Query 027273
Match_columns 225
No_of_seqs 169 out of 456
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 07:29:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00136 eukaryotic translatio 100.0 4.5E-78 9.7E-83 533.1 29.0 225 1-225 12-247 (247)
2 KOG3185 Translation initiation 100.0 5.5E-72 1.2E-76 478.1 20.6 224 2-225 13-245 (245)
3 COG1976 TIF6 Translation initi 100.0 3.3E-71 7.3E-76 478.0 23.0 200 1-204 13-221 (222)
4 PF01912 eIF-6: eIF-6 family; 100.0 2.9E-67 6.4E-72 452.0 11.4 181 1-184 10-199 (199)
5 cd00527 IF6 Ribosome anti-asso 100.0 7.3E-60 1.6E-64 412.0 26.2 201 1-203 11-220 (220)
6 PRK04046 translation initiatio 100.0 3.4E-59 7.3E-64 408.1 26.4 202 1-206 12-222 (222)
7 TIGR00323 eIF-6 translation in 100.0 6.7E-58 1.4E-62 398.5 24.5 198 1-204 9-215 (215)
8 smart00654 eIF6 translation in 100.0 1.9E-55 4.1E-60 379.4 22.6 182 1-184 10-200 (200)
9 smart00654 eIF6 translation in 100.0 6.4E-48 1.4E-52 332.6 22.0 173 30-206 2-177 (200)
10 PRK04046 translation initiatio 100.0 9.6E-45 2.1E-49 317.1 22.9 175 28-206 2-177 (222)
11 cd00527 IF6 Ribosome anti-asso 100.0 3.4E-39 7.4E-44 281.9 19.8 155 1-158 55-220 (220)
12 TIGR00323 eIF-6 translation in 100.0 1.4E-38 3.1E-43 277.2 19.4 151 1-158 53-214 (215)
13 PF01912 eIF-6: eIF-6 family; 100.0 2E-34 4.3E-39 248.5 10.2 127 79-206 6-176 (199)
14 COG1976 TIF6 Translation initi 100.0 5E-33 1.1E-37 240.8 15.6 127 79-206 9-178 (222)
15 PTZ00136 eukaryotic translatio 100.0 3.1E-31 6.6E-36 235.0 16.8 127 79-206 8-181 (247)
16 KOG3185 Translation initiation 99.9 3.2E-22 6.9E-27 172.1 12.4 127 79-206 8-181 (245)
17 COG3836 HpcH 2,4-dihydroxyhept 52.0 23 0.0005 32.3 4.3 160 1-166 18-211 (255)
18 PRK04323 hypothetical protein; 51.5 74 0.0016 24.7 6.5 67 84-154 10-78 (91)
19 cd01972 Nitrogenase_VnfE_like 48.3 41 0.0009 31.9 5.7 85 104-206 182-267 (426)
20 cd01974 Nitrogenase_MoFe_beta 41.7 94 0.002 29.6 7.0 50 139-206 230-279 (435)
21 PF02274 Amidinotransf: Amidin 39.0 2.7E+02 0.0058 24.4 9.1 110 52-163 137-259 (281)
22 TIGR01279 DPOR_bchN light-inde 38.6 80 0.0017 29.9 6.0 81 104-206 168-251 (407)
23 COG2052 Uncharacterized protei 36.9 33 0.00072 26.2 2.5 57 84-143 10-67 (89)
24 CHL00073 chlN photochlorophyll 35.8 58 0.0013 32.0 4.7 95 103-224 207-305 (457)
25 PF09419 PGP_phosphatase: Mito 35.3 54 0.0012 27.9 3.9 34 86-121 80-113 (168)
26 CHL00123 rps6 ribosomal protei 33.2 70 0.0015 24.5 3.8 67 139-206 12-87 (97)
27 PLN02591 tryptophan synthase 32.5 1.8E+02 0.0039 26.1 6.9 112 45-189 105-220 (250)
28 cd01965 Nitrogenase_MoFe_beta_ 27.9 2.1E+02 0.0046 27.1 6.9 50 139-206 226-275 (428)
29 TIGR03380 agmatine_aguA agmati 27.7 2.7E+02 0.0059 26.4 7.6 60 98-160 122-193 (357)
30 PRK14548 50S ribosomal protein 25.7 1.3E+02 0.0029 22.8 4.1 52 95-168 4-57 (84)
31 PF02274 Amidinotransf: Amidin 23.6 4.2E+02 0.009 23.2 7.6 142 16-158 35-208 (281)
32 COG0360 RpsF Ribosomal protein 23.0 1.3E+02 0.0027 24.1 3.8 58 139-206 7-82 (112)
33 COG0309 HypE Hydrogenase matur 22.6 1.6E+02 0.0035 28.0 4.9 72 86-164 50-128 (339)
34 PRK10558 alpha-dehydro-beta-de 21.3 57 0.0012 29.2 1.7 105 26-131 71-184 (256)
35 TIGR03239 GarL 2-dehydro-3-deo 20.9 1.1E+02 0.0024 27.3 3.4 102 26-127 64-173 (249)
36 PRK13111 trpA tryptophan synth 20.3 3.9E+02 0.0084 24.0 6.8 111 47-191 118-232 (258)
No 1
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=100.00 E-value=4.5e-78 Score=533.15 Aligned_cols=225 Identities=71% Similarity=1.124 Sum_probs=220.4
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
+||||+++||+||| ++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|+++||++||++
T Consensus 12 ~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~d~ 91 (247)
T PTZ00136 12 DIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNSLPDS 91 (247)
T ss_pred cEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHhCcCC
Confidence 59999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|+++++|++|+|||++|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+||||||+++++|++
T Consensus 92 v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tIag~~lVGs~~v~Nn~G~LVhP~~s~ee~~ 171 (247)
T PTZ00136 92 VKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTIAGNVLVGTYCVFTNQGGLVHPKTSVQEMD 171 (247)
T ss_pred ccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEecCCceEEEEEEEeCcEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC--CCCchhHHHHHHHhhhhcC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE--AQPNAIVDEMRKSLIDSYV 225 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~--~~~~~~~~~~~~~~~~~~~ 225 (225)
+|+|+||||+.+||||+|+++||||++|||||++|||+||++|+++||++||++. ..+..+..+||++|||++.
T Consensus 172 ~i~d~L~V~v~~gTVn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T PTZ00136 172 ELSSLLQVPLVAGTVNRGSDVIGAGLVVNDWAAFCGMDTTATEISVIERIFKLRRAGGKEGNDLQKLRSSLIDTLA 247 (247)
T ss_pred HHHHHhCCcEEEeeecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCCCcccCCchhhHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999999988 5566688999999999974
No 2
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.5e-72 Score=478.13 Aligned_cols=224 Identities=79% Similarity=1.205 Sum_probs=221.5
Q ss_pred eeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCe
Q 027273 2 ICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQV 72 (225)
Q Consensus 2 IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v 72 (225)
||+|.++||.||| |+.||++|++.+|+++|+|+|+|+||+||+||+||||||+++|||||+|||++|||.+
T Consensus 13 iGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnSLPd~V 92 (245)
T KOG3185|consen 13 IGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNSLPDEV 92 (245)
T ss_pred eeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhcCCcce
Confidence 8999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHH
Q 027273 73 VVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDE 152 (225)
Q Consensus 73 ~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~ 152 (225)
.++|++||++|+||.|+|||++||||||+++|++++|+|+|+|||+|.+||+.++|||||+.+|+|++|||.++.|++++
T Consensus 93 ~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqtia~n~LvGsyc~lsnqG~lVhp~Ts~e~q~E 172 (245)
T KOG3185|consen 93 VIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTIAQNSLVGSYCALSNQGGLVHPRTSVEDQDE 172 (245)
T ss_pred eeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecccCCceeeeeEEEcCCCceecCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhcC
Q 027273 153 LSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSYV 225 (225)
Q Consensus 153 l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~~ 225 (225)
|+.+|+||+..||+|+|+..+|+|+++|||-+++|.+||..||..||.+|++.+++|+.+..+||++|||++.
T Consensus 173 ls~LlqVplVAGTvNrGS~vi~aGmvvNDw~af~G~dTTa~ElsViesiFkL~~aqp~~i~~~~R~~lid~~~ 245 (245)
T KOG3185|consen 173 LSSLLQVPLVAGTVNRGSEVIGAGMVVNDWTAFCGLDTTATELSVIESIFKLNEAQPSSISSELRDTLIDSYV 245 (245)
T ss_pred HHHHhccceeeeeecCCceeeecceEeeceeeeeccCCcchhHHHHHHHHhhcccCchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999998888899999999999874
No 3
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-71 Score=478.03 Aligned_cols=200 Identities=48% Similarity=0.686 Sum_probs=197.3
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
+||||+++||+||+ ++.|+|.|+ +|+++|+|+||+++|+|++|||||+|||+.++|+|+++||+ +++
T Consensus 13 ~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~--v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~--~~~ 88 (222)
T COG1976 13 NIGVYAKATESYALVPPGLDEKFVDVIREVLG--VPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKN--ALG 88 (222)
T ss_pred ceEEEEEecccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcc--cCC
Confidence 59999999999999 899999999 99999999999999999999999999999999999999998 678
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|.++++|+||+||.|+|||++||+||++++++.|.|+|+|||||+|++|||.++|||+++.||||+||||++|++|+|
T Consensus 89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtIag~~tVGsa~v~tnkG~LvhP~~s~~Ele 168 (222)
T COG1976 89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTIAGIPTVGSAGVLTNKGGLVHPETSDEELE 168 (222)
T ss_pred ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEecCccceeeEEEEecCcceeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v 204 (225)
+|+++||||+..||+|+|+++||+|+||||||++||.+||+|||.|||++|++
T Consensus 169 ~Lse~f~V~v~~GTvN~Gs~~VG~glVaNs~g~lvG~dTTgpEl~rIe~aLg~ 221 (222)
T COG1976 169 ELSELFGVPVDVGTVNFGSPYVGAGLVANSKGALVGEDTTGPELARIEDALGF 221 (222)
T ss_pred HHHHHhCeeEEEeeecCCCcceeeEEEEcCCceEEcCCCCCchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999984
No 4
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=2.9e-67 Score=451.99 Aligned_cols=181 Identities=54% Similarity=0.828 Sum_probs=157.9
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
.||||+++||+||| ++.|+++|+ +|+++|+|+||++||+|++||+||||||++++|+|+++||+++| +
T Consensus 10 ~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~--v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~-~ 86 (199)
T PF01912_consen 10 NIGVYARATNDYALVPPGVSEKFVSIIEEELD--VEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP-D 86 (199)
T ss_dssp -HHHHEEEESSEEEEETTS-HHHHHHHHHHHT--SEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS--T
T ss_pred CEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcC--CcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC-C
Confidence 48999999999999 899999999 99999999999999999999999999999999999999999999 9
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|+++++|+||+||+|+|||++|++||+++++++|.|+|+|||||++++||+.++|||++++||+|+||||+++++|++
T Consensus 87 v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~tia~~~~VGs~~v~tn~G~LvhP~~s~eEl~ 166 (199)
T PF01912_consen 87 VNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTIAGIKTVGSAAVATNKGGLVHPDASEEELE 166 (199)
T ss_dssp SEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--BTTBS-CCCSEEE-SSEEEE-TT--HHHHH
T ss_pred ceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEecCcccceeeEEEeCcEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceE
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 184 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~ 184 (225)
+|+++|+||+..||||+|+++||||++|||||+
T Consensus 167 ~l~~~l~v~~~~GTVN~Gs~~VgsGlvaN~~g~ 199 (199)
T PF01912_consen 167 ELEELLGVPVDIGTVNRGSPFVGSGLVANDKGA 199 (199)
T ss_dssp HHHHHHTSSEEE--BTTTBS-HHHHEEEESSEE
T ss_pred HHHHHhCCceeeeeecCCCCceeEEEEeccccC
Confidence 999999999999999999999999999999997
No 5
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=7.3e-60 Score=411.96 Aligned_cols=201 Identities=63% Similarity=0.934 Sum_probs=193.4
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
+||+|+++||+||| .+.|+|+|+ +++++++|+||++||+|++||+||+|||+.++|+|+++||+.|+.+
T Consensus 11 ~iGv~~~~~~~~~lvp~~~~~~~~~~i~e~L~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~ 88 (220)
T cd00527 11 NIGVFAKATNSYCLVPPGGDENFVSKFEEELG--VPVVRTTIGGSRLVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDE 88 (220)
T ss_pred CeEEEEEEeccEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCccceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCC
Confidence 59999999999999 889999999 9999999999999999999999999999999999999999998766
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
+.+.+...+.+++||++++||++||+||.++++.++.|+|.|+|+|++.+|++.+.+|+++++||+||||||+++++|++
T Consensus 89 V~v~~~~~~~s~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~ 168 (220)
T cd00527 89 VGVLRVKENLSALGNVILCNDHGALVHPDLSKEAEEIIEDVLGVEVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELE 168 (220)
T ss_pred eEEEEccccceeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEEccCcccceeEEEEeccEEEECCCCCHHHHH
Confidence 66655555555999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFK 203 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~ 203 (225)
.|+|+||||+.+||+|+|.++|||+++|||||++|||+||++|+++||++||
T Consensus 169 ~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~El~~ie~~l~ 220 (220)
T cd00527 169 ELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPELSRIEDALG 220 (220)
T ss_pred HHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999996
No 6
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=3.4e-59 Score=408.09 Aligned_cols=202 Identities=42% Similarity=0.643 Sum_probs=198.2
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
.||+|+++||+||| ++.|++.|+ +++++++|+||+++|+|++||+||+|+|+.++++|+++|++.| +
T Consensus 12 ~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L~--v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~~~l~e~L--~ 87 (222)
T PRK04046 12 NIGVYARATDDYALVPPDLDEKTVEKIEETLG--VEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEELELLKEAL--D 87 (222)
T ss_pred ceEEEEEEcCCEEEECCCCCHHHHHHHHHhcC--ceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHHHHHHHhc--C
Confidence 58999999999999 899999999 9999999999999999999999999999999999999999997 6
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|.+++.+++++||++++||++||+||+++++..+.|+|+|||||.+.+|++.++||+++++||+|++|||+++++|++
T Consensus 88 v~V~~~~~~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti~~~~~VGs~ivaNd~G~lv~p~~t~~ei~ 167 (222)
T PRK04046 88 LNVEVLPSKLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTIAGLKTVGSAGVVTNKGGLVHPDATDEELK 167 (222)
T ss_pred ceEEEEeccccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEecCCccceeeEEEEeCCEEEECCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
+|+++||||+.+||+|+|.++||||++|||||++|||+||++|+++||++|++.+
T Consensus 168 ~i~~~l~v~~~~gTvn~G~~~VGs~~van~~G~lvg~~tt~~El~~ie~~l~~~~ 222 (222)
T PRK04046 168 FLEDLFKVEVDIGTVNFGSPLVGSGLVANSKGAVVGSDTTGPELGRIEDALGFIE 222 (222)
T ss_pred HHHHHhCCceEEeEEcCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999999999999999753
No 7
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=6.7e-58 Score=398.45 Aligned_cols=198 Identities=56% Similarity=0.866 Sum_probs=194.2
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
+||+|+++||+||+ .+.|+|+|+ +++++++|+||++||+|+++|++|++||+..++++++.|++.
T Consensus 9 ~iGv~~~~~~~~~~vp~~~~~~~~~~~~e~l~--v~i~~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~---- 82 (215)
T TIGR00323 9 EIGVYAKVTEEYALVPVNGSENFYSAFEEELE--VPVLHTTIAGSSLVGAMTAGNSRGLLVPDQVLDHELDSLPDS---- 82 (215)
T ss_pred CEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhC--CcEEEEEEcCCcceeEEEEEcCCEEEECCCcCHHHHHhhHhh----
Confidence 59999999999999 888999999 999999999999999999999999999999999999999986
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|.+++++.+++||++++||++||+||.++++..+.|+|.|+++|++.+|++.+++|+++++||+||||||+++++|++
T Consensus 83 l~V~~i~t~i~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~ 162 (215)
T TIGR00323 83 LKVQRIEERLTALGNNILCNDYGALASPELDRDTEELISDVLGVEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQE 162 (215)
T ss_pred cCeEEEeeEEEeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCCcEEEEecccccccceEEEEeCcEEEECCCCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v 204 (225)
.|+|+||||+.+||+|+|.++|||++||||||++|||+||++|+++||++||+
T Consensus 163 ~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~El~~ie~~l~~ 215 (215)
T TIGR00323 163 ELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPELSIIEEALGL 215 (215)
T ss_pred HHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999985
No 8
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=1.9e-55 Score=379.40 Aligned_cols=182 Identities=71% Similarity=1.049 Sum_probs=179.6
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
+||+|+++||+||| ++.|++.|+ +++++|+|++|+++|+|++||+||+|||+.++|+|+++|+++|+++
T Consensus 10 ~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~i~~~L~d~ 87 (200)
T smart00654 10 NIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQHLRNSLPDS 87 (200)
T ss_pred ceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHHHHHhcCCC
Confidence 58999999999999 889999999 9999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|.+++.+++++||+++|||++||+||+++++.++.|+|+||||++++||+|.++|||.+++||+|+||||+++++|++
T Consensus 88 v~V~~~~~~~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi~G~~~VGs~~VannkG~lv~~~tt~~El~ 167 (200)
T smart00654 88 VEVQRVEERLTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTIAGNITVGSYCVVTNKGGLVHPDTSEEELK 167 (200)
T ss_pred eeEEEEccccccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEecCcccceEEEEEECCEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceE
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTA 184 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~ 184 (225)
+|+++|++|+..||+|+|+++||||++|||||+
T Consensus 168 ~ie~~l~v~~~~gTvN~G~~~vg~glvaN~~g~ 200 (200)
T smart00654 168 ELSELLGVPLVAGTVNFGSEVVGAGLVANDNGA 200 (200)
T ss_pred HHHHHhCCCcccceecCCCCceeeEEEEccccC
Confidence 999999999999999999999999999999996
No 9
>smart00654 eIF6 translation initiation factor 6.
Probab=100.00 E-value=6.4e-48 Score=332.57 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=167.7
Q ss_pred EEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHH
Q 027273 30 KTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEI 108 (225)
Q Consensus 30 ~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~ 108 (225)
+++|+||++||+|+++|+||+|||+.++++|+++|++.|+ ++|.++. .+++++||++++||++||+||.++++..+.
T Consensus 2 ~~~i~gs~~IGv~~~~n~~~~lvp~~~~~~~~~~i~e~L~--v~V~~~~i~~~~~iGnli~~N~~g~lv~~~~~~~el~~ 79 (200)
T smart00654 2 RLSFEGSPNIGVYIKLTNSYCLVPVGGDENFYSVIEEVLG--VPVVHTSIGGSRLIGRLTVGNSNGLLVPNTTTDQELQH 79 (200)
T ss_pred eEEEcCCcceeEEEEEeCCEEEECCCCCHHHHHHHHHhcC--CcEEEEecCCceeEEEEEEEcCCEEEeCCCCCHHHHHH
Confidence 7899999999999999999999999999999999999985 7888876 999999999999999999999999999999
Q ss_pred HhhhhC--ceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEE
Q 027273 109 IADVLG--VEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC 186 (225)
Q Consensus 109 I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lv 186 (225)
|++.|+ ++|.+.+.. .+.+|+++++||+||||||+++++|+|+|+|+||||+.+||+ +|.++|||+++|||||++|
T Consensus 80 i~~~L~d~v~V~~~~~~-~~avGn~iv~Nd~g~lvhp~~s~ee~~~i~d~L~V~v~~gTi-~G~~~VGs~~VannkG~lv 157 (200)
T smart00654 80 LRNSLPDSVEVQRVEER-LTALGNLILCNDHGALASPDLSKETEEIISDVLGVEVFRGTI-AGNITVGSYCVVTNKGGLV 157 (200)
T ss_pred HHHhcCCCeeEEEEccc-cccceeEEEEcCceEEECCCCCHHHHHHHHHHhCCeEEEEEe-cCcccceEEEEEECCEEEE
Confidence 999997 999888887 999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCCC
Q 027273 187 GSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 187 g~~TT~~El~~Ie~~l~v~~ 206 (225)
||+||++|+++||++|+++.
T Consensus 158 ~~~tt~~El~~ie~~l~v~~ 177 (200)
T smart00654 158 HPDTSEEELKELSELLGVPL 177 (200)
T ss_pred CCCCCHHHHHHHHHHhCCCc
Confidence 99999999999999999985
No 10
>PRK04046 translation initiation factor IF-6; Provisional
Probab=100.00 E-value=9.6e-45 Score=317.07 Aligned_cols=175 Identities=23% Similarity=0.305 Sum_probs=169.4
Q ss_pred EEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeE-EEeccCCCceeeEEEeeCcEEEEecCCChhHH
Q 027273 28 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVV-QRIEERLSALGNCIACNDHVALAHTDLDRETE 106 (225)
Q Consensus 28 vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v-~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~ 106 (225)
+++++|+||+.||+++++|++++|+|+.++++|+++||+.| ++++ +..-.+++++|+|+++||+++++||.++++..
T Consensus 2 i~~~~i~gs~~iG~~~~~n~~~~lvp~~~~~~~~~~i~~~L--~v~i~~~~i~gs~~iG~~i~~N~~g~lvp~~~~~~e~ 79 (222)
T PRK04046 2 IRRLSIFGSPNIGVYARATDDYALVPPDLDEKTVEKIEETL--GVEVVETTIAGSSLVGSLAAGNSNGILVPSIVLDEEL 79 (222)
T ss_pred cEEEEEcCCCceEEEEEEcCCEEEECCCCCHHHHHHHHHhc--CceEEEEEecCCcceEEEEEEcCceEEeCCCCCHHHH
Confidence 68999999999999999999999999999999999999998 4666 45568999999999999999999999999999
Q ss_pred HHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEE
Q 027273 107 EIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC 186 (225)
Q Consensus 107 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lv 186 (225)
+.|+|.|||+|+++++ +++++|+++++||+|+|+||+++++|++.|+|+||||+.++|+ +|.++|||+++|||||++|
T Consensus 80 ~~l~e~L~v~V~~~~~-~~~~vGn~i~~N~~G~lv~p~~~~ee~~~i~~~L~V~v~~~ti-~~~~~VGs~ivaNd~G~lv 157 (222)
T PRK04046 80 ELLKEALDLNVEVLPS-KLTALGNLILANDKGALVHPELSDEARKVIEDTLGVEVERGTI-AGLKTVGSAGVVTNKGGLV 157 (222)
T ss_pred HHHHHhcCceEEEEec-cccceEeEEEEcCcEEEECCCCCHHHHHHHHHhhCceEEEEec-CCccceeeEEEEeCCEEEE
Confidence 9999999999999999 9999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCCC
Q 027273 187 GSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 187 g~~TT~~El~~Ie~~l~v~~ 206 (225)
||+||++|+++|+++|+++.
T Consensus 158 ~p~~t~~ei~~i~~~l~v~~ 177 (222)
T PRK04046 158 HPDATDEELKFLEDLFKVEV 177 (222)
T ss_pred CCCCCHHHHHHHHHHhCCce
Confidence 99999999999999999985
No 11
>cd00527 IF6 Ribosome anti-association factor IF6 binds the large ribosomal subunit and prevents the two subunits from associating during translation initiation. IF6 comprises a family of translation factors that includes both eukaryotic (eIF6) and archeal (aIF6) members. All members of this family have a conserved pentameric fold referred to as a beta/alpha propeller. The eukaryotic IF6 members have a moderately conserved C-terminal extension which is not required for ribosomal binding, and may have an alternative function.
Probab=100.00 E-value=3.4e-39 Score=281.93 Aligned_cols=155 Identities=17% Similarity=0.226 Sum_probs=147.7
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
+||+|+++|++|+| .+.|++.|+.+++++++++.+| ++|.|++||+||+|||+.++|+|+++|++.|+.
T Consensus 55 ~IGv~~~~n~~~~lvp~~~~~~e~~~l~~~L~~~V~v~~~~~~~s-~iGnli~~Nd~g~lv~~~~~~~e~~~i~~~L~v- 132 (220)
T cd00527 55 LVGSLTVGNSNGLLLPHTTTDQELQHIRNSLPDEVGVLRVKENLS-ALGNVILCNDHGALVHPDLSKEAEEIIEDVLGV- 132 (220)
T ss_pred ceeEEEEEeCCEEEECCCCCHHHHHHHHHhcCCCeEEEEccccce-eeeeEEEEcCceEEeCCCCCHHHHHHHHHhcCC-
Confidence 58999999999999 7889999998999999999999 999999999999999999999999999999864
Q ss_pred eeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEee-cCceeeeeEEEEcCCeEEeCCCCCHHH
Q 027273 72 VVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTSIED 149 (225)
Q Consensus 72 v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s~ee 149 (225)
+|.+.+ .+.+++||+++|||++||+||+++++..+.|+|+||||+.++|+ +|+++|||.+++||+|+||||+++++|
T Consensus 133 -~V~~~~i~~~~avGn~iv~Nd~g~LvhP~~s~ee~~~i~d~L~V~v~~gTvN~G~~~VGs~~VannkG~lvg~~tt~~E 211 (220)
T cd00527 133 -EVFRGTIAGIKTVGSAGVLTNKGGLVHPKTSDEELEELSELFKVPVVAGTVNFGSQYVGAGLVANSKGAVVGSDTTGPE 211 (220)
T ss_pred -cEEEEEccCcccceeEEEEeccEEEECCCCCHHHHHHHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHH
Confidence 555555 56999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhhhcC
Q 027273 150 LDELSTLLQ 158 (225)
Q Consensus 150 l~~l~d~L~ 158 (225)
+++|+++||
T Consensus 212 l~~ie~~l~ 220 (220)
T cd00527 212 LSRIEDALG 220 (220)
T ss_pred HHHHHHHhC
Confidence 999999986
No 12
>TIGR00323 eIF-6 translation initiation factor eIF-6, putative. This model finds translation initiation factor eIF-6 of eukaryotes, which is a ribosome dissociation factor. It also finds a set of apparent archaeal orthologs, slightly shorter proteins not yet shown to act as initiation factors; these probably should be designated as translation initiation factor aIF-6, putative.
Probab=100.00 E-value=1.4e-38 Score=277.22 Aligned_cols=151 Identities=18% Similarity=0.246 Sum_probs=144.9
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
.||+|+++||+||+ .+.|+|.|+ |++++|+| +++|+|++||+||+|+|+.++|+|+++|++.|+
T Consensus 53 ~IGv~~~~n~~~~lvp~~~~~~~~~~l~e~l~--V~~i~t~i---~~iGnli~~Nd~G~lv~~~~~~~e~~~i~~~L~-- 125 (215)
T TIGR00323 53 LVGAMTAGNSRGLLVPDQVLDHELDSLPDSLK--VQRIEERL---TALGNNILCNDYGALASPELDRDTEELISDVLG-- 125 (215)
T ss_pred ceeEEEEEcCCEEEECCCcCHHHHHhhHhhcC--eEEEeeEE---EeeeeEEEEcCceEEeCCCCCHHHHHHHHHhcC--
Confidence 58999999999999 788989999 99999999 999999999999999999999999999999985
Q ss_pred eeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEee-cCceeeeeEEEEcCCeEEeCCCCCHHH
Q 027273 72 VVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI-AGNILVGSYCSFSNRGGLVHPHTSIED 149 (225)
Q Consensus 72 v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s~ee 149 (225)
++|.+++ .+.+++|+++++||++|||||+++++..+.|+|+||||+.++|| +|.++|||.+++||+|++|||+++++|
T Consensus 126 v~V~~~~i~~~~~vG~~~v~nN~G~lvhP~~s~ee~~~i~d~LgV~v~~gTin~G~~~VGs~~Vann~G~lv~~~tt~~E 205 (215)
T TIGR00323 126 VEVFRGTIAGLITVGSYAVVTNRGGLVHPQTSVQEQEELSSLLGVELVAGTVNRGTTVVGAGMVANSKGAVVGLDTTGPE 205 (215)
T ss_pred CcEEEEecccccccceEEEEeCcEEEECCCCCHHHHHHHHHHhCCcEEEEEecCCCCceeEEEEEECCEEEECCCCCHHH
Confidence 5677777 89999999999999999999999999999999999999999999 599999999999999999999999999
Q ss_pred HHHHhhhcC
Q 027273 150 LDELSTLLQ 158 (225)
Q Consensus 150 l~~l~d~L~ 158 (225)
+++|+++||
T Consensus 206 l~~ie~~l~ 214 (215)
T TIGR00323 206 LSIIEEALG 214 (215)
T ss_pred HHHHHHHhC
Confidence 999999997
No 13
>PF01912 eIF-6: eIF-6 family; InterPro: IPR002769 This family includes eukaryotic translation initiation factor 6 (eIF6) as well as presumed archaeal homologues. The assembly of 80S ribosomes requires joining of the 40S and 60S subunits, which is triggered by the formation of an initiation complex on the 40S subunit. This event is rate-limiting for translation, and depends on external stimuli and the status of the cell. Eukaryotic translation initiation factor 6 (eIF6) binds specifically to the free 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit ribosomes []. Furthermore, eIF6 interacts in the cytoplasm with RACK1, a receptor for activated protein kinase C (PKC). RACK1 is a major component of translating ribosomes, which harbour significant amounts of PKC. Loading 60S subunits with eIF6 caused a dose-dependent translational block and impairment of 80S formation, which are reversed by expression of RACK1 and stimulation of PKC in vivo and in vitro. PKC stimulation leads to eIF6 phosphorylation and its release, promoting 80S subunit formation. RACK1 provides a physical and functional link between PKC signalling and ribosome activation.; GO: 0043022 ribosome binding, 0042256 mature ribosome assembly; PDB: 4A19_J 4A1D_J 4A1B_J 4A18_J 1G61_A 2X7N_B 1G62_A.
Probab=100.00 E-value=2e-34 Score=248.49 Aligned_cols=127 Identities=28% Similarity=0.444 Sum_probs=111.0
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEc-----------------------
Q 027273 79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS----------------------- 135 (225)
Q Consensus 79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~N----------------------- 135 (225)
.+++++|+|+++||+|||+||+.++++.+.|++.|+||+++++|+|++++|+|+++|
T Consensus 6 ~gs~~IGvy~~~t~~~~lvp~~~~~~~~~~i~e~L~v~vv~t~I~gs~lvG~l~~GNsnGllvp~~~~d~El~~Lk~~~~ 85 (199)
T PF01912_consen 6 YGSPNIGVYARATNDYALVPPGVSEKFVSIIEEELDVEVVETTIAGSRLVGSLCVGNSNGLLVPSIITDEELEHLKESLP 85 (199)
T ss_dssp TTBS-HHHHEEEESSEEEEETTS-HHHHHHHHHHHTSEEEEE-BTTBS-HHHH-EEESSEEEEETT--HHHHHHHHHHS-
T ss_pred eCCCCEEEEEEEcCCEEEEcCCCCHHHHHHHHHhcCCcEEEEEecCcceEEEEEEEcCCEEEECCcCCHHHHHHHHhhCC
Confidence 589999999999999999999999999999999999999999999999999999997
Q ss_pred ---------------------CCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHH
Q 027273 136 ---------------------NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATE 194 (225)
Q Consensus 136 ---------------------n~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~E 194 (225)
|+||+|||++++++.|.|+|+||||+.++|+ +|.++|||.+++||+|++|||++|++|
T Consensus 86 ~v~V~~l~~k~tAlGN~Il~ND~~Alv~p~l~~e~~~~I~d~LgVeV~~~ti-a~~~~VGs~~v~tn~G~LvhP~~s~eE 164 (199)
T PF01912_consen 86 DVNVEVLPSKLTALGNLILANDKGALVHPELSKETIEIISDVLGVEVFRGTI-AGIKTVGSAAVATNKGGLVHPDASEEE 164 (199)
T ss_dssp TSEEEEE--SSS-HHHHEEE-SSEEEE-CCGGHHHHHHHHHHHTSEEEE--B-TTBS-CCCSEEE-SSEEEE-TT--HHH
T ss_pred CceEEEeCceeccccCEEEEcCcceEEcCCCCHHHHHHHHHhcCceEEEEEe-cCcccceeeEEEeCcEEEECCCCCHHH
Confidence 5669999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHhhCCCC
Q 027273 195 LSVIESVFKLRE 206 (225)
Q Consensus 195 l~~Ie~~l~v~~ 206 (225)
+++++++|+++.
T Consensus 165 l~~l~~~l~v~~ 176 (199)
T PF01912_consen 165 LEELEELLGVPV 176 (199)
T ss_dssp HHHHHHHHTSSE
T ss_pred HHHHHHHhCCce
Confidence 999999999985
No 14
>COG1976 TIF6 Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5e-33 Score=240.85 Aligned_cols=127 Identities=30% Similarity=0.461 Sum_probs=124.2
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEc-----------------------
Q 027273 79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFS----------------------- 135 (225)
Q Consensus 79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~N----------------------- 135 (225)
++++.||.|+.++|+||++||+.++++++.|+++|+|||++++|+|+++||+++++|
T Consensus 9 ~gs~~IGvy~~~t~~~~lv~~~~~e~~~~~i~e~L~v~vv~ttI~gS~lvG~l~~gNsnG~lvP~~~~d~El~~l~~~~~ 88 (222)
T COG1976 9 EGSPNIGVYAKATESYALVPPGLDEKFVDVIREVLGVPVVETTIAGSRLVGALTAGNSNGLLVPYGVRDEELRRLKNALG 88 (222)
T ss_pred cCCCceEEEEEecccEEEEcCCCCHHHHHHHHHHhCCcEEEEEecCceEEeEEEeecCCceEcCCcccHHHHHhhcccCC
Confidence 789999999999999999999999999999999999999999999999999999997
Q ss_pred --------------------CCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHH
Q 027273 136 --------------------NRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATEL 195 (225)
Q Consensus 136 --------------------n~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El 195 (225)
|+|||+||+++++..|.|+|+|||++.+||+ +|.+.|||..++||+|+||||+||++|+
T Consensus 89 v~V~~l~~k~nAlGN~Il~ND~~Alvhp~l~~~a~k~I~d~LgVev~rgtI-ag~~tVGsa~v~tnkG~LvhP~~s~~El 167 (222)
T COG1976 89 VEVLILPTKLNALGNLILANDKGALVHPDLSDEAEKEIEDVLGVEVVRGTI-AGIPTVGSAGVLTNKGGLVHPETSDEEL 167 (222)
T ss_pred ceEEEeCccccccccEEEecCceeEecCccCHHHHHHHHhhcceEEEEEEe-cCccceeeEEEEecCcceeCCCCCHHHH
Confidence 6669999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHhhCCCC
Q 027273 196 SVIESVFKLRE 206 (225)
Q Consensus 196 ~~Ie~~l~v~~ 206 (225)
++++++||++.
T Consensus 168 e~Lse~f~V~v 178 (222)
T COG1976 168 EELSELFGVPV 178 (222)
T ss_pred HHHHHHhCeeE
Confidence 99999999986
No 15
>PTZ00136 eukaryotic translation initiation factor 6-like protein; Provisional
Probab=99.97 E-value=3.1e-31 Score=235.04 Aligned_cols=127 Identities=17% Similarity=0.286 Sum_probs=124.1
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273 79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------ 138 (225)
Q Consensus 79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------ 138 (225)
++++.+|+|+++||+|||+||+.++++.+.+++.|+ +|+++++|+|++++|+++++|++|
T Consensus 8 ~gs~~IGVf~~~t~~y~lvp~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~ 87 (247)
T PTZ00136 8 ENSNDIGVFSKLTNSYCLVALGGSENFYSVFESELAPHIPVVHTTIGGTRVIGRLTVGNRKGLLVPSICTDQELQHLRNS 87 (247)
T ss_pred cCCCcEEEEEEEeCcEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCceeEEEEEeecCCeEEcCCcCCHHHHHHHHHh
Confidence 688999999999999999999999999999999999 999999999999999999998666
Q ss_pred ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273 139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 191 (225)
Q Consensus 139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT 191 (225)
|||||+++++..+.|+|+|+||+.++|| +|+++|||.+++||+|++|||+++
T Consensus 88 l~d~v~V~~l~~~~saiGn~i~~ND~~alV~p~l~~~~~e~I~d~L~VeVi~~tI-ag~~lVGs~~v~Nn~G~LVhP~~s 166 (247)
T PTZ00136 88 LPDSVKVQRVEERLSALGNCIACNDYVALIHPDLDRETEEIIQDVLGVEVFRTTI-AGNVLVGTYCVFTNQGGLVHPKTS 166 (247)
T ss_pred CcCCccEEEeCCccccceeEEEEcCCEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCCceEEEEEEEeCcEEEECCCCC
Confidence 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 027273 192 ATELSVIESVFKLRE 206 (225)
Q Consensus 192 ~~El~~Ie~~l~v~~ 206 (225)
.+|+++|+++||++.
T Consensus 167 ~ee~~~i~d~L~V~v 181 (247)
T PTZ00136 167 VQEMDELSSLLQVPL 181 (247)
T ss_pred HHHHHHHHHHhCCcE
Confidence 999999999999985
No 16
>KOG3185 consensus Translation initiation factor 6 (eIF-6) [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=3.2e-22 Score=172.10 Aligned_cols=127 Identities=17% Similarity=0.306 Sum_probs=124.1
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273 79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------ 138 (225)
Q Consensus 79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------ 138 (225)
++++.+|.|...++.||||.-.-++.+.+.++..|+ +|+++++|+|++++|+++++|.+|
T Consensus 8 ens~eiGvf~kLTNtYclva~ggS~nfys~~e~el~d~IPiV~tsI~g~riiGrl~~GNr~GLLvp~~tTDqElqHlRnS 87 (245)
T KOG3185|consen 8 ENSNEIGVFSKLTNTYCLVAIGGSENFYSAFEAELGDVIPIVHTSIGGTRIIGRLCVGNRHGLLVPHTTTDQELQHLRNS 87 (245)
T ss_pred cCCcceeeeeecccceEEEEecCchhHHHHHHHHhcCccceEEeeccceeeeehhhccCcCceecCCcCcHHHHHHHHhc
Confidence 788999999999999999999999999999999999 999999999999999999999777
Q ss_pred ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273 139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 191 (225)
Q Consensus 139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT 191 (225)
+||||++++|..+.|+|+|+|+|++.|+ ++.++|||++..+|+|++|||.|+
T Consensus 88 LPd~V~i~RveErlsALGNviaCNDyvAlvH~dldketEeii~dVL~VeVfRqti-a~n~LvGsyc~lsnqG~lVhp~Ts 166 (245)
T KOG3185|consen 88 LPDEVVIQRVEERLSALGNVIACNDYVALVHPDLDKETEEIIADVLKVEVFRQTI-AQNSLVGSYCALSNQGGLVHPRTS 166 (245)
T ss_pred CCcceeeehhhhHHhhhcCEEEecceeEEecCccchhHHHHHHHHhheeeeeecc-cCCceeeeeEEEcCCCceecCCCC
Confidence 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 027273 192 ATELSVIESVFKLRE 206 (225)
Q Consensus 192 ~~El~~Ie~~l~v~~ 206 (225)
-++.++++.+|.+|.
T Consensus 167 ~e~q~Els~LlqVpl 181 (245)
T KOG3185|consen 167 VEDQDELSSLLQVPL 181 (245)
T ss_pred HHHHHHHHHHhccce
Confidence 999999999999986
No 17
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=52.02 E-value=23 Score=32.26 Aligned_cols=160 Identities=20% Similarity=0.246 Sum_probs=106.8
Q ss_pred CeeEEEeeccceee-------------------------HHHHHHhhc-CCccEEEEEecCceEEeeeeeecCCeEEecC
Q 027273 1 MICMYKILLNEYCI-------------------------HSTFEAELA-DVIPVVKTSIGGNRIIGRLCVGNKNGLLLPH 54 (225)
Q Consensus 1 ~IGvy~~~t~~~~l-------------------------~~~i~~~L~-~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~ 54 (225)
+||.|..+.+.|+. ...++.... +.-|+|+-..+....|=.+.=---.++|+|.
T Consensus 18 qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~g~~~~Ikq~LD~GAqtlliPm 97 (255)
T COG3836 18 QIGLWLSLPDPYMAEILATAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPVGDPVMIKQLLDIGAQTLLIPM 97 (255)
T ss_pred eEEeeecCCcHHHHHHHHhcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCCCCHHHHHHHHccccceeeeec
Confidence 58888888888887 333333333 3367999999988888777777788999999
Q ss_pred CCCHHHHHHHHhhC---CCCee-EE---EeccCCCceeeEEE-eeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCce
Q 027273 55 TTTDQELQHLRNSL---PDQVV-VQ---RIEERLSALGNCIA-CNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNI 126 (225)
Q Consensus 55 ~~~d~El~~l~~~l---~~~v~-v~---~l~~~~~aiGn~i~-~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~ 126 (225)
.-+-++-+++-+.. |.|+. |. ---++.+.+..|.. +||+.|++-.--+++-.+.+.+.+.||=+-+ -
T Consensus 98 V~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDg-----v 172 (255)
T COG3836 98 VDTAEQARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDG-----V 172 (255)
T ss_pred cCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCe-----E
Confidence 99999988876654 44411 11 11244556666654 9999999998888988888888887763322 1
Q ss_pred eeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEee
Q 027273 127 LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTV 166 (225)
Q Consensus 127 lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTV 166 (225)
++|..=..-+.|.+-+|.-. |-.+.|+..+..-.-.|+.
T Consensus 173 FiGPaDLaas~G~~gn~~hp-eV~~aI~~~~~~i~aaGKa 211 (255)
T COG3836 173 FIGPADLAASLGHLGNPGHP-EVQAAIEHIIARIRAAGKA 211 (255)
T ss_pred EECHHHHHHHcCCCCCCCCH-HHHHHHHHHHHHHHhcCCc
Confidence 34444444577777777653 4446666655444344443
No 18
>PRK04323 hypothetical protein; Provisional
Probab=51.51 E-value=74 Score=24.73 Aligned_cols=67 Identities=15% Similarity=0.187 Sum_probs=46.7
Q ss_pred eeeEEEeeCcEEEEecCCChhHHHHHhhhh-CceEEEEeecCceeeeeEEEEcCCe-EEeCCCCCHHHHHHHh
Q 027273 84 LGNCIACNDHVALAHTDLDRETEEIIADVL-GVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELS 154 (225)
Q Consensus 84 iGn~i~~Nd~~alV~p~l~~~~~~~I~d~L-gVeV~~~tIag~~lVGs~~v~Nn~G-~LVhP~~s~eel~~l~ 154 (225)
.||++.+++=.|+++|+ |....+.+++.= .=.++..|-++ -.= ..+.++.| .+.||--++.=.+++.
T Consensus 10 fgn~V~~~rIIAIv~~~-Sap~Kr~~~~ak~~g~lidaT~Gr--ktr-svIItds~hV~LSai~~eTl~~R~~ 78 (91)
T PRK04323 10 FGNIVSANRIIAIVSPE-SAPIKRIIQEARERGMLIDATYGR--KTR-AVIITDSGHVILSAIQPETIAHRLS 78 (91)
T ss_pred CCcEEEcccEEEEECCC-cHHHHHHHHHHHHcCeEEeccCCC--cee-EEEEecCCeEEEeeCCHHHHHHHHh
Confidence 47999999999999999 677777776543 23466666532 122 34557777 8889888777666664
No 19
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=48.35 E-value=41 Score=31.92 Aligned_cols=85 Identities=14% Similarity=0.061 Sum_probs=53.6
Q ss_pred hHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCe-EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCc
Q 027273 104 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDW 182 (225)
Q Consensus 104 ~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~ 182 (225)
..++.+=+.+|++|....=++..+=-.....+..- .+++|.....-.+.+++-+|+|...... |
T Consensus 182 ~ei~~lL~~~Gi~v~~~~~~~~~~~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~----P----------- 246 (426)
T cd01972 182 DEFKRLLNELGLRVNAIIAGGCSVEELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQ----P----------- 246 (426)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCC----c-----------
Confidence 33444555689998754222222211112222222 4557777777788889888888654322 3
Q ss_pred eEEEcCCCCHHHHHHHHHhhCCCC
Q 027273 183 TAFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 183 G~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
.|.+.|..-++.|.+.||.+.
T Consensus 247 ---~G~~~T~~~l~~ia~~~g~~~ 267 (426)
T cd01972 247 ---YGIEATDKWLREIAKVLGMEA 267 (426)
T ss_pred ---cCHHHHHHHHHHHHHHhCCcH
Confidence 488899999999999999865
No 20
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=41.70 E-value=94 Score=29.64 Aligned_cols=50 Identities=12% Similarity=-0.013 Sum_probs=40.2
Q ss_pred EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273 139 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 139 ~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
.+++|.....-.+.+++-+|+|..... ..+|.+.|..-+..|.+.|+.+.
T Consensus 230 iv~~~~~~~~~a~~Le~~~giP~~~~~------------------~p~G~~~t~~~l~~l~~~~g~~~ 279 (435)
T cd01974 230 LALQEYATEKTAKFLEKKCKVPVETLN------------------MPIGVAATDEFLMALSELTGKPI 279 (435)
T ss_pred EEECccccHHHHHHHHHHhCCCeeecC------------------CCcChHHHHHHHHHHHHHhCCCC
Confidence 457888888888899998999955543 23588999999999999999864
No 21
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=38.99 E-value=2.7e+02 Score=24.40 Aligned_cols=110 Identities=13% Similarity=0.122 Sum_probs=66.0
Q ss_pred ecCCCCHHHHHHHHhhCCCC------eeEEEeccCCCc---eeeEEEeeCcEEEEecCCChh-HHHHHhhhhC---ceEE
Q 027273 52 LPHTTTDQELQHLRNSLPDQ------VVVQRIEERLSA---LGNCIACNDHVALAHTDLDRE-TEEIIADVLG---VEVF 118 (225)
Q Consensus 52 vp~~~~d~El~~l~~~l~~~------v~v~~l~~~~~a---iGn~i~~Nd~~alV~p~l~~~-~~~~I~d~Lg---VeV~ 118 (225)
+...++.+=++.|++.++.. +.+. ++..... =-.+....++.++++|..-++ ..+.+.+.|+ .+++
T Consensus 137 ~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~-~~~~~~~~HLD~~~~~l~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~iI 215 (281)
T PF02274_consen 137 VGSRTNEEGIEQLARALGEEEVVFEVVVVV-VPVDPGFLHLDTVFNPLDPDLVLVYPDAFDPEEEEELEQALKERGFEII 215 (281)
T ss_dssp ESSSS-HHHHHHHHHHHCCTTSESEEEEEE-EEECSSSSSGGGTEEEEETTEEEEECCHHCTHHHHHHHHHHSSSTCEEE
T ss_pred ecCCCCHHHHHHHHHHhcccccccccceee-ccCccCccccceEEEEcCCCEEEEeCcccchHHHHHHHHHhcccCcEEE
Confidence 56778888899999999877 2222 2221111 123444566777777776544 4777888877 6888
Q ss_pred EEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeee
Q 027273 119 RQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA 163 (225)
Q Consensus 119 ~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~ 163 (225)
..+-.....-|+-++.=+.|-++.+.......+.+++. |+++..
T Consensus 216 ~v~~~e~~~~~~N~l~l~~~~vi~~~~~~~~~~~L~~~-G~~v~~ 259 (281)
T PF02274_consen 216 EVPEEEQWNFACNVLSLGPGKVIAYASNPRTNEQLEKA-GIEVIE 259 (281)
T ss_dssp EESSCSCSGGGGS-EEECTTEEEEETTHHHHHHHHHHT-T-EEEE
T ss_pred EeccchhhhccCCEEEecCCEEEECCCCHHHHHHHHhc-CCeEEE
Confidence 88855544444333333566667777777777777764 655543
No 22
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=38.60 E-value=80 Score=29.92 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=48.8
Q ss_pred hHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCe---EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEc
Q 027273 104 ETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG---GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVN 180 (225)
Q Consensus 104 ~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G---~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaN 180 (225)
..++.+=+.+|+++.. .+-+.. +.-+... ..| ..++|... .-.+.+++-+|+|...... |
T Consensus 168 ~elk~lL~~~Gi~v~~-~lpd~~-~~e~~~~-~~~~~~~~~~~~~~-~~A~~Le~~~GiP~~~~~~----P--------- 230 (407)
T TIGR01279 168 DQLRLELKQLGIPVVG-FLPASH-FTELPVI-GPGTVVAPLQPYLS-DTATTLRRERGAKVLSAPF----P--------- 230 (407)
T ss_pred HHHHHHHHHcCCeEEE-EeCCCC-cchhhhc-CCCeEEEEechHHH-HHHHHHHHHhCCccccCCC----C---------
Confidence 3455566777888752 121211 1111100 011 35677666 4678888888888554332 3
Q ss_pred CceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273 181 DWTAFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 181 d~G~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
+|.+.|+.-++.|.+.||.+.
T Consensus 231 -----iGi~~T~~~l~~la~~~g~~~ 251 (407)
T TIGR01279 231 -----FGPDGTRRFLEAIAAEFGIEV 251 (407)
T ss_pred -----cCHHHHHHHHHHHHHHhCcCH
Confidence 478889999999999999863
No 23
>COG2052 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.86 E-value=33 Score=26.21 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=35.3
Q ss_pred eeeEEEeeCcEEEEecCCChhHHHHHhhhhCc-eEEEEeecCceeeeeEEEEcCCeEEeCC
Q 027273 84 LGNCIACNDHVALAHTDLDRETEEIIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHP 143 (225)
Q Consensus 84 iGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgV-eV~~~tIag~~lVGs~~v~Nn~G~LVhP 143 (225)
.||.+.+|--.|+|+|+- ....+.|.|.-+- ..+..|.+.- + -+..+..++-.+.|.
T Consensus 10 FGNivsanRviaIVsPES-aPiKRii~eArdr~~LIDATYGRr-T-Ravii~DS~hvILSA 67 (89)
T COG2052 10 FGNIVSANRVIAIVSPES-APIKRIIQEARDRGMLIDATYGRR-T-RAVIITDSDHVILSA 67 (89)
T ss_pred cccEeecceEEEEECCCc-ccHHHHHHHHHhcCcEEEcccCce-e-eEEEEecCCcEEEec
Confidence 589999999999999995 4466777776553 2444444332 1 233343444444443
No 24
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=35.85 E-value=58 Score=31.96 Aligned_cols=95 Identities=19% Similarity=0.174 Sum_probs=66.9
Q ss_pred hhHHHHHhhhhCceEEEE----eecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEE
Q 027273 103 RETEEIIADVLGVEVFRQ----TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLT 178 (225)
Q Consensus 103 ~~~~~~I~d~LgVeV~~~----tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~v 178 (225)
-...+.+-+-+|++|... ++...+-+| .|-.=|++||..+ +-...|++-+++|... .|+.
T Consensus 207 ~~~i~~lL~~lGI~v~~~lp~~~~~eL~~~~----~~~~~c~~~P~ls-~aa~~Le~~~gvp~~~------~P~P----- 270 (457)
T CHL00073 207 ASQLTLELKRQGIKVSGWLPSQRYTDLPSLG----EGVYVCGVNPFLS-RTATTLMRRRKCKLIG------APFP----- 270 (457)
T ss_pred HHHHHHHHHHcCCeEeEEeCCCCHHHHHhhC----cccEEEEcCcchH-HHHHHHHHHhCCceee------cCCc-----
Confidence 455666777788998632 233344444 3455699999999 7789999999998544 2442
Q ss_pred EcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhc
Q 027273 179 VNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 224 (225)
Q Consensus 179 aNd~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~ 224 (225)
+|.+-|+.-|+.|.++||++ +..+ ++.|..+.|.|
T Consensus 271 -------iGi~~Td~fLr~Ia~~~G~~---pe~l-~~Er~rl~dal 305 (457)
T CHL00073 271 -------IGPDGTRAWIEKICSVFGIE---PQGL-EEREEQIWESL 305 (457)
T ss_pred -------CcHHHHHHHHHHHHHHhCcC---HHHH-HHHHHHHHHHH
Confidence 79999999999999999974 3434 55555555543
No 25
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=35.34 E-value=54 Score=27.88 Aligned_cols=34 Identities=29% Similarity=0.390 Sum_probs=25.8
Q ss_pred eEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEe
Q 027273 86 NCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQT 121 (225)
Q Consensus 86 n~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~t 121 (225)
.+|+.|+.+.- ++.+.+..+.+++.||+||++..
T Consensus 80 v~IvSNsaGs~--~d~~~~~a~~~~~~lgIpvl~h~ 113 (168)
T PF09419_consen 80 VLIVSNSAGSS--DDPDGERAEALEKALGIPVLRHR 113 (168)
T ss_pred EEEEECCCCcc--cCccHHHHHHHHHhhCCcEEEeC
Confidence 56666665432 25678889999999999999876
No 26
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=33.16 E-value=70 Score=24.51 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=40.0
Q ss_pred EEeCCCCCHHHHHHHhhhc-------CceeeeEeeecCccceeeEEEEcCce--EEEcCCCCHHHHHHHHHhhCCCC
Q 027273 139 GLVHPHTSIEDLDELSTLL-------QVPLVAGTVNRGSEVIGAGLTVNDWT--AFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 139 ~LVhP~~s~eel~~l~d~L-------~V~v~~gTVN~G~~~VGsg~vaNd~G--~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
.+++|++++++++.+-+-+ |..+..-. +.|..-.-==+==+.+| ++++-+++++-+..+++.|++.+
T Consensus 12 ~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~-~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler~lri~e 87 (97)
T CHL00123 12 YLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQ-NRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEKALKLDE 87 (97)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-eecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHHHhCCCC
Confidence 6899999999988765433 22222222 12222211111113455 45667777899999999998866
No 27
>PLN02591 tryptophan synthase
Probab=32.52 E-value=1.8e+02 Score=26.12 Aligned_cols=112 Identities=21% Similarity=0.206 Sum_probs=64.9
Q ss_pred ecCCeEEecCCCCHHHHHHHHhhCC-CCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeec
Q 027273 45 GNKNGLLLPHTTTDQELQHLRNSLP-DQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIA 123 (225)
Q Consensus 45 gN~nGllvp~~~~d~El~~l~~~l~-~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIa 123 (225)
-.=+|+|+|..-. +|.+.+++.+. .++ +.+.+++|..+++-.+.|.+.=.==+
T Consensus 105 aGv~GviipDLP~-ee~~~~~~~~~~~gl-------------------~~I~lv~Ptt~~~ri~~ia~~~~gFI------ 158 (250)
T PLN02591 105 AGVHGLVVPDLPL-EETEALRAEAAKNGI-------------------ELVLLTTPTTPTERMKAIAEASEGFV------ 158 (250)
T ss_pred cCCCEEEeCCCCH-HHHHHHHHHHHHcCC-------------------eEEEEeCCCCCHHHHHHHHHhCCCcE------
Confidence 3458999999876 55555554421 122 34678999999888888877622112
Q ss_pred CceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCcc---ceeeEEEEcCceEEEcCC
Q 027273 124 GNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSE---VIGAGLTVNDWTAFCGSD 189 (225)
Q Consensus 124 g~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~---~VGsg~vaNd~G~lvg~~ 189 (225)
-+|++..+--.+..+ |.--++-++.+++..++|+..|. |.. -+....-..-.|++||+.
T Consensus 159 --Y~Vs~~GvTG~~~~~--~~~~~~~i~~vk~~~~~Pv~vGF---GI~~~e~v~~~~~~GADGvIVGSa 220 (250)
T PLN02591 159 --YLVSSTGVTGARASV--SGRVESLLQELKEVTDKPVAVGF---GISKPEHAKQIAGWGADGVIVGSA 220 (250)
T ss_pred --EEeeCCCCcCCCcCC--chhHHHHHHHHHhcCCCceEEeC---CCCCHHHHHHHHhcCCCEEEECHH
Confidence 233433332222222 34445668889998899987653 333 233322233578888864
No 28
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=27.94 E-value=2.1e+02 Score=27.09 Aligned_cols=50 Identities=12% Similarity=0.007 Sum_probs=40.6
Q ss_pred EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273 139 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 139 ~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
.+++|.....-.+.+++-+|+|...... ..|.+.|..-+..|.+.|+.+.
T Consensus 226 iv~~~~~~~~~a~~L~e~~GiP~~~~~~------------------p~G~~~t~~~l~~l~~~~g~~~ 275 (428)
T cd01965 226 IALGEYSGRKAAKALEEKFGVPYILFPT------------------PIGLKATDEFLRALSKLSGKPI 275 (428)
T ss_pred EEEChhhhHHHHHHHHHHHCCCeeecCC------------------CcChHHHHHHHHHHHHHHCCCC
Confidence 6778878888889999989998665432 3488899999999999999765
No 29
>TIGR03380 agmatine_aguA agmatine deiminase. Members of this family are agmatine deiminase (3.5.3.12), as characterized in Pseudomonas aeruginosa and plants. Related deiminases include the peptidyl-arginine deiminase (3.5.3.15) as found in Porphyromonas gingivalis.
Probab=27.66 E-value=2.7e+02 Score=26.37 Aligned_cols=60 Identities=23% Similarity=0.418 Sum_probs=41.0
Q ss_pred ecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCe-------EEe----CCCCCHHHHH-HHhhhcCce
Q 027273 98 HTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRG-------GLV----HPHTSIEDLD-ELSTLLQVP 160 (225)
Q Consensus 98 ~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------~LV----hP~~s~eel~-~l~d~L~V~ 160 (225)
+.+.+...-+.|.+.+|++.++.. ..+=|=....|-+| ||+ +|..|++|++ +|++.||+.
T Consensus 122 ~~~~D~~v~~~ia~~~g~~~~~~~---lvlEGG~ie~dG~GtlltTe~clln~nRNP~ls~~eIe~~Lk~~LGv~ 193 (357)
T TIGR03380 122 PWDKDDLVARKVCELEGIDRYRAD---FVLEGGSIHVDGEGTLLTTEECLLSEGRNPHLTKEQIEEKLKDYLGVE 193 (357)
T ss_pred CcchHHHHHHHHHHHcCCCccccC---eEEeCCcEEECCCeeEEEEhhhhcCCCCCCCCCHHHHHHHHHHHHCCC
Confidence 456677888999999999988853 22223333335455 554 5678888875 568889988
No 30
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=25.69 E-value=1.3e+02 Score=22.80 Aligned_cols=52 Identities=12% Similarity=0.156 Sum_probs=37.1
Q ss_pred EEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHH-HhhhcCceeee-Eeeec
Q 027273 95 ALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDE-LSTLLQVPLVA-GTVNR 168 (225)
Q Consensus 95 alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~-l~d~L~V~v~~-gTVN~ 168 (225)
.|.+|-+++++...+++. |-.-..|+|+++..|++. ++.+|+|+|.. -|+|.
T Consensus 4 iI~~PviTEK~~~~~e~~----------------------n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~ 57 (84)
T PRK14548 4 IIKYPLVTEKAMNLIEKE----------------------NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLIT 57 (84)
T ss_pred chhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEc
Confidence 356677777776655432 566789999999999875 57789999755 44433
No 31
>PF02274 Amidinotransf: Amidinotransferase; InterPro: IPR003198 This family contains glycine and inosamine amidinotransferases, enzymes which are involved in creatine and streptomycin biosynthesis respectively. This family also includes arginine deiminases, which catalyse the reversible reaction: arginine + H2O = citrulline + NH3 The Streptococcus anti-tumour glycoprotein is also found in this family [].; GO: 0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines, 0005737 cytoplasm; PDB: 2CI7_A 2CI1_A 2CI4_A 2CI3_A 2CI5_A 2C6Z_A 2CI6_A 3I4A_B 3I2E_B 2JAI_A ....
Probab=23.59 E-value=4.2e+02 Score=23.17 Aligned_cols=142 Identities=18% Similarity=0.130 Sum_probs=79.2
Q ss_pred HHHHHhhcCC-ccEEEEEec------CceEEeeeeeecCCeEEecCCCCH---HHHHHHHhhCCC----CeeEEEe----
Q 027273 16 STFEAELADV-IPVVKTSIG------GNRIIGRLCVGNKNGLLLPHTTTD---QELQHLRNSLPD----QVVVQRI---- 77 (225)
Q Consensus 16 ~~i~~~L~~~-v~vv~t~I~------gs~lvG~l~~gN~nGllvp~~~~d---~El~~l~~~l~~----~v~v~~l---- 77 (225)
+.+.+.|..+ ++|+...-. ++-+.-=..+--.+|+++.++..+ .|....+..+.. .-.+..+
T Consensus 35 ~~l~~~L~~~Gv~V~~~~~~~~~~~p~~vF~rD~~~~~~~~~ii~~m~~~~R~~E~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (281)
T PF02274_consen 35 DALVEALRSNGVEVIELPPLLEEPLPDMVFTRDPGVVIGGGVIIGRMRAPSRRGEEDVYKEIFEKHPFNIPRVLDIEEEN 114 (281)
T ss_dssp HHHHHHHHTTT-EEEEEHHHHHTT-TTTT-TTCCEEEECTEEEE-B-SSGGGHGHHHHHHHHHHHSCCCTCCEEEEEEC-
T ss_pred HHHHHHHHhCCcEEEEeCCccCCCCCCeEEcCCcEEEEcCCEEEeCCChHHhcCcchHHHHHHHhhccccceeeCCcccc
Confidence 3444444433 666665433 233332222335689999988653 455544443211 1122222
Q ss_pred --ccCCCceeeEEEeeCcEEE--EecCCChhHHHHHhhhhCce-----E-EEEee---cCceeeeeEEEEcCCeEEeCCC
Q 027273 78 --EERLSALGNCIACNDHVAL--AHTDLDRETEEIIADVLGVE-----V-FRQTI---AGNILVGSYCSFSNRGGLVHPH 144 (225)
Q Consensus 78 --~~~~~aiGn~i~~Nd~~al--V~p~l~~~~~~~I~d~LgVe-----V-~~~tI---ag~~lVGs~~v~Nn~G~LVhP~ 144 (225)
+.-..- |.++..++...+ ++.-.+++.++.+++.|+-. + ....- .-..+=-.++.+..+-++++|.
T Consensus 115 ~~~~~lEG-GDv~~~~~~~~v~G~g~RTn~~g~~~l~~~l~~~~~~~~v~~~~~~~~~~~~HLD~~~~~l~~~~~l~~~~ 193 (281)
T PF02274_consen 115 GDPGYLEG-GDVLVLGDNVLVIGVGSRTNEEGIEQLARALGEEEVVFEVVVVVVPVDPGFLHLDTVFNPLDPDLVLVYPD 193 (281)
T ss_dssp -TTS-B-G-GGEEEESTEEEEEEESSSS-HHHHHHHHHHHCCTTSESEEEEEEEEECSSSSSGGGTEEEEETTEEEEECC
T ss_pred ccCceecC-cEEEEECCEEEEEeecCCCCHHHHHHHHHHhcccccccccceeeccCccCccccceEEEEcCCCEEEEeCc
Confidence 334445 999988887777 67778889999999999977 1 11111 2233334577777888999998
Q ss_pred CCHHH-HHHHhhhcC
Q 027273 145 TSIED-LDELSTLLQ 158 (225)
Q Consensus 145 ~s~ee-l~~l~d~L~ 158 (225)
+-+++ .+.+.+.|+
T Consensus 194 ~~~~~~~~~l~~~l~ 208 (281)
T PF02274_consen 194 AFDPEEEEELEQALK 208 (281)
T ss_dssp HHCTHHHHHHHHHHS
T ss_pred ccchHHHHHHHHHhc
Confidence 76554 666777665
No 32
>COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]
Probab=22.97 E-value=1.3e+02 Score=24.11 Aligned_cols=58 Identities=21% Similarity=0.402 Sum_probs=38.2
Q ss_pred EEeCCCCCHHHHHHHhhhcCceee--eEeeecCccceeeEEEEcCce----------------EEEcCCCCHHHHHHHHH
Q 027273 139 GLVHPHTSIEDLDELSTLLQVPLV--AGTVNRGSEVIGAGLTVNDWT----------------AFCGSDTTATELSVIES 200 (225)
Q Consensus 139 ~LVhP~~s~eel~~l~d~L~V~v~--~gTVN~G~~~VGsg~vaNd~G----------------~lvg~~TT~~El~~Ie~ 200 (225)
++++|+.|+|+.+.+-+-++=-+. .|+| .-..+|| .++.-++++.-+..+++
T Consensus 7 ~iv~p~~see~~~~~ve~~~~~l~~~gg~i----------~~~e~wG~R~LAY~IkK~~~g~Y~l~~f~~~~~~i~Eler 76 (112)
T COG0360 7 FIVRPDLSEEQVAALVEKYKGVLTNNGGEI----------HKVEDWGKRRLAYPIKKLREGHYVLMNFEAEPAAIAELER 76 (112)
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCCEE----------EEehhhhhhhhcceecccceEEEEEEEEEcCHHHHHHHHH
Confidence 689999998776665432221111 1222 3444554 46777888999999999
Q ss_pred hhCCCC
Q 027273 201 VFKLRE 206 (225)
Q Consensus 201 ~l~v~~ 206 (225)
.|.+.+
T Consensus 77 ~~rin~ 82 (112)
T COG0360 77 LLRINE 82 (112)
T ss_pred Hhccch
Confidence 999876
No 33
>COG0309 HypE Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=1.6e+02 Score=28.03 Aligned_cols=72 Identities=17% Similarity=0.181 Sum_probs=53.4
Q ss_pred eEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHH-------hhhcC
Q 027273 86 NCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDEL-------STLLQ 158 (225)
Q Consensus 86 n~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l-------~d~L~ 158 (225)
.+++++|.+.+.|+-++... -|-=.+..+.++..+-|.--..=+-+.+++|.++.|+++++ .+-+|
T Consensus 50 ~la~tTD~~~i~P~ff~~~d-------iG~lAV~gt~NDlav~GA~P~~l~~~lil~eg~~~e~l~~i~~si~e~a~~~G 122 (339)
T COG0309 50 VLAFTTDPFVIDPLFFPGGD-------IGKLAVHGTANDVAVSGAKPRYLSVGLILPEGLPIEDLERILKSIDEEAEEAG 122 (339)
T ss_pred eEEEEeCCeEecccccCCCc-------eEEEEEEEehhhhhhcCCCceeeeEeEecCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 58899999999998886652 12234556666666666665556778999999999999988 34588
Q ss_pred ceeeeE
Q 027273 159 VPLVAG 164 (225)
Q Consensus 159 V~v~~g 164 (225)
|++..|
T Consensus 123 v~IvtG 128 (339)
T COG0309 123 VSIVTG 128 (339)
T ss_pred CeEEcc
Confidence 887654
No 34
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=21.27 E-value=57 Score=29.24 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=70.2
Q ss_pred ccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhC---CCCee-EEEeccCCCceee---E-EEeeCcEEEE
Q 027273 26 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL---PDQVV-VQRIEERLSALGN---C-IACNDHVALA 97 (225)
Q Consensus 26 v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l---~~~v~-v~~l~~~~~aiGn---~-i~~Nd~~alV 97 (225)
.++|+..-..-..+....=.--.|+++|..-|-+|.+.+-+.. |.|.. +. -..+.+..|. | -.+|++..++
T Consensus 71 ~~lVRvp~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a~kypP~G~Rg~~-~~~~~~~y~~~~~y~~~an~~~~vi 149 (256)
T PRK10558 71 APVVRVPTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVASTRYPPEGIRGVS-VSHRANMFGTVPDYFAQSNKNITVL 149 (256)
T ss_pred CcEEECCCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHHcCCCCCCcCCCC-ccccccccCChHHHHHHhccccEEE
Confidence 5688887777778888777788999999999999999987663 33311 00 0001122221 1 2368888888
Q ss_pred ecCCChhHHHHHhhhhCce-EEEEeecCceeeeeE
Q 027273 98 HTDLDRETEEIIADVLGVE-VFRQTIAGNILVGSY 131 (225)
Q Consensus 98 ~p~l~~~~~~~I~d~LgVe-V~~~tIag~~lVGs~ 131 (225)
+.-=+.+.++.+++.+.+| |--..++-.-+-.++
T Consensus 150 ~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~sl 184 (256)
T PRK10558 150 VQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 184 (256)
T ss_pred EEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHc
Confidence 8888888999999999876 444445555444443
No 35
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=20.89 E-value=1.1e+02 Score=27.32 Aligned_cols=102 Identities=18% Similarity=0.225 Sum_probs=67.4
Q ss_pred ccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhC---CCCeeEEEeccCCCceee---E-EEeeCcEEEEe
Q 027273 26 IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL---PDQVVVQRIEERLSALGN---C-IACNDHVALAH 98 (225)
Q Consensus 26 v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l---~~~v~v~~l~~~~~aiGn---~-i~~Nd~~alV~ 98 (225)
.++|+..-..-..+.+..=.--.|+++|..-|-+|.+.+.+.. |.|..=.--..+.+..|. | -.+|++..+++
T Consensus 64 ~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~ 143 (249)
T TIGR03239 64 APVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLV 143 (249)
T ss_pred CcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEE
Confidence 4677877777777777777788999999999999999998763 333110000001111221 2 23678888888
Q ss_pred cCCChhHHHHHhhhhCce-EEEEeecCcee
Q 027273 99 TDLDRETEEIIADVLGVE-VFRQTIAGNIL 127 (225)
Q Consensus 99 p~l~~~~~~~I~d~LgVe-V~~~tIag~~l 127 (225)
.-=+.+.++.+++.+.+| |--..++-.-+
T Consensus 144 ~IEt~~av~n~~eI~av~gvd~l~iG~~DL 173 (249)
T TIGR03239 144 QIESQKGVDNVDEIAAVDGVDGIFVGPSDL 173 (249)
T ss_pred EECCHHHHHhHHHHhCCCCCCEEEEChHHH
Confidence 888889999999999876 33344444444
No 36
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=20.31 E-value=3.9e+02 Score=24.02 Aligned_cols=111 Identities=22% Similarity=0.249 Sum_probs=62.2
Q ss_pred CCeEEecCCCCHHHHHHHHhhCCC-CeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCc
Q 027273 47 KNGLLLPHTTTDQELQHLRNSLPD-QVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGN 125 (225)
Q Consensus 47 ~nGllvp~~~~d~El~~l~~~l~~-~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~ 125 (225)
-+|+|+|..-. +|.+.+.+.+.. ++ +.+.+++|..+++..+.|.+.=.-=++-.+..|.
T Consensus 118 vdGviipDLp~-ee~~~~~~~~~~~gl-------------------~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~Gv 177 (258)
T PRK13111 118 VDGLIIPDLPP-EEAEELRAAAKKHGL-------------------DLIFLVAPTTTDERLKKIASHASGFVYYVSRAGV 177 (258)
T ss_pred CcEEEECCCCH-HHHHHHHHHHHHcCC-------------------cEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCC
Confidence 48999999876 466666544211 11 2356789999988888877762211322222221
Q ss_pred eeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCcc---ceeeEEEEcCceEEEcCCCC
Q 027273 126 ILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSE---VIGAGLTVNDWTAFCGSDTT 191 (225)
Q Consensus 126 ~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~---~VGsg~vaNd~G~lvg~~TT 191 (225)
.|+ ..+ .|.--++.++.+++..++|+..|- |.. -+....-. -.|++||+...
T Consensus 178 --TG~-----~~~---~~~~~~~~i~~vk~~~~~pv~vGf---GI~~~e~v~~~~~~-ADGviVGSaiv 232 (258)
T PRK13111 178 --TGA-----RSA---DAADLAELVARLKAHTDLPVAVGF---GISTPEQAAAIAAV-ADGVIVGSALV 232 (258)
T ss_pred --CCc-----ccC---CCccHHHHHHHHHhcCCCcEEEEc---ccCCHHHHHHHHHh-CCEEEEcHHHH
Confidence 121 111 144556788999998888876542 221 11111111 47888887554
Done!