BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>027274
METTVKIQPQLQSHCISMNTFVSSKIRTLCTYPFAQHGRTLLVRAAAAGDTTKAAVAAQM
KQNWLDSLTFPPLHVHDLTANQTNADSQWALGIDPDLSGALAVLKSDHNGCSAEVFDTPH
LPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGKQGWWSGGFGYGLWI
GILVASGFSVVPIPSLTWKNWYGLSGGTSTKVCINTLILSVFTCR

High Scoring Gene Products

Symbol, full name Information P value
AT3G43910 protein from Arabidopsis thaliana 3.0e-21
AT3G43900 protein from Arabidopsis thaliana 3.0e-06

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  027274
        (225 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2097129 - symbol:AT3G43910 "AT3G43910" species...   249  3.0e-21   1
TAIR|locus:2097124 - symbol:AT3G43900 "AT3G43900" species...   110  3.0e-06   1


>TAIR|locus:2097129 [details] [associations]
            symbol:AT3G43910 "AT3G43910" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL163975
            IPI:IPI00534221 PIR:T48945 RefSeq:NP_189977.1 UniGene:At.53710
            ProteinModelPortal:Q9LXW8 EnsemblPlants:AT3G43910.1 GeneID:823507
            KEGG:ath:AT3G43910 TAIR:At3g43910 eggNOG:NOG286680
            HOGENOM:HOG000029988 PhylomeDB:Q9LXW8 ProtClustDB:CLSN2914771
            Genevestigator:Q9LXW8 Uniprot:Q9LXW8
        Length = 195

 Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
 Identities = 62/148 (41%), Positives = 88/148 (59%)

Query:    60 MKQNWLDSLTFPPLHVHDLTANQTNADSQWALGIDPDLSGALAVLKSDHNG-CSAEVFDT 118
             MKQ  L+ L+    +  ++   Q N    W +GIDP+LSGALAVLK D  G C A+V+DT
Sbjct:     1 MKQKSLNPLSSSSPNYDEMI--QENFKPHWIIGIDPNLSGALAVLKFDDKGSCFAQVYDT 58

Query:   119 PHLPVLVGKRVRKR-LDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGKQGWWSGGFGYG 177
             P L V+V + +R R  + KSM+ L+RSLD P GT A+V + I +P++    + + G G G
Sbjct:    59 PQLEVVV-QNIRTRSFNEKSMLELIRSLDVPSGTKAFVAKYI-HPENAITAY-NDGLGCG 115

Query:   178 LWIGILVASGFSVVPIPSLTWKNWYGLS 205
             LW   L+ S  SV+ +   TW   + LS
Sbjct:   116 LWT--LLTSSISVIYVTPSTWDKHFNLS 141


>TAIR|locus:2097124 [details] [associations]
            symbol:AT3G43900 "AT3G43900" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL163975
            IPI:IPI00530838 PIR:T48944 RefSeq:NP_189976.1 UniGene:At.53709
            DNASU:823506 EnsemblPlants:AT3G43900.1 GeneID:823506
            KEGG:ath:AT3G43900 TAIR:At3g43900 PhylomeDB:Q9LXW9
            Genevestigator:Q9LXW9 Uniprot:Q9LXW9
        Length = 84

 Score = 110 (43.8 bits), Expect = 3.0e-06, P = 3.0e-06
 Identities = 27/57 (47%), Positives = 35/57 (61%)

Query:    60 MKQNWLDSLTFPPLHVHDLTANQTNADSQWALGIDPDLSGALAVLKSDHNG-CSAEV 115
             MKQ  L+ L+    +  ++   Q N    W +GIDP+LSGALAVLK D  G CSA+V
Sbjct:    27 MKQKLLNPLSSSSPNYDEMI--QENFKPHWIIGIDPNLSGALAVLKFDDKGSCSAQV 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.135   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      225       211   0.00081  112 3  11 22  0.48    32
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  198 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.24u 0.17s 17.41t   Elapsed:  00:00:01
  Total cpu time:  17.24u 0.17s 17.41t   Elapsed:  00:00:01
  Start:  Fri May 10 07:54:37 2013   End:  Fri May 10 07:54:38 2013

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