Query 027275
Match_columns 225
No_of_seqs 153 out of 689
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 12:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cry_A Gamma-glutamyl cyclotra 99.9 2.8E-28 9.6E-33 204.7 7.8 159 1-179 15-181 (188)
2 2qik_A UPF0131 protein YKQA; N 99.9 3.6E-27 1.2E-31 209.8 9.5 139 2-166 127-276 (285)
3 2jqv_A AT3G28950, AIG2 protein 99.8 1.6E-18 5.6E-23 142.6 9.4 133 1-164 7-145 (165)
4 2g0q_A AT5G39720.1 protein; st 99.7 5E-16 1.7E-20 129.3 11.3 135 2-167 17-157 (173)
5 1xhs_A Hypothetical UPF0131 pr 98.6 1.2E-07 4E-12 74.4 8.3 88 3-119 1-95 (121)
6 1v30_A Hypothetical UPF0131 pr 98.6 7.5E-08 2.6E-12 75.9 7.0 89 1-119 6-100 (124)
7 3jud_A AIG2-like domain-contai 98.5 2E-07 7E-12 76.0 7.6 107 3-128 2-129 (153)
8 1vkb_A Hypothetical protein; g 98.2 2.2E-06 7.6E-11 70.3 6.6 99 2-119 13-131 (161)
9 2qik_A UPF0131 protein YKQA; N 97.9 4.8E-05 1.6E-09 67.1 9.6 93 1-119 1-101 (285)
10 3cry_A Gamma-glutamyl cyclotra 74.4 2.2 7.6E-05 34.6 3.3 30 147-176 133-162 (188)
11 4fp9_B Mterf domain-containing 33.4 61 0.0021 28.8 5.5 51 131-181 90-140 (335)
12 3fg9_A Protein of universal st 20.4 1.1E+02 0.0036 22.4 4.0 62 150-213 77-154 (156)
No 1
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=99.95 E-value=2.8e-28 Score=204.73 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=120.9
Q ss_pred CccEEEEccccccCCCCCC-----CceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCcc
Q 027275 1 MVFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEK 75 (225)
Q Consensus 1 m~~WVFgYGSLiW~p~f~~-----~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~ 75 (225)
+.+|||+||||||++.|.. ....+|+|+||+|.|++.|.+| ++..+|.+++|++++++.|||++|+|+.
T Consensus 15 ~~~~~FaYGSlm~~~~~~~~~~~~~~~~~a~l~gy~l~f~~~~~~~--~~~~~g~~~~lv~~~g~~V~G~ly~v~~---- 88 (188)
T 3cry_A 15 ESFLYFAYGSNLLTERIHLRNPSAAFFCVARLQDFKLDFGNSQGKT--SQTWHGGIATIFQSPGDEVWGVVWKMNK---- 88 (188)
T ss_dssp CEEEEEECSGGGSHHHHHHHCTTCEEEEEEEEEEEEEEEEEETTCC--CTTTSSCEEEEEEEEEEEEEEEEEEEEG----
T ss_pred CCEEEEEEccCCCHHHHHhhCCCCceEEEEEEcCEEEEECCCCCCC--cCCCCCeeEeEEeCCCCEEEEEEEEECH----
Confidence 3689999999999998754 2467999999999999998877 6777899999999889999999999995
Q ss_pred HHHHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHH
Q 027275 76 ERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRD 152 (225)
Q Consensus 76 ~~e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~e 152 (225)
+.++.||.||+. .|.+..++|...++. ...|++|++++ .++ ..|.++.+.+|+++.+.+|.+.|
T Consensus 89 --~~l~~LD~~Eg~~~g~Y~r~~v~V~~~~g~----~~~a~vYv~~~---~~~----~~ps~~Yl~~i~~g~~~~gl~~~ 155 (188)
T 3cry_A 89 --SNLNSLDEQQGVKSGMYVVIEVKVATQEGK----EITCRSYLMTN---YES----APPSPQYKKIICMGAKENGLPLE 155 (188)
T ss_dssp --GGHHHHHHHTTGGGTSCEEEEEEEEETTCC----EEEEEEEECSS---EEE----CCCCHHHHHHHHHHHHHTTCCHH
T ss_pred --HHHHHHHHHhCCCCCcEEEEEEEEEeCCCC----EEEEEEEEecC---CCC----CCChHHHHHHHHHHHHHhCcCHH
Confidence 568999999983 799999999876542 25799999987 432 34556677777777777777777
Q ss_pred HHHHHHHHHHhCCCCChhHHHHHHHHH
Q 027275 153 YLFKLEKAMFDIGHEDDYIIELANEVR 179 (225)
Q Consensus 153 YL~~l~~~Lr~lgi~D~~L~~L~~~v~ 179 (225)
|+.+|.. +...|..-+.+.+|++.++
T Consensus 156 y~~~L~~-~~~~g~~~p~~~~~~~~~~ 181 (188)
T 3cry_A 156 YQEKLKA-IEPNDYTGKVSEEIEDIIK 181 (188)
T ss_dssp HHHHHHT-CCCCCCCSCCCHHHHHHHH
T ss_pred HHHHHhc-ccccCCCCCCcHHHHHHHH
Confidence 7666543 2223444445555554443
No 2
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=99.94 E-value=3.6e-27 Score=209.78 Aligned_cols=139 Identities=19% Similarity=0.234 Sum_probs=116.8
Q ss_pred ccEEEEccccccCCCCCCC-------c-eeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCC
Q 027275 2 VFWVFGYGSLVWNPGFEYD-------E-KILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGP 73 (225)
Q Consensus 2 ~~WVFgYGSLiW~p~f~~~-------e-~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~ 73 (225)
.+||||||||||++.|... + ..+|+|+||+|+|| .+.+++ .++||+++ ++.|||++|+|+.
T Consensus 127 ~~~yFaYGSnm~~~~~~~~~~p~~~~~~~~~a~L~G~~l~F~-~~~~~~-------g~a~iv~~-g~~v~Gvly~i~~-- 195 (285)
T 2qik_A 127 PIYYFAYGSCMDNARFQKAGVDHYFQDPVGRAVLKGYTTRFT-LKREDG-------SRADMLED-GGTTEGVLYRIPY-- 195 (285)
T ss_dssp SEEEEECSGGGSSHHHHHHTCGGGSSCEEEEEEEETCEEEEE-EEETTE-------EEEEEECS-SCEEEEEEEEECG--
T ss_pred cEEEEEechhcCHhhcccccCCcccceEeEEEEEeCeEEEcC-cCCCCC-------eeeeEEEC-CCEEEEEEEEECH--
Confidence 5899999999999998762 2 25899999999999 666654 46799998 9999999999995
Q ss_pred ccHHHHHHHHHHHhhc---CCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCc
Q 027275 74 EKERLAMEYLERRECE---YDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNN 150 (225)
Q Consensus 74 ~~~~e~l~~Ld~RE~~---~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N 150 (225)
+.++.||.||+. .|.+..++|...++. ...|+|||+++ .++ +..|.++++.+|+++.+ +|.+
T Consensus 196 ----~~l~~LD~~Eg~~~g~Y~r~~v~v~~~~g~----~~~a~~Yv~~~---~~~---~~~Ps~~Yl~~i~~g~~-~g~~ 260 (285)
T 2qik_A 196 ----SALSYLYKREGVESLTYRPAFVDVEAGGRH----YKDCLTFLVLQ---KEA---EIAPPQHYQIEIERGAE-LYLS 260 (285)
T ss_dssp ----GGHHHHHHHTTTTTTSEEEEEEEEEETTEE----EEEEEEEEESS---CCC---CCCCCHHHHHHHHHHHH-HHSC
T ss_pred ----HHHHHHHHhhCCCCCceEEEEEEEEECCCC----EEEEEEEEecC---CCC---CCCCHHHHHHHHHHHHh-cCCC
Confidence 578999999973 599999999876531 25799999988 543 56788999999999999 9999
Q ss_pred HHHHHHHHHHHHhCCC
Q 027275 151 RDYLFKLEKAMFDIGH 166 (225)
Q Consensus 151 ~eYL~~l~~~Lr~lgi 166 (225)
.|||.+|.++++.++-
T Consensus 261 ~~Y~~~l~~~~~~~~~ 276 (285)
T 2qik_A 261 PEFTEKLKRHMNSLPK 276 (285)
T ss_dssp HHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhhh
Confidence 9999999999998864
No 3
>2jqv_A AT3G28950, AIG2 protein-like; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana}
Probab=99.76 E-value=1.6e-18 Score=142.59 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=95.4
Q ss_pred CccEEEEccccccCCCCCC-----CceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEE-eeCCCc
Q 027275 1 MVFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYC-VRGGPE 74 (225)
Q Consensus 1 m~~WVFgYGSLiW~p~f~~-----~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYr-i~~~~~ 74 (225)
|.+|||+||||||.+.+++ ....+|+|+||+|.|++. ...|++|. ++++.|+|++|+ ++
T Consensus 7 ~~~~vFvYGSL~~~~~~~~~~~~~~~~~~a~l~Gy~~~~~~~-------~~yP~lv~----~~~~~V~G~v~~~v~---- 71 (165)
T 2jqv_A 7 QSHNVFVYGSILEPAVAAVILDRTADTVPAVLHGYHRYKLKG-------LPYPCIVS----SDSGKVNGKVITGVS---- 71 (165)
T ss_dssp SCEEEEESSTTSSHHHHHHHTSSCCEEEEEEEETCEECCCTT-------SSSCCEES----CCSSEEEEEEEEEEC----
T ss_pred CceEEEEEcCCCCchhhHHHhCCCCccceEEEeCeEEEecCC-------CCCCEEEE----CCCCEEEEEEEEeCC----
Confidence 5689999999999998864 567899999999999743 25676654 568899999997 66
Q ss_pred cHHHHHHHHHHHhhcCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHH
Q 027275 75 KERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYL 154 (225)
Q Consensus 75 ~~~e~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~eYL 154 (225)
++.|+.||.||++.|.+..++|...++.. ...|++|+.+++ .++--.|+-+.++..+. ...+|+
T Consensus 72 --~~~l~~LD~~E~~~Y~R~~v~v~~~dg~~---~~~a~vYv~~~~--~~~i~~G~W~~~~~~~~---------~~~~~~ 135 (165)
T 2jqv_A 72 --DAELNNFDVIEGNDYERVTVEVVRMDNSE---KVKVETYVWVNK--DDPRMYGEWDFEEWRVV---------HAEKFV 135 (165)
T ss_dssp --HHHHHHHHHTTTTSEEEEEEEEEETTTTE---EEEEEEEEETTT--TSCCSCSCCCHHHHHHH---------HHHHHH
T ss_pred --HHHHHHHHHhccCCcEEEEEEEEECCCCe---EEEEEEEEECCC--cccccCCCcCHHHHHHH---------HHHHHH
Confidence 37899999999989999999998765421 246999999762 22333354455543221 225566
Q ss_pred HHHHHHHHhC
Q 027275 155 FKLEKAMFDI 164 (225)
Q Consensus 155 ~~l~~~Lr~l 164 (225)
..+...+..+
T Consensus 136 ~~t~~~~~~~ 145 (165)
T 2jqv_A 136 ETFRKMLEWN 145 (165)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5555554444
No 4
>2g0q_A AT5G39720.1 protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana}
Probab=99.66 E-value=5e-16 Score=129.26 Aligned_cols=135 Identities=19% Similarity=0.198 Sum_probs=99.5
Q ss_pred ccEEEEccccccCCCCCC-----CceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEE-eeCCCcc
Q 027275 2 VFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYC-VRGGPEK 75 (225)
Q Consensus 2 ~~WVFgYGSLiW~p~f~~-----~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYr-i~~~~~~ 75 (225)
.+|||+||||||.+.++. ....+|+|+||+|.+ .. | ...|++ ++++++.|+|++|. |+
T Consensus 17 ~~~vFvYGSL~~~~~~~~~l~~~~~~~~A~l~Gy~l~~-~~-----~-~~yP~l----v~~~g~~V~G~v~~~v~----- 80 (173)
T 2g0q_A 17 LHNVFVYGSFQDPDVINVMLDRTPEIVSATLPGFQRFR-LK-----G-RLYPCI----VPSEKGEVHGKVLMGVT----- 80 (173)
T ss_dssp SEEEEECSGGGCHHHHHHHTSSCCEEEEEEEETCEECC-CC-----S-SSCCCE----ECCTTCEEEEEEEEEEC-----
T ss_pred CEEEEEEcCCCCCccCHHHhcCCCceeEEEEcCeEEEe-eC-----C-CeeeEE----EECCCCEEEEEEEEEcC-----
Confidence 589999999999996543 356899999999643 31 1 345654 45668899999975 76
Q ss_pred HHHHHHHHHHHhhcCCCcceEEEEecCCCCCCceeEEEEEEEecCCCCCCCCCCCCCHHHHHHHHHhccCCCCCcHHHHH
Q 027275 76 ERLAMEYLERRECEYDSKTLVDFYREGEPSQPALTGVIVFTSTPDKVSNKYYLGPAPLEEMARQIATAVGPCGNNRDYLF 155 (225)
Q Consensus 76 ~~e~l~~Ld~RE~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~~~~~n~~y~g~~~~e~~A~~I~~a~G~sG~N~eYL~ 155 (225)
++.++.||.+|...|.+..++|...++.. ...|++|+.+++ ..+++.+..+.++-.+. ....|+.
T Consensus 81 -~~~l~~LD~~Eg~~Y~R~~v~V~~~dg~~---~v~A~vYv~~~~--~~~~~~~~~~~~~W~~~---------~~~~~~~ 145 (173)
T 2g0q_A 81 -SDELENLDAVEGNEYERVTVGIVREDNSE---KMAVKTYMWINK--ADPDMFGEWNFEEWKRL---------HKKKFIE 145 (173)
T ss_dssp -HHHHHHHHHHHTTTEEEEEEEEEESSSSC---EEEEEEEEESCS--SCSSSCCCCHHHHHHHH---------HHHHHHH
T ss_pred -HHHHHHHHHHhhcCCEEEEEEEEECCCCe---EEEEEEEEEcCc--cccccCCCcCHHHHHHH---------hHHHHHH
Confidence 37999999999999999999998765322 257999999872 23567777777654432 2467888
Q ss_pred HHHHHHHhCCCC
Q 027275 156 KLEKAMFDIGHE 167 (225)
Q Consensus 156 ~l~~~Lr~lgi~ 167 (225)
...+.++..+-+
T Consensus 146 ~~~~~m~~~~~p 157 (173)
T 2g0q_A 146 TFKKIMECKKKP 157 (173)
T ss_dssp HHHHHHHHHTCC
T ss_pred HHHHHHHhccCC
Confidence 888888887754
No 5
>1xhs_A Hypothetical UPF0131 protein YTFP; structure, autostructure, northeast structural genomics consortium, NESG, protein structure initiative, PSI; NMR {Escherichia coli} SCOP: d.269.1.1
Probab=98.62 E-value=1.2e-07 Score=74.37 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=64.9
Q ss_pred cEEEEccccccCCCCCC-----CceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCccHH
Q 027275 3 FWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEKER 77 (225)
Q Consensus 3 ~WVFgYGSLiW~p~f~~-----~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~~~ 77 (225)
+.||.|||||-...... .-..+|++.||+..+. | ..|+.+.+ ++ .|+|.+|+|+.
T Consensus 1 ~~vFvYGTL~~g~~~~~~l~~a~~~g~a~l~gy~L~~~-------g--~yP~lv~~----~g-~V~Gevy~v~~------ 60 (121)
T 1xhs_A 1 MRIFVYGSLRHKQGNSHWMTNAQLLGDFSIDNYQLYSL-------G--HYPGAVPG----NG-TVHGEVYRIDN------ 60 (121)
T ss_dssp CEEEECSCTTCCCTTTHHHHTCEEEEEEEEEEEEEEEC-------S--SSEEEEEE----EE-EEEEEEEECCH------
T ss_pred CEEEEECCCCCcccchhhcCCCcEEEEEEEeCcEEEEe-------c--CCCeEEec----CC-EEEEEEEEeCH------
Confidence 36999999998666542 1225699999988755 2 36876643 34 99999999973
Q ss_pred HHHHHHHHHhh--cCCCcceEEEEecCCCCCCceeEEEEEEEec
Q 027275 78 LAMEYLERREC--EYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (225)
Q Consensus 78 e~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~alvYva~~ 119 (225)
+.|+.||.-|. +.|.+..+++ .+ ..|.+|+..+
T Consensus 61 ~~l~~LD~~Eg~~~~Y~R~~v~~--~~-------g~a~vY~~~~ 95 (121)
T 1xhs_A 61 ATLAELDALRTRGGEYARQLIQT--PY-------GSAWMYVYQR 95 (121)
T ss_dssp HHHHHHHHHHSTTSCEEEEEEEE--TT-------EEEEEEEECS
T ss_pred HHHHHHHHhcCCCCCEEEEEEEc--CC-------CEEEEEEECC
Confidence 78999999997 5788877763 21 2689999865
No 6
>1v30_A Hypothetical UPF0131 protein PH0828; alpha+beta, structural genomics, unknown function; HET: NHE; 1.40A {Pyrococcus horikoshii} SCOP: d.269.1.1
Probab=98.61 E-value=7.5e-08 Score=75.93 Aligned_cols=89 Identities=12% Similarity=-0.006 Sum_probs=62.3
Q ss_pred CccEEEEccccccCCCCCC-----CceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCcc
Q 027275 1 MVFWVFGYGSLVWNPGFEY-----DEKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPEK 75 (225)
Q Consensus 1 m~~WVFgYGSLiW~p~f~~-----~e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~~ 75 (225)
|.+.||.|||||-...... .-..+|.+.||++. . | . .|+.+.+ ++ .|+|.+|+|+.
T Consensus 6 ~~~~vFVYGTL~~g~~n~~~l~~a~~~g~a~l~gy~L~--~------g-~-yP~lv~~----~g-~V~Gev~~v~~---- 66 (124)
T 1v30_A 6 KSVRIAVYGTLRKGKPLHWYLKGAKFLGEDWIEGYQLY--F------E-Y-LPYAVKG----KG-KLKVEVYEVDK---- 66 (124)
T ss_dssp -CEEEEECSTTSTTSTTGGGGTTSEEEEEEEEEEEEEE--E------S-S-SEEEEEE----EE-EEEEEEEEECH----
T ss_pred CccEEEEECCCCCchHhHHhcCCCcEEEEEEEeeEEEE--E------C-C-CCEEEec----CC-EEEEEEEEECH----
Confidence 5678999999998776542 12356889999877 2 2 1 7876643 33 49999999983
Q ss_pred HHHHHHHHHHHh-hcCCCcceEEEEecCCCCCCceeEEEEEEEec
Q 027275 76 ERLAMEYLERRE-CEYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (225)
Q Consensus 76 ~~e~l~~Ld~RE-~~~y~~~~v~v~~~~~~~~~~~~~alvYva~~ 119 (225)
+.|+.||..| ...|.+..| ...++ .|.+|+..+
T Consensus 67 --~~l~~LD~~E~~~~Y~R~~V--~~~~g-------~A~vY~~~~ 100 (124)
T 1v30_A 67 --ETFERINEIEIGTGYRLVEV--STKFG-------KAFLWEWGS 100 (124)
T ss_dssp --HHHHHHTTCGGGGGEEEEEE--CCTTS-------CEEEEEECS
T ss_pred --HHHHHhhhccCCCCeEEEEE--EcCCC-------EEEEEEeCC
Confidence 7899999999 566776653 22221 289999864
No 7
>3jud_A AIG2-like domain-containing protein 1; cyclotransferase, gamma-glutamylamine cyclotransferase, gamma-glutamyl-epsilon-lysine; 0.98A {Homo sapiens} SCOP: d.269.1.1 PDB: 3jub_A 3juc_A
Probab=98.52 E-value=2e-07 Score=76.00 Aligned_cols=107 Identities=14% Similarity=0.166 Sum_probs=68.0
Q ss_pred cEEEEccccccCCCCC-CCc---eeeeEEeceEEEEEeecccCCCCCCCCceee--------eeeeCCCCeEEEEEEEee
Q 027275 3 FWVFGYGSLVWNPGFE-YDE---KILGFIKDYRRVFDLACIDHRGTPQHPARTC--------TLEKSQETICWGVAYCVR 70 (225)
Q Consensus 3 ~WVFgYGSLiW~p~f~-~~e---~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVl--------tL~~~~gg~c~GvaYri~ 70 (225)
-.||-||+|+-.-.-+ +-. ...|.+.|-.+.. ...|+.++ ...+..|+.|+|.+|+|+
T Consensus 2 ~~vFVYGTL~~G~~Nh~~l~~~~~~~A~~~G~~~t~----------~~Ypl~~~g~~~~P~l~~~p~~g~~V~G~ly~v~ 71 (153)
T 3jud_A 2 ALVFVYGTLKRGQPNHRVLRDGAHGSAAFRARGRTL----------EPYPLVIAGEHNIPWLLHLPGSGRLVEGEVYAVD 71 (153)
T ss_dssp EEEEECSTTSTTSTTGGGGTCGGGCCEEEEEEEEES----------SCBCEEEETTTTEEEEBSCTTSSBCCEEEEEEEC
T ss_pred CEEEEeCCCCCCCcChHHHhcCcCCCeEEEEEEEeC----------CCccEEEecCCCCceEEecCCCCCEEEEEEEEEC
Confidence 4699999999654322 111 2346666654321 23444432 222223568999999998
Q ss_pred CCCccHHHHHHHHHHHhh--cCCCcceEEEEecCC-------CCCCceeEEEEEEEecCCCCCCCCC
Q 027275 71 GGPEKERLAMEYLERREC--EYDSKTLVDFYREGE-------PSQPALTGVIVFTSTPDKVSNKYYL 128 (225)
Q Consensus 71 ~~~~~~~e~l~~Ld~RE~--~~y~~~~v~v~~~~~-------~~~~~~~~alvYva~~~~~~n~~y~ 128 (225)
+ +.|+.||+.|. ..|.+..++|...+. ...+..+.|++|+.+. .++++.
T Consensus 72 ~------~~l~~LD~~Eg~~~~Y~R~~v~V~~~~~~~~~~~~~~~g~~v~A~vYv~~~---~~~~~~ 129 (153)
T 3jud_A 72 E------RMLRFLDDFQSCPALYQRTVLRVQLLEDRAPGAEEPPAPTAVQCFVYSRAT---FPPEWA 129 (153)
T ss_dssp H------HHHHHHHHHTTTTTSCEEEEEEEEEEC------CCSCCCCEEEEEEEEBCC---CCGGGG
T ss_pred H------HHHHHHHHhcCCCCceEEEEEEEEeeccccccccccCCCCEEEEEEEEcCC---CCcccc
Confidence 3 79999999998 689999999976521 0112246899999876 555544
No 8
>1vkb_A Hypothetical protein; gamma-glutamyl cyclotransferase-like fold, structural genomi center for structural genomics, JCSG, protein structure INI PSI; 1.90A {Mus musculus} SCOP: d.269.1.1 PDB: 2kl2_A
Probab=98.20 E-value=2.2e-06 Score=70.27 Aligned_cols=99 Identities=15% Similarity=0.144 Sum_probs=64.6
Q ss_pred ccEEEEccccccCCC-CCCCc-------e--eee-EEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEee
Q 027275 2 VFWVFGYGSLVWNPG-FEYDE-------K--ILG-FIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVR 70 (225)
Q Consensus 2 ~~WVFgYGSLiW~p~-f~~~e-------~--~~a-~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~ 70 (225)
+..||-||+|+=... ..+-. + ..+ ++.||.-.|.-. ...| .+++++.+|..|+|.+|+|+
T Consensus 13 ~~~vFVYGTLk~G~~Nh~~l~~~r~~~A~~~G~~~tl~~YpL~~~g~-------~~~p--~~~i~p~~g~~V~Gevy~v~ 83 (161)
T 1vkb_A 13 MAHIFVYGTLKRGQPNHKVMLDHSHGLAAFRGRGCTVESFPLVIAGE-------HNIP--WLLYLPGKGHCVTGEIYEVD 83 (161)
T ss_dssp CEEEEECSTTSTTSTTTHHHHCGGGCCEEEEEEEEESSCBCEEEETT-------TTEE--EEESCTTSSBCCEEEEEEEC
T ss_pred ceEEEEcCCCCCCCcChHHHhhCcCCCceEEEEEeecCCceEEEecC-------CCcc--eeEeecCCCCEEEEEEEEEC
Confidence 357999999983221 11111 1 122 345666555521 1123 36667766779999999999
Q ss_pred CCCccHHHHHHHHHHHhh--cCCCcceEEEEe-------cCCCCCCceeEEEEEEEec
Q 027275 71 GGPEKERLAMEYLERREC--EYDSKTLVDFYR-------EGEPSQPALTGVIVFTSTP 119 (225)
Q Consensus 71 ~~~~~~~e~l~~Ld~RE~--~~y~~~~v~v~~-------~~~~~~~~~~~alvYva~~ 119 (225)
. +.|+.||.-|. +.|.+..++|.. .++ ..+.|++|+.+.
T Consensus 84 ~------~~L~~LD~~Eg~p~~Y~R~~v~V~~~~~~~~~~~g----~~v~A~vYv~~~ 131 (161)
T 1vkb_A 84 E------QMLRFLDDFEDCPSMYQRTALQVQVLEWEGDGDPG----DSVQCFVYTTAT 131 (161)
T ss_dssp H------HHHHHHHHHTTTTTSCEEEEEEEEEEEEC----CC----SEEEEEEEEESC
T ss_pred H------HHHHHHHHhcCCCCceEEEEEEEEecccccccCCC----CEEEEEEEEcCC
Confidence 4 78999999997 578888888865 222 135799999865
No 9
>2qik_A UPF0131 protein YKQA; NESG, SR631, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CIT; 1.35A {Bacillus subtilis}
Probab=97.90 E-value=4.8e-05 Score=67.10 Aligned_cols=93 Identities=15% Similarity=0.147 Sum_probs=63.9
Q ss_pred CccEEEEccccccCCCCCC----C--ceeeeEEeceEEEEEeecccCCCCCCCCceeeeeeeCCCCeEEEEEEEeeCCCc
Q 027275 1 MVFWVFGYGSLVWNPGFEY----D--EKILGFIKDYRRVFDLACIDHRGTPQHPARTCTLEKSQETICWGVAYCVRGGPE 74 (225)
Q Consensus 1 m~~WVFgYGSLiW~p~f~~----~--e~~~a~l~Gy~R~F~~~S~~hRGTpe~PGrVltL~~~~gg~c~GvaYri~~~~~ 74 (225)
|+..||-||||+=....+. . ...+++++| |-+..+ ..||++. .+..++.|.|-+|+|+.
T Consensus 1 m~~~vFVYGTL~~g~~n~~~l~~~~~~~~~~~~~g--~L~~~g--------~~P~lv~--~~~~~~~V~Gev~~v~~--- 65 (285)
T 2qik_A 1 MNSLLFVYGTLRKHEKNHHLLAQSACINEQARTKG--SLFAAK--------EGPTVVF--NDEDEGYIYGEVYEADE--- 65 (285)
T ss_dssp CCEEEEECSTTSTTSTTGGGGTTCEEEEEEEEEES--EEEEC----------CEEEEC--CTTCCSEEEEEEEEECH---
T ss_pred CCcEEEEECCCCCCCcChHHhCCCeEeeeeEEEEE--EEEEcC--------CCCeEEE--ccCCCCEEEEEEEEcCH---
Confidence 7889999999996654432 1 124678876 444322 1477663 22247899999999983
Q ss_pred cHHHHHHHHHHHhh--cCCCcceEEEEecCCCCCCceeEEEEEEEec
Q 027275 75 KERLAMEYLERREC--EYDSKTLVDFYREGEPSQPALTGVIVFTSTP 119 (225)
Q Consensus 75 ~~~e~l~~Ld~RE~--~~y~~~~v~v~~~~~~~~~~~~~alvYva~~ 119 (225)
+ .||.-|. +.|.|..++|...++ ...|.+|+.++
T Consensus 66 ---~---~LD~~E~~~~~Y~R~~v~v~~~~g-----~~~a~vY~~~~ 101 (285)
T 2qik_A 66 ---L---CIHKLDQFFQGYHKQTVFVETDVG-----IKIALIYFMNK 101 (285)
T ss_dssp ---H---HHHHHHHHSTTCEEEEEEEEETTE-----EEEEEEEECC-
T ss_pred ---H---HhHHhcCCCCceeEEEEEEEcCCC-----EEEEEEEEecc
Confidence 2 7999997 689998888877553 14799999876
No 10
>3cry_A Gamma-glutamyl cyclotransferase; enzyme, oxoproline; 1.70A {Homo sapiens} PDB: 2pn7_A 2rbh_A 2i5t_A* 2q53_A
Probab=74.41 E-value=2.2 Score=34.60 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=28.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCChhHHHHHH
Q 027275 147 CGNNRDYLFKLEKAMFDIGHEDDYIIELAN 176 (225)
Q Consensus 147 sG~N~eYL~~l~~~Lr~lgi~D~~L~~L~~ 176 (225)
..|+.+||..+++++++.|++++|++.|.+
T Consensus 133 ~~ps~~Yl~~i~~g~~~~gl~~~y~~~L~~ 162 (188)
T 3cry_A 133 APPSPQYKKIICMGAKENGLPLEYQEKLKA 162 (188)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHHHhCcCHHHHHHHhc
Confidence 679999999999999999999999999875
No 11
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=33.39 E-value=61 Score=28.83 Aligned_cols=51 Identities=6% Similarity=-0.102 Sum_probs=45.0
Q ss_pred CCHHHHHHHHHhccCCCCCcHHHHHHHHHHHHhCCCCChhHHHHHHHHHhH
Q 027275 131 APLEEMARQIATAVGPCGNNRDYLFKLEKAMFDIGHEDDYIIELANEVRKE 181 (225)
Q Consensus 131 ~~~e~~A~~I~~a~G~sG~N~eYL~~l~~~Lr~lgi~D~~L~~L~~~v~~~ 181 (225)
.+.++++++|.++--..+.+.+-|....+.|+.+|+.+..|..|..+.-++
T Consensus 90 ls~e~V~kiL~k~P~lL~~s~e~L~~~l~fL~~lGl~~~~i~~ll~~~P~l 140 (335)
T 4fp9_B 90 LNPEPVCVVLKKSPQLLKLPIMQMRKRSSYLQKLGLGEGKLKRVLYCCPEI 140 (335)
T ss_dssp CCHHHHHHHHHHCGGGGGSCHHHHHHHHHHHHHTTCTTTTHHHHHHHCGGG
T ss_pred CCHHHHHHHHHhChhhccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhCchh
Confidence 788999999999999999999999999999999999999888776554333
No 12
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.44 E-value=1.1e+02 Score=22.45 Aligned_cols=62 Identities=13% Similarity=0.052 Sum_probs=38.5
Q ss_pred cHHHHHHHHHHHHhCCCC---------ChhHHHHHHH-HHhHh------ccccccccccccccCCCCCCCCCCCCCCccc
Q 027275 150 NRDYLFKLEKAMFDIGHE---------DDYIIELANE-VRKEL------GTAEKGILKERKLVGSSSRMPLTKSHIPTLQ 213 (225)
Q Consensus 150 N~eYL~~l~~~Lr~lgi~---------D~~L~~L~~~-v~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (225)
..+.|.++.+.+++.|+. .+-...|.+. +++.. .....+.. ..++||++....+.+++|.|-
T Consensus 77 ~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~--~~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 77 VEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPH--SKIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTT--SSSCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCcc--ceeecchHHHHHHhCCCCEEE
Confidence 356777788888877763 3344556555 44431 11111112 348999999999999998763
Done!