BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027275
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HST|A Chain A, Crystal Structure Of Globular Domain Of Histone H5 And Its
Implications For Nucleosome Binding
pdb|1HST|B Chain B, Crystal Structure Of Globular Domain Of Histone H5 And Its
Implications For Nucleosome Binding
Length = 90
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 130 PAPLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAEKGI 189
P E +A I G++R + K K+ + +GH D I+L+ +R+ L G+
Sbjct: 8 PTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLS--IRRLLAA---GV 62
Query: 190 LKERKLVGSSSRMPLTKS 207
LK+ K VG+S L KS
Sbjct: 63 LKQTKGVGASGSFRLAKS 80
>pdb|3K96|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
pdb|3K96|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Glycerol-3-Phosphate Dehydrogenase (Gpsa) From Coxiella
Burnetii
Length = 356
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 8/129 (6%)
Query: 81 EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQI 140
E + R + D+KT + + +G L +V T +V GP+ E+A +
Sbjct: 114 EVITRMKPLIDAKTRIAWGTKGLAKGSRLLHEVVATEL-GQVPMAVISGPSLATEVAANL 172
Query: 141 ATAVGPCGNN----RDYLFKLEKAMFDIGHEDDYI-IELANEVRKELGTAEKGILKERKL 195
TAV NN +D + +L F + DD I +EL V+ L A GI KL
Sbjct: 173 PTAVSLASNNSQFSKDLIERLHGQRFRVYKNDDMIGVELCGSVKNILAIA-TGISDGLKL 231
Query: 196 VGSSSRMPL 204
GS++R L
Sbjct: 232 -GSNARAAL 239
>pdb|3GAK|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAK|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
pdb|3GAY|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
pdb|3GAY|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Co Tagatose-1,6-Biphosphate
Length = 323
Score = 30.0 bits (66), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 105 SQPALTGVI--VFTSTPDKVSNKYYLGPA--PLEEMARQIATAVGPCGNNRDY-LFKLEK 159
S+ A+TG I VF P+K + YLGP + EM A G G+ DY + LE+
Sbjct: 258 SRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHAGDYKVVSLEE 317
Query: 160 A 160
A
Sbjct: 318 A 318
>pdb|3GB6|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
pdb|3GB6|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase
D83a Complex With Fructose-1,6-Bisphosphate
Length = 323
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 105 SQPALTGVI--VFTSTPDKVSNKYYLGPA--PLEEMARQIATAVGPCGNNRDY-LFKLEK 159
S+ A+TG I VF P+K + YLGP + EM A G G+ DY + LE+
Sbjct: 258 SRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHAGDYKVVSLEE 317
Query: 160 A 160
A
Sbjct: 318 A 318
>pdb|2ISV|A Chain A, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISV|B Chain B, Structure Of Giardia Fructose-1,6-biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|2ISW|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With Phosphoglycolohydroxamate
pdb|3OHI|A Chain A, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
pdb|3OHI|B Chain B, Structure Of Giardia Fructose-1,6-Biphosphate Aldolase In
Complex With 3-Hydroxy-2-Pyridone
Length = 323
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 105 SQPALTGVI--VFTSTPDKVSNKYYLGPA--PLEEMARQIATAVGPCGNNRDY-LFKLEK 159
S+ A+TG I VF P+K + YLGP + EM A G G+ DY + LE+
Sbjct: 258 SRMAMTGAIRKVFVEHPEKFDPRDYLGPGRDAITEMLIPKIKAFGSAGHAGDYKVVSLEE 317
Query: 160 A 160
A
Sbjct: 318 A 318
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ +R GT E G ++ ++ G+S
Sbjct: 301 VGPCGN------KVDHAVAAVGYGPNYIL-----IRNSWGTGWGENGYIRIKRGTGNS 347
>pdb|1WWC|A Chain A, Nt3 Binding Domain Of Human Trkc Receptor
Length = 118
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 9/82 (10%)
Query: 47 HPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTL-VDFYREGEPS 105
+P R +LE+ + + + + VRG P + +L + +SK + V++Y+EGE S
Sbjct: 7 YPPRVVSLEEPELRLEHCIEFVVRGNPPP---TLHWLHNGQPLRESKIIHVEYYQEGEIS 63
Query: 106 QPALTGVIVFTSTPDKVSNKYY 127
+ G ++F + P +N Y
Sbjct: 64 E----GCLLF-NKPTHYNNGNY 80
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ ++ GT E G ++ ++ G+S
Sbjct: 150 VGPCGN------KVDHAVAAVGYGPNYIL-----IKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ ++ GT E G ++ ++ G+S
Sbjct: 150 VGPCGN------KVDHAVAAVGYGPNYIL-----IKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ ++ GT E G ++ ++ G+S
Sbjct: 150 VGPCGN------KVDHAVAAVGYGPNYIL-----IKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ ++ GT E G ++ ++ G+S
Sbjct: 150 VGPCGN------KVDHAVAAVGYGPNYIL-----IKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ ++ GT E G ++ ++ G+S
Sbjct: 150 VGPCGN------KVDHAVAAVGYGPNYIL-----IKNSWGTGWGENGYIRIKRGTGNS 196
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 28.1 bits (61), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 13/58 (22%)
Query: 144 VGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGT--AEKGILKERKLVGSS 199
VGPCGN K++ A+ +G+ +YI+ ++ GT E G ++ ++ G+S
Sbjct: 150 VGPCGN------KVDHAVAAVGYGPNYIL-----IKNSWGTGWGENGYIRIKRGTGNS 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,228,921
Number of Sequences: 62578
Number of extensions: 301719
Number of successful extensions: 531
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 530
Number of HSP's gapped (non-prelim): 15
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)