BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 027274
         (225 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A5FN16|RS4_FLAJ1 30S ribosomal protein S4 OS=Flavobacterium johnsoniae (strain ATCC
           17061 / DSM 2064 / UW101) GN=rpsD PE=3 SV=1
          Length = 201

 Score = 32.3 bits (72), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 89  WALGIDPDLSGALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAP 148
           + +GI P   GA  ++   H   + EV + P   +  G +V  R  +KS+  + RSL   
Sbjct: 100 FRMGIAPSRRGARQIVSHRHITVNGEVVNIPSYHLKPGDKVAVREKSKSLEAIERSLS-- 157

Query: 149 IGTTAYVEQSIPYPQDGKQGWW 170
              +++V + I +  D K+G +
Sbjct: 158 --NSSHVYEWITWNNDLKEGTF 177


>sp|Q3AVJ1|SYFB_SYNS9 Phenylalanine--tRNA ligase beta subunit OS=Synechococcus sp.
           (strain CC9902) GN=pheT PE=3 SV=1
          Length = 807

 Score = 32.0 bits (71), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 19  NTFVSSKIRTLCTYPFAQ----HGRTLLVRAAAAGDTTKAAVAAQMKQNWLDSLTFPPLH 74
            TF+    ++LC  P  Q    H R + +  A    +  +AV+    + WL+S  F P+ 
Sbjct: 293 ETFIGLDDQSLCLDPRVQVVTCHDRAIAI--AGVMGSRDSAVSDSTTKIWLESAMFSPIR 350

Query: 75  VHDLTAN---QTNADSQWALGIDPDLSGALA----VLKSDHNGC 111
           V   +     +T+A S++  G+ P+++ A +     L SD   C
Sbjct: 351 VRQSSRAVGLRTDASSRFEKGLPPEVTLACSQRAIELLSDQFAC 394


>sp|P10121|FTSY_ECOLI Signal recognition particle receptor FtsY OS=Escherichia coli
           (strain K12) GN=ftsY PE=1 SV=1
          Length = 497

 Score = 31.6 bits (70), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 58/124 (46%), Gaps = 17/124 (13%)

Query: 34  FAQHGRTLLVRAAAAGDTTKAAVAAQMKQNWLDSLTFPPLHVHDLTANQTNADSQWAL-- 91
           F Q G+++++   AAGDT +AA   Q+ Q W      P +  H      T ADS   +  
Sbjct: 317 FEQQGKSVML---AAGDTFRAAAVEQL-QVWGQRNNIPVIAQH------TGADSASVIFD 366

Query: 92  GIDPDLSGALAVLKSDHNGCSAEVFDTPHLPVLVGK--RVRKRLDAKSMIMLLRSLDAPI 149
            I    +  + VL +D  G    + +  HL   + K  RV K+LD ++   ++ ++DA  
Sbjct: 367 AIQAAKARNIDVLIADTAGR---LQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAST 423

Query: 150 GTTA 153
           G  A
Sbjct: 424 GQNA 427


>sp|A9GFW6|HUTH_SORC5 Histidine ammonia-lyase OS=Sorangium cellulosum (strain So ce56)
           GN=hutH PE=3 SV=1
          Length = 514

 Score = 31.2 bits (69), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 11/73 (15%)

Query: 76  HDLTANQTNADSQWALGIDPDLSG----ALAVLKSD-----HNGCSAEVFDTPHLPVLVG 126
           HD+ A Q N     A G+ P+L      A+ VL++      H+G   EV D   L  L+ 
Sbjct: 70  HDIRALQRNLVRSHACGVGPELGEAEVRAMIVLRAQVIALGHSGVRTEVLDL--LAALLE 127

Query: 127 KRVRKRLDAKSMI 139
           +RV  R+ A+  +
Sbjct: 128 RRVSPRIPAQGSV 140


>sp|B0CCD5|MURB_ACAM1 UDP-N-acetylenolpyruvoylglucosamine reductase OS=Acaryochloris
           marina (strain MBIC 11017) GN=murB PE=3 SV=1
          Length = 308

 Score = 30.8 bits (68), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 13/33 (39%), Positives = 19/33 (57%)

Query: 88  QWALGIDPDLSGALAVLKSDHNGCSAEVFDTPH 120
           +WA+GI   + GAL +    H GC+A+V    H
Sbjct: 123 EWAVGIPGTVGGALVMNAGAHGGCTADVLTEVH 155


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.423 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,108,289
Number of Sequences: 539616
Number of extensions: 3470606
Number of successful extensions: 7867
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7866
Number of HSP's gapped (non-prelim): 6
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)