Query 027274
Match_columns 225
No_of_seqs 40 out of 42
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 12:08:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hjr_A Holliday junction resol 99.4 9E-13 3.1E-17 108.4 8.2 125 89-223 2-130 (158)
2 4ep4_A Crossover junction endo 99.0 1.9E-09 6.5E-14 89.7 9.0 128 89-223 2-134 (166)
3 1vhx_A Putative holliday junct 92.6 0.42 1.4E-05 38.3 7.6 100 89-202 4-109 (150)
4 3bzc_A TEX; helix-turn-helix, 75.2 4.8 0.00017 40.4 6.5 55 85-147 326-384 (785)
5 1kcf_A Hypothetical 30.2 KD pr 57.1 34 0.0012 29.8 7.6 131 89-222 41-199 (258)
6 3psi_A Transcription elongatio 39.3 64 0.0022 34.1 7.4 82 52-147 485-576 (1219)
7 3psf_A Transcription elongatio 38.4 68 0.0023 33.3 7.4 84 52-147 488-579 (1030)
8 1ik6_A Pyruvate dehydrogenase; 38.3 30 0.001 31.0 4.2 38 112-162 274-311 (369)
9 3zv0_C H/ACA ribonucleoprotein 37.4 1.6E+02 0.0055 24.9 8.4 75 112-202 111-195 (195)
10 1w85_B Pyruvate dehydrogenase 33.9 39 0.0013 29.3 4.2 37 112-161 229-265 (324)
11 1umd_B E1-beta, 2-OXO acid deh 31.5 47 0.0016 28.6 4.3 37 111-160 229-265 (324)
12 2bfd_B 2-oxoisovalerate dehydr 30.0 51 0.0018 28.9 4.3 38 111-161 247-284 (342)
13 1iv0_A Hypothetical protein; r 29.9 73 0.0025 23.6 4.6 87 89-194 2-92 (98)
14 1qs0_B 2-oxoisovalerate dehydr 29.9 46 0.0016 28.9 4.0 37 112-161 244-280 (338)
15 4a6d_A Hydroxyindole O-methylt 28.1 67 0.0023 27.7 4.7 60 137-196 264-334 (353)
16 2o1x_A 1-deoxy-D-xylulose-5-ph 26.8 56 0.0019 31.0 4.3 38 112-162 529-566 (629)
17 2o1s_A 1-deoxy-D-xylulose-5-ph 26.7 43 0.0015 31.7 3.4 38 112-162 526-563 (621)
18 2bjn_A TPC6, trafficking prote 26.0 36 0.0012 27.4 2.4 20 173-192 122-141 (160)
19 2c0j_B R32611_2; palmitate; HE 25.1 36 0.0012 27.5 2.2 22 172-193 121-142 (160)
20 2j3w_B ZGC 92866, trafficking 23.3 44 0.0015 27.8 2.5 21 172-192 140-160 (188)
21 2ozl_B PDHE1-B, pyruvate dehyd 22.6 77 0.0026 27.9 4.1 38 111-161 243-280 (341)
22 2kl0_A Putative thiamin biosyn 22.5 31 0.0011 24.2 1.2 31 122-153 2-32 (73)
23 3mos_A Transketolase, TK; thia 21.7 89 0.003 29.9 4.6 41 110-162 524-564 (616)
24 3cpe_A Terminase, DNA packagin 21.1 1.8E+02 0.006 27.2 6.4 20 86-105 418-442 (592)
25 1sz7_A BET3 homolog, trafficki 21.0 43 0.0015 28.4 2.0 22 170-191 135-156 (200)
No 1
>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6
Probab=99.38 E-value=9e-13 Score=108.42 Aligned_cols=125 Identities=16% Similarity=0.193 Sum_probs=97.6
Q ss_pred cEEEECCCCCc-eEEEEecCCCCceeeeeeCCCcccccccc--cccccCHHHHHHHHHhcCCCCCcEEEEeecccCCCCC
Q 027274 89 WALGIDPDLSG-ALAVLKSDHNGCSAEVFDTPHLPVLVGKR--VRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDG 165 (225)
Q Consensus 89 ~IIGIDPG~sG-ALAvL~~~~~~~~~~V~DmPt~~v~vg~~--~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mPgqG 165 (225)
.|+|||||++. +.++++.+++ ..+.+|.-++... ... .|-..-...+.++|..+. | ..+.||++- -..+
T Consensus 2 ~ILGIDPGl~~tG~gvi~~~g~--~~~~v~~G~i~t~-~~~~~~Rl~~i~~~l~~~i~~~~-P--d~vaiE~vf--~~~n 73 (158)
T 1hjr_A 2 IILGIDPGSRVTGYGVIRQVGR--QLSYLGSGCIRTK-VDDLPSRLKLIYAGVTEIITQFQ-P--DYFAIEQVF--MAKN 73 (158)
T ss_dssp EEEEEECCSSEEEEEEEEEETT--EEEEEEEEEEECC-CSCHHHHHHHHHHHHHHHHHHHC-C--SEEEEEECC--CCCC
T ss_pred EEEEEccCCCCeeEEEEEecCC--eEEEEEeeEEECC-CCCHHHHHHHHHHHHHHHHHHcC-C--CEEEEeecc--cccC
Confidence 48999999977 8999987654 5666665444322 111 223334455677787777 5 789999996 3568
Q ss_pred cceeecccchhHHHHHHHHHhCCeeeEeCchhhHhHh-CCCCCCCchhhHHHhhhhccc
Q 027274 166 KQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWY-GLSGGTSTKVCINTLILSVFT 223 (225)
Q Consensus 166 vqS~fsfG~gyGlw~GVL~A~Gipvv~VtPq~WKk~~-gL~~~gstKd~Sr~~A~~lfp 223 (225)
++|++.+|+.+|++..+++..|+||..++|.+||++. |- ++.+|+....+..++++
T Consensus 74 ~~s~~~lgqarGv~~~a~~~~~ipv~eytp~~vKkavtG~--G~A~K~qV~~mv~~ll~ 130 (158)
T 1hjr_A 74 ADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGI--GSAEKSQVQHMVRTLLK 130 (158)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHTSS--SSCCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHhhCC--CCCcHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999998 55 57889999998888875
No 2
>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A
Probab=98.97 E-value=1.9e-09 Score=89.69 Aligned_cols=128 Identities=16% Similarity=0.220 Sum_probs=91.5
Q ss_pred cEEEECCCCC-ceEEEEecCCCC-ceeeeeeCCCcccccccc--cccccCHHHHHHHHHhcCCCCCcEEEEeecccCCCC
Q 027274 89 WALGIDPDLS-GALAVLKSDHNG-CSAEVFDTPHLPVLVGKR--VRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQD 164 (225)
Q Consensus 89 ~IIGIDPG~s-GALAvL~~~~~~-~~~~V~DmPt~~v~vg~~--~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mPgq 164 (225)
.|+|||||++ =+.+|++.+++. .....+|+-++...-+.- -|-..-...+.++|+.+. | ..+.||++- -+.
T Consensus 2 rILGIDPGl~~tG~gvi~~~g~~~~~~~~v~~G~I~t~~~~~~~~RL~~I~~~l~~~i~~~~-P--d~vaiE~~F--~~~ 76 (166)
T 4ep4_A 2 VVAGIDPGITHLGLGVVAVEGKGALKARLLHGEVVKTSPQEPAKERVGRIHARVLEVLHRFR-P--EAVAVEEQF--FYR 76 (166)
T ss_dssp EEEEEECCSSEEEEEEEEECSSSSSCEEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHHC-C--SEEEEECCC--CSS
T ss_pred EEEEEccccCceEEEEEEecCCccceEEEEEeCeEECCCCCCHHHHHHHHHHHHHHHHHHhC-C--CEEEEeehh--hcc
Confidence 4899999985 499999987641 023333333322110000 112222356677777777 4 788999983 345
Q ss_pred CcceeecccchhHHHHHHHHHhCCeeeEeCchhhHhHh-CCCCCCCchhhHHHhhhhccc
Q 027274 165 GKQGWWSGGFGYGLWIGILVASGFSVVPIPSLTWKNWY-GLSGGTSTKVCINTLILSVFT 223 (225)
Q Consensus 165 GvqS~fsfG~gyGlw~GVL~A~Gipvv~VtPq~WKk~~-gL~~~gstKd~Sr~~A~~lfp 223 (225)
+++|+...|+..|+..-++...|+|+..++|.+||++. |- ++.+|+.-..|..++++
T Consensus 77 n~~sal~lgqarGv~~la~~~~glpv~eytP~~vKkavtG~--G~A~K~QV~~mV~~lL~ 134 (166)
T 4ep4_A 77 QNELAYKVGWALGAVLVAAFEAGVPVYAYGPMQVKQALAGH--GHAAKEEVALMVRGILG 134 (166)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHTCCEEEECHHHHHHHHHSS--TTCCHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHhcCC--CCCCHHHHHHHHHHHhc
Confidence 78999999999999999999999999999999999997 54 56788888888777764
No 3
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=92.62 E-value=0.42 Score=38.30 Aligned_cols=100 Identities=11% Similarity=0.066 Sum_probs=60.7
Q ss_pred cEEEECCCCC-ceEEEEecCCCCce-eeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccCCCCCc
Q 027274 89 WALGIDPDLS-GALAVLKSDHNGCS-AEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYPQDGK 166 (225)
Q Consensus 89 ~IIGIDPG~s-GALAvL~~~~~~~~-~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mPgqGv 166 (225)
.|+|||||.. =++|+.+..+.-.. ..++..+. .|..-+.+.|.++++.+.+ ..++||..- -.+|.
T Consensus 4 riLGiDpG~~riGvAv~d~~g~~a~p~~~I~~~~--------~r~~~~~~~l~~li~~~~~---~~ivVGlP~--~~nGt 70 (150)
T 1vhx_A 4 RILGLDLGTKTLGVALSDEMGWTAQGIETIKINE--------AEGDYGLSRLSELIKDYTI---DKIVLGFPK--NMNGT 70 (150)
T ss_dssp EEEEEEECSSEEEEEEECTTSSSEEEEEEEECBG--------GGTBCCHHHHHHHHTTSEE---EEEEEECCC--CBTTB
T ss_pred EEEEEEccCCEEEEEEEECCCCEEeeEEEEEcCC--------cchHHHHHHHHHHHHHcCC---CEEEEeeee--cCCcc
Confidence 5899999985 57888887654222 33443211 1455678999999998873 667777653 33444
Q ss_pred ceeecccchhHHHHHHHHHhCCeeeE----eCchhhHhHh
Q 027274 167 QGWWSGGFGYGLWIGILVASGFSVVP----IPSLTWKNWY 202 (225)
Q Consensus 167 qS~fsfG~gyGlw~GVL~A~Gipvv~----VtPq~WKk~~ 202 (225)
.+ -..+..-++..-+....++||+. -+|..=|+.+
T Consensus 71 ~~-~~~~~ar~f~~~L~~~~~lpV~~vDEr~Ts~~Ak~~l 109 (150)
T 1vhx_A 71 VG-PRGEASQTFAKVLETTYNVPVVLWDERLTTMAAEKML 109 (150)
T ss_dssp CC-HHHHHHHHHHHHHHHHHCSCEEEECCSSCHHHHHHHH
T ss_pred hh-HHHHHHHHHHHHHHHhhCCCEEEecCCCCHHHHHHHH
Confidence 32 22332223333334446999999 6776666655
No 4
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=75.19 E-value=4.8 Score=40.41 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=35.5
Q ss_pred CCCccEEEECCCC-Cce-EEEEecCCCCceee--eeeCCCcccccccccccccCHHHHHHHHHhcCC
Q 027274 85 ADSQWALGIDPDL-SGA-LAVLKSDHNGCSAE--VFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDA 147 (225)
Q Consensus 85 ~~~~~IIGIDPG~-sGA-LAvL~~~~~~~~~~--V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~ 147 (225)
++.+.|+|+|||. +|. +|+++..|. .++ ++ .|+-| ..+.+=+.+.|.+++..+.+
T Consensus 326 ~~~~~vlg~dpg~r~g~k~a~vd~~G~--~l~~~~i-y~~~~-----~~~~~~~~~~l~~li~~~~~ 384 (785)
T 3bzc_A 326 AGPRATLGLDPGLRTGVKVAVVDATGK--LLDTATV-YPHAP-----KNQWDQTLAVLAALCAKHQV 384 (785)
T ss_dssp CCSCCEEEEECCSSSCEEEEEECTTSC--EEEEEEE-CCSGG-----GCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCCcCceEEEEECCCCC--EEEEEEE-ecCCc-----hhHHHHHHHHHHHHHHHcCC
Confidence 4456899999995 664 678877664 333 22 46654 11233456788888988873
No 5
>1kcf_A Hypothetical 30.2 KD protein C25G10.02 in chromosome I; beta-alpha-beta motif, RUVC resolvase family, hydrolase; 2.30A {Schizosaccharomyces pombe} SCOP: a.140.2.1 c.55.3.7
Probab=57.09 E-value=34 Score=29.80 Aligned_cols=131 Identities=10% Similarity=0.046 Sum_probs=66.1
Q ss_pred cEEEECCCCCc-eEEEEecCCCC----ceeeeeeCCCcccccccccccccCHHHHH----HHHHhc-CCCCCcEEEEeec
Q 027274 89 WALGIDPDLSG-ALAVLKSDHNG----CSAEVFDTPHLPVLVGKRVRKRLDAKSMI----MLLRSL-DAPIGTTAYVEQS 158 (225)
Q Consensus 89 ~IIGIDPG~sG-ALAvL~~~~~~----~~~~V~DmPt~~v~vg~~~RkrlDaksl~----~lLr~l-~~P~gt~a~lEkv 158 (225)
-|++||.|+.= |.|.++.++.. --++.+|....+ ..+.+.+..+.+..+. .+++.+ ..+.-+++.||+.
T Consensus 41 sIlSID~GikNlAyc~l~~~~~~~p~l~~W~kl~l~~~~-~~~~~~k~~~~p~~~~~~a~~Li~~ll~~~~pd~vlIErQ 119 (258)
T 1kcf_A 41 RVLGIDLGIKNFSYCFASQNEDSKVIIHNWSVENLTEKN-GLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQ 119 (258)
T ss_dssp SEEEEEECSTTEEEEEEEECTTSCEEEEEEEEECTTSCC-TTCCCCCCCCSHHHHHHHHHHHHHHHHHHHCCSEEEEEEC
T ss_pred cEEEEecCCCceEEEEEccCCCCCCeeecceeecccccc-ccccccccCcChHHHHHHHHHHHHHhhccCCCCEEEEeec
Confidence 89999999864 88999853211 114555655432 0000122345444332 234433 1123389999999
Q ss_pred ccCCCCCcceeecccchhHHHHH----HHHH----------hCCeeeEeCchhhHhHh----CCCCCCCchhhHHHhhhh
Q 027274 159 IPYPQDGKQGWWSGGFGYGLWIG----ILVA----------SGFSVVPIPSLTWKNWY----GLSGGTSTKVCINTLILS 220 (225)
Q Consensus 159 ~~mPgqGvqS~fsfG~gyGlw~G----VL~A----------~Gipvv~VtPq~WKk~~----gL~~~gstKd~Sr~~A~~ 220 (225)
....+ ..+-+.---..++++| +|.+ ....|..|.|+.=-+++ +-......|..+..+..+
T Consensus 120 r~Rs~--~s~v~e~~Lrv~ilE~ML~a~l~~~~~~~~~~~~~~~~V~~~~p~~v~~yw~~~~~~~~~~~~Kk~~i~lv~~ 197 (258)
T 1kcf_A 120 RYRSG--IATIPEWTLRVNMLESMLYALHYAEKRNSIEQKIQYPFLLSLSPKSTYSYWASVLNTKASFSKKKSRVQMVKE 197 (258)
T ss_dssp CCCTT--TCCHHHHHHHHHHHHHHHHHHHHHHHHC-------CCEEEECCHHHHHHHHHHHHC-------CCCHHHHHHH
T ss_pred CcccC--cccccchhhhHhHHHHHHHHHHHHHHhhcccccccceeEEecCHHHHHHhhhhcccccchhHHHHHHHHHHHH
Confidence 76666 2233333233333333 3333 22568889997755554 322223456666666655
Q ss_pred cc
Q 027274 221 VF 222 (225)
Q Consensus 221 lf 222 (225)
++
T Consensus 198 ~L 199 (258)
T 1kcf_A 198 LI 199 (258)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 6
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=39.25 E-value=64 Score=34.09 Aligned_cols=82 Identities=10% Similarity=0.147 Sum_probs=46.6
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCccccccCCCC-CccEEEECCCCC-----ce-EEEEecCCCCceee---eeeCCCc
Q 027274 52 TKAAVAAQMKQNWLDSLTFPPLHVHDLTANQTNAD-SQWALGIDPDLS-----GA-LAVLKSDHNGCSAE---VFDTPHL 121 (225)
Q Consensus 52 ~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~~~~~-~~~IIGIDPG~s-----GA-LAvL~~~~~~~~~~---V~DmPt~ 121 (225)
++..+.....+|..+-|.-+|-..+ . ..| ...|+|||||.+ |. +|+++..|. .++ +++.|+
T Consensus 485 Ae~~ai~~f~~nL~~lL~~aP~~p~-~-----~lg~~~~VlaldpG~r~~g~~g~k~a~vD~~G~--vl~~~~i~~~~~- 555 (1219)
T 3psi_A 485 CQKLVAKTVRHKFMTKLDQAPFIPN-V-----RDPKIPKILSLTCGQGRFGADAIIAVYVNRKGD--FIRDYKIVDNPF- 555 (1219)
T ss_dssp HHHHHHHHHHHHHHHHHCBCCCCSS-S-----SSCCCCCEEEEECTTCCTTTTCEEEEEECTTSC--EEEEEEECSCTT-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC-c-----ccCCCCeEEEecCCCCCCCCCceEEEEECCCCC--EEEEEEEcCCCC-
Confidence 4444555667777666665552111 1 112 347999999986 44 578887765 333 234454
Q ss_pred ccccccccccccCHHHHHHHHHhcCC
Q 027274 122 PVLVGKRVRKRLDAKSMIMLLRSLDA 147 (225)
Q Consensus 122 ~v~vg~~~RkrlDaksl~~lLr~l~~ 147 (225)
+ .. +++-..+.|..++..+.+
T Consensus 556 ~--~~---~~~~a~~~l~~li~~~~~ 576 (1219)
T 3psi_A 556 D--KT---NPEKFEDTLDNIIQSCQP 576 (1219)
T ss_dssp C--SS---CSHHHHHHHHHHHHHHCC
T ss_pred C--hh---hHHHHHHHHHHHHHHcCC
Confidence 2 11 122234778888888873
No 7
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=38.41 E-value=68 Score=33.27 Aligned_cols=84 Identities=10% Similarity=0.120 Sum_probs=46.4
Q ss_pred hHHHHHHhhhhcccccccCCCCCCCccccccCCCC-CccEEEECCCCC-----ce-EEEEecCCCCceee-eeeCCCccc
Q 027274 52 TKAAVAAQMKQNWLDSLTFPPLHVHDLTANQTNAD-SQWALGIDPDLS-----GA-LAVLKSDHNGCSAE-VFDTPHLPV 123 (225)
Q Consensus 52 ~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~~~~~~-~~~IIGIDPG~s-----GA-LAvL~~~~~~~~~~-V~DmPt~~v 123 (225)
++..+.....+|..+-|.-+|-..+ . ..| ...|+|||||.+ |. +|+++..|..-... +++.|+ +
T Consensus 488 Ae~~ai~~f~~nL~~lL~~aP~~p~-~-----~~g~~~~VlaldpG~~~~~~~g~k~a~vd~~G~~l~~~~i~~~~~-~- 559 (1030)
T 3psf_A 488 CQKLVAKTVRHKFMTKLDQAPFIPN-V-----RDPKIPKILSLTCGQGRFGADAIIAVYVNRKGDFIRDYKIVDNPF-D- 559 (1030)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCCCSC-T-----TSCCCCCEEEEECTTCCTTTSCEEEEEECTTSCEEEEEEECSCTT-C-
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCC-c-----ccCCCCeEEEecCCCCCCCCCCeEEEEECCCCCEEEEEEEcCCCC-C-
Confidence 4444556667777766665552111 1 112 347999999985 44 57888776521122 334454 2
Q ss_pred ccccccccccCHHHHHHHHHhcCC
Q 027274 124 LVGKRVRKRLDAKSMIMLLRSLDA 147 (225)
Q Consensus 124 ~vg~~~RkrlDaksl~~lLr~l~~ 147 (225)
..+ ++-..+.+..++..+.+
T Consensus 560 -~~~---~~~~~~~l~~li~~~~~ 579 (1030)
T 3psf_A 560 -KTN---PEKFEDTLDNIIQSCQP 579 (1030)
T ss_dssp -SSC---CHHHHHHHHHHHHHHCC
T ss_pred -hhh---HHHHHHHHHHHHHHcCC
Confidence 111 22234778888888873
No 8
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=38.31 E-value=30 Score=31.00 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=31.3
Q ss_pred eeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccCC
Q 027274 112 SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYP 162 (225)
Q Consensus 112 ~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mP 162 (225)
.++|+|++++ +-+|.+.+.+.++... .++++|+...+.
T Consensus 274 ~v~Vi~~~~l---------~P~d~~~i~~~~~~~~----~vvvvEe~~~~G 311 (369)
T 1ik6_A 274 SVEVVDLQTL---------NPLDFDTVLKSVSKTG----RLIIAHDSPKTG 311 (369)
T ss_dssp CEEEEECCEE---------ETTCHHHHHHHHHHHC----CEEEEEEEESTT
T ss_pred CeEEEeeeec---------CCCCHHHHHHHHhccC----eEEEEecCCcCC
Confidence 5899999999 6789999999988655 678889887553
No 9
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=37.38 E-value=1.6e+02 Score=24.94 Aligned_cols=75 Identities=20% Similarity=0.254 Sum_probs=40.0
Q ss_pred eeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecc----cCCCCCcceeecccchhHHHHHHHHHh-
Q 027274 112 SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSI----PYPQDGKQGWWSGGFGYGLWIGILVAS- 186 (225)
Q Consensus 112 ~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~----~mPgqGvqS~fsfG~gyGlw~GVL~A~- 186 (225)
.+.|+|.-...|.+|. -..+...|.. ...|..|-+++|. .||. +|.+|- ...-+=.|.+.
T Consensus 111 ~V~V~~~~G~~IAvG~---a~~sS~Ei~~------~~kG~aVkv~rVimd~~~Yp~-----~W~~gp-~~~~k~~~~~~g 175 (195)
T 3zv0_C 111 EIVLITTKGEAIAVAI---AQMSTVDLAS------CDHGVVASVKRCIMERDLYPR-----RWGLGP-VAQKKKQMKADG 175 (195)
T ss_dssp EEEEECTTCCEEEEEE---ESSCHHHHHH------CSSSEEEEEEEECBCTTSSCC-----CCSSCC-HHHHHHHHHHHT
T ss_pred EEEEEcCCCCEEEEEE---EcCCHHHHhh------cCCcEEEEEEEEEeCCCCcCc-----ccccCc-HHHHHHHHHHcc
Confidence 5666665555666663 5677776654 2478899999983 5665 677773 23333334444
Q ss_pred -----CCeeeEeCchhhHhHh
Q 027274 187 -----GFSVVPIPSLTWKNWY 202 (225)
Q Consensus 187 -----Gipvv~VtPq~WKk~~ 202 (225)
|-| --.+|+.|.+.|
T Consensus 176 ~~~k~~~~-~~~~~~~~~~~~ 195 (195)
T 3zv0_C 176 KLDKYGRV-NENTPEQWKKEY 195 (195)
T ss_dssp CSCTTSCC-CCC---------
T ss_pred cccccCCC-CCCChhHhhhcC
Confidence 456 567999998754
No 10
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=33.93 E-value=39 Score=29.25 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=30.6
Q ss_pred eeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccC
Q 027274 112 SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPY 161 (225)
Q Consensus 112 ~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~m 161 (225)
.++|+|++++ +-+|.+.+.+.++... .++++|+...+
T Consensus 229 ~v~vi~~~~l---------~P~d~~~i~~~~~~~~----~vvvvEe~~~~ 265 (324)
T 1w85_B 229 SAEVVDLRTV---------QPLDIETIIGSVEKTG----RAIVVQEAQRQ 265 (324)
T ss_dssp CEEEEECSEE---------ESCCHHHHHHHHHHHS----CEEEEEEEETT
T ss_pred CEEEEEeeee---------cCCCHHHHHHHHhhCC----cEEEEeCCCcC
Confidence 5889999999 6789999999998665 58888988644
No 11
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=31.51 E-value=47 Score=28.62 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=30.4
Q ss_pred ceeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeeccc
Q 027274 111 CSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIP 160 (225)
Q Consensus 111 ~~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~ 160 (225)
-.++|+|++++ +-+|.+.+.+.++... .++++|+-..
T Consensus 229 i~v~vi~~~~l---------~P~d~~~i~~~~~~~~----~vv~vEe~~~ 265 (324)
T 1umd_B 229 VSAEVLDLRTL---------MPWDYEAVMNSVAKTG----RVVLVSDAPR 265 (324)
T ss_dssp CCEEEEECCEE---------ETCCHHHHHHHHHHHS----CEEEEEEEES
T ss_pred CCEEEEEecee---------cCCCHHHHHHHHhcCC----eEEEEecCCc
Confidence 35899999999 6789999999888655 6888998753
No 12
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=30.01 E-value=51 Score=28.89 Aligned_cols=38 Identities=13% Similarity=0.064 Sum_probs=30.6
Q ss_pred ceeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccC
Q 027274 111 CSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPY 161 (225)
Q Consensus 111 ~~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~m 161 (225)
-.++|+|++++ +-+|.+.+.+.++... .++++|+-..+
T Consensus 247 i~v~vi~~~~l---------~P~d~~~i~~~~~~~~----~vv~vEe~~~~ 284 (342)
T 2bfd_B 247 VSCEVIDLRTI---------IPWDVDTICKSVIKTG----RLLISHEAPLT 284 (342)
T ss_dssp CCEEEEECCEE---------ESCCHHHHHHHHHHHS----CEEEEEEEEST
T ss_pred CCEEEEeeeec---------CCCCHHHHHHHHhcCC----EEEEEEeCccC
Confidence 35899999999 6799999999988655 68888987543
No 13
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=29.92 E-value=73 Score=23.57 Aligned_cols=87 Identities=15% Similarity=0.031 Sum_probs=45.3
Q ss_pred cEEEECCCCC-ceEEEEecCCCCceeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccCC--CCC
Q 027274 89 WALGIDPDLS-GALAVLKSDHNGCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYP--QDG 165 (225)
Q Consensus 89 ~IIGIDPG~s-GALAvL~~~~~~~~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mP--gqG 165 (225)
.++|||+|.. =++|+-+..+. + -.|.-.|. .+ ...-|.+.|.+++++..+ ..+ |..+| .||
T Consensus 2 riLglD~G~kriGvAvsd~~~~--~----A~pl~ti~--~~-~~~~~~~~l~~li~e~~v---~~i----VvGlP~~mdG 65 (98)
T 1iv0_A 2 RVGALDVGEARIGLAVGEEGVP--L----ASGRGYLV--RK-TLEEDVEALLDFVRREGL---GKL----VVGLPLRTDL 65 (98)
T ss_dssp CEEEEEESSSEEEEEEECSCCS--S----CCCEEEEE--CC-CHHHHHHHHHHHHHHHTC---CEE----EEECCCCCCS
T ss_pred cEEEEEeCCCEEEEEEEeCCCC--e----eeeeEEEE--cc-CcHHHHHHHHHHHHHcCC---CEE----EEeeccCCCC
Confidence 3899999976 46888766542 2 12222111 00 123467788888887763 222 24455 334
Q ss_pred cce-eecccchhHHHHHHHHHhCCeeeEeC
Q 027274 166 KQG-WWSGGFGYGLWIGILVASGFSVVPIP 194 (225)
Q Consensus 166 vqS-~fsfG~gyGlw~GVL~A~Gipvv~Vt 194 (225)
..+ +..-=..|+-- |...++||++|.
T Consensus 66 t~~~~~~~~~~f~~~---L~~~~lpV~~~D 92 (98)
T 1iv0_A 66 KESAQAGKVLPLVEA---LRARGVEVELWD 92 (98)
T ss_dssp SSCCCSSTTHHHHHH---HHHTTCEEEEEC
T ss_pred CcCHHHHHHHHHHHH---HhcCCCCEEEEC
Confidence 332 22222344432 222289998875
No 14
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=29.91 E-value=46 Score=28.87 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=30.1
Q ss_pred eeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccC
Q 027274 112 SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPY 161 (225)
Q Consensus 112 ~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~m 161 (225)
.++|+|++++ +-+|.+.+.+.++... .++++|+...+
T Consensus 244 ~v~vi~~~~l---------~P~d~~~i~~~~~~~~----~vvvvEe~~~~ 280 (338)
T 1qs0_B 244 DAEVIDLRSL---------WPLDLDTIVESVKKTG----RCVVVHEATRT 280 (338)
T ss_dssp CCEEEECSEE---------ESCCHHHHHHHHHHHS----CEEEEESSCST
T ss_pred CEEEEeeccc---------CCCCHHHHHHHHhcCC----EEEEEecCCcC
Confidence 5789999998 6789999999998665 68899976543
No 15
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=28.12 E-value=67 Score=27.67 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=38.0
Q ss_pred HHHHHHHhcCCCCCcEEEEeecccCCCCCcc--e-----eec-c-c--chhHHHHHHHHHhCCeeeEeCch
Q 027274 137 SMIMLLRSLDAPIGTTAYVEQSIPYPQDGKQ--G-----WWS-G-G--FGYGLWIGILVASGFSVVPIPSL 196 (225)
Q Consensus 137 sl~~lLr~l~~P~gt~a~lEkv~~mPgqGvq--S-----~fs-f-G--~gyGlw~GVL~A~Gipvv~VtPq 196 (225)
.|+.-++..-.|.|.++++|.+.+=++.+-. . |+. + | ++..-|..+|...||..+-|.|-
T Consensus 264 ~iL~~~~~al~pgg~lli~e~~~~~~~~~~~~~~~~dl~ml~~~~g~ert~~e~~~ll~~AGf~~v~v~~~ 334 (353)
T 4a6d_A 264 HLLERIYHTCKPGGGILVIESLLDEDRRGPLLTQLYSLNMLVQTEGQERTPTHYHMLLSSAGFRDFQFKKT 334 (353)
T ss_dssp HHHHHHHHHCCTTCEEEEEECCCCTTSCCCHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHhhCCCCCEEEEEEeeeCCCCCCCHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEc
Confidence 3444444444499999999998632222211 1 111 1 1 46778999999999999888653
No 16
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=26.84 E-value=56 Score=31.04 Aligned_cols=38 Identities=16% Similarity=0.099 Sum_probs=31.4
Q ss_pred eeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccCC
Q 027274 112 SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYP 162 (225)
Q Consensus 112 ~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mP 162 (225)
.++|+|+|++ +-+|.+.+.+.++... .+++||+...+.
T Consensus 529 ~~~Vi~~~~~---------~Pld~~~i~~~~~~~~----~vv~vEe~~~~g 566 (629)
T 2o1x_A 529 GVGVVNARFV---------KPLDEEMLREVGGRAR----ALITVEDNTVVG 566 (629)
T ss_dssp TEEEEECCEE---------ESCCHHHHHHHHHHCS----EEEEEEEEESSS
T ss_pred CCEEEeeCCC---------CCCcHHHHHHHHhhCC----cEEEEecCCCCC
Confidence 4799999999 6799999999988543 789999987654
No 17
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=26.66 E-value=43 Score=31.74 Aligned_cols=38 Identities=21% Similarity=0.245 Sum_probs=31.4
Q ss_pred eeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccCC
Q 027274 112 SAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYP 162 (225)
Q Consensus 112 ~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mP 162 (225)
.++|+|++++ +-+|.+.+.+.++... .+++||+...+.
T Consensus 526 ~v~Vi~~~~~---------~P~d~~~i~~~~~~~~----~vv~vEe~~~~g 563 (621)
T 2o1s_A 526 NATLVDMRFV---------KPLDEALILEMAASHE----ALVTVEENAIMG 563 (621)
T ss_dssp TCEEEECCEE---------ESCCHHHHHHHHHHCS----EEEEEEEEESTT
T ss_pred CEEEEecCcc---------CCCCHHHHHHHHccCC----eEEEEECCCCCC
Confidence 4789999999 6799999999998544 789999987654
No 18
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=25.98 E-value=36 Score=27.43 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.4
Q ss_pred cchhHHHHHHHHHhCCeeeE
Q 027274 173 GFGYGLWIGILVASGFSVVP 192 (225)
Q Consensus 173 G~gyGlw~GVL~A~Gipvv~ 192 (225)
-+-.|++.|+|..+||+..+
T Consensus 122 ~f~cGiIrGaL~~~g~~~~V 141 (160)
T 2bjn_A 122 AFTCGLIRGGLSNLGIKSIV 141 (160)
T ss_dssp HHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHCCCceEE
Confidence 36679999999999999864
No 19
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=25.05 E-value=36 Score=27.50 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=18.3
Q ss_pred ccchhHHHHHHHHHhCCeeeEe
Q 027274 172 GGFGYGLWIGILVASGFSVVPI 193 (225)
Q Consensus 172 fG~gyGlw~GVL~A~Gipvv~V 193 (225)
.-+-.|+++|+|..+||+..+-
T Consensus 121 ~~f~cGiIrGaL~~lg~~~~Vt 142 (160)
T 2c0j_B 121 LAFTCGLLRGALYTLGIESVVT 142 (160)
T ss_dssp THHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHHHHHHHHHHCCCceEEE
Confidence 3466799999999999998753
No 20
>2j3w_B ZGC 92866, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Brachydanio rerio} SCOP: d.278.1.2 PDB: 2j3r_B*
Probab=23.25 E-value=44 Score=27.84 Aligned_cols=21 Identities=33% Similarity=0.438 Sum_probs=17.6
Q ss_pred ccchhHHHHHHHHHhCCeeeE
Q 027274 172 GGFGYGLWIGILVASGFSVVP 192 (225)
Q Consensus 172 fG~gyGlw~GVL~A~Gipvv~ 192 (225)
.-+-.|++.|+|+.+||+..+
T Consensus 140 ~~f~cGiIrGaL~~~g~~~~V 160 (188)
T 2j3w_B 140 AAFTGGIVEAILTHSGFPAKV 160 (188)
T ss_dssp HHHHHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCceEE
Confidence 346789999999999999653
No 21
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=22.55 E-value=77 Score=27.86 Aligned_cols=38 Identities=16% Similarity=0.251 Sum_probs=30.7
Q ss_pred ceeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccC
Q 027274 111 CSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPY 161 (225)
Q Consensus 111 ~~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~m 161 (225)
-.+.|+|++++ +-+|.+.+.+.++... .++.+|+-..+
T Consensus 243 i~v~vv~~~~l---------~P~d~~~i~~~~~~~~----~vv~vEe~~~~ 280 (341)
T 2ozl_B 243 VECEVINMRTI---------RPMDMETIEASVMKTN----HLVTVEGGWPQ 280 (341)
T ss_dssp CCEEEEECCEE---------ETCCHHHHHHHHHHHS----CEEEECSSCST
T ss_pred CCeEEEeeeee---------cCCCHHHHHHHHhcCC----eEEEEecCccc
Confidence 35889999999 6789999999988654 68889987643
No 22
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=22.47 E-value=31 Score=24.24 Aligned_cols=31 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred ccccccccccccCHHHHHHHHHhcCCCCCcEE
Q 027274 122 PVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTA 153 (225)
Q Consensus 122 ~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a 153 (225)
+|.++++.+. +++..+.++|..+..+...+|
T Consensus 2 ~I~vNG~~~e-~~~~Tl~~LL~~l~~~~~~vA 32 (73)
T 2kl0_A 2 LVTINGEQRE-VQSASVAALMTELDCTGGHFA 32 (73)
T ss_dssp CEEETTEEEC-CCCSBHHHHHHHTTCCSSSCE
T ss_pred EEEECCEEEE-cCCCcHHHHHHHcCCCCCcEE
Confidence 4556665433 377788999999987654444
No 23
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=21.70 E-value=89 Score=29.89 Aligned_cols=41 Identities=24% Similarity=0.205 Sum_probs=32.7
Q ss_pred CceeeeeeCCCcccccccccccccCHHHHHHHHHhcCCCCCcEEEEeecccCC
Q 027274 110 GCSAEVFDTPHLPVLVGKRVRKRLDAKSMIMLLRSLDAPIGTTAYVEQSIPYP 162 (225)
Q Consensus 110 ~~~~~V~DmPt~~v~vg~~~RkrlDaksl~~lLr~l~~P~gt~a~lEkv~~mP 162 (225)
|..++|+|+.++ +-+|.+.|.+.++... +.+++||+...+.
T Consensus 524 Gi~v~Vidlr~l---------~PlD~e~i~~~~~~~~---~~vvvvEe~~~~G 564 (616)
T 3mos_A 524 KINIRVLDPFTI---------KPLDRKLILDSARATK---GRILTVEDHYYEG 564 (616)
T ss_dssp TCEEEEEECSEE---------ESCCHHHHHHHHHHTT---TEEEEEEEEESTT
T ss_pred CCCEEEEEeCcc---------CCCCHHHHHHHHHhcC---CEEEEEcCCCCCc
Confidence 457899999999 6799999999998651 3789999976443
No 24
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=21.13 E-value=1.8e+02 Score=27.15 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=14.1
Q ss_pred CCccEEEECC--CCCc---eEEEEe
Q 027274 86 DSQWALGIDP--DLSG---ALAVLK 105 (225)
Q Consensus 86 ~~~~IIGIDP--G~sG---ALAvL~ 105 (225)
+..+++|+|| |.++ |++++.
T Consensus 418 ~~~~~~GvD~S~G~~~D~tai~v~~ 442 (592)
T 3cpe_A 418 DRKYIATLDCSEGRGQDYHALHIID 442 (592)
T ss_dssp TCCEEEEEECCSSBTTBCEEEEEEE
T ss_pred CceEEEEEecCCCCCCCceEEEEEE
Confidence 5678999999 5455 566664
No 25
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=21.02 E-value=43 Score=28.38 Aligned_cols=22 Identities=18% Similarity=0.137 Sum_probs=17.8
Q ss_pred ecccchhHHHHHHHHHhCCeee
Q 027274 170 WSGGFGYGLWIGILVASGFSVV 191 (225)
Q Consensus 170 fsfG~gyGlw~GVL~A~Gipvv 191 (225)
+-.-+-.|++.|+|..+||+|.
T Consensus 135 ~y~~f~cGIIrGaL~~lg~~Vt 156 (200)
T 1sz7_A 135 IYSNLLCGVLRGALEMVQMAVE 156 (200)
T ss_dssp CTTTHHHHHHHHHHHTTTEEEE
T ss_pred chhhhHHHHHHHHHHhCCCEEE
Confidence 3345778999999999999943
Done!