Query 027275
Match_columns 225
No_of_seqs 153 out of 689
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 07:31:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027275.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027275hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04752 ChaC: ChaC-like prote 100.0 3.8E-67 8.3E-72 443.5 20.5 173 3-180 1-177 (178)
2 KOG3182 Predicted cation trans 100.0 1.8E-66 3.9E-71 440.2 18.2 198 1-208 8-207 (212)
3 COG3703 ChaC Uncharacterized p 100.0 2.7E-59 5.8E-64 395.1 20.0 175 2-184 11-185 (190)
4 PHA03014 hypothetical protein; 99.7 1.3E-15 2.8E-20 127.6 14.8 144 1-180 1-160 (163)
5 cd06661 GGCT_like GGCT-like do 99.7 2.1E-16 4.6E-21 118.3 8.5 92 5-117 1-99 (99)
6 PF13772 AIG2_2: AIG2-like fam 98.9 3.7E-09 8.1E-14 78.7 7.3 80 61-174 1-83 (83)
7 PF06094 AIG2: AIG2-like famil 98.9 1.9E-08 4.1E-13 76.1 9.6 98 5-118 1-102 (102)
8 KOG4059 Uncharacterized conser 98.8 3.6E-09 7.9E-14 88.3 5.1 151 3-175 24-185 (193)
9 COG2105 Uncharacterized conser 97.4 0.0011 2.3E-08 53.4 8.6 91 5-119 4-101 (120)
10 PF06570 DUF1129: Protein of u 90.5 0.23 5.1E-06 42.7 3.0 53 147-201 3-56 (206)
11 PRK07668 hypothetical protein; 85.3 0.87 1.9E-05 41.1 3.3 56 147-202 3-58 (254)
12 KOG4450 Uncharacterized conser 83.6 1.8 3.9E-05 36.5 4.3 84 4-100 8-102 (168)
13 COG4858 Uncharacterized membra 80.1 2.4 5.1E-05 37.1 3.8 51 148-200 18-69 (226)
14 KOG4311 Histidinol dehydrogena 66.0 7.8 0.00017 35.7 3.8 76 44-128 145-230 (359)
15 COG4762 Uncharacterized protei 43.7 12 0.00026 31.6 1.1 10 2-11 99-108 (168)
16 TIGR00290 MJ0570_dom MJ0570-re 33.1 2.5E+02 0.0053 24.8 7.8 40 127-166 40-86 (223)
17 COG5452 Uncharacterized conser 27.7 75 0.0016 27.1 3.4 32 132-172 67-98 (180)
18 KOG0188 Alanyl-tRNA synthetase 21.1 42 0.00091 35.0 0.8 58 143-211 171-231 (895)
No 1
>PF04752 ChaC: ChaC-like protein; InterPro: IPR006840 The ChaC protein is thought to be associated with the putative ChaA Ca2+/H+ cation transport protein in Escherichia coli. Its function is not known. This family also includes homologues regions from several other bacterial and eukaryotic proteins.
Probab=100.00 E-value=3.8e-67 Score=443.50 Aligned_cols=173 Identities=47% Similarity=0.893 Sum_probs=162.8
Q ss_pred cEEEEccccccCCCCCCCceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHHHHHHH
Q 027275 3 FWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEY 82 (225)
Q Consensus 3 ~WVFgYGSLiW~p~f~~~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l~~ 82 (225)
+||||||||||||+|+|.++++|+|+||||+|||+|++||||||+||||+||++.++++||||||+|++ ++++++|++
T Consensus 1 ~WVFGYGSLiW~p~f~~~e~~~a~i~Gy~R~F~~~s~~hRGTpe~PGrvltL~~~~~~~c~Gvayrv~~--~~~~~~l~~ 78 (178)
T PF04752_consen 1 LWVFGYGSLIWNPGFPYAERRPAYIKGYHRRFCQGSTDHRGTPEQPGRVLTLDPGEEGSCWGVAYRVPE--EDAEEVLEY 78 (178)
T ss_pred CEEEEeccceeCCCCCccceEEEEecCcccceEeeccccCCCcCCCcceeeeeeCCCCEEEEEEEEecC--cCHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999999778999999999995 677899999
Q ss_pred HHHHhh-cCCCcceEEEEec-CCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 027275 83 LERREC-EYDSKTLVDFYRE-GEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160 (225)
Q Consensus 83 Ld~RE~-~~y~~~~v~v~~~-~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~eYL~~l~~~ 160 (225)
||.||| ++|.+.+++++.. +....+.+++|++||+++ +||+|+|+++++++|++|++|+|+||+|.|||++|+++
T Consensus 79 L~~RE~~~Gy~~~~v~~~~~~~~~~~~~~~~al~yv~~~---~n~~y~g~~~~~~~A~~Ia~a~G~~G~N~eYL~~l~~~ 155 (178)
T PF04752_consen 79 LDEREMIGGYTRHWVPFYPEVDTDSGPVIVEALVYVADP---DNPQYLGPLPLEEIARIIATASGPSGSNREYLFNLAEA 155 (178)
T ss_pred HhhcccccccceEEEEEEEeccCCCCceEEEEEEEEecC---CCccccCCCCHHHHHHHHhheECcCcCCHHHHHHHHHH
Confidence 999999 7899999999873 333444456899999999 99999999999999999999999999999999999999
Q ss_pred HHhCC--CCChhHHHHHHHHHh
Q 027275 161 MFDIG--HEDDYIIELANEVRK 180 (225)
Q Consensus 161 Lr~lg--i~D~~L~~L~~~v~~ 180 (225)
|+++| |.|+||++|+++|++
T Consensus 156 L~~~gp~i~D~~l~~L~~~V~~ 177 (178)
T PF04752_consen 156 LRELGPGIRDPHLFALERRVRE 177 (178)
T ss_pred HHHhCCCCCChHHHHHHHHHhh
Confidence 99999 999999999999986
No 2
>KOG3182 consensus Predicted cation transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-66 Score=440.19 Aligned_cols=198 Identities=51% Similarity=0.874 Sum_probs=181.2
Q ss_pred CccEEEEccccccCCCCCCCceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHHHHH
Q 027275 1 MVFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAM 80 (225)
Q Consensus 1 m~~WVFgYGSLiW~p~f~~~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l 80 (225)
|++||||||||||||+|+|+++.+|+|+||+|||||+|+||||||+.||||+||+++.++.||||||+|++ +.+.+++
T Consensus 8 ~~lWVFGYGSLiW~Pgf~y~~~~~gfI~Gy~RrF~q~s~dHRGtp~~PGRv~TLi~~~e~~~wGvay~V~g--~~~~~~l 85 (212)
T KOG3182|consen 8 MALWVFGYGSLIWKPGFHYDESIPGFIKGYKRRFWQGSTDHRGTPEHPGRVATLIPYEEAITWGVAYRVRG--KQASEVL 85 (212)
T ss_pred ceEEEEeecceeecCCCCccccchhhheehhhheeccccccCCCCCCCceeEEeecCCcceEeeEEEEecc--hhHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999996 6888999
Q ss_pred HHHHHHhhcCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHH
Q 027275 81 EYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKA 160 (225)
Q Consensus 81 ~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~eYL~~l~~~ 160 (225)
++|+.||.+||..+.|+|++.+..+.+.+..+||||+|+ +|+.|+|+.|+++||++|++|.||||+|.||||||+++
T Consensus 86 ~yl~~RE~nGY~~~~v~f~~e~~~~~p~v~~vlvyvaTp---~N~~ylGp~ple~iArqI~t~~GpsG~N~eYLf~La~a 162 (212)
T KOG3182|consen 86 EYLNVRELNGYTTHEVEFYPEDAAELPEVLGVLVYVATP---DNEYYLGPAPLEEIARQIVTARGPSGPNREYLFNLAKA 162 (212)
T ss_pred HHHHHHhhcCcceeeeeeeccCCCCCCceEEEEEEEecC---CCccccCCccHHHHHHHHHhccCCCCCcHHHHHHHHHH
Confidence 999999999999999999998877778888999999999 89999999999999999999999999999999999999
Q ss_pred HHhC--CCCChhHHHHHHHHHhHhccccccccccccccCCCCCCCCCCCC
Q 027275 161 MFDI--GHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRMPLTKSH 208 (225)
Q Consensus 161 Lr~l--gi~D~~L~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (225)
|+++ |..|+||++|++.|++.+.... ..+..| -.|+.|+..+|
T Consensus 163 m~~l~p~~~D~hl~eL~~~Vrk~l~~~~---~~~~al--~~~~~i~~~~~ 207 (212)
T KOG3182|consen 163 MRQLFPGAEDEHLFELENEVRKYLVESR---PLVHAL--LEPSGIRVEEK 207 (212)
T ss_pred HHHcCCCchhHHHHHHHHHHHHHHhccc---hhhhhh--cccchhhhhhh
Confidence 9999 7899999999999999776432 112333 45566666554
No 3
>COG3703 ChaC Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-59 Score=395.15 Aligned_cols=175 Identities=34% Similarity=0.554 Sum_probs=160.4
Q ss_pred ccEEEEccccccCCCCCCCceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHHHHHH
Q 027275 2 VFWVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAME 81 (225)
Q Consensus 2 ~~WVFgYGSLiW~p~f~~~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l~ 81 (225)
.+||||||||||||+|+|.++.+|+++||||+||+.|++||||+++||+|++|+ +||+|+|||||||+ +..+++++
T Consensus 11 ~~WVFgYGSLmW~P~f~~~e~~~a~~~G~~Rsfc~~s~~~RGT~~~PGlvl~L~--~GGsc~GvafRip~--~~~~~v~~ 86 (190)
T COG3703 11 ELWVFGYGSLMWNPGFEFTEVRRATLHGYHRSFCLRSTDHRGTAEQPGLVLGLD--RGGSCEGVAYRIPE--AHAEEVLE 86 (190)
T ss_pred CeEEEEecceeecCCccccceeEEEEecceeEEEEEEeeecCCcCCCceEEEee--CCCcEEEEEEEcCc--hhhHHHHH
Confidence 389999999999999999999999999999999999999999999999999997 49999999999995 78889999
Q ss_pred HHHHHhhcCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Q 027275 82 YLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLFKLEKAM 161 (225)
Q Consensus 82 ~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~eYL~~l~~~L 161 (225)
||++||++ ++..+++.+.+-....+...+|++||+++ +|++|+|+++.+++|.+|+.|+|+||+|.|||++|.++|
T Consensus 87 yL~~RE~~-~t~~y~p~~l~v~~~~g~~~~al~~v~~~---~h~qyag~l~~~~~A~~ia~a~G~sG~n~eYL~~t~~hL 162 (190)
T COG3703 87 YLREREMN-YTLVYVPRWLPVELEGGRRVNALVFVGDR---KHPQYAGDLDAEQIAAIIAAAVGLSGPNAEYLFNTLQHL 162 (190)
T ss_pred HHHHhhcc-ccceeeeEEEEEecCCCcEEEEEEEEecC---CccccCCCCcHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 99999997 66666655554444444567899999999 999999999999999999999999999999999999999
Q ss_pred HhCCCCChhHHHHHHHHHhHhcc
Q 027275 162 FDIGHEDDYIIELANEVRKELGT 184 (225)
Q Consensus 162 r~lgi~D~~L~~L~~~v~~~~~~ 184 (225)
+++||+|+.|+.|...|.+...+
T Consensus 163 ~~~gi~d~~l~~l~~~v~~~~~~ 185 (190)
T COG3703 163 RKLGIRDHNLEDLLELVAALLAE 185 (190)
T ss_pred HhcCCcchhHHHHHHHHHHHHHH
Confidence 99999999999999999987664
No 4
>PHA03014 hypothetical protein; Provisional
Probab=99.68 E-value=1.3e-15 Score=127.65 Aligned_cols=144 Identities=14% Similarity=0.163 Sum_probs=110.9
Q ss_pred CccEEEEccccccCCCC--------CCCceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCC
Q 027275 1 MVFWVFGYGSLVWNPGF--------EYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGG 72 (225)
Q Consensus 1 m~~WVFgYGSLiW~p~f--------~~~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~ 72 (225)
|-.|+|||||.|+...+ .......|.|.||.=+|..+ - ...|-++|+++++|+.|||++|+|+.
T Consensus 1 ~~~~YfAYGSNl~~~qm~~Rcp~~~~a~~vg~a~L~~~~~~L~f~-~------~~~Ga~ATIvp~~g~~V~Gvlw~i~~- 72 (163)
T PHA03014 1 MYKYYFGYGANQNINYLIHMHKLKIDFLNIKIGIILGHSFKLCYS-K------EIDSVIASIKKDDNGIVFGILYEFNE- 72 (163)
T ss_pred CceEEEEEccCcCHHHHHHhCCCCCCCceEEEEEeeccceEEecc-C------CcCCceEEEEECCCCEEEEEEEEeCH-
Confidence 67899999999976544 23345679999776666632 1 23577999999999999999999995
Q ss_pred CccHHHHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEE--EEecCCCCCCCCCCCCCHHHHHHHHHhccCCC
Q 027275 73 PEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVF--TSTPDKVSNKYYLGPAPLEEMARQIATAVGPC 147 (225)
Q Consensus 73 ~~~~~e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvY--va~~~~~~n~~y~g~~~~e~~A~~I~~a~G~s 147 (225)
..++.||+.|+. -|.+..++|.+.++.. ...|++| +.++ .++.+ -+.
T Consensus 73 -----~dl~~LD~~EGvp~~~Y~~~~v~V~~~~~~~---~~~a~~Y~~~~~~---~~~~~-----------------~~~ 124 (163)
T PHA03014 73 -----SIMKKFDKQEFIDKNIYKLAKMNVLDLEDEK---IIEAQAYKAILDD---DNNMF-----------------YDA 124 (163)
T ss_pred -----HHHHHHhhhcCCCcCceEEEEEEEEeCCCCc---EEEEEEEehhcCC---Ccccc-----------------cCC
Confidence 788999999983 5999999998765322 3579999 5554 33321 112
Q ss_pred CCcHHHHHHHHHHHHhCCC---CChhHHHHHHHHHh
Q 027275 148 GNNRDYLFKLEKAMFDIGH---EDDYIIELANEVRK 180 (225)
Q Consensus 148 G~N~eYL~~l~~~Lr~lgi---~D~~L~~L~~~v~~ 180 (225)
-|+..||.-+.++.++.|+ +.+|+..|.+..++
T Consensus 125 ~Ps~~Yl~~I~~Ga~e~Gl~~~P~~Y~~~l~~~~~~ 160 (163)
T PHA03014 125 PNFNIYKDIIIDALIENNILDYPLWYIKHINNIFKE 160 (163)
T ss_pred CChHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 3677999999999999999 99999999887654
No 5
>cd06661 GGCT_like GGCT-like domains, also called AIG2-like family. Gamma-glutamyl cyclotransferase (GGCT) catalyzes the formation of pyroglutamic acid (5-oxoproline) from dipeptides containing gamma-glutamyl, and is a dimeric protein. In Homo sapiens, the protein is encoded by the gene C7orf24, and the enzyme participates in the gamma-glutamyl cycle. Hereditary defects in the gamma-glutamyl cycle have been described for some of the genes involved, but not for C7orf24. The synthesis and metabolism of glutathione (L-gamma-glutamyl-L-cysteinylglycine) ties the gamma-glutamyl cycle to numerous cellular processes; glutathione acts as a ubiquitous reducing agent in reductive mechanisms involved in protein and DNA synthesis, transport processes, enzyme activity, and metabolism. AIG2 (avrRpt2-induced gene) is an Arabidopsis protein that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2. avrRpt2 is an avir
Probab=99.67 E-value=2.1e-16 Score=118.30 Aligned_cols=92 Identities=21% Similarity=0.143 Sum_probs=77.0
Q ss_pred EEEccccccCCCC-----CCCceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHHHH
Q 027275 5 VFGYGSLVWNPGF-----EYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLA 79 (225)
Q Consensus 5 VFgYGSLiW~p~f-----~~~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~ 79 (225)
||+||||||.+.+ ......+|+|+||++.|+..+ ...+|++++++.|+|++|+++. +.
T Consensus 1 ~F~YGsl~~~~~~~~~~~~~~~~~~a~l~g~~l~~~~~~-----------~~p~~~~~~~~~v~G~v~~i~~------~~ 63 (99)
T cd06661 1 LFVYGTLMDGEVLHARLGRALFLGPATLKGYRLVFGGGS-----------GYPGLVPGPGARVWGELYEVDP------ED 63 (99)
T ss_pred CEEeccCCChhHhHhhCCCCceEEEEEecCcEEEecCCC-----------ccCEEEeCCCCEEEEEEEEECH------HH
Confidence 6999999999988 456778999999999999876 2446666788899999999983 79
Q ss_pred HHHHHHHhhc--CCCcceEEEEecCCCCCCceeEEEEEEE
Q 027275 80 MEYLERRECE--YDSKTLVDFYREGEPSQPALTGVIVFTS 117 (225)
Q Consensus 80 l~~Ld~RE~~--~y~~~~v~v~~~~~~~~~~~~~alvYva 117 (225)
++.||.+|+. .|.+..+++...++. ...|++|+.
T Consensus 64 l~~LD~~E~~~~~Y~r~~v~v~~~~~~----~~~a~~Y~~ 99 (99)
T cd06661 64 LARLDAFEGVPGGYRREEVEVELEDGE----GVEAWVYVA 99 (99)
T ss_pred HHhhhhhcCCCCCeEEEEEEEEeCCCC----EEEEEEEeC
Confidence 9999999996 899999999876532 257899973
No 6
>PF13772 AIG2_2: AIG2-like family; PDB: 2QIK_A 2RBH_B 2I5T_B 2Q53_A 2PN7_B 3CRY_A.
Probab=98.92 E-value=3.7e-09 Score=78.74 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=62.1
Q ss_pred eEEEEEEEeeCCCccHHHHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHH
Q 027275 61 ICWGVAYCVRGGPEKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMA 137 (225)
Q Consensus 61 ~c~GvaYri~~~~~~~~e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A 137 (225)
.|||++|+|+. +.++.||.+|+. .|++..++|...++. ...|++|++++ . +. +
T Consensus 1 ~V~Gvly~l~~------~d~~~LD~~Eg~~~g~Y~~~~v~V~~~~g~----~~~a~tY~~~~---~-~~--~-------- 56 (83)
T PF13772_consen 1 RVWGVLYELSE------EDLESLDRYEGVPIGAYRRIEVTVSTADGK----PVEAFTYVANP---K-PE--G-------- 56 (83)
T ss_dssp EEEEEEEEEEG------GGHHHHHHHTTTTTTSEEEEEEEEEETTCE----EEEEEEEEESS---E-EE-----------
T ss_pred CEEEEEEEECH------HHHHHHHHhcCCCCCCEEEEEEEEEcCCCC----EEEEEEEEcCC---C-CC--C--------
Confidence 48999999996 688999999983 599999999874432 25799999987 3 21 1
Q ss_pred HHHHhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHH
Q 027275 138 RQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIEL 174 (225)
Q Consensus 138 ~~I~~a~G~sG~N~eYL~~l~~~Lr~lgi~D~~L~~L 174 (225)
-|+.+||..+.+..++.|++..|+..|
T Consensus 57 ----------~Ps~~Yl~~i~~GA~e~gLp~~Yv~~L 83 (83)
T PF13772_consen 57 ----------PPSDRYLDLILRGAREHGLPAEYVEKL 83 (83)
T ss_dssp -------------HHHHHHHHHHHHHCT--HHHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHHcCCCHHHHhhC
Confidence 188999999999999999999999876
No 7
>PF06094 AIG2: AIG2-like family; InterPro: IPR009288 AIG2 is an Arabidopsis protein that exhibit RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 []. Its structure consists of a five-stranded beta-barrel surrounded by two alpha-helices and a small beta-sheet. A long flexible alpha-helix protrudes from the structure at the C-terminal end. Conserved residues in a hydrophilic cavity, which are able to bind small ligands, may act as an active site in AIG2-like proteins [].; PDB: 1XHS_A 2KL2_A 1VKB_A 3JUD_A 3JUB_A 3JUC_A 2JQV_A 2QIK_A 2G0Q_A 1V30_A.
Probab=98.87 E-value=1.9e-08 Score=76.09 Aligned_cols=98 Identities=13% Similarity=-0.018 Sum_probs=64.4
Q ss_pred EEEccccccCCCCCCCce-eeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCC-eEEEEEEEeeCCCccHHHHHHH
Q 027275 5 VFGYGSLVWNPGFEYDEK-ILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQET-ICWGVAYCVRGGPEKERLAMEY 82 (225)
Q Consensus 5 VFgYGSLiW~p~f~~~e~-~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg-~c~GvaYri~~~~~~~~e~l~~ 82 (225)
||.|||||.....+..-. ..+.+.+........ .+.+ .|...+|++++++ .|+|.+|.|.. +.++.
T Consensus 1 lFvYGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~yP~l~~~~~~~~V~G~l~~v~~------~~l~~ 68 (102)
T PF06094_consen 1 LFVYGTLMDGEVNHSVLGRPGAKFIGEPATLGGR--YLYG----GGGYPALVPGEGSGRVEGELYEVDD------EELAR 68 (102)
T ss_dssp EEESSTTSTTSTTGHHGTSGSSEEEEEEEEEEEE--EEET----TSSCEEEESCTTSSEEEEEEEEE-H------HHHHH
T ss_pred CEEECCCCCCCcChhhhhccceEEEEeeEEEEeE--EEeC----CCCCCEEEEcCCCCEEEEEEEEECH------HHHHh
Confidence 799999999877653211 134455554444411 1111 2334555556666 99999999984 56999
Q ss_pred HHHHh--hcCCCcceEEEEecCCCCCCceeEEEEEEEe
Q 027275 83 LERRE--CEYDSKTLVDFYREGEPSQPALTGVIVFTST 118 (225)
Q Consensus 83 Ld~RE--~~~y~~~~v~v~~~~~~~~~~~~~alvYva~ 118 (225)
||..| ...|.+..++|...++.. ..|.+|+.+
T Consensus 69 LD~~E~~~~~Y~R~~v~v~~~~g~~----~~a~vYv~~ 102 (102)
T PF06094_consen 69 LDEYEGEGSLYRRVRVPVELGDGEE----VEAWVYVWN 102 (102)
T ss_dssp HHHHTTTTTSEEEEEEEEECCTSSE----EEEEEEEE-
T ss_pred hHhhcCCCCceEEEEEEEEeCCCCE----eEEEEEEEC
Confidence 99996 468999999998766432 479999863
No 8
>KOG4059 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.84 E-value=3.6e-09 Score=88.33 Aligned_cols=151 Identities=19% Similarity=0.226 Sum_probs=105.7
Q ss_pred cEEEEccccccCCCCCCC-----ceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHH
Q 027275 3 FWVFGYGSLVWNPGFEYD-----EKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKER 77 (225)
Q Consensus 3 ~WVFgYGSLiW~p~f~~~-----e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~ 77 (225)
+.+|||||.|---..++. --.+|.|..|+--|...|..+-| -++||.+.+|..|||++.+++-
T Consensus 24 FlYFafGSNlL~~RIh~rnpsA~~~c~a~L~dfrLdFan~S~~W~G------~vATI~~t~GdeVWG~vWKm~~------ 91 (193)
T KOG4059|consen 24 FLYFAFGSNLLIKRIHIRNPSAVRICPALLPDFRLDFANESAGWSG------SVATIVPTQGDEVWGTVWKMDL------ 91 (193)
T ss_pred hhhhhcccchhhhheeecCCCceeeccccCcceeeecccccccccc------ceeEEecCCCCeEEEEEEEccc------
Confidence 578999999976666553 23789999999999998877655 5999999999999999999995
Q ss_pred HHHHHHHHHhh---cCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHH
Q 027275 78 LAMEYLERREC---EYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYL 154 (225)
Q Consensus 78 e~l~~Ld~RE~---~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~eYL 154 (225)
..+.-||..|+ +.|.+..|.|.+..+.+ ..|-+|..+. -.-+...|-...-..|....-.++--.||+
T Consensus 92 snl~slDeQEgv~~G~Y~~~~V~V~t~eg~~----itcR~Yl~sn-----l~~~P~~PSp~Yk~~i~~GAkEn~lP~dY~ 162 (193)
T KOG4059|consen 92 SNLPSLDEQEGVSQGIYEPRTVYVKTHEGES----ITCRAYLLSN-----LYELPKQPSPTYKQCIVKGAKENSLPEDYV 162 (193)
T ss_pred ccCccchhhhcccccceEEEEEEEecCCCce----eehhHhhhhh-----hhhccCCCCchHHhhhhhcccccCCcHHHH
Confidence 57788999996 35888888887765433 3456677653 111122344445566666666777777777
Q ss_pred HHHHHHHHhC---CCCChhHHHHH
Q 027275 155 FKLEKAMFDI---GHEDDYIIELA 175 (225)
Q Consensus 155 ~~l~~~Lr~l---gi~D~~L~~L~ 175 (225)
.+| ++++.- |-.|.++..+.
T Consensus 163 qkL-~aIe~NgfaG~V~~~ie~~~ 185 (193)
T KOG4059|consen 163 QKL-RAIEHNGFAGQVNSYIERKL 185 (193)
T ss_pred HHH-hccccCCcccchhhHHHHHH
Confidence 654 233333 34555555544
No 9
>COG2105 Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0011 Score=53.40 Aligned_cols=91 Identities=21% Similarity=0.172 Sum_probs=60.9
Q ss_pred EEEccccccCCCCCC------CceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHHH
Q 027275 5 VFGYGSLVWNPGFEY------DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKERL 78 (225)
Q Consensus 5 VFgYGSLiW~p~f~~------~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e 78 (225)
||-||||.=...=+. ..-..+.++||+- |... +..||.+- + .+.|+|=+|+++. +
T Consensus 4 vfVYGTLr~Ge~N~~~~~~~~~~~~~~~~~gy~l-y~lg-------~~YP~~~~----g-~~~V~Gevy~~d~------~ 64 (120)
T COG2105 4 VFVYGTLRPGEGNHHRYLKGARFLGEASTKGYQL-YDLG-------PGYPGLVP----G-EGKVHGEVYRIDE------E 64 (120)
T ss_pred EEEEeccCCCCcchHHHHhcCcccCcceeeeeee-eccC-------CCCcEEcC----C-CCEEEEEEEEECH------H
Confidence 999999973332221 1124466777432 2222 33665544 3 3599999999994 8
Q ss_pred HHHHHHHHhhcC-CCcceEEEEecCCCCCCceeEEEEEEEec
Q 027275 79 AMEYLERRECEY-DSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (225)
Q Consensus 79 ~l~~Ld~RE~~~-y~~~~v~v~~~~~~~~~~~~~alvYva~~ 119 (225)
.++.||.-|..+ |.+.++.+.++.++. .|++|+.+.
T Consensus 65 ~l~~LDelE~~~~y~r~~v~v~~~~G~~-----~aw~Y~y~~ 101 (120)
T COG2105 65 TLEALDELEDYGGYYRREVEVTTPLGSK-----EAWLYVYAE 101 (120)
T ss_pred HHhhhhhhhccCceEEEEEEEEcCCCCE-----EEEEEEEcC
Confidence 999999999863 677788776665532 589999987
No 10
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=90.51 E-value=0.23 Score=42.66 Aligned_cols=53 Identities=30% Similarity=0.498 Sum_probs=41.3
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHH-HHhHhccccccccccccccCCCCC
Q 027275 147 CGNNRDYLFKLEKAMFDIGHEDDYIIELANE-VRKELGTAEKGILKERKLVGSSSR 201 (225)
Q Consensus 147 sG~N~eYL~~l~~~Lr~lgi~D~~L~~L~~~-v~~~~~~~~~~~~~~~~~~~~~~~ 201 (225)
+-.|.||++++-..|++-+++|...+++... +.+++..|.+|.. ++.+|| +|-
T Consensus 3 TkkN~~y~~~l~~~L~~~~~~e~~~e~~L~eil~~LleaQk~G~t-A~~lfG-~P~ 56 (206)
T PF06570_consen 3 TKKNQEYIFDLRKYLRSSGVSEEEIEELLEEILPHLLEAQKKGKT-ARQLFG-DPK 56 (206)
T ss_pred chHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCCCc-HHHHcC-CHH
Confidence 4579999999999999999999999988554 4555555554544 789999 763
No 11
>PRK07668 hypothetical protein; Validated
Probab=85.28 E-value=0.87 Score=41.05 Aligned_cols=56 Identities=16% Similarity=0.197 Sum_probs=42.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHhHhccccccccccccccCCCCCC
Q 027275 147 CGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRM 202 (225)
Q Consensus 147 sG~N~eYL~~l~~~Lr~lgi~D~~L~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 202 (225)
+-.|.||+.++...|+.-|++|...+++...+....-..++.--++..++|++|..
T Consensus 3 TkeNeefl~~L~~yL~~~glseeeieeiL~Ei~~hLlEgQk~GkTA~~IfG~sPk~ 58 (254)
T PRK07668 3 SKEGRKFLDDTRVYLIAKGIKEEDIESFLEDAELHLIEGEKDGKTVEDIFGDSPKE 58 (254)
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHcCCcHHHHhCCCHHH
Confidence 34699999999999999999999999987666654433333334488999998764
No 12
>KOG4450 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.64 E-value=1.8 Score=36.47 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=57.1
Q ss_pred EEEEccccccCCCCCCCceeeeEEeceEEEEEeecccCCCCCCCCceeee-------eeeCC--CCeEEEEEEEeeCCCc
Q 027275 4 WVFGYGSLVWNPGFEYDEKILGFIKDYRRVFDLACIDHRGTPQHPARTCT-------LEKSQ--ETICWGVAYCVRGGPE 74 (225)
Q Consensus 4 WVFgYGSLiW~p~f~~~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVlt-------L~~~~--gg~c~GvaYri~~~~~ 74 (225)
-||-||.|=-...=++.-.. .+.|..+-++++.+. -..| +|.+ |...+ |-.+.|=.|.|++
T Consensus 8 lvFVYGTLKrg~pNh~~L~d--~~~g~A~F~gr~~T~----~kyP-LVigt~ynIPfLLnkpGsG~~V~GElY~Vd~--- 77 (168)
T KOG4450|consen 8 LVFVYGTLKRGQPNHFLLED--LINGDAVFIGRGTTL----LKYP-LVIGTRYNIPFLLNKPGSGYHVEGELYEVDE--- 77 (168)
T ss_pred EEEEEeeecCCCCCchhhhh--ccCCceEEEEeceec----cccc-eEeecccCCceEEcCCCCcceeeeEEEEeCH---
Confidence 69999999766554443222 237887777766543 3344 5555 33333 4579999999994
Q ss_pred cHHHHHHHHHHHhh--cCCCcceEEEEe
Q 027275 75 KERLAMEYLERREC--EYDSKTLVDFYR 100 (225)
Q Consensus 75 ~~~e~l~~Ld~RE~--~~y~~~~v~v~~ 100 (225)
.-|..||.-|. ++|.|..+.+..
T Consensus 78 ---rmL~~LD~lE~~~~~Y~R~~i~v~~ 102 (168)
T KOG4450|consen 78 ---RMLSRLDELEGCPNHYEREPIRVIE 102 (168)
T ss_pred ---HHHhhhHhhcccHHHhhhhhhHHHH
Confidence 78999999997 478887766653
No 13
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=80.08 E-value=2.4 Score=37.10 Aligned_cols=51 Identities=27% Similarity=0.498 Sum_probs=41.6
Q ss_pred CCcHHHHHHHHHHHHhCCCCChhHHHH-HHHHHhHhccccccccccccccCCCC
Q 027275 148 GNNRDYLFKLEKAMFDIGHEDDYIIEL-ANEVRKELGTAEKGILKERKLVGSSS 200 (225)
Q Consensus 148 G~N~eYL~~l~~~Lr~lgi~D~~L~~L-~~~v~~~~~~~~~~~~~~~~~~~~~~ 200 (225)
-.|.||+...-++|..-|-.|..+..+ ++.+-+++..+.+++- ++||+| +|
T Consensus 18 kkNqeyvh~vtkqli~~gksdeeik~Il~e~ipqIleeQkkGit-ARkL~g-tP 69 (226)
T COG4858 18 KKNQEYVHEVTKQLIGDGKSDEEIKIILEEMIPQILEEQKKGIT-ARKLLG-TP 69 (226)
T ss_pred HHhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhccch-HHHHcC-Cc
Confidence 379999999999999999999999887 5555666666666665 899999 44
No 14
>KOG4311 consensus Histidinol dehydrogenase [Amino acid transport and metabolism]
Probab=65.97 E-value=7.8 Score=35.74 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=56.1
Q ss_pred CCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHHHHHHHHHHHhhcCCCcceEEEEecCCCCCCce----------eEEE
Q 027275 44 TPQHPARTCTLEKSQETICWGVAYCVRGGPEKERLAMEYLERRECEYDSKTLVDFYREGEPSQPAL----------TGVI 113 (225)
Q Consensus 44 Tpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~e~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~----------~~al 113 (225)
|-..-|++.||+-.+-|.|-|..|--.+ ..-..++-+-+.||.|..-++|..+..+.... ..+|
T Consensus 145 tDr~dgl~~tlvv~~~g~~Lglvysske------s~a~ti~~g~gvy~SRsR~~lW~KGetSgn~q~ll~i~vDCD~D~l 218 (359)
T KOG4311|consen 145 TDRKDGLVATLVVVDTGAVLGLVYSSKE------SLATTISSGKGVYFSRSRSTLWTKGETSGNFQNLLDIYVDCDRDSL 218 (359)
T ss_pred cCCCCCeEEEEEehhhhhhhhhhcccHH------HHHHHHhcCcceEEecccceeeeccccCcCceeeEEEeeccCccce
Confidence 3345678888988888999999997663 45567888888898887777777665543321 3589
Q ss_pred EEEEecCCCCCCCCC
Q 027275 114 VFTSTPDKVSNKYYL 128 (225)
Q Consensus 114 vYva~~~~~~n~~y~ 128 (225)
.|++++ ++|-|+
T Consensus 219 ~f~v~q---~g~gfC 230 (359)
T KOG4311|consen 219 IFLVTQ---DGPGFC 230 (359)
T ss_pred EEEEec---CCCccc
Confidence 999999 788665
No 15
>COG4762 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.72 E-value=12 Score=31.62 Aligned_cols=10 Identities=50% Similarity=0.860 Sum_probs=8.9
Q ss_pred ccEEEEcccc
Q 027275 2 VFWVFGYGSL 11 (225)
Q Consensus 2 ~~WVFgYGSL 11 (225)
..|.||||+|
T Consensus 99 ~~~gf~yGTL 108 (168)
T COG4762 99 DVRGFGYGTL 108 (168)
T ss_pred ceeEEeeccc
Confidence 4799999998
No 16
>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain. Proteins with this uncharacterized domain include two apparent ortholog families in the Archaea, one of which is universal among the first four completed archaeal genomes, and YLR143W, a much longer protein from Saccharomyces cerevisiae. The domain comprises the full length of the archaeal proteins and the first third of the yeast protein.
Probab=33.07 E-value=2.5e+02 Score=24.76 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=30.0
Q ss_pred CCCCCCHHHHHHHHHhccC-------CCCCcHHHHHHHHHHHHhCCC
Q 027275 127 YLGPAPLEEMARQIATAVG-------PCGNNRDYLFKLEKAMFDIGH 166 (225)
Q Consensus 127 y~g~~~~e~~A~~I~~a~G-------~sG~N~eYL~~l~~~Lr~lgi 166 (225)
|.-..+.-++.+..|.|-| ..|++.+|+..+.+.|+++|+
T Consensus 40 ~~~H~~~~~~~~~qA~algipl~~~~~~~~~e~~~e~l~~~l~~~gv 86 (223)
T TIGR00290 40 YMFHGVNAHLTDLQAESIGIPLIKLYTEGTEEDEVEELKGILHTLDV 86 (223)
T ss_pred ccccccCHHHHHHHHHHcCCCeEEeecCCCccHHHHHHHHHHHHcCC
Confidence 3333344466777888888 347788999999999999974
No 17
>COG5452 Uncharacterized conserved protein [Function unknown]
Probab=27.71 E-value=75 Score=27.08 Aligned_cols=32 Identities=16% Similarity=0.390 Sum_probs=25.6
Q ss_pred CHHHHHHHHHhccCCCCCcHHHHHHHHHHHHhCCCCChhHH
Q 027275 132 PLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYII 172 (225)
Q Consensus 132 ~~e~~A~~I~~a~G~sG~N~eYL~~l~~~Lr~lgi~D~~L~ 172 (225)
..+++|+.|. .+|...+.++||++||.|..+-
T Consensus 67 a~qeiaQei~---------Daff~dvDhs~RElGigD~gVp 98 (180)
T COG5452 67 AAQEIAQEIV---------DAFFKDVDHSLRELGIGDQGVP 98 (180)
T ss_pred HHHHHHHHHH---------HHHHhhhhHHHHHhCCCcccch
Confidence 3566777776 5799999999999999998653
No 18
>KOG0188 consensus Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.15 E-value=42 Score=35.02 Aligned_cols=58 Identities=28% Similarity=0.434 Sum_probs=41.2
Q ss_pred ccCCCCCcHHHHHHHHHH---HHhCCCCChhHHHHHHHHHhHhccccccccccccccCCCCCCCCCCCCCCc
Q 027275 143 AVGPCGNNRDYLFKLEKA---MFDIGHEDDYIIELANEVRKELGTAEKGILKERKLVGSSSRMPLTKSHIPT 211 (225)
Q Consensus 143 a~G~sG~N~eYL~~l~~~---Lr~lgi~D~~L~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (225)
.+||+||+.|-=+...-. -+-..+.|+.|-+|.+.|--.-.++..++ =.|+.+.||-|
T Consensus 171 dtGPCGPCtEIHyDriG~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGs-----------L~pLp~khIDT 231 (895)
T KOG0188|consen 171 DTGPCGPCTEIHYDRIGGRDAVKLVNHDDPDVLEIWNIVFIQYNREADGS-----------LKPLPKKHIDT 231 (895)
T ss_pred CCCCCCcchhhhhhhhcCcchHHHhcCCCcCceeeeeeeeeeeccccCCc-----------cccCccccccc
Confidence 578999999977665422 22235789999999998876666655333 25788888876
Done!