BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027272
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2Q16|A Chain A, Structure Of The E. Coli Inosine Triphosphate
           Pyrophosphatase Rgdb In Complex With Itp
 pdb|2Q16|B Chain B, Structure Of The E. Coli Inosine Triphosphate
           Pyrophosphatase Rgdb In Complex With Itp
          Length = 219

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 10/37 (27%)

Query: 76  FDCSMVYLRQKEDPWNSIFAG----------AATGGF 102
           F C +VYLR  EDP   +  G          A TGGF
Sbjct: 138 FHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGF 174


>pdb|2PYU|A Chain A, Structure Of The E. Coli Inosine Triphosphate
           Pyrophosphatase Rgdb In Complex With Imp
          Length = 219

 Score = 28.5 bits (62), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 10/37 (27%)

Query: 76  FDCSMVYLRQKEDPWNSIFAG----------AATGGF 102
           F C +VYLR  EDP   +  G          A TGGF
Sbjct: 138 FHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGF 174


>pdb|1K7K|A Chain A, Crystal Structure Of Rdgb- Inosine Triphosphate
           Pyrophosphatase From E. Coli
          Length = 221

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 10/37 (27%)

Query: 76  FDCSMVYLRQKEDPWNSIFAG----------AATGGF 102
           F C +VYLR  EDP   +  G          A TGGF
Sbjct: 140 FHCVLVYLRHAEDPTPLVCHGSWPGVITREPAGTGGF 176


>pdb|2EUA|A Chain A, Structure And Mechanism Of Menf, The Menaquinone-Specific
           Isochorismate Synthase From Escherichia Coli
 pdb|2EUA|B Chain B, Structure And Mechanism Of Menf, The Menaquinone-Specific
           Isochorismate Synthase From Escherichia Coli
 pdb|3BZM|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
           Isochorismate Synthase, Menf
 pdb|3BZN|A Chain A, Crystal Structure Of Open Form Of Menaquinone-Specific
           Isochorismate Synthase, Menf
          Length = 431

 Score = 26.9 bits (58), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 3/40 (7%)

Query: 94  FAGAATGGFLSMRQG-LGASARSAVFGGVLLALIEGAGIM 132
           +AG+A  G+LS++Q     S RSA   G ++ L  GAGI+
Sbjct: 368 YAGSA--GYLSLQQSEFCVSLRSAKISGNVVRLYAGAGIV 405


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,013,429
Number of Sequences: 62578
Number of extensions: 160989
Number of successful extensions: 291
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 4
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)