Query 027273
Match_columns 225
No_of_seqs 169 out of 456
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 12:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a18_J EIF6, translation initi 100.0 2E-78 6.8E-83 534.6 15.0 224 1-224 15-247 (248)
2 1g62_A Ribosome anti-associati 100.0 2.1E-75 7.2E-80 509.2 15.4 204 1-204 12-224 (224)
3 4adx_I AIF6; ribosome, protein 100.0 2E-65 6.8E-70 446.2 26.5 201 1-206 12-221 (222)
4 1g61_A EIF-6, translation init 100.0 9.3E-65 3.2E-69 443.5 13.0 201 1-204 14-227 (228)
5 4adx_I AIF6; ribosome, protein 100.0 1.8E-33 6.1E-38 245.0 22.5 174 28-206 2-176 (222)
6 1g62_A Ribosome anti-associati 100.0 1.1E-31 3.7E-36 233.9 10.4 127 79-206 8-181 (224)
7 1g61_A EIF-6, translation init 100.0 4.7E-32 1.6E-36 236.9 6.4 154 1-159 58-227 (228)
8 4a18_J EIF6, translation initi 100.0 2.1E-31 7.2E-36 235.0 10.4 127 79-206 11-184 (248)
9 1jdw_A L-arginine\:glycine ami 62.4 28 0.00096 32.1 8.5 106 54-162 271-391 (423)
10 3i4a_A N(G),N(G)-dimethylargin 54.9 55 0.0019 28.7 8.7 105 15-123 174-286 (308)
11 3i4a_A N(G),N(G)-dimethylargin 35.1 2.2E+02 0.0077 24.7 13.7 148 48-200 109-274 (308)
12 2jer_A Agmatine deiminase; hyd 33.7 64 0.0022 29.6 5.8 104 59-162 69-203 (389)
13 3h7c_X Agmatine deiminase; str 32.8 1E+02 0.0034 28.3 7.0 100 58-160 66-206 (383)
14 1wex_A Hypothetical protein (r 31.3 1.4E+02 0.0049 21.4 6.4 54 41-111 17-70 (104)
15 3j21_T 50S ribosomal protein L 30.4 99 0.0034 22.5 5.3 51 96-168 7-59 (86)
16 3r8s_T 50S ribosomal protein L 29.6 81 0.0028 23.2 4.8 51 96-168 11-63 (93)
17 1qgu_B Protein (nitrogenase mo 29.1 50 0.0017 31.0 4.4 64 139-223 287-350 (519)
18 1bwd_A ADT, protein (inosamine 26.0 1.6E+02 0.0053 26.0 6.8 107 53-163 195-317 (348)
19 4f25_A Polyadenylate-binding p 24.5 1.7E+02 0.0056 20.9 5.7 61 42-115 8-68 (115)
20 3zzp_A TS9, ribosomal protein 24.5 1.8E+02 0.0063 20.4 5.7 59 93-155 6-66 (77)
21 1vq8_S 50S ribosomal protein L 23.0 1.4E+02 0.0049 21.6 5.0 51 96-168 6-58 (85)
22 2zjr_Q 50S ribosomal protein L 22.2 69 0.0023 23.7 3.2 34 135-168 23-58 (95)
23 1jdw_A L-arginine\:glycine ami 21.6 3.2E+02 0.011 24.9 8.3 103 15-122 278-395 (423)
24 2ad9_A Polypyrimidine tract-bi 20.1 2.2E+02 0.0075 21.3 5.8 48 52-111 39-86 (119)
No 1
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=100.00 E-value=2e-78 Score=534.62 Aligned_cols=224 Identities=63% Similarity=1.041 Sum_probs=203.7
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
.||||+++||+||| ++.|+++|++|+|+|+|+|+||++||+|++||+||||||++++|+|+++||++||++
T Consensus 15 ~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~l~~~ 94 (248)
T 4a18_J 15 DIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNSLPDN 94 (248)
T ss_dssp CGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHHSCTT
T ss_pred cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhhCCCC
Confidence 48999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|+|+++|+||+|||++|||++|||||++++++.+.|+|+|||||++++|||+++|||++++||+|+||||.++++|++
T Consensus 95 v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tIags~lVGs~~v~Nn~G~LVhp~~s~eEl~ 174 (248)
T 4a18_J 95 VRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTIANNVLVGTYCVINNRGGLVHPLASVEELD 174 (248)
T ss_dssp SEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCBTTBSCHHHHEEECSSCEEECTTCCHHHHH
T ss_pred ceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEcCCcceeEEEEEEeCCeEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHHHhhhhc
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRKSLIDSY 224 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~ 224 (225)
+|+++|+||+..||+|+|+++||||++|||||++|||+||++|+++||++||+++.+++++..+||++|||+|
T Consensus 175 ~L~~~l~V~v~~gTvN~G~~~VGsgivaNd~GalVg~~tT~~El~~Ie~~l~v~~~~~~~~~~~~~~~~~~~~ 247 (248)
T 4a18_J 175 ELANLLQIPLCAGTINRGSDVIGAGLVVNDWAAFCGLDTTSTEISVVENIFKLNEMKDENMDNEMRKDFVMNL 247 (248)
T ss_dssp HHHHHHTSCEEECCBTTTBSCHHHHEEEETTEEEEETTCCHHHHHHHHHHTTCC-------------------
T ss_pred HHHHHhCCceEEEeecCCCccceEEEEEeCCeEEECCCCCHHHHHHHHHHhCCCCCCchHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999999778889999999999987
No 2
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=100.00 E-value=2.1e-75 Score=509.22 Aligned_cols=204 Identities=71% Similarity=1.107 Sum_probs=202.2
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
.||||+++||+||| ++.|+++|++|+|+++|+|+||++||+|++||+||||||++++|+|+++||++||++
T Consensus 12 ~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 91 (224)
T 1g62_A 12 EIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNSLPDS 91 (224)
T ss_dssp CHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHSCTT
T ss_pred cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhhCCCC
Confidence 48999999999999 899999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|+|+++|++|+|||++|||++|||||++++++++.|+|+|||||++++|||+++|||++++||+|+||||+++++|++
T Consensus 92 v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tIag~~lVGs~~v~nn~G~LVhP~~s~ee~~ 171 (224)
T 1g62_A 92 VKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTISGNILVGSYCSLSNQGGLVHPQTSVQDQE 171 (224)
T ss_dssp SEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCBTTBSCGGGSEEECSSCEEECTTCCHHHHH
T ss_pred ceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEecCcceEEEEEEEeCcEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v 204 (225)
+|+|+||||+.+||+|+|.++||||++|||||++|||+||++|+++||++|++
T Consensus 172 ~i~d~L~V~v~~gTvN~G~~~VGs~~vann~G~lvg~~TT~~El~~Ie~~f~v 224 (224)
T 1g62_A 172 ELSSLLQVPLVAGTVNRGSSVVGAGMVVNDYLAVTGLDTTAPELSVIESIFRL 224 (224)
T ss_dssp HHHHHHTSCEEECCBTTTBSCHHHHEEECSSCEEEETTCCHHHHHHHHHHTTC
T ss_pred HHHHHhCCcEEEEEEcCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999986
No 3
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=2e-65 Score=446.23 Aligned_cols=201 Identities=34% Similarity=0.509 Sum_probs=197.5
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCC
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQ 71 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~ 71 (225)
.||||+++||+||| ++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|+++||+. +
T Consensus 12 ~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~~~l~~~---~ 86 (222)
T 4adx_I 12 NLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREIDALAAA---G 86 (222)
T ss_pred cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHHHHHHhc---C
Confidence 58999999999999 999999999 999999999999999999999999999999999999999983 7
Q ss_pred eeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH
Q 027273 72 VVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD 151 (225)
Q Consensus 72 v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~ 151 (225)
++|.++++|++++||+++|||++|||||++++++++.|+|+|||||++.+|++.+++|+++++||+|+||||+++++|++
T Consensus 87 v~V~~~~~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i~~~~avGn~~v~nn~G~lVhP~~s~ee~~ 166 (222)
T 4adx_I 87 VEAVRIPERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTLAGLNIVGSMGAATNRGALLNPQASSEEIG 166 (222)
T ss_pred CeEEEECCCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEecCCccceEEEEEEeCceEEECCCCCHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCC
Q 027273 152 ELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 152 ~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~ 206 (225)
+|+++|+||+.+||+|+|+++||||++|||||++|||+||++||++||++||+.+
T Consensus 167 ~i~~~L~V~v~~GTvn~G~~~VGsg~VaN~~G~lvg~~TT~~El~~ie~~f~~~~ 221 (222)
T 4adx_I 167 IIEDTLGVEADVGTVNHGVTLIGACSVANSNGVLVGEETTGPELARIEEALGFLE 221 (222)
T ss_pred HHHHHhCCCEEEeeecCCCCceeEEEEEeCCEEEECCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999999999999865
No 4
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=100.00 E-value=9.3e-65 Score=443.50 Aligned_cols=201 Identities=36% Similarity=0.507 Sum_probs=198.4
Q ss_pred CeeEEEeeccceee---------HHHHHHhhcCCccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhC---
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELADVIPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSL--- 68 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~~~v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l--- 68 (225)
.||||+++||+||| ++.|+++|+ +|+++|+|+||++||+|++||+||+|||+.++|+|+++||++|
T Consensus 14 ~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~vv~~si~gs~~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~ 91 (228)
T 1g61_A 14 TIGVLALTTEEITLLPIFLDKDDVNEVSEVLE--TKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKEN 91 (228)
T ss_dssp CHHHHCEECSSEEEECTTCCHHHHHHHHHHHT--CEEEECCBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHT
T ss_pred cEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCccEEEEEEecCCEEEECCCCCHHHHHHHHHHhhcc
Confidence 48999999999999 899999999 9999999999999999999999999999999999999999998
Q ss_pred CCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHH
Q 027273 69 PDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIE 148 (225)
Q Consensus 69 ~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~e 148 (225)
|++++|+++++|++++||+++|||++|||||++ ++..+.|+|+|+|+|++.+|++..++|++++++|+|+||||+++++
T Consensus 92 ~~~v~V~~v~~~~~alGnli~~Nd~galV~~el-~~~~~~i~d~L~veV~~~~i~~~~tvg~n~v~tN~G~LVhP~~s~e 170 (228)
T 1g61_A 92 NLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDD 170 (228)
T ss_dssp TCCCEEEEECCSSCCHHHHEEECSSEEEECGGG-GGGHHHHHHHHCSEEEECCBTTBSCTTTSEEECSSEEEECTTCCHH
T ss_pred CCCceEEEEcCCCcceEEEEEecCccEEeCHHH-HHHHHHHHHhcCCceEEEEeCCccceeeEEEEecceEEECCCCCHH
Confidence 889999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCce-eeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCC
Q 027273 149 DLDELSTLLQVP-LVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKL 204 (225)
Q Consensus 149 el~~l~d~L~V~-v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v 204 (225)
|+++|+|+|||| +.+||+|+|+++||||++|||||++|||+||++|+++||++|++
T Consensus 171 e~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 171 ELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227 (228)
T ss_dssp HHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETTCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCCCCHHHHHHHHHHhcc
Confidence 999999999999 99999999999999999999999999999999999999999997
No 5
>4adx_I AIF6; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.8e-33 Score=245.03 Aligned_cols=174 Identities=20% Similarity=0.280 Sum_probs=166.0
Q ss_pred EEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEec-cCCCceeeEEEeeCcEEEEecCCChhHH
Q 027273 28 VVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIE-ERLSALGNCIACNDHVALAHTDLDRETE 106 (225)
Q Consensus 28 vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~-~~~~aiGn~i~~Nd~~alV~p~l~~~~~ 106 (225)
+.++.+.||+-||.|+.-++.=.|+|....++-.+.+++.|. +++.+.. .+++.+|.|+++||+++|+||..+++..
T Consensus 2 ~~r~~~~gs~~iGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~--v~ii~~si~Gs~~IG~~~~~N~~gllvp~~~~d~e~ 79 (222)
T 4adx_I 2 IRRINLSGNPNLGVYISVTDSVALIPQNTPEKFEGVLREALE--VEVLKVSISGSSLNGALAVGNSNGFVVSNQAMDREI 79 (222)
T ss_pred cEEEEecCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhC--CcEEEEEecCCcceeEEEEecCCEEEECCCCCHHHH
Confidence 468999999999999999999999999999999999999975 6665554 6999999999999999999999999999
Q ss_pred HHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEE
Q 027273 107 EIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFC 186 (225)
Q Consensus 107 ~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lv 186 (225)
+.|++ ++|+|.+++ ++++.+|.++++||+|+||||+++++|++.|+|+|+|++.++|+ ++.+.||+.++|||+|++|
T Consensus 80 ~~l~~-~~v~V~~~~-~~~~alGnli~~Nd~galV~~~~~~ee~e~I~d~L~VeV~~~~i-~~~~avGn~~v~nn~G~lV 156 (222)
T 4adx_I 80 DALAA-AGVEAVRIP-ERFTAVGNLVLANDNGAVASPLLSDDALQVIGDVLEVDVKVSTL-AGLNIVGSMGAATNRGALL 156 (222)
T ss_pred HHHHh-cCCeEEEEC-CCcceeEEEEEEcCceEEECCcCCHHHHHHHHHhhCccEEEEec-CCccceEEEEEEeCceEEE
Confidence 99999 599999999 99999999999999999999999999999999999999999998 8899999999999999999
Q ss_pred cCCCCHHHHHHHHHhhCCCC
Q 027273 187 GSDTTATELSVIESVFKLRE 206 (225)
Q Consensus 187 g~~TT~~El~~Ie~~l~v~~ 206 (225)
||++|++|+++|+++|+++.
T Consensus 157 hP~~s~ee~~~i~~~L~V~v 176 (222)
T 4adx_I 157 NPQASSEEIGIIEDTLGVEA 176 (222)
T ss_pred CCCCCHHHHHHHHHHhCCCE
Confidence 99999999999999999986
No 6
>1g62_A Ribosome anti-association factor EIF6; alpha-beta barrel, velcro closure, subdomain, structural genomics, PSI; 2.50A {Saccharomyces cerevisiae} SCOP: d.126.1.1 PDB: 2x7n_B
Probab=99.97 E-value=1.1e-31 Score=233.94 Aligned_cols=127 Identities=20% Similarity=0.315 Sum_probs=124.2
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273 79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------ 138 (225)
Q Consensus 79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------ 138 (225)
++++.+|+|+.+||+|||+||+.++++.+.+++.|+ +|+++++|+|++++|+++++|++|
T Consensus 8 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~~ 87 (224)
T 1g62_A 8 ENSNEIGVFSKLTNTYCLVAVGGSENFYSAFEAELGDAIPIVHTTIAGTRIIGRMTAGNRRGLLVPTQTTDQELQHLRNS 87 (224)
T ss_dssp TTBCCHHHHEEECSSCEEEETTCCHHHHHHHHHHHTTTSCEEEECBTTBSCHHHHCEECSSEEEEETTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhccCccEEEEEecCcceEEEEEEecCceEEcCCcCCHHHHHHHHhh
Confidence 789999999999999999999999999999999999 999999999999999999998666
Q ss_pred ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273 139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 191 (225)
Q Consensus 139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT 191 (225)
|||||+++++..+.|+|+|+||+.++|+ +|+++|||.+++||+|++|||+++
T Consensus 88 l~~~v~V~~~~~~~~aiGn~i~~ND~~alV~p~l~~e~~~~i~d~L~VeV~~~tI-ag~~lVGs~~v~nn~G~LVhP~~s 166 (224)
T 1g62_A 88 LPDSVKIQRVEERLSALGNVICCNDYVALVHPDIDRETEELISDVLGVEVFRQTI-SGNILVGSYCSLSNQGGLVHPQTS 166 (224)
T ss_dssp SCTTSEEEEECCCSSCHHHHEEECSSEEEECTTCCHHHHHHHHHHHTSEEEECCB-TTBSCGGGSEEECSSCEEECTTCC
T ss_pred CCCCceEEEECCcCcceeEEEEEcCcEEEECCCCCHHHHHHHHHhhCCcEEEEEe-cCcceEEEEEEEeCcEEEECCCCC
Confidence 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 027273 192 ATELSVIESVFKLRE 206 (225)
Q Consensus 192 ~~El~~Ie~~l~v~~ 206 (225)
.+|++.|+++|+++.
T Consensus 167 ~ee~~~i~d~L~V~v 181 (224)
T 1g62_A 167 VQDQEELSSLLQVPL 181 (224)
T ss_dssp HHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHhCCcE
Confidence 999999999999986
No 7
>1g61_A EIF-6, translation initiation factor 6; alpha-beta-barrel velcro closure subdomain, structural genomics, PSI; 1.30A {Methanocaldococcus jannaschii} SCOP: d.126.1.1
Probab=99.97 E-value=4.7e-32 Score=236.91 Aligned_cols=154 Identities=19% Similarity=0.244 Sum_probs=140.7
Q ss_pred CeeEEEeeccceee---------HHHHHHhhc---CC--ccEEEEEecCceEEeeeeeecCCeEEecCCCCHHHHHHHHh
Q 027273 1 MICMYKILLNEYCI---------HSTFEAELA---DV--IPVVKTSIGGNRIIGRLCVGNKNGLLLPHTTTDQELQHLRN 66 (225)
Q Consensus 1 ~IGvy~~~t~~~~l---------~~~i~~~L~---~~--v~vv~t~I~gs~lvG~l~~gN~nGllvp~~~~d~El~~l~~ 66 (225)
+||+|++.|++++| ++.|++.|+ +. |+++++ +++.+|.++++|+||+|||+-. ++..+.|++
T Consensus 58 ~IGv~~~gN~~gllvp~~~~d~e~~~i~~~L~~~~~~v~V~~v~~---~~~alGnli~~Nd~galV~~el-~~~~~~i~d 133 (228)
T 1g61_A 58 LVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKS---KNTALGNLILTNDKGALISPEL-KDFKKDIED 133 (228)
T ss_dssp CHHHHCEECSSEEEEETTCCHHHHHHHHHHHHHTTCCCEEEEECC---SSCCHHHHEEECSSEEEECGGG-GGGHHHHHH
T ss_pred cEEEEEEecCCEEEECCCCCHHHHHHHHHHhhccCCCceEEEEcC---CCcceEEEEEecCccEEeCHHH-HHHHHHHHH
Confidence 58999999999999 889999884 22 566775 9999999999999999999966 555567777
Q ss_pred hCCCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCce-EEEEeec-CceeeeeEEEEcCCeEEeCCC
Q 027273 67 SLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGVE-VFRQTIA-GNILVGSYCSFSNRGGLVHPH 144 (225)
Q Consensus 67 ~l~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVe-V~~~tIa-g~~lVGs~~v~Nn~G~LVhP~ 144 (225)
.|+.++.++++.++.++.||.+++| ++|||||+++++..+.|+|.|+|| +.++|++ |+++|||.+++||+|+++||+
T Consensus 134 ~L~veV~~~~i~~~~tvg~n~v~tN-~G~LVhP~~s~ee~~~i~d~L~V~~v~~GTvn~G~~~VGsg~VaNn~G~lvg~~ 212 (228)
T 1g61_A 134 SLNVEVEIGTIAELPTVGSNAVVTN-KGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGD 212 (228)
T ss_dssp HHCSEEEECCBTTBSCTTTSEEECS-SEEEECTTCCHHHHHHHHHHHTCSEEEECCBTTTBSCGGGTEEECSSCEEEETT
T ss_pred hcCCceEEEEeCCccceeeEEEEec-ceEEECCCCCHHHHHHHHHhcCCCeEeeeeeeCCCCceeEEEEEECCEEEECCC
Confidence 7776777888999999999999999 999999999999999999999999 9999998 999999999999999999999
Q ss_pred CCHHHHHHHhhhcCc
Q 027273 145 TSIEDLDELSTLLQV 159 (225)
Q Consensus 145 ~s~eel~~l~d~L~V 159 (225)
++++|+++|+++|+|
T Consensus 213 TT~~El~~Ie~~f~v 227 (228)
T 1g61_A 213 TTGPELLIIEDALGL 227 (228)
T ss_dssp CCHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHhcc
Confidence 999999999999987
No 8
>4a18_J EIF6, translation initiation factor EIF-6, putative FAM protein; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_J 4a1b_J 4a1d_J
Probab=99.97 E-value=2.1e-31 Score=235.01 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=124.0
Q ss_pred cCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhC--ceEEEEeecCceeeeeEEEEcCCe------------------
Q 027273 79 ERLSALGNCIACNDHVALAHTDLDRETEEIIADVLG--VEVFRQTIAGNILVGSYCSFSNRG------------------ 138 (225)
Q Consensus 79 ~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~Lg--VeV~~~tIag~~lVGs~~v~Nn~G------------------ 138 (225)
++++.+|+|+.+||+|||+||+.++++.+.|++.|+ +|+++++|+|+++||+++++|++|
T Consensus 11 ~gs~~IGvf~~~t~~~~lv~~~~~~~~~~~~~~~L~~~v~vv~tsI~gs~lvG~l~~GN~nGllvp~~~~d~El~~l~~~ 90 (248)
T 4a18_J 11 ENSNDIGVFCKLTSAYCLVSVGASENFYSVFESELVPHIPVIHTSIGGTRIVGRVTCGNKNGLLVPNTCNDNELRNIRNS 90 (248)
T ss_dssp TTBSCGGGTEEEETTEEEEETTCCHHHHHHHHHHHTTTSCEEEECSSSCSCHHHHCEEETTEEEECTTCCHHHHHHHHHH
T ss_pred cCCCcEEEEEEEeCCEEEEcCCCCHHHHHHHHHHhcCCccEEEEEecCcceEEEEEEecCCeEEeCCcCCHHHHHHHHhh
Confidence 789999999999999999999999999999999999 999999999999999999998555
Q ss_pred ---------------------------EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCC
Q 027273 139 ---------------------------GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTT 191 (225)
Q Consensus 139 ---------------------------~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT 191 (225)
+||||+++++..+.|+|+||||+.++|| +|+++|||.+++||+|++|||.++
T Consensus 91 l~~~v~v~~~~~r~~alGn~i~aND~~ALV~pdl~~e~~e~I~d~LgVeV~~~tI-ags~lVGs~~v~Nn~G~LVhp~~s 169 (248)
T 4a18_J 91 LPDNVRVRRIEEKLSALGNCVVANDYVALIHPDLDRESEEIIADTLGVEVFRTTI-ANNVLVGTYCVINNRGGLVHPLAS 169 (248)
T ss_dssp SCTTSEEEECCCSSCCHHHHEEECSSEEEECSSCCHHHHHHHHHHHTCEEEECCB-TTBSCHHHHEEECSSCEEECTTCC
T ss_pred CCCCceEEEeCCccccceEEEEEcCcEEEECCCCCHHHHHHHHHhcCCcEEEEEc-CCcceeEEEEEEeCCeEEECCCCC
Confidence 9999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCC
Q 027273 192 ATELSVIESVFKLRE 206 (225)
Q Consensus 192 ~~El~~Ie~~l~v~~ 206 (225)
++|+++|+++|+++.
T Consensus 170 ~eEl~~L~~~l~V~v 184 (248)
T 4a18_J 170 VEELDELANLLQIPL 184 (248)
T ss_dssp HHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHhCCce
Confidence 999999999999985
No 9
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=62.42 E-value=28 Score=32.08 Aligned_cols=106 Identities=9% Similarity=0.078 Sum_probs=70.2
Q ss_pred CCCCHHHHHHHHhhCCCCeeEEEeccCCC---ce-eeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEeecCce---
Q 027273 54 HTTTDQELQHLRNSLPDQVVVQRIEERLS---AL-GNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTIAGNI--- 126 (225)
Q Consensus 54 ~~~~d~El~~l~~~l~~~v~v~~l~~~~~---ai-Gn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tIag~~--- 126 (225)
..++.+.++.|++.|+.+.+|..++.... =+ ..+..+.+..++++|+..++..+.+++. +.+++.....+..
T Consensus 271 ~Rtn~~~ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~-~~~iI~~p~~~~~~~~ 349 (423)
T 1jdw_A 271 QVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA-GWTIITPPTPIIPDDH 349 (423)
T ss_dssp SSCCHHHHHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT-TCEEECCCCCCCCTTS
T ss_pred ccCCHHHHHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC-CCEEEECCCchhcccc
Confidence 45678999999999864566766764322 22 3566788888999998877777777764 7777776543321
Q ss_pred --------eeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceee
Q 027273 127 --------LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV 162 (225)
Q Consensus 127 --------lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~ 162 (225)
+=.-+...| .|.++.|.-.++..+.|++. |.++.
T Consensus 350 ~~~~s~~~~~~N~L~in-pg~VI~~~~~~~~~~~L~~~-G~~Vi 391 (423)
T 1jdw_A 350 PLWMSSKWLSMNVLMLD-EKRVMVDANEVPIQKMFEKL-GITTI 391 (423)
T ss_dssp CCSSSCGGGGGCCEEEE-TTEEEEETTCHHHHHHHHHT-TCEEE
T ss_pred ccccccccceeeEEEEC-CCEEEEeCCCHHHHHHHHHC-CCEEE
Confidence 112223334 36666677788888888886 76544
No 10
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=54.93 E-value=55 Score=28.65 Aligned_cols=105 Identities=11% Similarity=0.172 Sum_probs=63.8
Q ss_pred HHHHHHhh-cCCccEEEEEec-CceEEeeeee-ecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEeccCCCceeeEEEee
Q 027273 15 HSTFEAEL-ADVIPVVKTSIG-GNRIIGRLCV-GNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACN 91 (225)
Q Consensus 15 ~~~i~~~L-~~~v~vv~t~I~-gs~lvG~l~~-gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~N 91 (225)
.+.+++.| + .+|+...+. -.-|=..|+. +...-++-|+...++.++.|++....+.++-.+++. ..+|++.+|
T Consensus 174 i~~l~~~l~~--~~Vv~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI~vpe~--~a~N~L~ln 249 (308)
T 3i4a_A 174 AEILADTFKD--YAVSTVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDD--IAANCIYLN 249 (308)
T ss_dssp HHHHHHHTTT--SCEEEEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSSCCEEEEESSG--GGGCCEEEE
T ss_pred HHHHHHHcCC--CeEEEEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccCCCEEEECChH--HhCCEEEEc
Confidence 67788888 5 666665543 3344555666 555555557666777888898743334556556553 667888887
Q ss_pred --C--cEEEEe-cCCChhHHHHHhhhhCceEEEEeec
Q 027273 92 --D--HVALAH-TDLDRETEEIIADVLGVEVFRQTIA 123 (225)
Q Consensus 92 --d--~~alV~-p~l~~~~~~~I~d~LgVeV~~~tIa 123 (225)
+ +..+++ +.-.+...+.+++.-|.+++...+.
T Consensus 250 ~~~~~~vvi~~~~~~~p~~~~~l~~l~g~~vi~vd~s 286 (308)
T 3i4a_A 250 IPNKGHVLLHRTPEEYPESAKVYEKLKDHMLIPVSMS 286 (308)
T ss_dssp ETTTEEEEEEECTTTCHHHHHHHHHCTTEEEEEECCH
T ss_pred cCCCCCEEEecCcccCcccHHHHHhcCCCEEEEecHH
Confidence 2 344444 3344556666654337888776543
No 11
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=35.13 E-value=2.2e+02 Score=24.67 Aligned_cols=148 Identities=11% Similarity=0.151 Sum_probs=88.2
Q ss_pred CeEEecCCCCH---HHHHHHHhhCCC-CeeEEEecc---CCCceeeEEEeeCcEEE-EecCCChhHHHHHhhhh-CceEE
Q 027273 48 NGLLLPHTTTD---QELQHLRNSLPD-QVVVQRIEE---RLSALGNCIACNDHVAL-AHTDLDRETEEIIADVL-GVEVF 118 (225)
Q Consensus 48 nGllvp~~~~d---~El~~l~~~l~~-~v~v~~l~~---~~~aiGn~i~~Nd~~al-V~p~l~~~~~~~I~d~L-gVeV~ 118 (225)
+|+++.++... .|...++..+.. +.++..+++ -... |.++..++.+.+ ++.-.+++..+.+++.| +-+|+
T Consensus 109 ~~vii~~m~~~~Rr~E~~~~~~~l~~~g~~i~~~~~~~~~lEG-GDvl~~g~~v~vG~s~RTn~~gi~~l~~~l~~~~Vv 187 (308)
T 3i4a_A 109 ETALITRPGAPSRRKEVDMMKEALEKLQLNIVEMKDENATLDG-GDVLFTGREFFVGLSKRTNQRGAEILADTFKDYAVS 187 (308)
T ss_dssp TEEEECCCSSGGGGGGHHHHHHHHHTTTCEEEECCCTTCCCCG-GGEEECSSCEEEEESSSCCHHHHHHHHHHTTTSCEE
T ss_pred CEEEEeCCCchhhhhhHHHHHHHHHHCCCeEEEccCCCCcCcc-ceEEEECCEEEEEEchhcCHHHHHHHHHHcCCCeEE
Confidence 46888777443 355455544422 567776653 3444 999999877333 35567788899999999 77776
Q ss_pred EEee-cCceeeeeEEEEcCCeEEeCCCC-CHHHHHHHhhh--cCceeeeEeeecCccceeeEEEEc--Cc-eEEEcCCC-
Q 027273 119 RQTI-AGNILVGSYCSFSNRGGLVHPHT-SIEDLDELSTL--LQVPLVAGTVNRGSEVIGAGLTVN--DW-TAFCGSDT- 190 (225)
Q Consensus 119 ~~tI-ag~~lVGs~~v~Nn~G~LVhP~~-s~eel~~l~d~--L~V~v~~gTVN~G~~~VGsg~vaN--d~-G~lvg~~T- 190 (225)
...+ +-..+=..++....+-++++|+. +++.++.+++. .+-++..-+-..+.++ +.+| ++ +.++.+.+
T Consensus 188 ~v~~~~~~HLDt~~~~l~~~~~lv~~~~~~~~~l~~l~~~~~~~~~iI~vpe~~a~N~----L~ln~~~~~~vvi~~~~~ 263 (308)
T 3i4a_A 188 TVPVADGLHLKSFCSMAGPNLIAIGSSESAQKALKIMQQMSDHRYDKLTVPDDIAANC----IYLNIPNKGHVLLHRTPE 263 (308)
T ss_dssp EEECCTTCCGGGSEEEEETTEEEEECSHHHHHHHHHHHHTCSSCCEEEEESSGGGGCC----EEEEETTTEEEEEEECTT
T ss_pred EEECCCccChhheEEeeCCCEEEEECchhcHHHHHHHHhhccCCCEEEECChHHhCCE----EEEccCCCCCEEEecCcc
Confidence 6554 44566677777778888888764 34556666652 1223332222234444 5555 32 68887632
Q ss_pred -CHHHHHHHHH
Q 027273 191 -TATELSVIES 200 (225)
Q Consensus 191 -T~~El~~Ie~ 200 (225)
.....+.+++
T Consensus 264 ~~p~~~~~l~~ 274 (308)
T 3i4a_A 264 EYPESAKVYEK 274 (308)
T ss_dssp TCHHHHHHHHH
T ss_pred cCcccHHHHHh
Confidence 2233444554
No 12
>2jer_A Agmatine deiminase; hydrolase, tetramer, AGDI, 5- fold pseudosymmetric structure, agmatine degradation pathway, covalent amidino adduct; HET: AGT; 1.65A {Enterococcus faecalis} SCOP: d.126.1.6
Probab=33.70 E-value=64 Score=29.62 Aligned_cols=104 Identities=24% Similarity=0.353 Sum_probs=61.6
Q ss_pred HHHHHHHhhCCCCeeEEEeccCCC---ceeeEEEeeCcE--EEEe----------------cCCChhHHHHHhhhhCceE
Q 027273 59 QELQHLRNSLPDQVVVQRIEERLS---ALGNCIACNDHV--ALAH----------------TDLDRETEEIIADVLGVEV 117 (225)
Q Consensus 59 ~El~~l~~~l~~~v~v~~l~~~~~---aiGn~i~~Nd~~--alV~----------------p~l~~~~~~~I~d~LgVeV 117 (225)
++.+..|+.++.++.+..++.... ..|-..+.|++. +.+. -+.++...+.+.+.+|+++
T Consensus 69 ~~~~~a~~~l~~~V~~~~~~~~D~W~RD~GP~~v~~~~g~~~~vdf~FN~WGg~~~g~~~~~~~D~~v~~~~~~~~g~~~ 148 (389)
T 2jer_A 69 QQFQNCRRQLPPEITVYEMSNNDAWVRDCGPSFVINDHGEIRGVDWTFNAWGGLVDGLYFPWDQDDLVAQKICEIEHVDS 148 (389)
T ss_dssp TTHHHHHHHSCTTSEEEECCCSSSCHHHHSCEEEECTTSCEEEEEEECCTTTHHHHCSSSCCTTGGGHHHHHHHHHTCCE
T ss_pred HHHHHHHHHccCCcEEEEcCCCCEecccccceEEecCCCCEEEEEeecccccccccccccCccchHHHHHHHHHHcCCCe
Confidence 344567777776777777665433 234444444432 3322 3556778889999999999
Q ss_pred EE-Eee---cCce-eeeeEEEEcCCeEEeC----CCCCHHHH-HHHhhhcCceee
Q 027273 118 FR-QTI---AGNI-LVGSYCSFSNRGGLVH----PHTSIEDL-DELSTLLQVPLV 162 (225)
Q Consensus 118 ~~-~tI---ag~~-lVGs~~v~Nn~G~LVh----P~~s~eel-~~l~d~L~V~v~ 162 (225)
++ ..+ +|+. .-|-=.+.+-..|+++ |..|++++ +.|++.||++-.
T Consensus 149 ~~~~~~vlEGGsi~~DG~GTlltTe~clLn~nRNP~lsk~eiE~~Lk~~LGv~kv 203 (389)
T 2jer_A 149 YRTDDFVLEGGSFHVDGQGTVLTTEMCLLSEGRNPQLSKEAIEQKLCDYLNVEKV 203 (389)
T ss_dssp EEEEEEECCGGGEEECSSSEEEEEHHHHTSTTTCTTSCHHHHHHHHHHHHTCSEE
T ss_pred EecCCeEEccCcEEECCCceEEEEeeeecCCCCCCCcCHHHHHHHHHHHcCCCEE
Confidence 87 332 2221 1222122222335544 45699998 789999999843
No 13
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=32.79 E-value=1e+02 Score=28.30 Aligned_cols=100 Identities=23% Similarity=0.319 Sum_probs=63.8
Q ss_pred HHHHHHHHhhCCCCeeEEEeccCCCc---eeeEEEeeCc----------EEEE----------------ecCCChhHHHH
Q 027273 58 DQELQHLRNSLPDQVVVQRIEERLSA---LGNCIACNDH----------VALA----------------HTDLDRETEEI 108 (225)
Q Consensus 58 d~El~~l~~~l~~~v~v~~l~~~~~a---iGn~i~~Nd~----------~alV----------------~p~l~~~~~~~ 108 (225)
+++.+..|+.|+.++.+..++...+= .|=..+.|++ .+.+ +.+.++..-+.
T Consensus 66 ~~~~~~a~~~l~~~v~~~~~~~nD~W~RD~GP~fv~~~~g~~~~~~~~~~~~vdf~FNgWGgk~~~~y~~~~~D~~va~~ 145 (383)
T 3h7c_X 66 PAQWENARKQLPEDIRVVEMSMNDSWFRDSGPTFIVRKRPVKLSSLNRNIAGIDWNFNAWGGANDGCYNDWSHDLLVSRK 145 (383)
T ss_dssp GGGHHHHHHHSCTTSEEEECCCSSCCHHHHSCEEEECCC-------CCSEEEEEEECCTTTHHHHCSBSCCTTHHHHHHH
T ss_pred HHHHHHHHHhccCCcEEEEcCCCCchhhccCceEEEeCCCccccccccceEEEcceeecCcCcccccCCCCccHHHHHHH
Confidence 34566777788877888877765442 3544455543 3443 23566777888
Q ss_pred HhhhhCceEEEEeecCceeeeeEEEEcCCe-------EEe----CCCCCHHHHHH-HhhhcCce
Q 027273 109 IADVLGVEVFRQTIAGNILVGSYCSFSNRG-------GLV----HPHTSIEDLDE-LSTLLQVP 160 (225)
Q Consensus 109 I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G-------~LV----hP~~s~eel~~-l~d~L~V~ 160 (225)
|.+.++++.++..+ .+=|=..-.|-.| ||+ +|..|++|++. |++.||++
T Consensus 146 v~~~~g~~~~~~~l---VlEGGsIe~DG~GTlltTe~cLLn~nRNP~lsk~eIE~~L~~~LGv~ 206 (383)
T 3h7c_X 146 ILALERIPRFQHSM---ILEGGSIHVDGEGTCLVTEECLLNKNRNPHMSKEQIEEELKKYLGVQ 206 (383)
T ss_dssp HHHHHTCCEEEEEE---ECCGGGEEECSSSEEEEEHHHHTCTTTCTTSCHHHHHHHHHHHHCCC
T ss_pred HHHHhCCCcccCCe---eecCCcEEECCCceEEEEhhhccCCCCCCCCCHHHHHHHHHHHhCCc
Confidence 99999999888643 1111111223333 444 58899999876 89999997
No 14
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=31.33 E-value=1.4e+02 Score=21.37 Aligned_cols=54 Identities=13% Similarity=0.062 Sum_probs=36.9
Q ss_pred eeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhh
Q 027273 41 RLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 111 (225)
Q Consensus 41 ~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d 111 (225)
.+.+|| +|..+++++|+.+-...+.=.++..+.. -.+|+|.-+-.++..+.++.
T Consensus 17 ~l~V~n-----Lp~~~te~~L~~~F~~fG~V~~v~i~~~------------kg~aFVef~~~~~A~~Ai~~ 70 (104)
T 1wex_A 17 VVHVRG-----LCESVVEADLVEALEKFGTICYVMMMPF------------KRQALVEFENIDSAKECVTF 70 (104)
T ss_dssp EEEEES-----CCSSCCHHHHHHHHTTTSCEEEEEEETT------------TTEEEEEESSHHHHHHHHHH
T ss_pred EEEEeC-----CCCCCCHHHHHHHHHhCCCEEEEEEECC------------CCEEEEEECCHHHHHHHHHH
Confidence 356666 8999999999988665432234443432 24899988877777777764
No 15
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.44 E-value=99 Score=22.50 Aligned_cols=51 Identities=10% Similarity=0.183 Sum_probs=38.6
Q ss_pred EEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHH-HhhhcCceeee-Eeeec
Q 027273 96 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDE-LSTLLQVPLVA-GTVNR 168 (225)
Q Consensus 96 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~-l~d~L~V~v~~-gTVN~ 168 (225)
|..|-++++....+++. |-.-..|+|+++..|++. ++.+++|.|.. -|+|.
T Consensus 7 Ik~P~iTEKa~~~~e~~----------------------n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~ 59 (86)
T 3j21_T 7 IIRPVVTEKAISLIEKE----------------------NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLIT 59 (86)
T ss_dssp EEECCCSHHHHHHHHTS----------------------CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEC
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEc
Confidence 66788888888877653 444578999999999875 57899999755 55554
No 16
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=29.63 E-value=81 Score=23.23 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=36.6
Q ss_pred EEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHH-HHhhhcCceeee-Eeeec
Q 027273 96 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 168 (225)
Q Consensus 96 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~-~l~d~L~V~v~~-gTVN~ 168 (225)
|..|-+++++...+++. |-.-..|+|+++..|++ .++.+|+|+|.. -|+|.
T Consensus 11 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~ 63 (93)
T 3r8s_T 11 LRAPHVSEKASTAMEKS----------------------NTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVV 63 (93)
T ss_dssp EEEECCSHHHHHHHHTT----------------------SEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEE
T ss_pred hhccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEe
Confidence 55677777777766652 34457899999999987 568899999754 45543
No 17
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen fixation, nitrogen metabolism, molybdoenzymes, electron transfer; HET: HCA CFM CLF; 1.60A {Klebsiella pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Probab=29.07 E-value=50 Score=31.01 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=46.5
Q ss_pred EEeCCCCCHHHHHHHhhhcCceeeeEeeecCccceeeEEEEcCceEEEcCCCCHHHHHHHHHhhCCCCCCCchhHHHHHH
Q 027273 139 GLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIGAGLTVNDWTAFCGSDTTATELSVIESVFKLREAQPNAIVDEMRK 218 (225)
Q Consensus 139 ~LVhP~~s~eel~~l~d~L~V~v~~gTVN~G~~~VGsg~vaNd~G~lvg~~TT~~El~~Ie~~l~v~~~~~~~~~~~~~~ 218 (225)
++++|.....-.+.|++-+|+|...... |+ |.+-|..-++.|.++||.+. + ...+..|+
T Consensus 287 iv~~~~~~~~~A~~Le~r~GiP~i~~~~----Pi--------------G~~~T~~~L~~la~~~g~~~--~-~~i~~er~ 345 (519)
T 1qgu_B 287 LLLQPWQLLKSKKVVQEMWNQPATEVAI----PL--------------GLAATDELLMTVSQLSGKPI--A-DALTLERG 345 (519)
T ss_dssp EESSTTTCHHHHHHHHHTSCCCCCCCCC----CB--------------SHHHHHHHHHHHHHHHCCCC--C-HHHHHHHH
T ss_pred EEECHHHHHHHHHHHHHHcCCCeEecCC----Cc--------------chHHHHHHHHHHHHHHCCCc--H-HHHHHHHH
Confidence 6678888888889999999999776433 33 77889999999999999864 1 22344444
Q ss_pred Hhhhh
Q 027273 219 SLIDS 223 (225)
Q Consensus 219 ~~~~~ 223 (225)
.++|.
T Consensus 346 ~~~~~ 350 (519)
T 1qgu_B 346 RLVDM 350 (519)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 18
>1bwd_A ADT, protein (inosamine-phosphate amidinotransferase); streptomycin; 3.10A {Streptomyces griseus} SCOP: d.126.1.2
Probab=25.96 E-value=1.6e+02 Score=25.97 Aligned_cols=107 Identities=9% Similarity=0.055 Sum_probs=62.8
Q ss_pred cCCCCHHHHHHHHhhCCCCeeEEEeccCCC--ce-eeEEEeeCcEEEEecCCChhHHHHHhhhh-CceEEEEeecCce--
Q 027273 53 PHTTTDQELQHLRNSLPDQVVVQRIEERLS--AL-GNCIACNDHVALAHTDLDRETEEIIADVL-GVEVFRQTIAGNI-- 126 (225)
Q Consensus 53 p~~~~d~El~~l~~~l~~~v~v~~l~~~~~--ai-Gn~i~~Nd~~alV~p~l~~~~~~~I~d~L-gVeV~~~tIag~~-- 126 (225)
+..++.+.++.|++.|+.+..+..++-..+ =+ ..+..+.+..++++|+..+.. .+.+.| +.+++... ....
T Consensus 195 s~Rt~~~~ie~l~~~l~~~~~v~~~~~~~~~~HlDt~~~~v~~~~vl~~~~~~~~~--~~~~~L~~~~iI~~~-~~~~~~ 271 (348)
T 1bwd_A 195 SDSGNELGAKWLQSAVGDTYTVHPCRKLYASTHVDSTIVPLRPGLVLTNPSRVNDE--NMPDFLRSWENITCP-ELVDIG 271 (348)
T ss_dssp BTTBCHHHHHHHHHHHCTTSEEEEESSSCCSSCGGGTEEEEETTEEEECTTTCCTT--TSCGGGTTSEEEECC-CCCCCC
T ss_pred cccCCHHHHHHHHHHhcCCcEEEEecCCCCCcchhheEEecCCCEEEEeCCCCCcH--HHHHHhcCCEEEECC-Cccccc
Confidence 456689999999999865556666654311 11 256667778888888764321 122333 46677655 1110
Q ss_pred ----------eeeeEEEEcCCeEEeCCCCCHHHHHHHhhhcCceeee
Q 027273 127 ----------LVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA 163 (225)
Q Consensus 127 ----------lVGs~~v~Nn~G~LVhP~~s~eel~~l~d~L~V~v~~ 163 (225)
..++-+..=+.|.++.|...++..+.|++. |.++..
T Consensus 272 ~~~~~~~~~~w~~~N~l~i~~~~Vi~~~~~~~~~~~L~~~-G~~vi~ 317 (348)
T 1bwd_A 272 FTGDKPHCSVWIGMNLLVVRPDLAVVDRRQTALIRLLEKH-GMNVLP 317 (348)
T ss_dssp CCSSSCSSCGGGGGCCEEEETTEEEEETTCHHHHHHHHHT-TCEEEE
T ss_pred cccccccccccceeeEEEEcCCEEEEcCCCHHHHHHHHHC-CCEEEE
Confidence 013333322345566667788888888886 766543
No 19
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=24.53 E-value=1.7e+02 Score=20.89 Aligned_cols=61 Identities=11% Similarity=0.228 Sum_probs=40.8
Q ss_pred eeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhhhhCc
Q 027273 42 LCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIADVLGV 115 (225)
Q Consensus 42 l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgV 115 (225)
+.+|| ||..+++++|+.+=...+.-..+.++.++... --+|+|.-.-.++..+.|+..=|.
T Consensus 8 lfV~n-----Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~--------kg~afV~f~~~~~A~~Ai~~l~~~ 68 (115)
T 4f25_A 8 IFIKN-----LDKSIDNKALYDTFSAFGNILSCKVVCDENGS--------KGYGFVHFETQEAAERAIEKMNGM 68 (115)
T ss_dssp EEEES-----CCTTCCHHHHHHHHGGGSCEEEEEEEEETTEE--------EEEEEEEESCHHHHHHHHHHHTTC
T ss_pred EEECC-----CCCCCCHHHHHHHHhccCCEEEEEEeecCCCC--------CceEEEEECCHHHHHHHHHHcCCC
Confidence 45555 79999999999887665433455555444322 137999988888887877764443
No 20
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=24.52 E-value=1.8e+02 Score=20.35 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=39.9
Q ss_pred cEEEEecCCChhHHHHHhhhhCc--eEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHHHhh
Q 027273 93 HVALAHTDLDRETEEIIADVLGV--EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELST 155 (225)
Q Consensus 93 ~~alV~p~l~~~~~~~I~d~LgV--eV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~l~d 155 (225)
+|.++.-..+.+.++.++..|.. .|+|.-+-...-.-.+ .--.+++|++++|+.+.+-+
T Consensus 6 ~Yvl~~~~a~~~~i~Eler~~rine~VlR~l~vr~d~~r~Y----E~m~Il~P~l~ee~~~~~ve 66 (77)
T 3zzp_A 6 YTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRY----EVNIVLNPNLDQSQLQNEKE 66 (77)
T ss_dssp TEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEEECSSTTEE----EEEEEECTTCCHHHHHHHHH
T ss_pred EEEEEEEEeCHhHHHHHHHHhCCCHHHHHHHHHhccCCCce----EEEEEECCCCCHHHHHHHHH
Confidence 57788888889999999999886 4888543211110011 11488999999998876544
No 21
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=23.01 E-value=1.4e+02 Score=21.56 Aligned_cols=51 Identities=12% Similarity=0.108 Sum_probs=37.3
Q ss_pred EEecCCChhHHHHHhhhhCceEEEEeecCceeeeeEEEEcCCeEEeCCCCCHHHHHH-HhhhcCceeee-Eeeec
Q 027273 96 LAHTDLDRETEEIIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDE-LSTLLQVPLVA-GTVNR 168 (225)
Q Consensus 96 lV~p~l~~~~~~~I~d~LgVeV~~~tIag~~lVGs~~v~Nn~G~LVhP~~s~eel~~-l~d~L~V~v~~-gTVN~ 168 (225)
|..|-+++++...+++. |-.-..|+|+++..|++. ++++++|+|.. -|+|.
T Consensus 6 Ik~P~iTEKa~~~~e~~----------------------n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~ 58 (85)
T 1vq8_S 6 IKHPHVTEKAMNDMDFQ----------------------NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNT 58 (85)
T ss_dssp EEEECCSHHHHHHHHHS----------------------CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEEC
T ss_pred eeccccCHHHHHHHHhC----------------------CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeec
Confidence 56777888877777632 235588999999999875 57789999754 55553
No 22
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=22.23 E-value=69 Score=23.74 Aligned_cols=34 Identities=15% Similarity=0.249 Sum_probs=25.9
Q ss_pred cCCeEEeCCCCCHHHHH-HHhhhcCceeee-Eeeec
Q 027273 135 SNRGGLVHPHTSIEDLD-ELSTLLQVPLVA-GTVNR 168 (225)
Q Consensus 135 Nn~G~LVhP~~s~eel~-~l~d~L~V~v~~-gTVN~ 168 (225)
|+.-..|+|+++..|++ .++++++|+|.. -|+|.
T Consensus 23 n~y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~ 58 (95)
T 2zjr_Q 23 GVYSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNV 58 (95)
T ss_dssp TCCEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCB
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEe
Confidence 45678899999999987 467899999744 45543
No 23
>1jdw_A L-arginine\:glycine amidinotransferase; creatine biosynthesis, catalytic triad, reaction mechanism, novel fold, fivefold pseudosymmetry; 1.90A {Homo sapiens} SCOP: d.126.1.2 PDB: 2jdw_A 3jdw_A* 4jdw_A* 8jdw_A 5jdw_A 6jdw_A* 1jdx_A* 7jdw_A 9jdw_A* 2jdx_A
Probab=21.63 E-value=3.2e+02 Score=24.87 Aligned_cols=103 Identities=9% Similarity=0.080 Sum_probs=64.0
Q ss_pred HHHHHHhhcCCccEEEEEecC---ceEEeeeeeecCCeEEecCCCCHHHHHHHHhhCCCCeeEEEeccCCCc--------
Q 027273 15 HSTFEAELADVIPVVKTSIGG---NRIIGRLCVGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSA-------- 83 (225)
Q Consensus 15 ~~~i~~~L~~~v~vv~t~I~g---s~lvG~l~~gN~nGllvp~~~~d~El~~l~~~l~~~v~v~~l~~~~~a-------- 83 (225)
.+.+++.|++..+|+.....+ .-+=..++.-..+-+++-....++.++.|++. +.++-.++.....
T Consensus 278 ie~L~~~L~~~~~Vi~l~~~d~~~~HLDtv~~~v~~~~vlv~~~~~~~~~~~L~~~---~~~iI~~p~~~~~~~~~~~~s 354 (423)
T 1jdw_A 278 IEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKA---GWTIITPPTPIIPDDHPLWMS 354 (423)
T ss_dssp HHHHHHHHTTTCEEEECCBSSCCSSCSTTTEEEEETTEEEECTTSCBTTHHHHHHT---TCEEECCCCCCCCTTSCCSSS
T ss_pred HHHHHHHhCCCCEEEEEecCCCCCCchhheEEecCCCeEEEecchhHHHHHHHHhC---CCEEEECCCchhccccccccc
Confidence 556888884225666666543 22223344444444554444445667788764 4566556543222
Q ss_pred ----eeeEEEeeCcEEEEecCCChhHHHHHhhhhCceEEEEee
Q 027273 84 ----LGNCIACNDHVALAHTDLDRETEEIIADVLGVEVFRQTI 122 (225)
Q Consensus 84 ----iGn~i~~Nd~~alV~p~l~~~~~~~I~d~LgVeV~~~tI 122 (225)
-.|++..|....|++. -.+.+.+.+++. |.+|+...+
T Consensus 355 ~~~~~~N~L~inpg~VI~~~-~~~~~~~~L~~~-G~~Vi~v~~ 395 (423)
T 1jdw_A 355 SKWLSMNVLMLDEKRVMVDA-NEVPIQKMFEKL-GITTIKVNI 395 (423)
T ss_dssp CGGGGGCCEEEETTEEEEET-TCHHHHHHHHHT-TCEEEEECC
T ss_pred cccceeeEEEECCCEEEEeC-CCHHHHHHHHHC-CCEEEEecH
Confidence 5799989866666655 578889999887 999888654
No 24
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.14 E-value=2.2e+02 Score=21.26 Aligned_cols=48 Identities=13% Similarity=0.210 Sum_probs=34.6
Q ss_pred ecCCCCHHHHHHHHhhCCCCeeEEEeccCCCceeeEEEeeCcEEEEecCCChhHHHHHhh
Q 027273 52 LPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALAHTDLDRETEEIIAD 111 (225)
Q Consensus 52 vp~~~~d~El~~l~~~l~~~v~v~~l~~~~~aiGn~i~~Nd~~alV~p~l~~~~~~~I~d 111 (225)
||..++++||+.+-...+.=.+|..+.++ .+|+|--+-.++..+.++.
T Consensus 39 Lp~~vte~dL~~lF~~fG~V~~v~i~~~k------------G~AFVeF~~~e~A~~Ai~~ 86 (119)
T 2ad9_A 39 LPIDVTEGEVISLGLPFGKVTNLLMLKGK------------NQAFIEMNTEEAANTMVNY 86 (119)
T ss_dssp CCTTCCHHHHHHHHTTTSCCCEEEEEGGG------------TEEEEECSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHhcCCEEEEEEeCCC------------CEEEEEECCHHHHHHHHHH
Confidence 68899999999886654433556655542 5899988877777777763
Done!