Query 027272
Match_columns 225
No_of_seqs 163 out of 649
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 12:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027272.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/027272hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2imja1 d.17.4.23 (A:5-159) Hy 15.0 15 0.0011 28.1 -0.2 17 76-92 12-28 (155)
2 d1ei5a1 b.61.3.1 (A:336-417) D 8.6 54 0.004 22.1 1.0 11 185-195 9-19 (82)
3 d2ffta1 g.88.1.1 (A:2-84) Thyl 6.5 1.6E+02 0.011 19.7 2.6 14 182-195 69-82 (83)
4 d1t5ja_ a.209.1.1 (A:) Hypothe 5.0 2.5E+02 0.019 21.1 3.6 30 77-106 242-272 (301)
5 d2o35a1 a.293.1.1 (A:2-80) Hyp 4.8 1.4E+02 0.01 19.9 1.5 19 74-92 14-32 (79)
6 d1kqfb2 f.23.22.1 (B:246-290) 4.5 3.8E+02 0.027 15.8 3.4 26 104-129 6-32 (45)
7 d2ciwa1 a.39.3.1 (A:0-119) Clo 4.4 1.1E+02 0.0078 21.9 0.6 9 4-12 23-31 (120)
8 d1vpua_ g.34.1.1 (A:) HIV-1 VP 4.4 1.4E+02 0.01 17.9 1.1 16 76-91 3-19 (45)
9 d1hvwa_ g.3.6.2 (A:) Atracotox 4.2 1.2E+02 0.0089 15.9 0.6 8 7-14 4-11 (26)
10 d2hdca_ a.4.5.14 (A:) Genesis 3.5 2.2E+02 0.016 19.2 1.7 22 72-93 28-50 (97)
No 1
>d2imja1 d.17.4.23 (A:5-159) Hypothetical protein PFL3262 {Pseudomonas fluorescens [TaxId: 294]}
Probab=15.02 E-value=15 Score=28.07 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.2
Q ss_pred HHhHHHhhhccCChhHH
Q 027272 76 FDCSMVYLRQKEDPWNS 92 (225)
Q Consensus 76 ~ec~l~~~RgKdD~wNs 92 (225)
.|.+++++|--+|.||+
T Consensus 12 ~etA~~KVr~AEdaWNs 28 (155)
T d2imja1 12 RESAIEKIRLAEDGWNS 28 (155)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 47889999999999997
No 2
>d1ei5a1 b.61.3.1 (A:336-417) D-aminopeptidase, middle and C-terminal domains {Ochrobactrum anthropi [TaxId: 529]}
Probab=8.60 E-value=54 Score=22.07 Aligned_cols=11 Identities=45% Similarity=1.425 Sum_probs=8.7
Q ss_pred CCccccccCCC
Q 027272 185 SSWFGGWFGGG 195 (225)
Q Consensus 185 ~~~~~~~f~~~ 195 (225)
.||||.|....
T Consensus 9 ~~WfGsWLd~E 19 (82)
T d1ei5a1 9 SAWFGSWLDDE 19 (82)
T ss_dssp GGGCEEEECTT
T ss_pred cchhhcccCCC
Confidence 67999998644
No 3
>d2ffta1 g.88.1.1 (A:2-84) Thylakoid soluble phosphoprotein TSP9 {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=6.50 E-value=1.6e+02 Score=19.71 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=10.5
Q ss_pred CCCCCccccccCCC
Q 027272 182 DSDSSWFGGWFGGG 195 (225)
Q Consensus 182 ~~~~~~~~~~f~~~ 195 (225)
...++-|||||.+|
T Consensus 69 ~~~~~gfgglfakk 82 (83)
T d2ffta1 69 NGNGGVFGGLFAKK 82 (83)
T ss_dssp CCSCCSSSSSSCCC
T ss_pred ccCCCcccceeecC
Confidence 34467899999876
No 4
>d1t5ja_ a.209.1.1 (A:) Hypothetical protein MJ1187 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.01 E-value=2.5e+02 Score=21.11 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=13.6
Q ss_pred HhHHHhhhccCCh-hHHHHHHHHHHhhhhcc
Q 027272 77 DCSMVYLRQKEDP-WNSIFAGAATGGFLSMR 106 (225)
Q Consensus 77 ec~l~~~RgKdD~-wNsiiAG~aTGail~~r 106 (225)
++....++--.|. -|+.+.|++.|+.++..
T Consensus 242 ~ai~~av~~GgDtdt~aai~Gal~GA~~G~~ 272 (301)
T d1t5ja_ 242 EGMLKCINAGGDTDSLASMYGAMAGAYYGFK 272 (301)
T ss_dssp HHHHHHHTSCBSHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhChh
Confidence 3344444433332 25555555555555543
No 5
>d2o35a1 a.293.1.1 (A:2-80) Hypothetical protein SMc04008 {Rhizobium meliloti [TaxId: 382]}
Probab=4.79 E-value=1.4e+02 Score=19.90 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=16.2
Q ss_pred HhHHhHHHhhhccCChhHH
Q 027272 74 STFDCSMVYLRQKEDPWNS 92 (225)
Q Consensus 74 s~~ec~l~~~RgKdD~wNs 92 (225)
..|+-.++++|.+.|.-|=
T Consensus 14 aaFrrL~~HL~~r~dVQNI 32 (79)
T d2o35a1 14 AVFRRLLEHLRERSDVQNI 32 (79)
T ss_dssp HHHHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHHHHhCccchhh
Confidence 4678899999999999885
No 6
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=4.51 E-value=3.8e+02 Score=15.77 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=14.8
Q ss_pred hcccC-hhHHHHHHHHHHHHHHHHHHH
Q 027272 104 SMRQG-LGASARSAVFGGVLLALIEGA 129 (225)
Q Consensus 104 ~~r~G-~~a~~~sAl~Gga~~al~ega 129 (225)
.+.+| .|..+..++.+.++.+++.+.
T Consensus 6 ~lWKgv~Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 6 SLWKGALKPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhh
Confidence 34455 355555566666666666655
No 7
>d2ciwa1 a.39.3.1 (A:0-119) Cloroperoxidase {Fungus (Caldariomyces fumago) [TaxId: 5474]}
Probab=4.39 E-value=1.1e+02 Score=21.88 Aligned_cols=9 Identities=67% Similarity=1.520 Sum_probs=7.1
Q ss_pred CCCCCCCCC
Q 027272 4 PETSREPCP 12 (225)
Q Consensus 4 ~~~~r~pCp 12 (225)
|...|.|||
T Consensus 23 p~D~RgPCP 31 (120)
T d2ciwa1 23 PTDSRAPCP 31 (120)
T ss_dssp TTCCCCSCH
T ss_pred CCCccCCCh
Confidence 567888888
No 8
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=4.36 E-value=1.4e+02 Score=17.86 Aligned_cols=16 Identities=25% Similarity=0.308 Sum_probs=10.6
Q ss_pred HHhHHHhhhcc-CChhH
Q 027272 76 FDCSMVYLRQK-EDPWN 91 (225)
Q Consensus 76 ~ec~l~~~RgK-dD~wN 91 (225)
+++.++++|.+ +|.=|
T Consensus 3 IdrLi~RIrERAEDSGN 19 (45)
T d1vpua_ 3 IDRLIDRITERAEDSGN 19 (45)
T ss_dssp HHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHcccCCC
Confidence 46677788775 66555
No 9
>d1hvwa_ g.3.6.2 (A:) Atracotoxin-hvI (versutoxin) {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=4.15 E-value=1.2e+02 Score=15.85 Aligned_cols=8 Identities=50% Similarity=1.128 Sum_probs=5.4
Q ss_pred CCCCCCch
Q 027272 7 SREPCPDR 14 (225)
Q Consensus 7 ~r~pCp~r 14 (225)
+..|||+.
T Consensus 4 sgqpcpyn 11 (26)
T d1hvwa_ 4 SGQPCPYN 11 (26)
T ss_dssp TTSBCSST
T ss_pred CCCcCCCC
Confidence 56778764
No 10
>d2hdca_ a.4.5.14 (A:) Genesis {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.52 E-value=2.2e+02 Score=19.16 Aligned_cols=22 Identities=27% Similarity=0.226 Sum_probs=10.6
Q ss_pred HHHhHHhHHHhhhccC-ChhHHH
Q 027272 72 LFSTFDCSMVYLRQKE-DPWNSI 93 (225)
Q Consensus 72 lfs~~ec~l~~~RgKd-D~wNsi 93 (225)
+|..++.-.-.+|... .|-|+|
T Consensus 28 IY~~i~~~fpyfr~~~~gWkNSI 50 (97)
T d2hdca_ 28 ICEFISNRFPYYREKFPAWQNSI 50 (97)
T ss_dssp HHHHHHHHCHHHHHHCSSHHHHH
T ss_pred HHHHHHHhCccccCCCCCchhhh
Confidence 3444444444556543 344554
Done!