_A 52 RGWSTAQIATDLGIA-EGTVKSRLH-YAV 78 (92)
T ss_dssp SCCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 457999999999997 999988877 654
No 132
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=35.96 E-value=13 Score=25.99 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 027271 125 RELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 125 ~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..||+.+| .+...|-|.|+||+
T Consensus 37 ~~VE~~Li-~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 37 EQIELQLI-QLAQMGRVRSKITD 58 (80)
T ss_dssp HHHHHHHH-HHHHCCSSCCCCCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 89999999999986
No 133
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.75 E-value=68 Score=22.81 Aligned_cols=42 Identities=12% Similarity=0.073 Sum_probs=20.6
Q ss_pred eeccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027271 156 FAAGRDLRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADS 197 (225)
Q Consensus 156 ~~~~R~~~~~q~~~L~~~L~~W~~~v~~~l~~ie~~~~~~~~ 197 (225)
+..++.|=....+.....|..=.+.+...+..++.++.+...
T Consensus 57 ~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~ 98 (117)
T 2zqm_A 57 KTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNE 98 (117)
T ss_dssp EEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544455555555555555544444444444444333
No 134
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=35.59 E-value=54 Score=19.01 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=22.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 191 KIKWADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
++++.....++...+..+++.+|+-+|+-+.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~ 32 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLG 32 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhc
Confidence 3455556667777888889999998887654
No 135
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=35.50 E-value=1.6e+02 Score=23.83 Aligned_cols=100 Identities=7% Similarity=0.011 Sum_probs=58.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE-EecCCCCEEEEEee---------ccCC--CCCCcHHHHHHHHH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG-KLDQLRRCFEVQFA---------AGRD--LRPGQLGSMIQTLS 175 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g-kIDq~~~~v~V~~~---------~~R~--~~~~q~~~L~~~L~ 175 (225)
+.++..++|+.+||+ ...+-.| +- .||+.. +.|..+|.=.-+.. ..|. |+.+++..+ |.
T Consensus 4 ~~~~i~e~a~~~gvs-~~tlr~y---~~--~gll~p~~~d~~~g~R~y~~~~~~~l~~i~~l~~~g~~l~~i~~~---~~ 74 (278)
T 1r8e_A 4 SYYSIGEVSKLANVS-IKALRYY---DK--IDLFKPAYVDPDTSYRYYTDSQLIHLDLIKSLKYIGTPLEEMKKA---QD 74 (278)
T ss_dssp CEEEHHHHHHHHTCC-HHHHHHH---HH--TTSSCCSEECTTTCCEEEETGGGGHHHHHHHHHHTTCCHHHHHHH---TT
T ss_pred CcEeHHHHHHHHCcC-HHHHHHH---HH--CCCCCCCccCCCCCccccCHHHHHHHHHHHHHHHCCCCHHHHHHH---HH
Confidence 457889999999997 8888877 22 588865 56555543221100 0111 222233322 21
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Q 027271 176 NWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKS 219 (225)
Q Consensus 176 ~W~~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (225)
.. ...+...++++.....++.+...+..+.++..+...++.
T Consensus 75 ~~---~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 75 LE---MEELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp SC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 344556677777777777777777777777776666554
No 136
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=35.43 E-value=1.2e+02 Score=21.80 Aligned_cols=52 Identities=19% Similarity=0.150 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 170 MIQTLSNWLTTSDNLLISIQE---KIKWADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 170 L~~~L~~W~~~v~~~l~~ie~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
.-..|.+-..++++....|.+ ++.++..+++...-.-=-++.+|+-+||-+|
T Consensus 53 nTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kkl~~ 107 (114)
T 2xzr_A 53 NTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKKLIK 107 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344455555666666666654 4555666666666666677888888888776
No 137
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.40 E-value=62 Score=18.74 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=23.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 191 KIKWADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
++++.....++...+..+++.+|+-.|.-+.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~ 32 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVX 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3556666777778888889999988887554
No 138
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=35.02 E-value=82 Score=21.62 Aligned_cols=27 Identities=4% Similarity=0.266 Sum_probs=22.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
.-.++.+||+.++++ ...|...+- .+.
T Consensus 41 ~g~s~~eIA~~l~is-~~tV~~~l~-r~~ 67 (95)
T 3c57_A 41 EGLTNKQIADRMFLA-EKTVKNYVS-RLL 67 (95)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 347999999999997 999998766 543
No 139
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=34.88 E-value=94 Score=22.41 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.8
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkID 146 (225)
+..++.+|++.++++ ...|=..+= ..-..|+|..+-+
T Consensus 58 ~~~s~~ela~~lgis-~stvs~~L~-~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVS-ESAVSHQLR-SLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCeEEEEe
Confidence 468999999999997 888877766 6777999988755
No 140
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=34.65 E-value=54 Score=27.11 Aligned_cols=44 Identities=27% Similarity=0.224 Sum_probs=35.5
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
..++..+|++.++++ ...|-..+= .....|+|+.. ...+.+.++
T Consensus 165 ~~~s~~eLA~~lgls-ksTv~r~L~-~Le~~GlV~r~--~r~~~~~LT 208 (244)
T 2wte_A 165 KGTGITELAKMLDKS-EKTLINKIA-ELKKFGILTQK--GKDRKVELN 208 (244)
T ss_dssp TCBCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE--TTTTEEEEC
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe--CCccEEEEC
Confidence 469999999999997 889988877 88889999986 444555554
No 141
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=34.62 E-value=91 Score=25.11 Aligned_cols=51 Identities=18% Similarity=0.176 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 027271 170 MIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (225)
Q Consensus 170 L~~~L~~W~~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
..+.+.-|+.....+...+++.-...+.-.+.+..-..+++..+..+.|..
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~ 58 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRN 58 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566655555555555555555555555555555555555555443
No 142
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=34.59 E-value=52 Score=22.67 Aligned_cols=25 Identities=20% Similarity=0.280 Sum_probs=20.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHh
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~A 135 (225)
-.++.+||+.|+|+ ...|+..+- .+
T Consensus 44 G~s~~eIA~~L~iS-~~TV~~~~~-~i 68 (90)
T 3ulq_B 44 GFTNQEIADALHLS-KRSIEYSLT-SI 68 (90)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 37999999999997 889887766 53
No 143
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=33.91 E-value=64 Score=18.70 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=22.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 027271 192 IKWADSMNEMDKKHRKDLEEKVEEAKKSLSH 222 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
+++.....++...+..+++.+|+-+|+-+..
T Consensus 3 M~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 4455566677777888899999988887653
No 144
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=33.38 E-value=63 Score=27.33 Aligned_cols=51 Identities=12% Similarity=0.165 Sum_probs=39.1
Q ss_pred HHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecC
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq 147 (225)
.|++..+........++-.+|++.|+++ ...|=..+- .+-..|+|+-+++.
T Consensus 7 ~~~~~~ia~l~~~~~~~~~ela~~l~vS-~~tIrRdL~-~l~~~G~v~iri~g 57 (315)
T 2w48_A 7 IRLIVKIAQLYYEQDMTQAQIARELGIY-RTTISRLLK-RGREQGIVTIAINY 57 (315)
T ss_dssp HHHHHHHHHHHHTSCCCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEEECS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEEecC
Confidence 4444444333444569999999999997 889988888 89999999977766
No 145
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=33.30 E-value=14 Score=25.88 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 027271 125 RELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 125 ~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..||+.+| .+...|-|.|+||+
T Consensus 35 ~~VE~~Li-~lAq~Gqi~~ki~e 56 (81)
T 2fh0_A 35 QAVETYLK-KLIATNNVTHKITE 56 (81)
T ss_dssp HHHHHHHH-HHHHHTCCSCCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 89999999999987
No 146
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=32.73 E-value=55 Score=18.96 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=22.5
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 192 IKWADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
+++.....++...+..+++.+|+..|+.+.
T Consensus 3 MnQLEdkVEeLl~~~~~Le~eV~RL~~ll~ 32 (34)
T 2hy6_A 3 VKQLADAVEELASANYHLANAVARLAKAVG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 455566667777888888999988888664
No 147
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=32.25 E-value=48 Score=27.32 Aligned_cols=44 Identities=18% Similarity=0.129 Sum_probs=35.8
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
+...+..+|++.++++ ..+|+..+- +....|+|+- ..+++|.+.
T Consensus 176 ~~~~t~~~la~~~~l~-~~~V~~~l~-~L~~~~~v~~---~~~~~~~~~ 219 (232)
T 2qlz_A 176 NGRATVEELSDRLNLK-EREVREKIS-EMARFVPVKI---INDNTVVLD 219 (232)
T ss_dssp SSEEEHHHHHHHHTCC-HHHHHHHHH-HHTTTSCEEE---ETTTEEEEC
T ss_pred cCCCCHHHHHHHhCcC-HHHHHHHHH-HHHhcCCeEE---ecCCeEEec
Confidence 4689999999999998 999999888 9999999982 234566553
No 148
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=31.26 E-value=36 Score=25.49 Aligned_cols=27 Identities=15% Similarity=0.286 Sum_probs=23.3
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
...||.+||+.+|++ ...|...+- .|.
T Consensus 108 ~g~s~~EIA~~lgis-~~tV~~~l~-rar 134 (157)
T 2lfw_A 108 EGFSPEDAAYLIEVD-TSEVETLVT-EAL 134 (157)
T ss_dssp SCCCHHHHHHTTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 458999999999997 999998877 664
No 149
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=31.24 E-value=13 Score=28.35 Aligned_cols=38 Identities=11% Similarity=0.149 Sum_probs=29.0
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
.++..+|+.+|++.+|++ ...|-.-+- ..-..|+|++.
T Consensus 23 ~~~~~ls~~eLa~~lgvS-r~~vr~al~-~L~~~Gli~~~ 60 (163)
T 2gqq_A 23 QKDGRISNVELSKRVGLS-PTPCLERVR-RLERQGFIQGY 60 (163)
T ss_dssp HHCSSCCTTGGGTSSSCC-TTTSSSTHH-HHHHHTSEEEE
T ss_pred HhCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEE
Confidence 445567999999999997 766655555 67778999864
No 150
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.79 E-value=98 Score=19.18 Aligned_cols=26 Identities=12% Similarity=0.120 Sum_probs=21.6
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
..|+.+||+.+|++ ...|...+- .|.
T Consensus 31 g~s~~eIA~~lgis-~~tv~~~~~-ra~ 56 (70)
T 2o8x_A 31 GLSYADAAAVCGCP-VGTIRSRVA-RAR 56 (70)
T ss_dssp CCCHHHHHHHHTSC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 48999999999997 888887766 554
No 151
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.67 E-value=73 Score=18.67 Aligned_cols=29 Identities=28% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 027271 192 IKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+++.....++...+..+++.+|+..|+-+
T Consensus 3 MnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 44555556666677777777777777654
No 152
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=30.34 E-value=32 Score=25.13 Aligned_cols=38 Identities=8% Similarity=-0.020 Sum_probs=32.2
Q ss_pred cCCcccChHHHHHHc--CCCChHHHHHHHHHHhHhcCccEEE
Q 027271 105 ETNKVLPYDELMEEL--DVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 105 ~~~~~isy~~I~~~L--~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
.....+++.+|++.+ +++ ...|-.-+= .....|+|+..
T Consensus 23 ~~~g~~s~~eLA~~l~~giS-~~aVs~rL~-~Le~~GLV~~~ 62 (111)
T 3b73_A 23 HEEGNGSPKELEDRDEIRIS-KSSVSRRLK-KLADHDLLQPL 62 (111)
T ss_dssp HHHSCBCHHHHHTSTTCCSC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHcCCCCHHHHHHHHhcCCC-HHHHHHHHH-HHHHCCCEEec
Confidence 333489999999999 996 888988888 88899999985
No 153
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=30.19 E-value=74 Score=27.08 Aligned_cols=44 Identities=14% Similarity=0.177 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 178 LTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 178 ~~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
...+.+-+..++.++.+..+..++-....+.|+++|+.+||-+|
T Consensus 218 ~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (268)
T 2yo3_A 218 MGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIKKLIK 261 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34666667778888888899989889999999999999999876
No 154
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.04 E-value=48 Score=20.30 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=18.2
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI 132 (225)
-.|+.+||+.++++ ...|...+=
T Consensus 13 g~s~~eIA~~l~is-~~tV~~~~~ 35 (61)
T 2jpc_A 13 GYTNHGISEKLHIS-IKTVETHRM 35 (61)
T ss_dssp SCCSHHHHHHTCSC-HHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-HHHHHHHHH
Confidence 36899999999997 877776544
No 155
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=29.72 E-value=56 Score=26.37 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=18.6
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI 132 (225)
-.++.+||+.|+|+ ...|+..+-
T Consensus 190 G~s~~eIa~~l~is-~~tV~~~~~ 212 (237)
T 3szt_A 190 GKTYGEIGLILSID-QRTVKFHIV 212 (237)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 37899999999996 888876544
No 156
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=29.12 E-value=80 Score=25.18 Aligned_cols=52 Identities=6% Similarity=0.167 Sum_probs=40.2
Q ss_pred HhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 99 TVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 99 tLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
+|..|...+..++..+||+.++++ ...|=..+= +.-..|+|.=.=| +.+.+|
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs-~~tvs~~l~-~Le~~GlV~r~~~---~~i~LT 61 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVS-PPAVTEMMK-KLLAEELLIKDKK---AGYLLT 61 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEETT---TEEEEC
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEEecC---CCeEEC
Confidence 455566677889999999999997 888888777 8888999976543 445544
No 157
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=28.62 E-value=72 Score=25.48 Aligned_cols=23 Identities=13% Similarity=0.024 Sum_probs=18.7
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI 132 (225)
-.|+.+||+.|+|+ ...|...+-
T Consensus 188 g~s~~eIa~~l~is-~~tV~~~~~ 210 (234)
T 1l3l_A 188 GKTMEEIADVEGVK-YNSVRVKLR 210 (234)
T ss_dssp TCCHHHHHHHHTCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46999999999997 888776554
No 158
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=28.23 E-value=43 Score=26.54 Aligned_cols=45 Identities=11% Similarity=-0.090 Sum_probs=33.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++....
T Consensus 61 ~~~t~~eLa~~l~i~-~stvs~~l~-~Le~~GlV~r~~~~~DrR~~~ 105 (207)
T 2fxa_A 61 NGASISEIAKFGVMH-VSTAFNFSK-KLEERGYLRFSKRLNDKRNTY 105 (207)
T ss_dssp TSEEHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEEECC------CE
T ss_pred CCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCceEE
Confidence 369999999999997 888887766 888999999999876655443
No 159
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=28.18 E-value=84 Score=18.08 Aligned_cols=30 Identities=20% Similarity=0.117 Sum_probs=21.3
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhccc
Q 027271 193 KWADSMNEMDKKHRKDLEEKVEEAKKSLSH 222 (225)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
++.....++...+..+++.+|+-.|+-++.
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 344555666777788888888888876653
No 160
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=28.10 E-value=1.1e+02 Score=18.79 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=29.8
Q ss_pred HHHHHhhhhccCCcccChHHHHHHc-----CCCChHHHHHHHHHHhHhcCcc
Q 027271 95 LKQLTVLTLAETNKVLPYDELMEEL-----DVTNVRELEDFLINECMYTGIV 141 (225)
Q Consensus 95 lr~LtLlsL~~~~~~isy~~I~~~L-----~i~~~~evE~lvI~~AI~~gLI 141 (225)
-|...|..+...++.++-++|++.+ +++ ...|=.-+= ..|++
T Consensus 5 ~R~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs-~~Tv~R~L~----~lg~v 51 (64)
T 2p5k_A 5 QRHIKIREIITSNEIETQDELVDMLKQDGYKVT-QATVSRDIK----ELHLV 51 (64)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHTTCCCC-HHHHHHHHH----HHTCE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCcC-HHHHHHHHH----HcCCE
Confidence 4555555555556789999999999 996 777765433 25777
No 161
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=28.02 E-value=40 Score=23.19 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=31.3
Q ss_pred ccCCcccChHHHHHHcCCCChH-HHHHHHHHHhHhcCccE
Q 027271 104 AETNKVLPYDELMEELDVTNVR-ELEDFLINECMYTGIVR 142 (225)
Q Consensus 104 ~~~~~~isy~~I~~~L~i~~~~-evE~lvI~~AI~~gLI~ 142 (225)
-...+..+-.+||+.|+|+ .. .|-.-+- +.-..|+|.
T Consensus 20 Lk~~g~~ta~eiA~~Lgit-~~~aVr~hL~-~Le~eGlV~ 57 (79)
T 1xmk_A 20 LFNVSDSSALNLAKNIGLT-KARDINAVLI-DMERQGDVY 57 (79)
T ss_dssp HHHTCCEEHHHHHHHHCGG-GHHHHHHHHH-HHHHTTSEE
T ss_pred HHHcCCcCHHHHHHHcCCC-cHHHHHHHHH-HHHHCCCEE
Confidence 3455678999999999997 77 9988888 888899998
No 162
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=27.78 E-value=1.4e+02 Score=19.85 Aligned_cols=56 Identities=11% Similarity=0.153 Sum_probs=41.2
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 027271 162 LRPGQLGSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDKKHRKDLEEKVEEAK 217 (225)
Q Consensus 162 ~~~~q~~~L~~~L~~W~~~v~~~l~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (225)
++.++...|..++.+-...+..+.+.|+.-.............+++.+..=+.+++
T Consensus 3 VS~EEF~~L~rRVlqLE~sl~gI~SqIDaV~~KL~~~Er~k~~~re~m~kll~~~~ 58 (64)
T 3hrn_A 3 VSYEEFQVLVRRVDRMEHSIGSIVSKIDAVIVKLEIMERAKLKRREVLGRLLDGVA 58 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccc
Confidence 34567778899999999999999999988777777776666666666555444443
No 163
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=27.72 E-value=87 Score=21.58 Aligned_cols=51 Identities=12% Similarity=0.188 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhhccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 92 VLKLKQLTVLTLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 92 ~~Klr~LtLlsL~~~~~~i-sy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
...++..-+-....++..+ +..+|++.++++ ...|-.-+- ..-..|+|..+
T Consensus 17 ~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vS-r~tvr~al~-~L~~~Gli~~~ 68 (102)
T 1v4r_A 17 ATHFRTLIKSGELAPGDTLPSVADIRAQFGVA-AKTVSRALA-VLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSC-TTHHHHHTT-TTTTSSCCEEE
T ss_pred HHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEe
Confidence 3445544333355667777 899999999997 788877666 67788998753
No 164
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=27.66 E-value=2.5e+02 Score=22.85 Aligned_cols=75 Identities=11% Similarity=0.031 Sum_probs=49.8
Q ss_pred CchHHHHHHHHHhcCChhhhhhhhCCCCCcchH---HHHHHHHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHH
Q 027271 58 ENSKYLDMLRLFAHGTWSDYKNNAGHLPQLVPD---QVLKLKQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 58 ~~~~l~~LL~iF~~G~~~d~~~~~~~~~~L~~~---~~~Klr~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI 132 (225)
+-..+..|=..+-.|++..|.+....-+++.+. -...+|.=..-.+...++.|+.+.+++-||..+.++++.|+-
T Consensus 98 ~I~~i~~L~~~L~~~~y~~fW~~l~~~~~l~~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~ 175 (226)
T 1rz4_A 98 PIRQILYLGDLLETCHFQAFWQALDENMDLLEGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMS 175 (226)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHSCTTCHHHHTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhcChhHHHHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHH
Confidence 345677788888999999888643322322211 123445433333446788999999999996335899999977
No 165
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=27.52 E-value=49 Score=24.01 Aligned_cols=27 Identities=11% Similarity=0.276 Sum_probs=22.7
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
...||.+||+.+|++ ...|...+- .|.
T Consensus 123 ~g~s~~EIA~~lgis-~~tV~~~~~-ra~ 149 (164)
T 3mzy_A 123 RGYSYREIATILSKN-LKSIDNTIQ-RIR 149 (164)
T ss_dssp TTCCHHHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 457999999999997 999988776 654
No 166
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.50 E-value=89 Score=20.77 Aligned_cols=25 Identities=20% Similarity=0.263 Sum_probs=20.8
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHh
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINEC 135 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~A 135 (225)
-.++.+||+.++++ ...|...+- .+
T Consensus 36 g~s~~eIA~~l~is-~~tV~~~l~-r~ 60 (82)
T 1je8_A 36 GLPNKMIARRLDIT-ESTVKVHVK-HM 60 (82)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH-HH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HH
Confidence 47999999999997 888887765 54
No 167
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=27.08 E-value=72 Score=25.50 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=18.8
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI 132 (225)
-.++.+||+.|+|+ ...|...+-
T Consensus 190 g~s~~eIa~~l~is-~~tV~~~~~ 212 (236)
T 2q0o_A 190 GKTASVTANLTGIN-ARTVQHYLD 212 (236)
T ss_dssp TCCHHHHHHHHCCC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46899999999997 888876654
No 168
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=27.00 E-value=89 Score=27.14 Aligned_cols=44 Identities=11% Similarity=0.089 Sum_probs=36.3
Q ss_pred HHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 98 LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
..++.+...+..+|-.+|++.++++ ...|-..+= +.+..|+|..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls-~~tv~~~v~-~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLA-PASITKIVH-EMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCcEEe
Confidence 3456666677789999999999997 888888777 8899999865
No 169
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=26.82 E-value=67 Score=26.10 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=34.7
Q ss_pred HHhhhhc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 98 LTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 98 LtLlsL~-~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
+.++.+. ...+.++..+|++.++++ ...+-.++= .....|+|.-.
T Consensus 11 l~iL~~l~~~~~~~~~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~~ 56 (249)
T 1mkm_A 11 FEILDFIVKNPGDVSVSEIAEKFNMS-VSNAYKYMV-VLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHHCSSCBCHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcEEEC
Confidence 4444433 344579999999999997 888888777 78889999865
No 170
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=26.65 E-value=1.4e+02 Score=20.87 Aligned_cols=42 Identities=12% Similarity=0.181 Sum_probs=33.3
Q ss_pred hhccCCccc-ChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEe
Q 027271 102 TLAETNKVL-PYDELMEELDVTNVRELEDFLINECMYTGIVRGKL 145 (225)
Q Consensus 102 sL~~~~~~i-sy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkI 145 (225)
....++..+ +..+|++.++++ ..-|-.-+- ..-..|+|.-.=
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVS-r~tVr~al~-~L~~~GlI~~~~ 77 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGIT-RSVIVNALR-KLESAGVIESRS 77 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEe
Confidence 555666666 999999999996 888877777 788899987643
No 171
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=26.16 E-value=1.7e+02 Score=20.48 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=22.5
Q ss_pred cChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 110 LPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 110 isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
++..++|+.+||+ ...+-.| . + .|++..
T Consensus 3 ~~i~e~A~~~gvs-~~tLR~y-e-~---~Gll~p 30 (109)
T 1r8d_A 3 YQVKQVAEISGVS-IRTLHHY-D-N---IELLNP 30 (109)
T ss_dssp BCHHHHHHHHSCC-HHHHHHH-H-H---TTSSCC
T ss_pred ccHHHHHHHHCcC-HHHHHHH-H-H---CCCCCC
Confidence 6789999999997 8888888 2 3 588764
No 172
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=26.00 E-value=1e+02 Score=21.59 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=30.0
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEec
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLD 146 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkID 146 (225)
...++.+|++.++++ ...|=..+= .....|+|.-.=+
T Consensus 44 ~~~s~~ela~~l~is-~stvsr~l~-~Le~~Glv~~~~~ 80 (119)
T 2lkp_A 44 GPLPVTDLAEAIGME-QSAVSHQLR-VLRNLGLVVGDRA 80 (119)
T ss_dssp CCCCHHHHHHHHSSC-HHHHHHHHH-HHHHHCSEEEEEE
T ss_pred CCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEEEec
Confidence 468999999999997 888877766 7777899976543
No 173
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=25.90 E-value=17 Score=26.66 Aligned_cols=44 Identities=7% Similarity=0.036 Sum_probs=25.6
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
..++..+|++.++++ ...|=..|= .....|+|.-.-|..++...
T Consensus 56 ~~~t~~eLa~~l~~~-~~~vs~~l~-~L~~~Glv~r~~~~~DrR~~ 99 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRR-GASITSMLQ-GLEKKGYIERRIPENNARQK 99 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHH-HHHHTTSBCCC--------C
T ss_pred CCCCHHHHHHHHCCC-hhHHHHHHH-HHHHCCCEEeeCCCCCchhh
Confidence 579999999999997 777777766 88889999988877665543
No 174
>3gva_A Alkyltransferase-like protein 1; alkylated DNA damage repair, DNA damage, DNA repair, DNA- binding, DNA binding protein; 2.00A {Schizosaccharomyces pombe} PDB: 3gx4_X* 3gyh_X* 4enj_A* 4enk_A* 4enm_A* 4enn_A* 4hdu_A* 4hdv_A*
Probab=25.46 E-value=56 Score=24.19 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=21.7
Q ss_pred HHHHhhhhccCCcccChHHHHHHcCCC
Q 027271 96 KQLTVLTLAETNKVLPYDELMEELDVT 122 (225)
Q Consensus 96 r~LtLlsL~~~~~~isy~~I~~~L~i~ 122 (225)
+....+.-+..+++.||.+||+.++.|
T Consensus 9 ~Vw~~l~~IP~G~v~TYg~IA~~~G~p 35 (116)
T 3gva_A 9 KVYDAVCEIPYGKVSTYGEIARYVGMP 35 (116)
T ss_dssp HHHHHHTTSCTTCBBCHHHHHHHTTCT
T ss_pred HHHHHHhcCCCCCeEeHHHHHHHhCCC
Confidence 345556666789999999999999986
No 175
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.41 E-value=1.1e+02 Score=19.56 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=21.4
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
.-.++.+||+.++++ ...|...+- .+.
T Consensus 30 ~g~s~~eIA~~l~is-~~tV~~~~~-r~~ 56 (79)
T 1x3u_A 30 AGLPNKSIAYDLDIS-PRTVEVHRA-NVM 56 (79)
T ss_dssp TTCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 457999999999997 888887665 543
No 176
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=25.41 E-value=80 Score=25.95 Aligned_cols=56 Identities=18% Similarity=0.185 Sum_probs=42.8
Q ss_pred HHHHhhhhcc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 96 KQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 96 r~LtLlsL~~-~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
|-+.|+.+.. ....++..+|++.++++ ...+=.++- .....|+|.- |...+...+.
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~-ksT~~RlL~-tL~~~G~v~~--~~~~~~Y~lG 63 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMN-KATVYRLMS-ELQEAGFVEQ--VEGARSYRLG 63 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSC-HHHHHHHHH-HHHHTTSEEE--CSSSSEEEEC
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--cCCCCcEEcC
Confidence 4467777655 35789999999999998 888888888 7888999974 4554665543
No 177
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=25.22 E-value=1.1e+02 Score=22.78 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=26.3
Q ss_pred HHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcC
Q 027271 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTG 139 (225)
Q Consensus 98 LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~g 139 (225)
+.++.+...+ .||.+|++.++++ ...|.. +- +++..|
T Consensus 66 ~eV~klL~~G--~syreIA~~~g~S-~aTIsR-v~-r~L~~g 102 (119)
T 3kor_A 66 LQVAKMIKQG--YTYATIEQESGAS-TATISR-VK-RSLQWG 102 (119)
T ss_dssp HHHHHHHHHT--CCHHHHHHHHCCC-HHHHHH-HH-HHHHSS
T ss_pred HHHHHHHHcC--CCHHHHHHHHCCC-HHHHHH-HH-HHHhcC
Confidence 4455544444 9999999999996 888876 45 565544
No 178
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=25.19 E-value=1.2e+02 Score=21.79 Aligned_cols=36 Identities=14% Similarity=0.072 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 027271 168 GSMIQTLSNWLTTSDNLLISIQEKIKWADSMNEMDK 203 (225)
Q Consensus 168 ~~L~~~L~~W~~~v~~~l~~ie~~~~~~~~~~~~~~ 203 (225)
+.|...+..|+..|+.+...++.+++.++.+...-+
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 458889999999999999999999998887765543
No 179
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=25.09 E-value=52 Score=23.81 Aligned_cols=43 Identities=7% Similarity=0.091 Sum_probs=30.6
Q ss_pred HHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 97 QLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 97 ~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
++.++.-+.. ..+|+.+.++..+| |..+++.|.= ++..|=+.|
T Consensus 39 K~~VV~~v~~-g~lS~~EAa~ry~I-s~~ei~~W~r--~y~~~G~~a 81 (101)
T 2oa4_A 39 KIAVVRGVIY-GLITLAEAKQTYGL-SDEEFNSWVS--ALAEHGKDA 81 (101)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHTTCS-SHHHHHHHHH--HHHCCCSSS
T ss_pred HHHHHHHHHh-CCCCHHHHHHHhCC-CHHHHHHHHH--HHHHHhHHH
Confidence 4455554333 36999999999999 5999999954 565554433
No 180
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=24.87 E-value=55 Score=19.70 Aligned_cols=21 Identities=19% Similarity=0.455 Sum_probs=17.8
Q ss_pred cChHHHHHHcCCCChHHHHHHH
Q 027271 110 LPYDELMEELDVTNVRELEDFL 131 (225)
Q Consensus 110 isy~~I~~~L~i~~~~evE~lv 131 (225)
.|+.+||+.++++ ...|-.++
T Consensus 32 ~s~~eIA~~lgis-~~TV~~~l 52 (55)
T 2x48_A 32 YTVQQIANALGVS-ERKVRRYL 52 (55)
T ss_dssp CCHHHHHHHHTSC-HHHHHHHH
T ss_pred CCHHHHHHHHCcC-HHHHHHHH
Confidence 5999999999997 88877664
No 181
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=24.83 E-value=58 Score=24.60 Aligned_cols=27 Identities=19% Similarity=0.341 Sum_probs=23.1
Q ss_pred cccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 108 KVLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 108 ~~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
...||.+||+.+|++ ...|...+- .|.
T Consensus 155 ~g~s~~EIA~~lgis-~~tV~~~l~-ra~ 181 (194)
T 1or7_A 155 DGLSYEEIAAIMDCP-VGTVRSRIF-RAR 181 (194)
T ss_dssp TCCCHHHHHHHTTSC-HHHHHHHHH-HHH
T ss_pred cCCCHHHHHHHHCCC-HHHHHHHHH-HHH
Confidence 458999999999997 999998877 664
No 182
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.72 E-value=1.2e+02 Score=18.99 Aligned_cols=23 Identities=13% Similarity=0.195 Sum_probs=18.3
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI 132 (225)
..++.+||+.++++ ...|...+=
T Consensus 26 g~s~~eIA~~l~is-~~tV~~~~~ 48 (74)
T 1fse_A 26 DKTTKEIASELFIS-EKTVRNHIS 48 (74)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCCC-HHHHHHHHH
Confidence 35999999999997 877776544
No 183
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=24.70 E-value=53 Score=21.82 Aligned_cols=38 Identities=13% Similarity=0.313 Sum_probs=26.2
Q ss_pred hhhhccCCcccChHHHHHHcC-----CCChHHHHHHHHHHhHhcC
Q 027271 100 VLTLAETNKVLPYDELMEELD-----VTNVRELEDFLINECMYTG 139 (225)
Q Consensus 100 LlsL~~~~~~isy~~I~~~L~-----i~~~~evE~lvI~~AI~~g 139 (225)
|+...+..+.++|++|.+.+. + +.+++|.++- ..-..|
T Consensus 14 Li~~gK~~G~lTy~EI~d~l~~~~~~l-d~e~id~i~~-~L~~~g 56 (72)
T 2k6x_A 14 LISLGKKKGYITYEDIDKAFPPDFEGF-DTNLIERIHE-ELEKHG 56 (72)
T ss_dssp HHHHHHHHSSCBHHHHHHHCSCSCSSC-CHHHHHHHHH-HHHHTC
T ss_pred HHHHHhHcCCccHHHHHHhCccccccC-CHHHHHHHHH-HHHHCC
Confidence 555666666899999999985 4 3788888754 333344
No 184
>2l16_A SEC-independent protein translocase protein tatad; membrane protein, protein transport; NMR {Bacillus subtilis}
Probab=23.77 E-value=58 Score=22.39 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=25.8
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027271 161 DLRPGQLGSMIQTLSNWLTTSDNLLISIQEK 191 (225)
Q Consensus 161 ~~~~~q~~~L~~~L~~W~~~v~~~l~~ie~~ 191 (225)
.|+++.++.+...+.+|.....+....+++.
T Consensus 20 vfGpkkLP~l~r~lGk~ir~fK~~~~~~~~e 50 (78)
T 2l16_A 20 IFGPSKLPEIGRAAGRTLLEFKSATKSLVSG 50 (78)
T ss_dssp HSCTTTHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred eeCccHhHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4789999999999999999888877666543
No 185
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=23.32 E-value=90 Score=25.27 Aligned_cols=55 Identities=5% Similarity=0.045 Sum_probs=39.3
Q ss_pred HHHHhhhhc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEE
Q 027271 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEV 154 (225)
Q Consensus 96 r~LtLlsL~-~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V 154 (225)
|-+.++.+. .....++..+|++.++++ ...+=.++- .....|+|.- |...+...+
T Consensus 7 r~l~iL~~l~~~~~~~s~~ela~~~gl~-~stv~r~l~-~L~~~G~v~~--~~~~~~Y~l 62 (241)
T 2xrn_A 7 RAASIMRALGSHPHGLSLAAIAQLVGLP-RSTVQRIIN-ALEEEFLVEA--LGPAGGFRL 62 (241)
T ss_dssp HHHHHHHHHHTCTTCEEHHHHHHHTTSC-HHHHHHHHH-HHHTTTSEEE--CGGGCEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE--eCCCCeEEE
Confidence 335555543 444579999999999998 888888877 7888999976 333444443
No 186
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=23.32 E-value=78 Score=18.55 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=19.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHhc
Q 027271 192 IKWADSMNEMDKKHRKDLEEKVEEAKKSL 220 (225)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (225)
+++.....++...+..+++.+|+..|+-+
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 34455556666777777888888777654
No 187
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=23.09 E-value=1.2e+02 Score=24.88 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHhhhhcc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 96 KQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 96 r~LtLlsL~~-~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
|-+.++.+.. ....++..+|++.++++ ...+=.++- .....|+|.-
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~gl~-kstv~r~l~-tL~~~G~v~~ 70 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGTKLP-KTTVVRLVA-TMCARSVLTS 70 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEEE
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEE
Confidence 4466666543 45689999999999998 888888777 6778899876
No 188
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=23.00 E-value=27 Score=26.16 Aligned_cols=22 Identities=23% Similarity=0.493 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 027271 125 RELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 125 ~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..||+.+| .+...|-|.|+|++
T Consensus 67 ~~VE~~LI-~lAq~Gqi~~kIte 88 (118)
T 2cru_A 67 KAVENYLI-QMARYGQLSEKVSE 88 (118)
T ss_dssp HHHHHHHH-HHHHHTCCCSCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 89999999999986
No 189
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.58 E-value=1.4e+02 Score=23.24 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=30.6
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEE
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGK 144 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gk 144 (225)
..+...|+.+|+++++++ ...|-..+- ..-..|+|...
T Consensus 20 ~~g~~~s~~eia~~lgl~-~~tv~~~l~-~Le~~G~i~~~ 57 (196)
T 3k2z_A 20 KNGYPPSVREIARRFRIT-PRGALLHLI-ALEKKGYIERK 57 (196)
T ss_dssp HHSSCCCHHHHHHHHTSC-HHHHHHHHH-HHHHTTSEECC
T ss_pred HhCCCCCHHHHHHHcCCC-cHHHHHHHH-HHHHCCCEEec
Confidence 456689999999999998 557888777 67788988754
No 190
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=22.49 E-value=67 Score=21.71 Aligned_cols=26 Identities=8% Similarity=0.227 Sum_probs=21.0
Q ss_pred ccChHHHHHHcCCCChHHHHHHHHHHhH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLINECM 136 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI~~AI 136 (225)
-.++.+||+.++++ ...|...+- .+.
T Consensus 44 g~s~~eIA~~l~is-~~tV~~~l~-r~~ 69 (91)
T 2rnj_A 44 GYSNQEIASASHIT-IKTVKTHVS-NIL 69 (91)
T ss_dssp TCCTTHHHHHHTCC-HHHHHHHHH-HHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH-HHH
Confidence 47999999999997 888887765 543
No 191
>2kif_A O6-methylguanine-DNA methyltransferase; methods development, solution structure, DNA base repair methylguanine methyltransferase; NMR {Vibrio parahaemolyticus AQ3810} PDB: 2kim_A
Probab=22.12 E-value=56 Score=23.84 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=21.1
Q ss_pred HHHhhhhccCCcccChHHHHHHcCCC
Q 027271 97 QLTVLTLAETNKVLPYDELMEELDVT 122 (225)
Q Consensus 97 ~LtLlsL~~~~~~isy~~I~~~L~i~ 122 (225)
....+.-+..+++.||.+||+.++.|
T Consensus 8 V~~~l~~IP~G~v~TYg~iA~~~G~p 33 (108)
T 2kif_A 8 IFAVIHQIPKGKVSTYGEIAKMAGYP 33 (108)
T ss_dssp HHHHHTTCCTTCBEEHHHHHHHHTCT
T ss_pred HHHHHhcCCCCCcEeHHHHHHHhCCC
Confidence 34555556789999999999999986
No 192
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=22.11 E-value=1.2e+02 Score=21.09 Aligned_cols=48 Identities=8% Similarity=0.150 Sum_probs=36.4
Q ss_pred CcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE--EEecCCCCEEEEEe
Q 027271 107 NKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR--GKLDQLRRCFEVQF 156 (225)
Q Consensus 107 ~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~--gkIDq~~~~v~V~~ 156 (225)
+.-|+-.+|++.++++ ...|=..+= .....|+|. -.++..++.+++..
T Consensus 34 ~~gi~qkeLa~~~~l~-~~tvt~iLk-~LE~kglIkr~~~~~~~~rKvy~Ly 83 (91)
T 2dk5_A 34 NKGIWSRDVRYKSNLP-LTEINKILK-NLESKKLIKAVKSVAASKKKVYMLY 83 (91)
T ss_dssp TTCEEHHHHHHHTTCC-HHHHHHHHH-HHHHTTSEEEECCSSCSSCCEEEES
T ss_pred CCCcCHHHHHHHHCCC-HHHHHHHHH-HHHHCCCEEEecCCCCCCcEEEEEe
Confidence 4469999999999997 888887766 888899998 44444455666543
No 193
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=21.73 E-value=28 Score=25.96 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 027271 125 RELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 125 ~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..||+.+| .....|-|.|+||.
T Consensus 70 ~~VE~~li-~laq~Gql~~ki~e 91 (116)
T 2hvu_A 70 QAVETYLK-KLIATNNVTHKITE 91 (116)
T ss_dssp HHHHHHHH-HHHHHSCCSSCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 89999999999987
No 194
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=21.60 E-value=1.1e+02 Score=19.99 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=30.7
Q ss_pred cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 027271 105 ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (225)
Q Consensus 105 ~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~ 142 (225)
++++.+-.+.+++.++++ .++|=..+= +.-..|||+
T Consensus 21 ~sGGildI~~~a~kygV~-kdeV~~~Lr-rLe~KGLI~ 56 (59)
T 2xvc_A 21 NNGGFLDIEHFSKVYGVE-KQEVVKLLE-ALKNKGLIA 56 (59)
T ss_dssp HTTSEEEHHHHHHHHCCC-HHHHHHHHH-HHHHTTSEE
T ss_pred HcCCEEeHHHHHHHhCCC-HHHHHHHHH-HHHHCCCee
Confidence 578899999999999997 888887777 777788886
No 195
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=21.45 E-value=1.1e+02 Score=25.94 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=31.2
Q ss_pred HHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 027271 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (225)
Q Consensus 98 LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~ 142 (225)
..|+.+...++.+|..+|++.++++ ...|-.-+- ..-..|++.
T Consensus 8 ~~Il~~L~~~~~~s~~eLa~~l~vS-~~ti~r~l~-~L~~~G~~i 50 (321)
T 1bia_A 8 LKLIALLANGEFHSGEQLGETLGMS-RAAINKHIQ-TLRDWGVDV 50 (321)
T ss_dssp HHHHHHHTTSSCBCHHHHHHHHTSC-HHHHHHHHH-HHHHTTCCC
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCCC-HHHHHHHHH-HHHhCCCcE
Confidence 3444444677789999999999997 888876655 555567764
No 196
>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}
Probab=21.10 E-value=2.3e+02 Score=23.32 Aligned_cols=97 Identities=9% Similarity=0.004 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhHhcCccEEEecCCCCEEEEE-eeccC----CCCCCcHH--H--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027271 124 VRELEDFLINECMYTGIVRGKLDQLRRCFEVQ-FAAGR----DLRPGQLG--S--MIQTLSNWLTTSDNLLISIQEKIKW 194 (225)
Q Consensus 124 ~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~-~~~~R----~~~~~q~~--~--L~~~L~~W~~~v~~~l~~ie~~~~~ 194 (225)
.+.|..|+. + -.-.+++-.+=..++.++-. .+.+. .++..++. . +..+=.-+...++..+...+..+..
T Consensus 129 ~~~lr~~L~-~-~Gf~i~~E~lv~e~~k~Yeii~~~~~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~~il~~ 206 (244)
T 3gnl_A 129 AWQLREWSE-Q-NNWLITSEAILREDNKVYEIMVLAPSEKPVTWTKQEIFFGPCLLKEQSAIFKSKWRHEANTWQNIIQT 206 (244)
T ss_dssp HHHHHHHHH-H-HTEEEEEEEEEEETTEEEEEEEEEECSSCCCCCHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-H-CCCEEEEEEEEEECCEEEEEEEEEeCCCCCCCCHHHHHhCHHHHhcCCHHHHHHHHHHHHHHHHHHHh
Confidence 678888877 5 45556666655555555433 33221 22221111 0 1111112223333333333333444
Q ss_pred HHhhh---HHHHHHHHHHHHHHHHHHHhccc
Q 027271 195 ADSMN---EMDKKHRKDLEEKVEEAKKSLSH 222 (225)
Q Consensus 195 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 222 (225)
.+... +....+.++++++++.+++.+|.
T Consensus 207 l~~~~~~~~~~~~~~~~l~~~~~~i~e~~~~ 237 (244)
T 3gnl_A 207 ISNNQPVSTENQAKIRELEHKIALVEDVLKE 237 (244)
T ss_dssp HHTSSSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhhccccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 44333 34567788999999999998875
No 197
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=20.97 E-value=1.4e+02 Score=24.30 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=39.6
Q ss_pred HHHHhhhhc-cCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEEEE
Q 027271 96 KQLTVLTLA-ETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 96 r~LtLlsL~-~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~V~ 155 (225)
|-+.++.+. .....++..+|++.++++ ...+=.++- .....|+|.-. .+...+.
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-~L~~~G~v~~~----~~~Y~Lg 69 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEAGLS-RPAVRRILL-TLQKLGYVAGS----GGRWSLT 69 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHHTCC-HHHHHHHHH-HHHHTTSEEEE----TTEEEEC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEeC----CCEEEEc
Confidence 345555544 345679999999999998 888888877 77889999863 2555443
No 198
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=20.90 E-value=1e+02 Score=29.84 Aligned_cols=43 Identities=12% Similarity=0.205 Sum_probs=33.2
Q ss_pred HHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccE
Q 027271 98 LTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVR 142 (225)
Q Consensus 98 LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~ 142 (225)
.+++-+......+||++|++.++|+ ..++..-+- ..+..|++.
T Consensus 592 a~iLllFn~~~~~t~~ei~~~t~i~-~~~l~r~L~-~l~k~~iL~ 634 (760)
T 1ldj_A 592 MAILLQYNTEDAYTVQQLTDSTQIK-MDILAQVLQ-ILLKSKLLV 634 (760)
T ss_dssp HHHHHGGGSSSEEEHHHHHHHTCCC-HHHHHHHHH-HHHHTTTEE
T ss_pred HHHHHHhcCCCCcCHHHHHHHHCcC-HHHHHHHHH-HHHHCCcce
Confidence 3444445667799999999999998 888877766 667788875
No 199
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=20.77 E-value=2e+02 Score=19.23 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=34.8
Q ss_pred CcccChHHH----HHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCCEEE
Q 027271 107 NKVLPYDEL----MEELDVTNVRELEDFLINECMYTGIVRGKLDQLRRCFE 153 (225)
Q Consensus 107 ~~~isy~~I----~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~~v~ 153 (225)
...++..+| ++.++++ ...|=..|= .....|+|.-.-|.....+.
T Consensus 20 ~~~~~~~el~~~la~~l~is-~~tvs~~l~-~Le~~gli~r~~~~r~~~~~ 68 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMS-TATFYDAKK-FLIQEGFVKERQERGEKRLY 68 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCC-HHHHHHHHH-HHHHTTSEEEEEETTEEEEE
T ss_pred cCCcCHHHHHHHHHHHcCCC-HHHHHHHHH-HHHHCCCEEEEecCCceEEE
Confidence 457899999 8999997 888877766 77778999988887333333
No 200
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.64 E-value=85 Score=22.05 Aligned_cols=23 Identities=9% Similarity=0.169 Sum_probs=18.4
Q ss_pred ccChHHHHHHcCCCChHHHHHHHH
Q 027271 109 VLPYDELMEELDVTNVRELEDFLI 132 (225)
Q Consensus 109 ~isy~~I~~~L~i~~~~evE~lvI 132 (225)
-.++.+||+.|+|+ ...|...+-
T Consensus 49 G~s~~EIA~~L~iS-~~TV~~~l~ 71 (99)
T 1p4w_A 49 GFLVTEIAKKLNRS-IKTISSQKK 71 (99)
T ss_dssp TCCHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHCcC-HHHHHHHHH
Confidence 46899999999996 877776544
No 201
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=20.28 E-value=33 Score=25.95 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhHhcCccEEEecC
Q 027271 125 RELEDFLINECMYTGIVRGKLDQ 147 (225)
Q Consensus 125 ~evE~lvI~~AI~~gLI~gkIDq 147 (225)
..||+.+| .+...|-|.|+|++
T Consensus 70 ~~VE~~Li-~lAq~Gql~~kVsE 91 (127)
T 2jxn_A 70 QAVETYLK-KLIATNNVTHKITE 91 (127)
T ss_dssp HHHHHHHH-HHHHHSCCCSCBCH
T ss_pred HHHHHHHH-HHHHcCCCCCCcCH
Confidence 57999999 89999999999986
No 202
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=20.22 E-value=96 Score=25.52 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=32.0
Q ss_pred hhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEEEecCCCC
Q 027271 100 VLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRGKLDQLRR 150 (225)
Q Consensus 100 LlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~gkIDq~~~ 150 (225)
|+.+...++.++.++++..+|++ .++|...+= + +. .+ .+|...+
T Consensus 27 llr~la~Grpv~~~~LA~~~g~~-~~~v~~~L~-~-l~--~~--~~D~~G~ 70 (220)
T 3f2g_A 27 LLRELAKGRPVSRTTLAGILDWP-AERVAAVLE-Q-AT--ST--EYDKDGN 70 (220)
T ss_dssp HHHHHTTTSCBCHHHHHHHHTCC-HHHHHHHHH-H-CT--TC--EECTTSC
T ss_pred HHHHHhcCCCCCHHHHHHHhCcC-HHHHHHHHH-h-CC--cE--EECCCCC
Confidence 33333499999999999999997 999998765 4 42 22 3777544
No 203
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=20.16 E-value=97 Score=29.03 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=40.5
Q ss_pred HHHHhhhhccCCcccChHHHHHHcCCCChHHHHHHHHHHhHh-----cCccEEEecCCCCEEEEE
Q 027271 96 KQLTVLTLAETNKVLPYDELMEELDVTNVRELEDFLINECMY-----TGIVRGKLDQLRRCFEVQ 155 (225)
Q Consensus 96 r~LtLlsL~~~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~-----~gLI~gkIDq~~~~v~V~ 155 (225)
+.+.++.++..+..++-.++++.++++ ...+...+= +... .|+|++. .++..++
T Consensus 431 ~~~~iL~~l~~~~~it~~~la~~l~~s-~~~~~~~L~-~L~~~~~~~~glie~~----g~~y~L~ 489 (583)
T 3lmm_A 431 RIAIVLYLLFQRPFITIDVVARGLQSG-KEAARNALE-AARQTTVAGAPLIIAH----DGVWLLG 489 (583)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHTSC-HHHHHHHHH-HHHTCEETTEESEEEE----TTEEEEC
T ss_pred hHHHHHHHHHHCCCcCHHHHHHHhCcC-HHHHHHHHH-HHHhhhccccceEEEe----CCEEEEC
Confidence 345666766677789999999999997 889988776 6665 6788875 3555554
No 204
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=20.14 E-value=85 Score=17.93 Aligned_cols=21 Identities=19% Similarity=0.314 Sum_probs=17.4
Q ss_pred cChHHHHHHcCCCChHHHHHHH
Q 027271 110 LPYDELMEELDVTNVRELEDFL 131 (225)
Q Consensus 110 isy~~I~~~L~i~~~~evE~lv 131 (225)
.++.+|++.++|+ ...|-.|+
T Consensus 22 ~s~~~ia~~lgvs-~~Tv~r~l 42 (52)
T 1jko_C 22 HPRQQLAIIFGIG-VSTLYRYF 42 (52)
T ss_dssp CCHHHHHHTTSCC-HHHHHHHS
T ss_pred CCHHHHHHHHCCC-HHHHHHHH
Confidence 7999999999997 77776653
No 205
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=20.12 E-value=1.2e+02 Score=24.84 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=36.0
Q ss_pred HHHHhhhhcc-CCcccChHHHHHHcCCCChHHHHHHHHHHhHhcCccEE
Q 027271 96 KQLTVLTLAE-TNKVLPYDELMEELDVTNVRELEDFLINECMYTGIVRG 143 (225)
Q Consensus 96 r~LtLlsL~~-~~~~isy~~I~~~L~i~~~~evE~lvI~~AI~~gLI~g 143 (225)
|-+.++.+.. ....++..+|++.++++ ...+=.++- .....|+|.-
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~gl~-~stv~r~l~-tL~~~G~v~~ 68 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARATDLT-RATARRFLL-TLVELGYVAT 68 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHHTCC-HHHHHHHHH-HHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHCcC-HHHHHHHHH-HHHHCCCEEe
Confidence 4456666543 45679999999999998 888888877 6778899976
No 206
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.08 E-value=2.5e+02 Score=20.11 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=16.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHhcc
Q 027271 194 WADSMNEMDKKHRKDLEEKVEEAKKSLS 221 (225)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (225)
.||++.....+.+..++.++...+..|+
T Consensus 66 EAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 66 EANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5566665555555556666555555543
Done!