Query 027277
Match_columns 225
No_of_seqs 207 out of 1297
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 07:33:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 6.4E-48 1.4E-52 316.7 24.2 206 1-208 92-299 (300)
2 PLN02565 cysteine synthase 100.0 2.6E-47 5.7E-52 322.5 25.5 224 1-224 97-320 (322)
3 PLN00011 cysteine synthase 100.0 2.1E-45 4.6E-50 311.7 27.1 225 1-225 99-323 (323)
4 PLN02556 cysteine synthase/L-3 100.0 1.2E-45 2.6E-50 316.9 24.1 225 1-225 141-365 (368)
5 PLN03013 cysteine synthase 100.0 2.8E-44 6E-49 310.4 22.8 209 1-209 205-414 (429)
6 TIGR01136 cysKM cysteine synth 100.0 9.2E-44 2E-48 299.1 25.2 212 1-212 88-299 (299)
7 TIGR01139 cysK cysteine syntha 100.0 5.4E-43 1.2E-47 294.3 24.8 211 1-212 87-298 (298)
8 PRK10717 cysteine synthase A; 100.0 6.8E-43 1.5E-47 297.5 24.9 221 1-223 94-327 (330)
9 PLN02356 phosphateglycerate ki 100.0 4.2E-43 9.2E-48 302.9 23.5 222 1-224 134-413 (423)
10 KOG1252 Cystathionine beta-syn 100.0 3E-44 6.5E-49 294.1 12.4 222 1-222 134-360 (362)
11 COG1171 IlvA Threonine dehydra 100.0 5.2E-43 1.1E-47 292.5 19.4 203 1-209 104-319 (347)
12 PRK11761 cysM cysteine synthas 100.0 1.1E-41 2.3E-46 285.7 23.3 203 1-213 93-295 (296)
13 cd01561 CBS_like CBS_like: Thi 100.0 2.5E-41 5.3E-46 283.4 24.9 206 1-208 83-291 (291)
14 TIGR01137 cysta_beta cystathio 100.0 2.9E-41 6.2E-46 299.0 24.6 221 1-223 92-321 (454)
15 TIGR01138 cysM cysteine syntha 100.0 5.7E-41 1.2E-45 280.6 23.2 202 1-212 89-290 (290)
16 PRK12483 threonine dehydratase 100.0 5.8E-41 1.3E-45 297.6 21.5 204 1-209 115-330 (521)
17 PLN02550 threonine dehydratase 100.0 1.1E-40 2.4E-45 297.6 20.9 204 1-209 187-402 (591)
18 TIGR01124 ilvA_2Cterm threonin 100.0 2.8E-40 6.1E-45 293.2 20.4 204 1-209 95-310 (499)
19 PRK08526 threonine dehydratase 100.0 9.1E-40 2E-44 283.7 19.0 202 1-209 98-311 (403)
20 PRK09224 threonine dehydratase 100.0 1.7E-39 3.6E-44 289.3 21.0 204 1-209 98-313 (504)
21 TIGR01127 ilvA_1Cterm threonin 100.0 1.5E-39 3.2E-44 282.0 18.6 201 1-209 78-290 (380)
22 PRK08638 threonine dehydratase 100.0 4.2E-39 9.1E-44 273.7 19.7 207 1-216 105-324 (333)
23 TIGR02079 THD1 threonine dehyd 100.0 5.2E-39 1.1E-43 280.0 20.4 202 1-209 94-310 (409)
24 PRK08639 threonine dehydratase 100.0 4.2E-39 9.1E-44 281.7 20.0 202 1-209 103-321 (420)
25 PRK06382 threonine dehydratase 100.0 3.9E-39 8.5E-44 281.0 19.4 201 1-209 103-315 (406)
26 PLN02970 serine racemase 100.0 5.7E-39 1.2E-43 272.8 19.0 203 1-209 105-321 (328)
27 PRK08198 threonine dehydratase 100.0 7E-39 1.5E-43 279.7 19.7 201 1-209 100-312 (404)
28 cd06448 L-Ser-dehyd Serine deh 100.0 1.3E-38 2.9E-43 269.2 20.6 206 1-209 81-308 (316)
29 PRK07048 serine/threonine dehy 100.0 6.7E-39 1.5E-43 272.0 18.8 201 1-209 102-314 (321)
30 PRK07334 threonine dehydratase 100.0 1E-38 2.2E-43 278.2 19.8 201 1-209 101-311 (403)
31 PRK08329 threonine synthase; V 100.0 7.4E-38 1.6E-42 267.8 21.4 201 1-207 134-347 (347)
32 PRK08813 threonine dehydratase 100.0 3E-38 6.5E-43 268.3 18.6 199 1-217 111-320 (349)
33 PRK06815 hypothetical protein; 100.0 4.8E-38 1E-42 266.2 18.9 201 1-209 98-311 (317)
34 PRK06110 hypothetical protein; 100.0 3.5E-38 7.7E-43 267.5 18.2 206 1-217 100-317 (322)
35 KOG1250 Threonine/serine dehyd 100.0 4.5E-38 9.8E-43 261.9 18.1 203 1-209 144-358 (457)
36 TIGR02991 ectoine_eutB ectoine 100.0 8.5E-38 1.8E-42 264.4 19.6 200 1-209 97-310 (317)
37 PRK06608 threonine dehydratase 100.0 9.8E-38 2.1E-42 265.8 19.4 200 1-209 102-314 (338)
38 PRK07591 threonine synthase; V 100.0 1.4E-37 3E-42 272.0 20.7 207 1-210 167-397 (421)
39 PRK08197 threonine synthase; V 100.0 2E-37 4.4E-42 269.4 20.9 205 1-209 157-386 (394)
40 PRK02991 D-serine dehydratase; 100.0 2.1E-37 4.6E-42 270.5 20.6 213 1-218 187-436 (441)
41 PRK06352 threonine synthase; V 100.0 1E-37 2.3E-42 267.1 18.0 205 1-210 105-324 (351)
42 PRK06721 threonine synthase; R 100.0 6.9E-37 1.5E-41 262.3 22.1 216 1-222 105-335 (352)
43 KOG1251 Serine racemase [Signa 100.0 1.7E-37 3.6E-42 244.0 16.2 201 1-209 103-315 (323)
44 PRK07476 eutB threonine dehydr 100.0 2.2E-37 4.7E-42 262.7 18.2 206 1-216 97-316 (322)
45 PRK08246 threonine dehydratase 100.0 2.6E-37 5.6E-42 260.8 17.6 199 1-209 98-308 (310)
46 cd01562 Thr-dehyd Threonine de 100.0 6.6E-37 1.4E-41 258.1 19.5 197 1-205 95-303 (304)
47 PRK08206 diaminopropionate amm 100.0 9.3E-37 2E-41 265.0 20.2 205 1-209 146-388 (399)
48 PRK07409 threonine synthase; V 100.0 1.6E-36 3.4E-41 260.4 21.3 204 1-210 108-328 (353)
49 PLN02569 threonine synthase 100.0 1.8E-35 3.9E-40 261.0 22.1 203 1-210 217-445 (484)
50 KOG1481 Cysteine synthase [Ami 100.0 3.8E-36 8.2E-41 240.4 15.8 222 1-224 130-379 (391)
51 cd01563 Thr-synth_1 Threonine 100.0 1.7E-35 3.7E-40 251.6 20.7 201 1-206 100-324 (324)
52 PRK06260 threonine synthase; V 100.0 1.3E-35 2.8E-40 258.3 20.3 205 1-210 145-374 (397)
53 TIGR02035 D_Ser_am_lyase D-ser 100.0 3.4E-35 7.4E-40 255.7 21.3 204 1-208 182-424 (431)
54 PRK06450 threonine synthase; V 100.0 1.9E-35 4.1E-40 251.5 19.2 191 1-207 127-338 (338)
55 PRK06381 threonine synthase; V 100.0 3.8E-35 8.2E-40 248.9 20.5 198 1-204 93-318 (319)
56 cd06447 D-Ser-dehyd D-Serine d 100.0 1.8E-35 4E-40 255.5 18.1 185 1-188 164-375 (404)
57 TIGR01747 diampropi_NH3ly diam 100.0 9.7E-35 2.1E-39 250.1 20.2 204 1-209 124-369 (376)
58 PRK05638 threonine synthase; V 100.0 1.5E-34 3.2E-39 254.7 21.0 201 1-208 142-360 (442)
59 cd06446 Trp-synth_B Tryptophan 100.0 1.1E-33 2.4E-38 243.5 21.1 207 1-209 113-364 (365)
60 TIGR03528 2_3_DAP_am_ly diamin 100.0 8.9E-34 1.9E-38 245.6 18.6 204 1-209 143-388 (396)
61 cd00640 Trp-synth-beta_II Tryp 100.0 3.2E-33 7E-38 228.7 20.7 163 1-201 80-243 (244)
62 TIGR00260 thrC threonine synth 100.0 4.6E-33 9.9E-38 237.1 20.0 204 1-208 101-328 (328)
63 cd06449 ACCD Aminocyclopropane 100.0 1.7E-33 3.7E-38 237.6 16.1 201 1-203 84-307 (307)
64 PRK13028 tryptophan synthase s 100.0 2.7E-32 5.8E-37 235.7 22.2 208 1-210 141-393 (402)
65 TIGR00263 trpB tryptophan synt 100.0 1.9E-32 4.1E-37 237.1 21.0 207 1-209 129-380 (385)
66 TIGR03844 cysteate_syn cysteat 100.0 6.6E-33 1.4E-37 240.2 17.9 205 1-209 147-385 (398)
67 PRK12390 1-aminocyclopropane-1 100.0 4.4E-33 9.6E-38 237.8 16.1 195 8-204 114-325 (337)
68 TIGR01275 ACC_deam_rel pyridox 100.0 4.7E-33 1E-37 235.4 14.8 202 1-205 88-302 (311)
69 PRK03910 D-cysteine desulfhydr 100.0 5.4E-33 1.2E-37 236.7 14.9 204 1-206 96-321 (331)
70 TIGR01415 trpB_rel pyridoxal-p 100.0 1.1E-31 2.4E-36 233.6 22.4 209 1-216 148-416 (419)
71 PRK12391 tryptophan synthase s 100.0 1.2E-31 2.6E-36 233.7 22.3 209 5-216 164-425 (427)
72 TIGR01274 ACC_deam 1-aminocycl 100.0 3.6E-32 7.7E-37 232.2 16.7 199 6-206 111-326 (337)
73 PRK04346 tryptophan synthase s 100.0 2.5E-31 5.5E-36 229.3 20.8 208 1-210 137-389 (397)
74 PLN02618 tryptophan synthase, 100.0 4.4E-31 9.5E-36 228.3 21.9 206 1-210 150-402 (410)
75 PRK13802 bifunctional indole-3 100.0 4.6E-30 1E-34 233.2 23.0 209 1-210 410-669 (695)
76 PRK13803 bifunctional phosphor 100.0 3.2E-29 6.9E-34 227.6 20.8 208 1-210 349-601 (610)
77 PF00291 PALP: Pyridoxal-phosp 100.0 8.6E-30 1.9E-34 214.7 15.2 193 1-200 86-305 (306)
78 PRK14045 1-aminocyclopropane-1 100.0 3.7E-29 8.1E-34 212.9 15.3 199 1-204 102-315 (329)
79 COG0498 ThrC Threonine synthas 100.0 1.5E-27 3.3E-32 205.3 17.6 204 1-209 156-378 (411)
80 COG2515 Acd 1-aminocyclopropan 99.9 3.6E-24 7.8E-29 174.0 13.2 196 9-205 108-314 (323)
81 PRK09225 threonine synthase; V 99.9 8.6E-20 1.9E-24 160.5 19.4 198 1-210 162-418 (462)
82 COG0133 TrpB Tryptophan syntha 99.8 1.8E-18 3.9E-23 141.5 17.5 200 9-210 145-386 (396)
83 cd01560 Thr-synth_2 Threonine 99.8 3E-18 6.5E-23 150.9 19.7 201 1-210 163-422 (460)
84 COG3048 DsdA D-serine dehydrat 99.8 4.4E-18 9.6E-23 138.5 11.5 182 1-185 190-398 (443)
85 COG1350 Predicted alternative 99.8 5.5E-17 1.2E-21 133.2 16.2 211 5-217 165-427 (432)
86 KOG1395 Tryptophan synthase be 99.6 2.2E-14 4.8E-19 119.0 14.6 201 7-209 211-453 (477)
87 PF00107 ADH_zinc_N: Zinc-bind 88.5 3.6 7.8E-05 29.4 7.6 82 10-110 7-89 (130)
88 KOG2616 Pyridoxalphosphate-dep 86.0 1.8 4E-05 34.7 5.0 42 147-188 148-189 (266)
89 TIGR03581 EF_0839 conserved hy 83.9 19 0.00041 29.0 9.7 143 28-184 39-194 (236)
90 PF13561 adh_short_C2: Enoyl-( 77.3 23 0.0005 28.2 8.8 74 9-88 12-85 (241)
91 COG0623 FabI Enoyl-[acyl-carri 74.6 24 0.00052 28.8 7.8 70 10-86 25-94 (259)
92 cd06533 Glyco_transf_WecG_TagA 73.2 39 0.00085 25.8 9.2 92 10-109 39-131 (171)
93 PRK08410 2-hydroxyacid dehydro 72.5 46 0.001 28.2 9.7 98 8-115 159-261 (311)
94 COG1052 LdhA Lactate dehydroge 70.3 47 0.001 28.4 9.2 83 9-99 161-252 (324)
95 PF03808 Glyco_tran_WecB: Glyc 69.4 49 0.0011 25.3 9.2 92 10-109 41-133 (172)
96 PF02826 2-Hacid_dh_C: D-isome 68.8 11 0.00023 29.1 4.7 99 7-114 49-156 (178)
97 COG2185 Sbm Methylmalonyl-CoA 68.0 29 0.00063 26.0 6.5 36 67-102 53-92 (143)
98 PF12000 Glyco_trans_4_3: Gkyc 67.3 13 0.00028 28.8 4.7 39 66-109 53-94 (171)
99 COG2242 CobL Precorrin-6B meth 66.1 63 0.0014 25.4 8.6 129 70-204 27-165 (187)
100 cd06324 PBP1_ABC_sugar_binding 65.1 67 0.0015 26.5 9.2 43 65-110 192-238 (305)
101 PF00091 Tubulin: Tubulin/FtsZ 61.3 40 0.00086 26.8 6.8 58 53-110 90-162 (216)
102 PF02887 PK_C: Pyruvate kinase 61.2 30 0.00066 24.5 5.5 44 65-114 7-50 (117)
103 PRK15408 autoinducer 2-binding 60.2 1.1E+02 0.0024 26.1 11.0 65 41-110 176-242 (336)
104 cd06303 PBP1_LuxPQ_Quorum_Sens 59.0 92 0.002 25.2 8.8 40 68-110 183-224 (280)
105 PRK06202 hypothetical protein; 58.4 15 0.00031 29.5 3.8 39 77-115 62-100 (232)
106 PRK07478 short chain dehydroge 58.0 94 0.002 24.7 9.2 71 10-86 23-93 (254)
107 PRK12743 oxidoreductase; Provi 57.4 98 0.0021 24.7 9.4 73 10-87 19-91 (256)
108 cd06313 PBP1_ABC_sugar_binding 56.5 1E+02 0.0023 24.8 9.5 33 76-110 183-216 (272)
109 PRK15452 putative protease; Pr 56.1 1.5E+02 0.0033 26.6 10.6 94 6-108 12-115 (443)
110 PF07071 DUF1341: Protein of u 54.8 49 0.0011 26.3 5.9 158 10-180 18-190 (218)
111 PF04989 CmcI: Cephalosporin h 54.3 38 0.00082 27.0 5.4 46 66-113 24-70 (206)
112 TIGR02039 CysD sulfate adenyly 54.1 35 0.00075 28.8 5.4 72 152-223 5-78 (294)
113 PRK08159 enoyl-(acyl carrier p 51.6 1.3E+02 0.0028 24.5 8.6 73 8-87 27-99 (272)
114 cd06320 PBP1_allose_binding Pe 51.3 1.3E+02 0.0027 24.2 9.3 32 76-109 182-215 (275)
115 PF13433 Peripla_BP_5: Peripla 51.1 65 0.0014 28.1 6.7 85 11-101 127-213 (363)
116 PRK06932 glycerate dehydrogena 50.0 51 0.0011 28.0 5.9 84 9-99 162-249 (314)
117 PRK13243 glyoxylate reductase; 49.4 1E+02 0.0022 26.4 7.7 83 9-98 165-255 (333)
118 COG3473 Maleate cis-trans isom 49.2 1.3E+02 0.0028 24.2 7.5 81 4-86 104-189 (238)
119 PRK06487 glycerate dehydrogena 48.9 1.7E+02 0.0036 24.9 9.6 96 8-112 162-260 (317)
120 PRK09701 D-allose transporter 48.9 1.6E+02 0.0034 24.5 11.8 90 18-111 157-251 (311)
121 PRK08862 short chain dehydroge 48.9 1.3E+02 0.0029 23.8 9.5 72 10-86 22-93 (227)
122 PRK05253 sulfate adenylyltrans 48.3 54 0.0012 27.8 5.7 72 152-223 13-86 (301)
123 COG0826 Collagenase and relate 48.2 1.8E+02 0.004 25.1 10.4 93 7-108 16-118 (347)
124 PRK08703 short chain dehydroge 47.5 1.3E+02 0.0028 23.7 7.7 74 10-86 23-97 (239)
125 PRK05867 short chain dehydroge 47.3 1.4E+02 0.0031 23.7 9.1 72 10-87 26-97 (253)
126 TIGR00696 wecB_tagA_cpsF bacte 47.0 1.3E+02 0.0029 23.2 9.1 68 12-87 43-111 (177)
127 cd06308 PBP1_sensor_kinase_lik 46.7 1.5E+02 0.0032 23.7 9.5 42 68-112 175-218 (270)
128 PRK07035 short chain dehydroge 46.4 1.5E+02 0.0032 23.5 9.1 71 10-86 25-95 (252)
129 PRK08226 short chain dehydroge 46.2 1.5E+02 0.0033 23.6 9.0 70 10-86 23-92 (263)
130 PRK06197 short chain dehydroge 45.6 1.6E+02 0.0035 24.3 8.3 73 10-87 33-106 (306)
131 COG0111 SerA Phosphoglycerate 45.3 1.4E+02 0.0029 25.6 7.8 84 9-99 157-249 (324)
132 KOG2862 Alanine-glyoxylate ami 45.2 1E+02 0.0022 26.5 6.7 52 6-57 104-156 (385)
133 PRK07097 gluconate 5-dehydroge 44.5 1.6E+02 0.0036 23.6 9.2 72 10-87 27-98 (265)
134 PRK08643 acetoin reductase; Va 44.4 1.6E+02 0.0035 23.4 9.3 72 10-87 19-90 (256)
135 PF13649 Methyltransf_25: Meth 43.9 24 0.00052 23.9 2.6 33 82-115 4-36 (101)
136 cd06310 PBP1_ABC_sugar_binding 43.3 1.7E+02 0.0036 23.3 11.1 42 67-111 175-218 (273)
137 PF11760 CbiG_N: Cobalamin syn 42.7 81 0.0018 21.3 4.8 48 70-117 5-52 (84)
138 PRK06139 short chain dehydroge 42.4 2.1E+02 0.0046 24.2 8.8 73 9-87 23-95 (330)
139 PRK07533 enoyl-(acyl carrier p 42.2 1.8E+02 0.0039 23.3 8.5 73 8-87 27-99 (258)
140 cd06323 PBP1_ribose_binding Pe 42.1 1.7E+02 0.0037 23.1 9.6 33 76-110 181-214 (268)
141 PLN00220 tubulin beta chain; P 42.1 35 0.00075 30.6 3.9 66 47-112 90-172 (447)
142 PF05185 PRMT5: PRMT5 arginine 42.0 42 0.00091 30.1 4.4 37 79-115 190-226 (448)
143 PRK06436 glycerate dehydrogena 41.8 92 0.002 26.3 6.2 82 10-98 138-224 (303)
144 PRK06505 enoyl-(acyl carrier p 41.3 1.9E+02 0.0042 23.5 8.8 74 7-87 23-96 (271)
145 cd06287 PBP1_LacI_like_8 Ligan 41.3 1.9E+02 0.0041 23.3 8.1 31 76-108 178-212 (269)
146 PLN02928 oxidoreductase family 41.2 1.4E+02 0.0031 25.7 7.4 84 8-98 173-277 (347)
147 PRK12563 sulfate adenylyltrans 40.7 84 0.0018 26.8 5.7 72 151-223 22-96 (312)
148 COG1611 Predicted Rossmann fol 40.5 69 0.0015 25.5 5.0 50 61-113 31-80 (205)
149 KOG3857 Alcohol dehydrogenase, 40.5 2.1E+02 0.0045 25.1 7.9 80 4-90 56-140 (465)
150 PRK15395 methyl-galactoside AB 40.4 66 0.0014 27.1 5.2 33 76-110 225-258 (330)
151 COG0796 MurI Glutamate racemas 40.3 2.2E+02 0.0047 23.8 7.9 48 66-116 56-104 (269)
152 PRK08589 short chain dehydroge 40.0 2E+02 0.0043 23.3 8.6 71 10-87 23-93 (272)
153 PF12683 DUF3798: Protein of u 40.0 70 0.0015 26.7 5.0 84 30-115 16-100 (275)
154 PRK15409 bifunctional glyoxyla 40.0 1.6E+02 0.0034 25.2 7.4 83 10-99 161-252 (323)
155 PRK07062 short chain dehydroge 40.0 1.9E+02 0.0042 23.1 8.3 73 10-87 25-98 (265)
156 PRK05866 short chain dehydroge 39.8 2.2E+02 0.0047 23.5 9.2 71 11-87 58-128 (293)
157 PRK08340 glucose-1-dehydrogena 39.6 2E+02 0.0042 23.0 9.1 71 10-87 17-87 (259)
158 COG1797 CobB Cobyrinic acid a, 39.4 63 0.0014 28.9 4.9 51 62-113 100-150 (451)
159 PRK07114 keto-hydroxyglutarate 39.1 2.1E+02 0.0045 23.1 8.1 42 66-109 122-164 (222)
160 PRK07370 enoyl-(acyl carrier p 38.7 2.1E+02 0.0045 23.0 8.7 75 9-87 24-98 (258)
161 PRK06720 hypothetical protein; 38.5 1.7E+02 0.0038 22.1 9.0 69 11-85 34-102 (169)
162 PRK07814 short chain dehydroge 38.3 2.1E+02 0.0045 22.9 9.3 72 9-86 26-97 (263)
163 KOG1197 Predicted quinone oxid 38.1 1.6E+02 0.0034 24.8 6.6 75 9-100 163-238 (336)
164 PF08392 FAE1_CUT1_RppA: FAE1/ 37.9 91 0.002 26.3 5.5 47 176-225 86-134 (290)
165 PLN02925 4-hydroxy-3-methylbut 37.9 2.6E+02 0.0057 26.8 8.8 25 149-173 706-730 (733)
166 PRK05854 short chain dehydroge 37.6 2.1E+02 0.0046 23.9 7.9 72 10-87 31-104 (313)
167 cd06341 PBP1_ABC_ligand_bindin 37.5 2.4E+02 0.0052 23.5 8.3 33 76-109 188-220 (341)
168 PRK13581 D-3-phosphoglycerate 37.5 1.7E+02 0.0037 26.8 7.7 84 9-99 155-246 (526)
169 PRK09242 tropinone reductase; 37.4 2.1E+02 0.0046 22.7 8.8 73 10-87 26-99 (257)
170 PRK08085 gluconate 5-dehydroge 37.3 2.1E+02 0.0045 22.7 9.2 72 10-87 26-97 (254)
171 PRK07666 fabG 3-ketoacyl-(acyl 37.2 2E+02 0.0044 22.5 9.3 72 10-87 24-95 (239)
172 cd06317 PBP1_ABC_sugar_binding 37.2 2.1E+02 0.0046 22.7 9.3 42 67-110 178-221 (275)
173 PRK06701 short chain dehydroge 36.9 2.4E+02 0.0052 23.2 9.1 71 11-87 64-135 (290)
174 PRK06194 hypothetical protein; 36.8 2.3E+02 0.0049 23.0 9.2 72 10-87 23-94 (287)
175 cd02187 beta_tubulin The tubul 36.8 72 0.0016 28.4 5.0 66 47-112 89-171 (425)
176 cd06280 PBP1_LacI_like_4 Ligan 36.6 1.1E+02 0.0024 24.4 5.8 33 76-110 172-208 (263)
177 cd02186 alpha_tubulin The tubu 36.3 82 0.0018 28.1 5.3 60 47-106 91-165 (434)
178 TIGR01327 PGDH D-3-phosphoglyc 36.1 1.8E+02 0.0039 26.7 7.6 85 8-99 152-245 (525)
179 cd06316 PBP1_ABC_sugar_binding 35.9 87 0.0019 25.6 5.2 33 76-110 186-219 (294)
180 cd04502 SGNH_hydrolase_like_7 35.8 1.8E+02 0.0039 21.5 7.6 36 76-111 50-97 (171)
181 COG2247 LytB Putative cell wal 35.8 88 0.0019 26.8 5.0 39 2-40 85-123 (337)
182 PRK07832 short chain dehydroge 35.8 2.3E+02 0.0051 22.8 7.8 73 10-87 17-89 (272)
183 TIGR03282 methan_mark_13 putat 35.7 2.7E+02 0.0059 24.2 8.0 89 16-113 18-114 (352)
184 PRK11041 DNA-binding transcrip 35.7 1.1E+02 0.0023 25.1 5.7 34 76-111 213-250 (309)
185 PF13377 Peripla_BP_3: Peripla 35.6 1.7E+02 0.0037 21.1 8.1 33 76-110 68-104 (160)
186 cd06059 Tubulin The tubulin su 35.5 81 0.0017 27.5 5.1 67 46-112 48-131 (382)
187 cd06312 PBP1_ABC_sugar_binding 35.4 1.1E+02 0.0025 24.4 5.7 34 76-111 183-218 (271)
188 cd01574 PBP1_LacI Ligand-bindi 35.2 2.2E+02 0.0047 22.5 7.4 32 77-110 175-210 (264)
189 COG1064 AdhP Zn-dependent alco 35.2 3E+02 0.0065 23.8 9.0 76 10-109 183-258 (339)
190 PRK05876 short chain dehydroge 35.2 2.5E+02 0.0053 22.9 9.2 72 9-86 22-93 (275)
191 PF04198 Sugar-bind: Putative 35.1 1.7E+02 0.0037 23.9 6.7 82 31-115 5-88 (255)
192 COG3962 Acetolactate synthase 35.0 1.4E+02 0.0031 27.2 6.3 102 11-117 224-335 (617)
193 cd01455 vWA_F11C1-5a_type Von 34.6 1.6E+02 0.0035 23.1 6.1 35 169-204 88-123 (191)
194 PLN02565 cysteine synthase 34.6 2.9E+02 0.0063 23.5 9.3 33 81-115 70-102 (322)
195 PRK13794 hypothetical protein; 34.5 1.2E+02 0.0025 27.6 6.0 74 149-224 229-304 (479)
196 PRK10669 putative cation:proto 34.3 3.7E+02 0.0081 24.7 10.0 42 68-109 472-514 (558)
197 KOG1719 Dual specificity phosp 34.2 1.9E+02 0.0041 22.2 6.1 83 141-225 49-140 (183)
198 cd02190 epsilon_tubulin The tu 34.1 71 0.0015 27.9 4.5 62 47-108 59-135 (379)
199 TIGR00273 iron-sulfur cluster- 34.1 1.7E+02 0.0037 26.2 6.9 70 11-85 58-141 (432)
200 cd06284 PBP1_LacI_like_6 Ligan 33.9 1E+02 0.0022 24.4 5.2 33 75-109 175-211 (267)
201 PRK13018 cell division protein 33.8 1.4E+02 0.003 26.3 6.2 45 68-113 105-154 (378)
202 PRK09526 lacI lac repressor; R 33.8 2.2E+02 0.0048 23.7 7.5 33 76-110 240-276 (342)
203 COG0800 Eda 2-keto-3-deoxy-6-p 33.7 1.1E+02 0.0025 24.4 5.2 41 7-54 75-115 (211)
204 PRK06124 gluconate 5-dehydroge 33.5 2.4E+02 0.0053 22.3 9.3 72 10-87 28-99 (256)
205 cd06290 PBP1_LacI_like_9 Ligan 33.4 1.2E+02 0.0025 24.2 5.4 33 76-110 176-212 (265)
206 PRK12826 3-ketoacyl-(acyl-carr 33.4 2.3E+02 0.0051 22.1 9.2 73 10-88 23-95 (251)
207 PRK07774 short chain dehydroge 33.4 2.4E+02 0.0052 22.2 9.2 72 10-87 23-94 (250)
208 TIGR03325 BphB_TodD cis-2,3-di 33.2 2.5E+02 0.0055 22.4 7.8 67 10-86 22-89 (262)
209 PRK05650 short chain dehydroge 33.1 2.6E+02 0.0056 22.5 9.2 72 10-87 17-88 (270)
210 cd06309 PBP1_YtfQ_like Peripla 33.0 2.5E+02 0.0055 22.3 9.5 33 76-110 185-221 (273)
211 cd06273 PBP1_GntR_like_1 This 33.0 1E+02 0.0022 24.5 5.0 34 75-110 177-214 (268)
212 PTZ00335 tubulin alpha chain; 32.9 73 0.0016 28.6 4.4 57 47-103 92-163 (448)
213 cd01844 SGNH_hydrolase_like_6 32.7 82 0.0018 23.7 4.2 39 76-114 57-104 (177)
214 PRK10401 DNA-binding transcrip 32.5 1.2E+02 0.0027 25.4 5.7 34 75-110 236-273 (346)
215 TIGR02637 RhaS rhamnose ABC tr 32.5 2.8E+02 0.006 22.7 8.8 33 75-109 184-218 (302)
216 PRK11914 diacylglycerol kinase 32.1 2.6E+02 0.0055 23.4 7.5 36 76-115 64-99 (306)
217 PRK12481 2-deoxy-D-gluconate 3 32.1 2.6E+02 0.0056 22.2 8.8 70 10-87 25-94 (251)
218 cd06274 PBP1_FruR Ligand bindi 32.1 1.2E+02 0.0027 24.0 5.4 34 76-111 178-215 (264)
219 COG1691 NCAIR mutase (PurE)-re 31.9 2.7E+02 0.0059 22.7 7.0 49 59-111 155-203 (254)
220 cd08171 GlyDH-like2 Glycerol d 31.8 2E+02 0.0044 24.6 6.9 91 12-111 17-110 (345)
221 PRK06603 enoyl-(acyl carrier p 31.6 2.7E+02 0.0059 22.3 8.5 70 10-86 27-96 (260)
222 TIGR02415 23BDH acetoin reduct 31.6 2.6E+02 0.0056 22.0 9.1 71 10-86 17-87 (254)
223 cd00561 CobA_CobO_BtuR ATP:cor 31.5 77 0.0017 24.1 3.8 36 79-114 6-41 (159)
224 cd06322 PBP1_ABC_sugar_binding 31.5 2.6E+02 0.0057 22.1 9.2 32 76-109 179-211 (267)
225 cd06283 PBP1_RegR_EndR_KdgR_li 31.4 1.4E+02 0.0031 23.5 5.7 33 76-110 178-214 (267)
226 PRK08277 D-mannonate oxidoredu 31.3 2.8E+02 0.006 22.3 9.1 71 10-86 27-97 (278)
227 PRK06172 short chain dehydroge 31.3 2.6E+02 0.0057 22.0 9.3 71 10-86 24-94 (253)
228 PRK12384 sorbitol-6-phosphate 31.2 2.7E+02 0.0058 22.1 8.4 72 10-87 19-92 (259)
229 TIGR02742 TrbC_Ftype type-F co 31.2 1.7E+02 0.0037 21.4 5.4 42 1-42 9-51 (130)
230 PF12847 Methyltransf_18: Meth 31.2 76 0.0016 21.6 3.5 32 79-114 5-36 (112)
231 cd06294 PBP1_ycjW_transcriptio 31.1 1.5E+02 0.0032 23.5 5.8 33 76-110 183-219 (270)
232 PRK06128 oxidoreductase; Provi 31.0 3E+02 0.0065 22.6 9.3 24 62-86 121-144 (300)
233 TIGR02417 fruct_sucro_rep D-fr 31.0 2.8E+02 0.006 22.9 7.6 33 76-110 238-273 (327)
234 COG1139 Uncharacterized conser 30.9 2.4E+02 0.0053 25.3 7.1 70 11-84 72-154 (459)
235 cd01825 SGNH_hydrolase_peri1 S 30.9 2.3E+02 0.0049 21.2 8.0 38 75-112 55-105 (189)
236 COG1010 CobJ Precorrin-3B meth 30.9 3E+02 0.0065 22.6 8.2 69 11-83 40-110 (249)
237 cd01477 vWA_F09G8-8_type VWA F 30.8 2.6E+02 0.0056 21.8 7.5 51 152-204 87-143 (193)
238 COG4558 ChuT ABC-type hemin tr 30.8 3.3E+02 0.0072 23.0 9.4 24 5-28 110-133 (300)
239 COG0763 LpxB Lipid A disacchar 30.8 75 0.0016 27.9 4.0 32 79-110 3-37 (381)
240 PRK15454 ethanol dehydrogenase 30.8 2.6E+02 0.0055 24.6 7.4 22 66-90 98-119 (395)
241 PLN03139 formate dehydrogenase 30.7 3.8E+02 0.0081 23.6 9.0 95 8-111 213-317 (386)
242 cd06288 PBP1_sucrose_transcrip 30.6 2.7E+02 0.0058 22.0 7.2 41 67-110 169-213 (269)
243 COG0604 Qor NADPH:quinone redu 30.3 3.4E+02 0.0074 23.0 8.8 84 7-110 157-241 (326)
244 PRK03525 crotonobetainyl-CoA:c 30.3 2.4E+02 0.0053 24.8 7.3 16 11-26 31-46 (405)
245 TIGR02469 CbiT precorrin-6Y C5 30.3 1.8E+02 0.0039 19.8 5.5 33 78-114 22-54 (124)
246 PRK08217 fabG 3-ketoacyl-(acyl 30.2 2.7E+02 0.0058 21.8 9.2 71 10-86 22-92 (253)
247 TIGR00438 rrmJ cell division p 30.2 1.2E+02 0.0025 23.3 4.8 35 77-114 34-68 (188)
248 PTZ00387 epsilon tubulin; Prov 30.1 90 0.0019 28.2 4.5 58 47-104 91-163 (465)
249 PRK08594 enoyl-(acyl carrier p 30.1 2.9E+02 0.0063 22.2 8.3 73 9-87 25-98 (257)
250 PF00072 Response_reg: Respons 30.1 1.6E+02 0.0036 19.5 5.1 45 68-114 37-82 (112)
251 COG1597 LCB5 Sphingosine kinas 30.1 1.8E+02 0.004 24.5 6.2 75 30-115 19-94 (301)
252 PRK05872 short chain dehydroge 30.1 3.1E+02 0.0068 22.5 8.2 71 10-87 26-96 (296)
253 cd06281 PBP1_LacI_like_5 Ligan 30.1 1.5E+02 0.0032 23.6 5.6 34 75-110 175-212 (269)
254 PF00106 adh_short: short chai 30.0 2.2E+02 0.0047 20.7 7.1 68 15-86 22-90 (167)
255 COG3635 Predicted phosphoglyce 29.8 1E+02 0.0022 27.1 4.5 39 12-51 261-304 (408)
256 cd06293 PBP1_LacI_like_11 Liga 29.7 1.5E+02 0.0033 23.6 5.6 33 76-110 177-213 (269)
257 PRK08690 enoyl-(acyl carrier p 29.5 3E+02 0.0065 22.1 8.8 71 10-87 25-95 (261)
258 PF00764 Arginosuc_synth: Argi 29.4 1.9E+02 0.0041 25.5 6.3 90 10-108 43-138 (388)
259 COG0683 LivK ABC-type branched 29.3 3.7E+02 0.0079 23.0 9.0 95 13-114 143-240 (366)
260 cd02189 delta_tubulin The tubu 29.3 74 0.0016 28.5 3.9 63 47-109 86-163 (446)
261 PRK07791 short chain dehydroge 29.2 3.2E+02 0.0069 22.4 9.1 73 11-87 24-103 (286)
262 PRK00050 16S rRNA m(4)C1402 me 29.2 1.3E+02 0.0027 25.5 5.0 51 61-114 3-55 (296)
263 PRK07063 short chain dehydroge 29.2 2.9E+02 0.0064 21.9 9.0 73 10-87 24-97 (260)
264 COG1597 LCB5 Sphingosine kinas 29.1 1.2E+02 0.0025 25.7 4.8 75 6-91 22-98 (301)
265 cd06279 PBP1_LacI_like_3 Ligan 29.0 1.5E+02 0.0033 23.9 5.5 33 76-110 195-231 (283)
266 TIGR00730 conserved hypothetic 28.9 2.7E+02 0.0059 21.5 9.8 49 62-113 17-66 (178)
267 PRK10727 DNA-binding transcrip 28.8 1.5E+02 0.0033 24.8 5.6 34 75-110 236-273 (343)
268 COG1454 EutG Alcohol dehydroge 28.5 4.1E+02 0.0089 23.4 10.6 85 7-98 18-106 (377)
269 TIGR00708 cobA cob(I)alamin ad 28.5 93 0.002 24.1 3.8 37 78-114 8-44 (173)
270 PF02384 N6_Mtase: N-6 DNA Met 28.4 59 0.0013 27.2 3.0 39 77-115 47-89 (311)
271 PLN03028 pyrophosphate--fructo 28.3 1.5E+02 0.0032 27.9 5.7 44 65-110 164-209 (610)
272 cd06297 PBP1_LacI_like_12 Liga 28.2 1.8E+02 0.0039 23.3 5.8 34 76-111 180-217 (269)
273 TIGR01064 pyruv_kin pyruvate k 28.1 4.6E+02 0.0099 23.8 10.7 108 1-114 288-407 (473)
274 PRK07677 short chain dehydroge 27.9 3.1E+02 0.0066 21.7 9.1 71 10-86 18-88 (252)
275 TIGR03702 lip_kinase_YegS lipi 27.9 3.5E+02 0.0076 22.4 8.4 38 77-115 53-91 (293)
276 PRK13057 putative lipid kinase 27.9 3.5E+02 0.0075 22.3 7.9 70 10-91 19-89 (287)
277 PF00731 AIRC: AIR carboxylase 27.7 2.7E+02 0.0058 21.0 8.2 81 21-112 5-87 (150)
278 cd01544 PBP1_GalR Ligand-bindi 27.6 3.2E+02 0.0069 21.8 8.1 33 76-110 179-215 (270)
279 cd08550 GlyDH-like Glycerol_de 27.6 2.9E+02 0.0063 23.6 7.2 91 11-111 16-109 (349)
280 PRK07984 enoyl-(acyl carrier p 27.6 3.3E+02 0.0072 22.0 8.6 71 10-87 25-95 (262)
281 PRK10586 putative oxidoreducta 27.6 3.3E+02 0.0071 23.6 7.5 93 11-113 27-120 (362)
282 COG2242 CobL Precorrin-6B meth 27.5 1.2E+02 0.0026 23.9 4.2 75 17-108 58-133 (187)
283 KOG3325 Membrane coat complex 27.4 71 0.0015 24.2 2.8 44 1-53 91-134 (183)
284 PRK12483 threonine dehydratase 27.4 4.9E+02 0.011 23.9 9.4 34 81-116 88-121 (521)
285 COG2227 UbiG 2-polyprenyl-3-me 27.4 2.6E+02 0.0057 22.9 6.3 29 12-43 76-104 (243)
286 PRK05986 cob(I)alamin adenolsy 27.3 99 0.0021 24.3 3.8 37 78-114 25-61 (191)
287 PRK03659 glutathione-regulated 27.2 5.2E+02 0.011 24.1 9.7 43 68-110 455-498 (601)
288 PRK07574 formate dehydrogenase 27.2 2.6E+02 0.0057 24.6 6.8 94 9-111 207-310 (385)
289 COG0052 RpsB Ribosomal protein 27.2 2E+02 0.0043 23.7 5.5 38 11-52 58-95 (252)
290 PRK07523 gluconate 5-dehydroge 26.9 3.2E+02 0.0069 21.6 9.1 71 11-87 28-98 (255)
291 PF09949 DUF2183: Uncharacteri 26.9 1.5E+02 0.0033 20.6 4.3 39 178-221 52-90 (100)
292 COG0062 Uncharacterized conser 26.8 2.2E+02 0.0047 22.7 5.7 55 152-209 7-65 (203)
293 cd02202 FtsZ_type2 FtsZ is a G 26.8 1.7E+02 0.0037 25.3 5.5 36 77-112 98-139 (349)
294 PRK11790 D-3-phosphoglycerate 26.8 1.8E+02 0.0038 25.8 5.7 95 8-111 165-265 (409)
295 PF00175 NAD_binding_1: Oxidor 26.8 1.1E+02 0.0023 20.7 3.7 46 169-218 2-47 (109)
296 PRK12935 acetoacetyl-CoA reduc 26.7 3.1E+02 0.0068 21.4 9.3 72 10-86 23-94 (247)
297 PRK08063 enoyl-(acyl carrier p 26.6 3.2E+02 0.0069 21.4 9.5 73 10-87 21-93 (250)
298 TIGR01162 purE phosphoribosyla 26.5 1.2E+02 0.0025 23.1 3.9 43 67-113 43-86 (156)
299 PRK07109 short chain dehydroge 26.4 4E+02 0.0086 22.5 9.2 72 10-87 25-96 (334)
300 cd06296 PBP1_CatR_like Ligand- 26.4 1.8E+02 0.0039 23.1 5.4 34 75-110 177-214 (270)
301 PRK06200 2,3-dihydroxy-2,3-dih 26.3 3.4E+02 0.0073 21.6 7.4 68 9-86 22-90 (263)
302 cd06285 PBP1_LacI_like_7 Ligan 26.2 1.5E+02 0.0034 23.4 5.0 33 76-110 175-211 (265)
303 PRK12354 carbamate kinase; Rev 26.1 55 0.0012 27.8 2.4 54 34-90 130-187 (307)
304 PRK12429 3-hydroxybutyrate deh 26.1 3.3E+02 0.0071 21.4 9.3 72 10-87 21-92 (258)
305 PRK13394 3-hydroxybutyrate deh 25.8 3.3E+02 0.0073 21.4 9.0 73 9-87 23-95 (262)
306 PRK12745 3-ketoacyl-(acyl-carr 25.7 3.3E+02 0.0072 21.4 9.0 73 10-87 19-91 (256)
307 cd00765 Pyrophosphate_PFK Phos 25.7 1.8E+02 0.0039 26.9 5.7 46 65-112 157-204 (550)
308 PRK15469 ghrA bifunctional gly 25.7 2.5E+02 0.0054 23.8 6.3 85 8-99 150-242 (312)
309 PF08242 Methyltransf_12: Meth 25.6 48 0.001 22.2 1.6 31 82-116 3-33 (99)
310 cd06301 PBP1_rhizopine_binding 25.6 3.4E+02 0.0074 21.5 9.6 40 68-110 176-218 (272)
311 cd06270 PBP1_GalS_like Ligand 25.6 3.4E+02 0.0074 21.5 7.4 33 76-110 177-213 (268)
312 smart00046 DAGKc Diacylglycero 25.6 2E+02 0.0044 20.4 5.0 47 67-115 41-89 (124)
313 PLN02251 pyrophosphate-depende 25.1 1.9E+02 0.0042 26.9 5.8 44 66-111 182-227 (568)
314 PRK03692 putative UDP-N-acetyl 25.1 3.8E+02 0.0083 21.9 8.8 67 13-87 101-168 (243)
315 TIGR02477 PFKA_PPi diphosphate 24.8 2E+02 0.0042 26.7 5.7 45 66-112 153-199 (539)
316 TIGR01481 ccpA catabolite cont 24.7 2E+02 0.0043 23.8 5.6 33 76-110 236-272 (329)
317 PRK06181 short chain dehydroge 24.7 3.6E+02 0.0077 21.4 9.2 72 10-87 18-89 (263)
318 PRK05557 fabG 3-ketoacyl-(acyl 24.7 3.3E+02 0.0072 21.1 9.2 73 10-87 22-94 (248)
319 PF09673 TrbC_Ftype: Type-F co 24.6 2.5E+02 0.0055 19.8 5.3 43 1-43 8-51 (113)
320 PF09837 DUF2064: Uncharacteri 24.6 2.7E+02 0.0058 19.9 8.9 70 13-88 30-99 (122)
321 TIGR01744 XPRTase xanthine pho 24.6 2.7E+02 0.0058 21.8 5.9 65 45-113 18-83 (191)
322 PLN02306 hydroxypyruvate reduc 24.4 3.1E+02 0.0067 24.1 6.7 90 14-112 186-299 (386)
323 PRK13656 trans-2-enoyl-CoA red 24.4 4.5E+02 0.0098 23.3 7.7 28 59-87 115-142 (398)
324 COG2390 DeoR Transcriptional r 24.3 4.6E+02 0.0099 22.5 9.7 97 13-114 50-149 (321)
325 COG0206 FtsZ Cell division GTP 24.2 2.1E+02 0.0046 24.7 5.6 55 53-110 73-132 (338)
326 cd06292 PBP1_LacI_like_10 Liga 24.1 2E+02 0.0043 22.9 5.3 32 77-110 182-217 (273)
327 PRK15451 tRNA cmo(5)U34 methyl 24.1 2.1E+02 0.0046 23.0 5.4 36 77-114 58-93 (247)
328 cd01821 Rhamnogalacturan_acety 24.1 3.3E+02 0.0071 20.7 7.1 40 10-50 100-151 (198)
329 PRK12939 short chain dehydroge 24.0 3.5E+02 0.0076 21.1 9.3 72 10-87 24-95 (250)
330 TIGR03206 benzo_BadH 2-hydroxy 24.0 3.5E+02 0.0077 21.1 9.3 71 10-86 20-90 (250)
331 PF00465 Fe-ADH: Iron-containi 23.9 4.4E+02 0.0096 22.6 7.7 95 11-114 16-132 (366)
332 PTZ00357 methyltransferase; Pr 23.9 1.3E+02 0.0028 29.0 4.4 36 79-114 704-739 (1072)
333 PRK06947 glucose-1-dehydrogena 23.7 3.6E+02 0.0078 21.1 9.1 73 10-87 19-91 (248)
334 PRK05855 short chain dehydroge 23.7 5.4E+02 0.012 23.1 9.0 72 10-87 332-403 (582)
335 PF11072 DUF2859: Protein of u 23.7 1E+02 0.0022 23.1 3.1 41 142-184 89-129 (142)
336 COG1609 PurR Transcriptional r 23.6 4.5E+02 0.0097 22.3 7.6 32 77-110 238-273 (333)
337 cd06326 PBP1_STKc_like Type I 23.5 4.2E+02 0.0091 21.8 10.0 39 76-115 191-229 (336)
338 PRK06114 short chain dehydroge 23.5 3.8E+02 0.0082 21.2 9.1 73 10-87 25-97 (254)
339 PF00732 GMC_oxred_N: GMC oxid 23.4 90 0.002 25.6 3.2 35 77-114 1-35 (296)
340 TIGR03820 lys_2_3_AblA lysine- 23.2 3.7E+02 0.0079 24.0 7.0 16 2-17 201-216 (417)
341 TIGR03702 lip_kinase_YegS lipi 23.2 3.9E+02 0.0085 22.1 7.0 75 10-91 20-95 (293)
342 cd06302 PBP1_LsrB_Quorum_Sensi 23.1 4.2E+02 0.0091 21.6 9.4 32 76-109 185-218 (298)
343 cd01541 PBP1_AraR Ligand-bindi 23.1 1.9E+02 0.0042 23.0 5.0 32 76-109 183-218 (273)
344 PRK07201 short chain dehydroge 23.0 6.1E+02 0.013 23.5 9.0 72 10-87 388-459 (657)
345 PRK12823 benD 1,6-dihydroxycyc 23.0 3.8E+02 0.0083 21.2 8.2 70 10-86 25-94 (260)
346 PRK08628 short chain dehydroge 23.0 3.8E+02 0.0083 21.1 8.6 71 10-87 24-94 (258)
347 COG0300 DltE Short-chain dehyd 23.0 4.4E+02 0.0096 21.9 8.9 77 7-88 20-96 (265)
348 PRK08416 7-alpha-hydroxysteroi 22.9 3.9E+02 0.0085 21.2 8.9 73 10-86 25-97 (260)
349 PF01795 Methyltransf_5: MraW 22.9 1.4E+02 0.003 25.5 4.2 52 60-115 3-56 (310)
350 PRK09219 xanthine phosphoribos 22.9 3.1E+02 0.0067 21.4 5.9 65 44-113 17-83 (189)
351 PRK07414 cob(I)yrinic acid a,c 22.7 1.8E+02 0.0038 22.7 4.4 38 77-114 23-60 (178)
352 PF02254 TrkA_N: TrkA-N domain 22.6 2.6E+02 0.0057 19.1 10.2 83 9-110 13-96 (116)
353 cd06277 PBP1_LacI_like_1 Ligan 22.6 2.3E+02 0.0049 22.5 5.3 15 10-24 73-87 (268)
354 PF02593 dTMP_synthase: Thymid 22.5 1E+02 0.0023 24.8 3.2 51 66-118 65-116 (217)
355 cd02191 FtsZ FtsZ is a GTPase 22.5 2.6E+02 0.0057 23.6 5.8 36 75-112 83-123 (303)
356 PRK10423 transcriptional repre 22.4 2.5E+02 0.0053 23.2 5.7 33 76-110 235-271 (327)
357 PRK14103 trans-aconitate 2-met 22.3 2.9E+02 0.0062 22.3 5.9 50 61-114 13-64 (255)
358 COG2263 Predicted RNA methylas 22.3 2.2E+02 0.0048 22.5 4.8 31 80-115 50-80 (198)
359 TIGR00288 conserved hypothetic 22.3 2.3E+02 0.005 21.6 4.8 39 75-114 104-142 (160)
360 TIGR02685 pter_reduc_Leis pter 22.3 4.1E+02 0.0089 21.2 8.3 75 10-86 18-94 (267)
361 COG0061 nadF NAD kinase [Coenz 22.3 1.1E+02 0.0024 25.5 3.5 37 76-114 54-90 (281)
362 cd06278 PBP1_LacI_like_2 Ligan 22.3 3.9E+02 0.0084 20.9 8.0 33 76-110 174-211 (266)
363 cd06304 PBP1_BmpA_like Peripla 22.2 1.9E+02 0.0041 23.0 4.9 31 77-111 180-210 (260)
364 PF12831 FAD_oxidored: FAD dep 22.2 1.2E+02 0.0025 26.9 3.8 33 78-114 1-33 (428)
365 PRK04457 spermidine synthase; 22.0 2.6E+02 0.0056 22.9 5.6 33 78-114 69-101 (262)
366 PF00890 FAD_binding_2: FAD bi 22.0 1E+02 0.0022 26.8 3.4 33 78-114 1-33 (417)
367 PRK05599 hypothetical protein; 21.9 4.1E+02 0.0088 21.0 7.6 67 16-87 22-88 (246)
368 COG0035 Upp Uracil phosphoribo 21.8 1.1E+02 0.0025 24.4 3.2 23 165-187 125-149 (210)
369 PRK06997 enoyl-(acyl carrier p 21.8 4.2E+02 0.0092 21.2 8.2 72 9-87 24-95 (260)
370 cd01714 ETF_beta The electron 21.8 4E+02 0.0086 20.9 9.5 54 59-114 93-150 (202)
371 cd06354 PBP1_BmpA_PnrA_like Pe 21.8 1.8E+02 0.0039 23.4 4.6 30 77-110 184-213 (265)
372 PRK01683 trans-aconitate 2-met 21.8 2.5E+02 0.0054 22.5 5.5 50 61-114 15-66 (258)
373 PRK02090 phosphoadenosine phos 21.7 1.4E+02 0.0031 24.1 3.9 65 156-223 29-95 (241)
374 PRK14987 gluconate operon tran 21.7 4.6E+02 0.01 21.6 8.6 33 76-110 239-275 (331)
375 PRK13054 lipid kinase; Reviewe 21.6 4.7E+02 0.01 21.7 8.6 47 68-115 47-95 (300)
376 TIGR00725 conserved hypothetic 21.6 2.1E+02 0.0046 21.6 4.6 50 61-113 15-64 (159)
377 PRK07454 short chain dehydroge 21.5 4E+02 0.0086 20.8 9.3 72 10-87 23-94 (241)
378 PRK08415 enoyl-(acyl carrier p 21.4 4.5E+02 0.0098 21.4 8.3 73 8-87 22-94 (274)
379 PTZ00010 tubulin beta chain; P 21.4 2E+02 0.0043 25.8 5.1 67 46-112 89-172 (445)
380 cd06275 PBP1_PurR Ligand-bindi 21.4 2.4E+02 0.0052 22.3 5.3 33 76-110 178-214 (269)
381 PRK12480 D-lactate dehydrogena 21.4 4.7E+02 0.01 22.3 7.2 34 63-98 214-249 (330)
382 cd06271 PBP1_AglR_RafR_like Li 21.4 2.5E+02 0.0054 22.1 5.4 33 76-110 181-217 (268)
383 PRK08275 putative oxidoreducta 21.4 1.2E+02 0.0027 27.8 3.9 34 77-112 10-43 (554)
384 cd08170 GlyDH Glycerol dehydro 21.3 4.1E+02 0.009 22.6 6.9 92 11-111 16-109 (351)
385 PRK07208 hypothetical protein; 21.3 3.2E+02 0.007 24.2 6.5 34 76-113 4-37 (479)
386 PRK13660 hypothetical protein; 21.1 2.5E+02 0.0055 21.9 5.0 51 64-114 30-82 (182)
387 PRK15438 erythronate-4-phospha 21.1 2.9E+02 0.0062 24.3 5.9 88 9-99 131-223 (378)
388 PF13847 Methyltransf_31: Meth 21.1 1.4E+02 0.0029 21.9 3.5 33 79-114 7-39 (152)
389 TIGR01305 GMP_reduct_1 guanosi 21.0 3.3E+02 0.0071 23.6 6.0 25 8-32 110-136 (343)
390 cd06321 PBP1_ABC_sugar_binding 21.0 4.2E+02 0.0092 20.9 9.5 32 76-109 181-213 (271)
391 cd06295 PBP1_CelR Ligand bindi 21.0 2.9E+02 0.0063 22.0 5.7 33 76-110 186-222 (275)
392 PRK10624 L-1,2-propanediol oxi 20.8 5.6E+02 0.012 22.2 8.3 14 76-90 87-100 (382)
393 cd06319 PBP1_ABC_sugar_binding 20.8 4.3E+02 0.0093 20.9 9.0 34 75-110 184-219 (277)
394 PRK07024 short chain dehydroge 20.6 4.4E+02 0.0095 20.9 8.4 69 11-86 20-88 (257)
395 TIGR03844 cysteate_syn cysteat 20.6 5.9E+02 0.013 22.4 7.9 83 10-113 312-396 (398)
396 PF11775 CobT_C: Cobalamin bio 20.6 4.6E+02 0.01 21.2 7.2 55 152-209 97-152 (219)
397 cd08191 HHD 6-hydroxyhexanoate 20.6 5.7E+02 0.012 22.2 8.8 74 11-90 16-92 (386)
398 PRK10653 D-ribose transporter 20.5 4.7E+02 0.01 21.2 11.7 40 68-110 200-240 (295)
399 TIGR03587 Pse_Me-ase pseudamin 20.5 4.1E+02 0.0088 20.8 6.3 52 60-115 28-79 (204)
400 TIGR00434 cysH phosophoadenyly 20.5 2.1E+02 0.0046 22.4 4.7 54 167-223 15-68 (212)
401 PRK07576 short chain dehydroge 20.4 4.5E+02 0.0098 21.0 9.5 71 10-86 26-96 (264)
402 cd02201 FtsZ_type1 FtsZ is a G 20.4 1.5E+02 0.0032 25.0 3.9 28 69-97 78-106 (304)
403 PRK13059 putative lipid kinase 20.3 4.4E+02 0.0096 21.9 6.7 70 10-91 25-97 (295)
404 KOG2415 Electron transfer flav 20.3 1.5E+02 0.0032 26.8 3.8 27 147-173 177-203 (621)
405 PRK12824 acetoacetyl-CoA reduc 20.3 4.2E+02 0.0091 20.6 8.7 72 11-87 20-91 (245)
406 COG4221 Short-chain alcohol de 20.2 5E+02 0.011 21.4 7.6 72 6-86 19-91 (246)
407 TIGR01587 cas3_core CRISPR-ass 20.1 1.8E+02 0.0039 24.7 4.4 36 79-114 3-40 (358)
408 PRK06935 2-deoxy-D-gluconate 3 20.1 4.5E+02 0.0097 20.8 8.9 71 10-87 32-102 (258)
409 PLN02541 uracil phosphoribosyl 20.0 1.5E+02 0.0032 24.4 3.6 20 168-187 161-182 (244)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-48 Score=316.68 Aligned_cols=206 Identities=59% Similarity=0.974 Sum_probs=193.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCcc
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVG-FEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVD 78 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d 78 (225)
||+++|++|+++|++|||+|+.++...+ +..+.+++++++++.++ +++++||+||.|+.+||.|++.||++|+++.+|
T Consensus 92 mP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~~~~~g~~d 171 (300)
T COG0031 92 MPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVD 171 (300)
T ss_pred eCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHHHHhCCCCC
Confidence 8999999999999999999999997444 78899999999999888 777789999999999999999999999988899
Q ss_pred EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHH
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIET 158 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a 158 (225)
++|+++|||||++|++++||+.+|+++|++|||+++..+..+. ++|.++||+.+++|..++.+.+|+.+.|+|++++++
T Consensus 172 ~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~-g~~~i~GIG~~~ip~~~~~~~iD~v~~V~d~~A~~~ 250 (300)
T COG0031 172 AFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLSGGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIAT 250 (300)
T ss_pred EEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccCCCC-CCcccCCCCCCcCCcccccccCceEEEECHHHHHHH
Confidence 9999999999999999999999999999999999998887665 889999999999998888899999999999999999
Q ss_pred HHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcC
Q 027277 159 SKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 208 (225)
Q Consensus 159 ~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~ 208 (225)
+|+|+++||+++++|||++++|+++++++. .++++||+|+||+|+||++
T Consensus 251 ~r~La~~eGilvG~SsGA~~~aa~~~a~~~-~~g~~IVti~pD~G~RYls 299 (300)
T COG0031 251 ARRLAREEGLLVGISSGAALAAALKLAKEL-PAGKTIVTILPDSGERYLS 299 (300)
T ss_pred HHHHHHHhCeeecccHHHHHHHHHHHHHhc-CCCCeEEEEECCCcccccC
Confidence 999999999999999999999999999886 3589999999999999997
No 2
>PLN02565 cysteine synthase
Probab=100.00 E-value=2.6e-47 Score=322.52 Aligned_cols=224 Identities=75% Similarity=1.188 Sum_probs=203.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++||.|||+|+.+++..+++++.+.+++++++.+++|+++||+|+.|+..||+|+|+||++|+++.||+|
T Consensus 97 vp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei~~q~~~~~d~v 176 (322)
T PLN02565 97 MPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEIWKGTGGKVDAF 176 (322)
T ss_pred eCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 79999999999999999999999865456788899999988765789999999998878899999999999997679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|+||+++|++++||+++|++|||+|||++++++..+++.++.+++++.+..+..+..+.+++.+.|+|+|++++++
T Consensus 177 v~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~~g~~~~~~~~glg~~~~~~~~~~~~vd~~v~V~d~ea~~a~~ 256 (322)
T PLN02565 177 VSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGGKPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAK 256 (322)
T ss_pred EEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCCcCCHhHCCEEEEECHHHHHHHHH
Confidence 99999999999999999999999999999999998887777777888999887666666677899999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCCC
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPI 224 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~~ 224 (225)
.|++++|+++||+||++++++++++++...++++||+++|++|.||+++++|+++..+..|+..
T Consensus 257 ~l~~~~gi~vg~ssga~laaa~~~a~~~~~~~~~vV~v~~d~G~ky~~~~~~~~~~~~~~~~~~ 320 (322)
T PLN02565 257 LLALKEGLLVGISSGAAAAAAIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENMVF 320 (322)
T ss_pred HHHHHhCcEEeccHHHHHHHHHHHHHhcCCCCCeEEEEECCCccccCCchhhHHHHHHHhcCcc
Confidence 9999999999999999999999999765445789999999999999999999988888888753
No 3
>PLN00011 cysteine synthase
Probab=100.00 E-value=2.1e-45 Score=311.65 Aligned_cols=225 Identities=74% Similarity=1.158 Sum_probs=200.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.|||+|+.++.....+++++.+++++++.+++++++||+|+.++..||.+++.||++|+.++||+|
T Consensus 99 vp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t~~~EI~~q~~~~~D~i 178 (323)
T PLN00011 99 MPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRTTGPEIWRDSAGKVDIL 178 (323)
T ss_pred eCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHHHHHHHHHhcCCCCCEE
Confidence 79999999999999999999999864344566778888888766789999999998877799999999999996679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|+|||++|++++||+++|++|||||||++++++..+++..+.++|++.+..+..+....+++.+.|+|+|++++++
T Consensus 179 v~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~ 258 (323)
T PLN00011 179 VAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGGQPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAK 258 (323)
T ss_pred EEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCcccChhhCCeEEEECHHHHHHHHH
Confidence 99999999999999999999999999999999998887667777777888876666666677889999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCCCC
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
+|++++|+++||+||++++++++++++...+++++|++++|+|+||+|+.+|+.+..+++|+++.
T Consensus 259 ~l~~~~Gi~~~~ssga~laaa~~~~~~~~~~~~~vv~i~~d~G~ky~~~~~~~~~~~~~~~~~~~ 323 (323)
T PLN00011 259 LLALKEGLLVGISSGAAAAAALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323 (323)
T ss_pred HHHHhcCCeEcccHHHHHHHHHHHHHhccCCCCeEEEEECCCccccCChhhhHHHHHhhhcCCCC
Confidence 99999999999999999999999887644457899999999999999999999877777999874
No 4
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=1.2e-45 Score=316.86 Aligned_cols=225 Identities=58% Similarity=0.998 Sum_probs=201.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++||+|||+|+.+++..++..+++.++++++++++++|++||+||.++.+||.+++.||++|+.+.||+|
T Consensus 141 vp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~EI~eq~~~~~D~v 220 (368)
T PLN02556 141 MPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTLGQVDIF 220 (368)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 79999999999999999999999864445577888888888777889999999999955799999999999986689999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|||||++|++++||+.+|++|||||||.+++.+..+++.++.+.|++.+..+..+..+++++.+.|+|+|++++++
T Consensus 221 V~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~~~g~~~~~~i~g~g~~~~p~~~~~~~~d~~v~Vsd~ea~~a~r 300 (368)
T PLN02556 221 VMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGGKPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMAR 300 (368)
T ss_pred EEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccccCCCCCCeeeeeccCCCCccccchhhCCeEEEECHHHHHHHHH
Confidence 99999999999999999999999999999999998777666677777788777666667788899999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCCCC
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
.|++++|+++||+||++++|+++++++...++++||+|+|++|.||+++++|++|..+...+.|+
T Consensus 301 ~l~~~eGi~vg~ssgA~~~aal~~a~~~~~~~~~IV~v~~d~g~kY~~~~~~~~~~~~~~~~~~~ 365 (368)
T PLN02556 301 ELALKEGLMVGISSGANTVAALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPV 365 (368)
T ss_pred HHHHHcCCEEecCHHHHHHHHHHHhhhccCCcCEEEEEECCCCcccCChhhhHHHHHHHHhcCCc
Confidence 99999999999999999999999887654457899999999999999999999999999988774
No 5
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.8e-44 Score=310.42 Aligned_cols=209 Identities=67% Similarity=1.101 Sum_probs=189.5
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|+.+++..+++++++.+++++++.+++||++||+||.++.+||.|+|.||++|++++||+|
T Consensus 205 vP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~EI~eq~~~~~D~v 284 (429)
T PLN03013 205 MPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIF 284 (429)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 79999999999999999999999875556788899999988866789999999999966799999999999997789999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|+|||++|++++||+.+|+++||+|||++++.+..+++.++.++|++.+.+|..++.+++|+.+.|+|+|++++++
T Consensus 285 V~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l~~g~~~~~~i~Glg~~~ip~~~~~~~vD~vv~VsD~ea~~a~r 364 (429)
T PLN03013 285 VAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGGKPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAK 364 (429)
T ss_pred EEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchhhCCCCCCcccCcccCCcCCHhHHHHhccEEEEECHHHHHHHHH
Confidence 99999999999999999999999999999999998887677777888999988778888888999999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEE-EEEecCCCCCCcCh
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI-VVIFPSAGERYLST 209 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~v-v~v~~~gG~~~~~~ 209 (225)
+|++++|+++||+||++++|+++++++...+++++ |++++++|++|.++
T Consensus 365 ~La~~eGi~vG~SSGAalaAalkla~~~~~~g~~IVv~i~~d~g~~Y~~~ 414 (429)
T PLN03013 365 QLALKEGLMVGISSGAAAAAAIKVAKRPENAGKLIAVSLFASGRDIYTPR 414 (429)
T ss_pred HHHHHcCCEEecCHHHHHHHHHHHhhhccCCCCEEEEEEcCCCchhchhh
Confidence 99999999999999999999999987654456665 67777899999998
No 6
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=9.2e-44 Score=299.08 Aligned_cols=212 Identities=62% Similarity=1.026 Sum_probs=189.4
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++||.+||+|+.+++..+++++.+.+++++++.+++++++||+|+.+++.||+++++||++|+++.||+|
T Consensus 88 vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~~~~d~i 167 (299)
T TIGR01136 88 MPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTDGRIDHF 167 (299)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcCCCCCEE
Confidence 79999999999999999999999975446888999999988765688999999998878999999999999997679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|+||+++|++.+||++++.+||++|||++++++...++..+.+.+++.+..++.+.++++++.+.|+|+|++++++
T Consensus 168 v~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~d~~~~V~d~e~~~a~~ 247 (299)
T TIGR01136 168 VAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETAR 247 (299)
T ss_pred EEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCCCCCCccCCCCCCCCCCccCChhhCCEEEEECHHHHHHHHH
Confidence 99999999999999999999999999999999998887655555566777766667777788899999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhc
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~ 212 (225)
.|++++|+++||+||+++++++++.++...++++||+++|++|.||++++.|
T Consensus 248 ~l~~~~gi~~e~ssaa~~a~~~~~~~~~~~~~~~vv~i~~d~g~ky~~~~~~ 299 (299)
T TIGR01136 248 RLAREEGILVGISSGAAVAAALKLAKRLENADKVIVAILPDTGERYLSTGLF 299 (299)
T ss_pred HHHHHhCceEcchHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccCcccC
Confidence 9999999999999999999999988764445889999999999999998544
No 7
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=5.4e-43 Score=294.32 Aligned_cols=211 Identities=65% Similarity=1.028 Sum_probs=186.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~ 79 (225)
||+++++.|+++|+.+||+|+.+++..++.++.+.++++++++++ +++++||+||.++++||+|+++||++|+++.||+
T Consensus 87 vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~d~ 166 (298)
T TIGR01139 87 MPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDTDGKLDA 166 (298)
T ss_pred eCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHhCCCCCE
Confidence 799999999999999999999999643346778889998888743 6689999999987899999999999999767999
Q ss_pred EEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHH
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETS 159 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~ 159 (225)
||+|+|+|||++|++.+||++++++|||+|||.+++++...+..++.+++++.+..+..+..+.+++.+.|+|+|+++++
T Consensus 167 vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~~~V~d~e~~~a~ 246 (298)
T TIGR01139 167 FVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETA 246 (298)
T ss_pred EEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCCCCCCCCCCCCCCCCCCCccChhhCCEEEEECHHHHHHHH
Confidence 99999999999999999999999999999999999877665666677788877666666777788999999999999999
Q ss_pred HHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhc
Q 027277 160 KLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212 (225)
Q Consensus 160 ~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~ 212 (225)
++|++++|+++||+||+++++++++.++. .++++||+++|++|.||+++..|
T Consensus 247 ~~l~~~~gi~~~pssga~laa~~~~~~~~-~~~~~vv~v~~d~G~ky~~~~~~ 298 (298)
T TIGR01139 247 RRLAAEEGILVGISSGAAVAAALKLAKRP-EPDKLIVVILPSTGERYLSTPLF 298 (298)
T ss_pred HHHHHhcCceEcccHHHHHHHHHHHHHhc-CCCCEEEEEECCCCccccCcccC
Confidence 99999999999999999999999988764 36789999999999999997543
No 8
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=6.8e-43 Score=297.49 Aligned_cols=221 Identities=43% Similarity=0.685 Sum_probs=185.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCC------ChHHHHHHHHHHHHhC-CCeEEeCCCCCCCChHhhHhhhHHHHHHhh
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAV------GFEGFVKKGEEILNRT-PNGYILGQFENPANPEIHYETTGPEIWNDS 73 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql 73 (225)
||+++++.|+++|+.|||+|+.+++.. ..+.+.+.++++.++. .+++|++||+||.++.+||.|+++||++|+
T Consensus 94 ~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~~ql 173 (330)
T PRK10717 94 MPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYETTGPEIWEQT 173 (330)
T ss_pred eCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHHhHHHHHHHhc
Confidence 799999999999999999999998531 1223344455554443 268999999999986789999999999999
Q ss_pred CCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc---CCC---CccccccccCCCCCcccccccCcCeE
Q 027277 74 GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ---PGKHLIQGIGAGVIPPVLDVAMLDEV 147 (225)
Q Consensus 74 ~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~---~~~---~~~~~~~gl~~~~~~~~~~~~~~~~~ 147 (225)
+..||+||+|+|+||+++|++++||++++++||++|||++++.+. .++ ...+.+++++.+..+..+....+++.
T Consensus 174 ~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~~~~~~~~~g~~~~~~~~~~~gl~~~~~~~~~~~~~~d~~ 253 (330)
T PRK10717 174 DGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGSALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDA 253 (330)
T ss_pred CCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCCccccccccCCcCCCCCcccCcCCCCcCCcccChhhCCEE
Confidence 767999999999999999999999999999999999999985432 122 23466788887766666666678999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 148 ~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
+.|+|+|++++++.|++++|+++|||||++++++++++++. .++++||+++|++|+||+++ +|+|.|...+|+.
T Consensus 254 v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l~~~~-~~~~~Vv~v~~g~g~ky~~~-~~~d~~~~~~~~~ 327 (330)
T PRK10717 254 IRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRLAREL-GPGHTIVTILCDSGERYQSK-LFNPDFLREKGLP 327 (330)
T ss_pred EEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHHHHhc-CCCCEEEEEECCCchhhccc-ccCHHHHHhcCCC
Confidence 99999999999999999999999999999999999988764 46789999999999999998 6788888888764
No 9
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=4.2e-43 Score=302.93 Aligned_cols=222 Identities=38% Similarity=0.604 Sum_probs=185.5
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCC-----CCh-HHHH---HHHHHHHHh-----------------------------
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPA-----VGF-EGFV---KKGEEILNR----------------------------- 42 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~-----~~~-~~~~---~~a~~~~~~----------------------------- 42 (225)
||+++|+.|+++||.|||+|+.+++. .++ ..+. +.+.+++++
T Consensus 134 vP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (423)
T PLN02356 134 IPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCISEEEKENSLF 213 (423)
T ss_pred ECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 79999999999999999999999641 122 1111 223444332
Q ss_pred ---CCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc-
Q 027277 43 ---TPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN- 118 (225)
Q Consensus 43 ---~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~- 118 (225)
.++++|++||+|+.++..|+.++|+||++|++++||+||+|+|||||++|++++||+++|++||++|||.++..+.
T Consensus 214 ~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep~~s~~~~~ 293 (423)
T PLN02356 214 SSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDPPGSGLFNK 293 (423)
T ss_pred ccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEecCCCccccc
Confidence 1467899999999987776666799999999768999999999999999999999999999999999999876332
Q ss_pred ------------CCC----CccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHH
Q 027277 119 ------------GGQ----PGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAI 182 (225)
Q Consensus 119 ------------~~~----~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~ 182 (225)
.++ +.++.++|++.+..+..+....+|+.+.|+|+|+++++++|++++|+++|||||++++|++
T Consensus 294 ~~~~~~~~~s~~~G~~~~~~~~tia~Gig~~~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~vg~Ssaa~laaa~ 373 (423)
T PLN02356 294 VTRGVMYTREEAEGRRLKNPFDTITEGIGINRLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAV 373 (423)
T ss_pred cccchhhhhhhhcCCccCCCCCeecCcCcCCCCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCeeEeECHHHHHHHHH
Confidence 122 2256789998887777777888999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCCC
Q 027277 183 RVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPI 224 (225)
Q Consensus 183 ~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~~ 224 (225)
+++++. .++++||+|+|++|.||+++ +|++.|...+|+.|
T Consensus 374 ~la~~~-~~g~~VV~Il~d~G~kyl~~-~~~~~w~~~~~~~~ 413 (423)
T PLN02356 374 RVAQSL-GPGHTIVTILCDSGMRHLSK-FHDPQYLSQHGLTP 413 (423)
T ss_pred HHHHHh-CCCCeEEEEECCCCcchhhh-hcCHHHHHhcCCCC
Confidence 988653 35789999999999999999 78899999999875
No 10
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-44 Score=294.06 Aligned_cols=222 Identities=65% Similarity=1.064 Sum_probs=204.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCc
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKV 77 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~ 77 (225)
||++++.+|+..|++|||+|+++++...+.. +...+.++..+.++.+.++||.||.|+..||.+++.||+.|+.+++
T Consensus 134 mP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~ttg~EI~~q~~g~v 213 (362)
T KOG1252|consen 134 MPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETTGPEIWRQLDGKV 213 (362)
T ss_pred echhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccccHHHHHHhcCCC
Confidence 8999999999999999999999998655555 8889999999999999999999999999999999999999998899
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCcc--ccccccCCCCCcccccccCcCeEEEeCHHHH
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGK--HLIQGIGAGVIPPVLDVAMLDEVITVSSEEA 155 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~--~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~ 155 (225)
|.+|.++|||||++|+.+++|+.+++++|++|+|..+..+....+++ +.+.|++.++.|..++...+++.+.+.++|+
T Consensus 214 Di~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~~~d~A 293 (362)
T KOG1252|consen 214 DIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKVSSDEA 293 (362)
T ss_pred CEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHhCCHHH
Confidence 99999999999999999999999999999999999998877666676 8899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCC
Q 027277 156 IETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 222 (225)
Q Consensus 156 ~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~ 222 (225)
+.+.|+|+++||++++.|||++++|+++++++.+..++-+|++++++|.+|++++||++|..++.++
T Consensus 294 ~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~en~~kliV~~~pd~ge~Y~st~L~d~w~~e~~~~ 360 (362)
T KOG1252|consen 294 IEMARRLALEEGLLVGISSGANVAAALKLAKRPENAGKLIVVTFPDFGERYLSTFLFDEWREEAEKL 360 (362)
T ss_pred HHHHHHHHHhhCeeecccchHHHHHHHHHHhccccCCcEEEEECCCcchhhhhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999998876445444444499999999999999998887765
No 11
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-43 Score=292.50 Aligned_cols=203 Identities=24% Similarity=0.321 Sum_probs=183.3
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||.++|+.|++.+|.|||||++++ .+|+++.+.++++++++ |+.|++||++|+. ++||+|++.||++|++..||+|
T Consensus 104 MP~~tp~~Kv~a~r~~GaeVil~g--~~~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~lEileq~~~~~d~v 179 (347)
T COG1171 104 MPETTPKIKVDATRGYGAEVILHG--DNFDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIALEILEQLPDLPDAV 179 (347)
T ss_pred ecCCCcHHHHHHHHhcCCEEEEEC--CCHHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHHHHHHHhccccCCEE
Confidence 899999999999999999999999 57899999999999998 8999999999998 9999999999999996557999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CC-CC-----ccccccccCCC---CCcccccccCcCeE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GG-QP-----GKHLIQGIGAG---VIPPVLDVAMLDEV 147 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~-~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~ 147 (225)
|||+|+||+++|++.++|.+.|++|||||||++++++. .| .+ ..+.++|++.. ..+|.+.++++|+.
T Consensus 180 ~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~~~g~~tf~i~~~~vd~~ 259 (347)
T COG1171 180 FVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDI 259 (347)
T ss_pred EEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccCCCCHHHHHHHHHcCCcE
Confidence 99999999999999999999999999999999999875 34 21 23556888753 44778889999999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 148 ~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+.|+|+|+.++|+.+++++++++||+++++++|+++...+. .+++++++++ ||||.++.+
T Consensus 260 v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~~~~~-~~g~~v~~il-SGgN~d~~~ 319 (347)
T COG1171 260 VLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAGKIEP-LQGKTVVVIL-SGGNIDFER 319 (347)
T ss_pred EEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhhhhhh-cCCCeEEEEe-cCCCCCHHH
Confidence 99999999999999999999999999999999999987664 4677788888 999999886
No 12
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=1.1e-41 Score=285.66 Aligned_cols=203 Identities=42% Similarity=0.743 Sum_probs=175.7
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|+.++...+++++.+.+++++++. +++|++||+|+.++..||+|+++||++|+++.+|+|
T Consensus 93 ~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~Ei~eq~~~~~d~i 171 (296)
T PRK11761 93 MPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGPEIWRQTEGRITHF 171 (296)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHHHHHHhcCCCCCEE
Confidence 7999999999999999999999996446788888888888876 789999999999877899999999999997679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|+|||++|++++||+++|++||++|||.+++.+.. +.+......+..++...+|+.+.|+|+|++++++
T Consensus 172 v~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~g-------~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~~a~~ 244 (296)
T PRK11761 172 VSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIPG-------IRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMR 244 (296)
T ss_pred EecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCcC-------CCCCCCCcCCcccChhhCCEEEEECHHHHHHHHH
Confidence 999999999999999999999999999999998866531 1111112223334467789999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhch
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~ 213 (225)
+|++++|+++||+||+++++++++.++ .++++||+|+|++|.||+++.+|+
T Consensus 245 ~l~~~~gi~ve~ssga~laaa~~~~~~--~~~~~vV~v~~d~g~ky~~~~~~~ 295 (296)
T PRK11761 245 RLAREEGIFCGVSSGGAVAAALRIARE--NPNAVIVAIICDRGDRYLSTGVFP 295 (296)
T ss_pred HHHHHhCceEchhHHHHHHHHHHHHHH--CCCCeEEEEECCCCcccCChhccc
Confidence 999999999999999999999998765 357899999999999999986664
No 13
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=2.5e-41 Score=283.42 Aligned_cols=206 Identities=57% Similarity=0.917 Sum_probs=181.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhH-hhhHHHHHHhhCCCc
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHY-ETTGPEIWNDSGGKV 77 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~-~t~~~Ei~~Ql~~~~ 77 (225)
||+++++.|+++|+.+||+|+.++... +++++.+.++++++++++++|++||+||.+ +.|+ +|+++||++|++..|
T Consensus 83 vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~g~~~t~~~Ei~~ql~~~~ 161 (291)
T cd01561 83 MPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPAN-PEAHYETTAPEIWEQLDGKV 161 (291)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchH-HHHHHHHHHHHHHHHcCCCC
Confidence 689999999999999999999999642 237888889988887657999999999998 5555 599999999997679
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHH
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIE 157 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~ 157 (225)
|+||+|+|+|||++|++.+|+++++.++||+|||++++++.......+.+++++.+..+..+...++++.+.|+|+|+++
T Consensus 162 d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~V~d~e~~~ 241 (291)
T cd01561 162 DAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFA 241 (291)
T ss_pred CEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCcccCCCCCCCCcCCCCCCCCCCCccCchhCceeEEECHHHHHH
Confidence 99999999999999999999999999999999999998874444456677888877666667777899999999999999
Q ss_pred HHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcC
Q 027277 158 TSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 208 (225)
Q Consensus 158 a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~ 208 (225)
+++.|++++|+++||+||++++++++++++.. +++++|+++|++|.||+|
T Consensus 242 a~~~l~~~~gi~~epssa~a~a~~~~~~~~~~-~~~~vv~v~~~~g~ky~~ 291 (291)
T cd01561 242 MARRLAREEGLLVGGSSGAAVAAALKLAKRLG-PGKTIVTILPDSGERYLS 291 (291)
T ss_pred HHHHHHHHhCeeEcccHHHHHHHHHHHHHhcC-CCCeEEEEECCCccccCC
Confidence 99999999999999999999999999887653 678999999999999986
No 14
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2.9e-41 Score=299.04 Aligned_cols=221 Identities=36% Similarity=0.620 Sum_probs=185.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCc
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFE---GFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKV 77 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~ 77 (225)
||+++|+.|+++|+.|||+|+.+++...++ .+.+.+.+++++.++.+|++||+|+.++.+||.|+|+||++|+++.|
T Consensus 92 ~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~ 171 (454)
T TIGR01137 92 LPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKL 171 (454)
T ss_pred eCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHHHHHHhCCCC
Confidence 799999999999999999999998532233 23566777777744678899999999877899999999999997679
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC------CccccccccCCCCCcccccccCcCeEEEeC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ------PGKHLIQGIGAGVIPPVLDVAMLDEVITVS 151 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~------~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~ 151 (225)
|+||+|+|||||++|++.+||+.+|++||+||||+++... .+. ..++.++|++.+..+..+..+++|+.+.|+
T Consensus 172 d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~~V~ 250 (454)
T TIGR01137 172 DMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA-QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTD 250 (454)
T ss_pred CEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCccc-CCCcccCCCCCCccCCCCCCCCCCCcCCchhCCeEEEEC
Confidence 9999999999999999999999999999999999988633 221 123456777766556666778899999999
Q ss_pred HHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 152 SEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 152 d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
|+|++++++.|++++|+++||+||++++|+++++++...+++++|+++|++|.||+++ +|++.|...+|+.
T Consensus 251 ~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~~~~~~~~~~~vv~~~~d~g~~y~~~-~~~~~w~~~~~~~ 321 (454)
T TIGR01137 251 DKESFKMARRLIKEEGLLVGGSSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMTK-FLNDEWMKDNGFL 321 (454)
T ss_pred HHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHHHHhhcCCCCEEEEEECCCCccccCc-ccChHHHHhcCCc
Confidence 9999999999999999999999999999999988742245789999999999999999 5666777777664
No 15
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=5.7e-41 Score=280.60 Aligned_cols=202 Identities=41% Similarity=0.763 Sum_probs=173.9
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.|||+|+.+++..+++++.+.+++++++. +.+|++||+|+.++..||.|+++||++|+++.||+|
T Consensus 89 ~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~~~~d~i 167 (290)
T TIGR01138 89 MPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRG-EGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHF 167 (290)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCCCCCccCCcccHHHHhHhHHHHHHHHcCCCCCEE
Confidence 7999999999999999999999986445788888999998887 446889999999977789999999999997679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHHH
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~ 160 (225)
|+|+|+|||++|++.+||+++|++|||+|||.+++.+.. +.+++.+..+..+....+|+.+.|+|+|++++++
T Consensus 168 v~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~g-------~~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~ 240 (290)
T TIGR01138 168 VSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG-------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMR 240 (290)
T ss_pred EECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccC-------CCCCCCCcCCcccChhhCcEEEEECHHHHHHHHH
Confidence 999999999999999999999999999999999866531 1222222233334466789999999999999999
Q ss_pred HHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhc
Q 027277 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212 (225)
Q Consensus 161 ~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~ 212 (225)
+|++++|+++||+||++++++++++++ .+++++|+|+|++|.||+++.+|
T Consensus 241 ~l~~~~gi~~g~ssga~laa~~~~~~~--~~~~~vv~v~~d~g~ky~~~~~~ 290 (290)
T TIGR01138 241 ELAVREGIFCGVSSGGAVAAALRLARE--LPDAVVVAIICDRGDRYLSTGVF 290 (290)
T ss_pred HHHHHhCceEcHhHHHHHHHHHHHHHH--CCCCeEEEEECCCCccccCcccC
Confidence 999999999999999999999998776 35689999999999999997443
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=5.8e-41 Score=297.62 Aligned_cols=204 Identities=25% Similarity=0.314 Sum_probs=179.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|++.+|.|||+|+.++ ++++++.+.+.++++++ +++|++||+||.+ ++||+|+|+||++|+++.||+|
T Consensus 115 mP~~tp~~Kv~~~r~~GAeVil~g--~~~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~eQ~~~~~D~V 190 (521)
T PRK12483 115 MPRTTPQLKVDGVRAHGGEVVLHG--ESFPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILRQHPGPLDAI 190 (521)
T ss_pred ECCCCCHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHHHhCCCCCEE
Confidence 799999999999999999999998 46899999999999887 7899999999998 8999999999999996569999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCC---CcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++.++|.++|++|||||||++++++. .+++ ..+.++|++... .++.+.++++|+.+
T Consensus 191 vvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~vv 270 (521)
T PRK12483 191 FVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVV 270 (521)
T ss_pred EEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999998764 2322 224457776433 23455678999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.|++++|+++||+||+++||++++.++...+++++|+|+ ||||.++++
T Consensus 271 ~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~~~~~~~~g~~VV~Il-sGgNid~~~ 330 (521)
T PRK12483 271 TVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKYAEREGIEGQTLVAID-SGANVNFDR 330 (521)
T ss_pred EECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHHHHhcCCCCCEEEEEe-CCCCCCHHH
Confidence 999999999999999999999999999999999998766545678888888 999998886
No 17
>PLN02550 threonine dehydratase
Probab=100.00 E-value=1.1e-40 Score=297.65 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=179.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|..|++.+|.|||+|++++ .+++++.+.+++++++. +++|++||+||.+ ++||+|+|.||++|+++.+|+|
T Consensus 187 mP~~tp~~Kv~~~r~~GAeVvl~g--~~~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~eQl~~~~D~V 262 (591)
T PLN02550 187 MPVTTPEIKWQSVERLGATVVLVG--DSYDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVRQHQGPLHAI 262 (591)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeC--CCHHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHHHcCCCCCEE
Confidence 799999999999999999999998 46899999999999886 7899999999998 8999999999999996569999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCc-----cccccccCCCC---CcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGV---IPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++.++|+++|++|||||||++++++. .+++. .+.++|+.... .++.+.++++|+++
T Consensus 263 vvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~vV 342 (591)
T PLN02550 263 FVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVV 342 (591)
T ss_pred EEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEEE
Confidence 99999999999999999999999999999999998774 33321 24456766433 23445678999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.+++++|+++||+||+++||++++.++...++++||+++ ||||.++++
T Consensus 343 ~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~~~~~~~~g~~Vv~vl-sGgNid~~~ 402 (591)
T PLN02550 343 LVSRDAICASIKDMFEEKRSILEPAGALALAGAEAYCKYYGLKDENVVAIT-SGANMNFDR 402 (591)
T ss_pred EECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHHHHhcCCCCCeEEEEe-cCCCCCHHH
Confidence 999999999999999999999999999999999998765546788888888 999998886
No 18
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=2.8e-40 Score=293.24 Aligned_cols=204 Identities=24% Similarity=0.328 Sum_probs=179.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|++.++.|||+|+.++ .+++++.+.+++++++. +++|++||+||.+ ++||+|+|.||++|++.+||+|
T Consensus 95 mP~~tp~~Kv~~~r~~GA~Vvl~g--~~~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~~q~~~~~D~v 170 (499)
T TIGR01124 95 MPETTPDIKVDAVRGFGGEVVLHG--ANFDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEILRQVANPLDAV 170 (499)
T ss_pred ECCCCCHHHHHHHHhCCCEEEEeC--cCHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHHHhCCCCCCEE
Confidence 799999999999999999999998 46899999999999886 7899999999998 8999999999999996679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCCC---cccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~ 148 (225)
|+|+|||||++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++...+ ++.+.++++|+++
T Consensus 171 vvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~vv 250 (499)
T TIGR01124 171 FVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIV 250 (499)
T ss_pred EEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999998764 2332 1234567764432 4456678999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.+++++|+++||+||++++|+++++++...+++++|+|+ ||||.++++
T Consensus 251 ~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~~~~~~~~~~~vv~i~-sG~n~~~~~ 310 (499)
T TIGR01124 251 TVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKYVALHGIRGQTLVAIL-SGANMNFHR 310 (499)
T ss_pred EECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHHH
Confidence 999999999999999999999999999999999998876545678888888 999998886
No 19
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=9.1e-40 Score=283.73 Aligned_cols=202 Identities=22% Similarity=0.298 Sum_probs=173.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|++.+|.|||+|++++ .+++++.+.+++++++. +++|++||+|+.+ ++||+|++.||++|++ .||+|
T Consensus 98 mP~~~p~~k~~~~r~~GA~Vv~~g--~~~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gtia~EI~eq~~-~~D~v 172 (403)
T PRK08526 98 MPEATPLLKVSGTKALGAEVILKG--DNYDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTIALEMLDEIS-DLDMV 172 (403)
T ss_pred EcCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHHHHHHHHhcC-CCCEE
Confidence 799999999999999999999998 46899999999998886 7899999999987 9999999999999994 79999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCCC---cccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~~~~ 148 (225)
|+|+|+||+++|++.+||+++|++|||||||++++++. .+++ ..+.++|++.... ++.+.++++|+.+
T Consensus 173 vvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~~~~~~~~vd~~v 252 (403)
T PRK08526 173 VVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAIILECVDDFV 252 (403)
T ss_pred EEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999998763 2332 2345577765421 2233457899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.|++++|+++||++|++++++++..... .++++||+++ ||||.++++
T Consensus 253 ~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~~~~~-~~~~~Vv~il-sGGnid~~~ 311 (403)
T PRK08526 253 QVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKIDL-KKGKKIGVVL-SGGNIDVQM 311 (403)
T ss_pred EECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhCcccc-ccCCeEEEEE-CCCCCCHHH
Confidence 9999999999999999999999999999999998633221 3577888888 999998885
No 20
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=1.7e-39 Score=289.27 Aligned_cols=204 Identities=25% Similarity=0.327 Sum_probs=177.9
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|++.++.|||+|++++ .+++++.+.+.+++++. +++|++||+||.+ ++||+|++.||++|+++.||+|
T Consensus 98 mP~~tp~~K~~~~r~~GA~Vi~~g--~~~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~~q~~~~~D~v 173 (504)
T PRK09224 98 MPVTTPDIKVDAVRAFGGEVVLHG--DSFDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEILQQHPHPLDAV 173 (504)
T ss_pred ECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHHHhccCCCCEE
Confidence 799999999999999999999998 46899999999998886 7899999999998 8999999999999996559999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCc-----cccccccCCCCC---cccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGVI---PPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~ 148 (225)
|+|+|||||++|++.++|.++|++|||||||++++++. .+++. .+.++|++...+ ++.+.++++|+++
T Consensus 174 vvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~~v 253 (504)
T PRK09224 174 FVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVI 253 (504)
T ss_pred EEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCeEE
Confidence 99999999999999999999999999999999998764 23321 233466654332 3445578999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.|++++|+++||+||+++||++++.++...+++++|+|+ ||||.++++
T Consensus 254 ~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~~~~~~~~g~~vv~i~-sG~n~~~~~ 313 (504)
T PRK09224 254 TVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAIL-SGANMNFDR 313 (504)
T ss_pred EECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHhhhhcCCCCCeEEEEE-CCCCCCHHH
Confidence 999999999999999999999999999999999998876545678888888 899988886
No 21
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=1.5e-39 Score=281.98 Aligned_cols=201 Identities=25% Similarity=0.340 Sum_probs=173.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|++++|.|||+|++++ .+++++.+.+++++++. +++|++||+|+.+ ++||+|++.||++|++ .||+|
T Consensus 78 ~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~v 152 (380)
T TIGR01127 78 MPESAPPSKVKATKSYGAEVILHG--DDYDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDTV 152 (380)
T ss_pred EcCCCcHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCEE
Confidence 799999999999999999999998 46899999999998886 7899999999998 8999999999999994 79999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCc-----cccccccCCCC---CcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGV---IPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gl~~~~---~~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++.+||+++|++|||||||++++++. .+++. .+.++|++... .++.+.++++|+.+
T Consensus 153 v~~vG~Gg~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v 232 (380)
T TIGR01127 153 IVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVV 232 (380)
T ss_pred EEEeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999998763 23322 34456766432 23345578899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.+++++|++++|+++||++|++++++++.... .++++||+++ ||||.+.+.
T Consensus 233 ~V~d~e~~~a~~~l~~~~gi~~e~s~a~~laa~~~~~~~--~~~~~vv~i~-sGGn~d~d~ 290 (380)
T TIGR01127 233 TVDEEEIANAIYLLLERHKILAEGAGAAGVAALLEQKVD--VKGKKIAVVL-SGGNIDLNL 290 (380)
T ss_pred EECHHHHHHHHHHHHHhcCeEechHHHHHHHHHHhCccc--cCCCeEEEEe-CCCCCCHHH
Confidence 999999999999999999999999999999999875322 4578899888 789988774
No 22
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=4.2e-39 Score=273.67 Aligned_cols=207 Identities=26% Similarity=0.330 Sum_probs=171.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++||.|||+|+.++ .+++++.+.+++++++. +++|++||+||.+ .+||+|+++||++|+ ++||+|
T Consensus 105 ~p~~~~~~k~~~~~~~GA~V~~~~--~~~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a~Ei~~q~-~~~d~v 179 (333)
T PRK08638 105 MPKGAPKSKVAATCGYGAEVVLHG--DNFNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIGLEILEDL-WDVDTV 179 (333)
T ss_pred eCCCCcHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHHHHHHhhc-CCCCEE
Confidence 799999999999999999999998 46788999999998887 7899999999998 899999999999999 579999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCcc-----ccccccCCCCCccc----ccccCcCeE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPGK-----HLIQGIGAGVIPPV----LDVAMLDEV 147 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~~-----~~~~gl~~~~~~~~----~~~~~~~~~ 147 (225)
|+|+|+||+++|++.+||+.+|++|||+|||++++++. .+++.. +..+++.... |.. +.++++|+.
T Consensus 180 v~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~-p~~~~~~~~~~~~d~~ 258 (333)
T PRK08638 180 IVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSR-PGNLTYEIVRELVDDI 258 (333)
T ss_pred EEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCC-ccHHHHHHHHHhCCeE
Confidence 99999999999999999999999999999999987543 333322 2234443322 222 235789999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHH
Q 027277 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIR 216 (225)
Q Consensus 148 ~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~ 216 (225)
+.|+|+|+++++++|++++|+++||++|++++++.....+...+++++|+|+ ||||+++++ |.+++
T Consensus 259 v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~~~~~~~~~~~vv~v~-~Ggn~~~~~--~~~~~ 324 (333)
T PRK08638 259 VLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSGKLDQYIQNKKVVAII-SGGNVDLSR--VSQIT 324 (333)
T ss_pred EEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhCCcccccCCCcEEEEE-CCCCCCHHH--HHHHH
Confidence 9999999999999999999999999988888887653322223577899999 799999996 55555
No 23
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=5.2e-39 Score=280.02 Aligned_cols=202 Identities=22% Similarity=0.319 Sum_probs=173.9
Q ss_pred CCCCChHHHHHHHHHcCCEE---EEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCc
Q 027277 1 MPSTYSIERRIILRALGAEV---YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKV 77 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~ 77 (225)
||+++|+.|+++++.|||+| +.++ .+++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+++.|
T Consensus 94 ~p~~~~~~k~~~~~~~GA~vv~v~~~g--~~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ti~~Ei~~q~~~~~ 169 (409)
T TIGR02079 94 MPATTPKQKIDRVKIFGGEFIEIILVG--DTFDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQGTVAAEILDQLPEKP 169 (409)
T ss_pred ECCCCCHHHHHHHHHcCCCeeEEEEeC--CCHHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhHHHHHHHHHhcCCCC
Confidence 79999999999999999974 4444 46899999999999886 7899999999988 8999999999999997569
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCCC---cccccccCcC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVLDVAMLD 145 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~~~ 145 (225)
|+||+|+|+||+++|++.+||+++|++|||||||++++++. .+++ ..+.++|++.... ++.+..+++|
T Consensus 170 D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~~~~~~~~vd 249 (409)
T TIGR02079 170 DYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPD 249 (409)
T ss_pred CEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999998764 2332 1344577765543 2334467899
Q ss_pred eEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 146 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 146 ~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+.+.|+|+|+.++++.|++++|+++||+||+++||++++.++ .++++||+++ ||||.+++.
T Consensus 250 ~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~~~~--~~~~~Vv~il-sGgn~d~~~ 310 (409)
T TIGR02079 250 EVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEE--IKGKTVVCVV-SGGNNDIER 310 (409)
T ss_pred cEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEE-CCCCCCHHH
Confidence 999999999999999999999999999999999999987654 4678999999 899998875
No 24
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=4.2e-39 Score=281.75 Aligned_cols=202 Identities=23% Similarity=0.358 Sum_probs=173.8
Q ss_pred CCCCChHHHHHHHHHcCCEE---EEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC-
Q 027277 1 MPSTYSIERRIILRALGAEV---YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK- 76 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~- 76 (225)
||+++|+.|++.+|.|||+| +..+ .+++++.+.+.+++++. +++|++||+|+.+ ++||+|+|.||++|+++.
T Consensus 103 mP~~~~~~k~~~~r~~GA~vv~v~~~g--~~~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~tig~EI~eq~~~~~ 178 (420)
T PRK08639 103 MPVTTPQQKIDQVRFFGGEFVEIVLVG--DTFDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGTVAVEILEQLEKEG 178 (420)
T ss_pred ECCCChHHHHHHHHHcCCCeeEEEEeC--cCHHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhHHHHHHHHhccccC
Confidence 79999999999999999974 3334 46899999999999886 7999999999998 899999999999999755
Q ss_pred -ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCCC---cccccccC
Q 027277 77 -VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI---PPVLDVAM 143 (225)
Q Consensus 77 -~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~---~~~~~~~~ 143 (225)
||+||+|+|+|||++|++.++|+.+|++|||||||++++++. .+++ ..+.++|++.... ++.+.+++
T Consensus 179 ~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~~g~~~~~~~~~~ 258 (420)
T PRK08639 179 SPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDV 258 (420)
T ss_pred CCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCCccHHHHHHHHHh
Confidence 999999999999999999999999999999999999998764 2332 2345677765433 33455788
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 144 LDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 144 ~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+|+.+.|+|+|+.++++.|++++|+++||+||++++|++++.+. .+++++|+++ ||||.+++.
T Consensus 259 vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~~~~--~~~~~vv~v~-sGgn~d~~~ 321 (420)
T PRK08639 259 VDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELYKDE--IKGKTVVCVI-SGGNNDIER 321 (420)
T ss_pred CCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhhhhh--cCCCeEEEEe-CCCCCCHHH
Confidence 99999999999999999999999999999999999999986643 4678899998 899998875
No 25
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=3.9e-39 Score=280.96 Aligned_cols=201 Identities=23% Similarity=0.314 Sum_probs=172.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++++.|||+|+++++ +++++.+.+++++++. +++|++||+|+.+ ++||+|+++||++|++ .||+|
T Consensus 103 mp~~~~~~k~~~~~~~GA~Vv~~~~--~~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~Ei~eq~~-~~d~v 177 (406)
T PRK06382 103 MPEYTIPQKVNAVEAYGAHVILTGR--DYDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGLEIMEDLP-DLDQI 177 (406)
T ss_pred EcCCCHHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHHHHHHhcC-CCCEE
Confidence 7999999999999999999999984 6889999999999886 7899999999998 8999999999999994 79999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCC---CcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV---IPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~---~~~~~~~~~~~~~~ 148 (225)
|+|+|+||+++|+++++|+.+|++|||||||++++++. .+++ ..+.++|++.+. .++.+.++++|+.+
T Consensus 178 vvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v 257 (406)
T PRK06382 178 IVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIV 257 (406)
T ss_pred EEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999999998762 3332 234567876643 23445678999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.|++++|+++||+||+++++++.... ..++++||+++ ||||++++.
T Consensus 258 ~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~~~--~~~~~~Vv~i~-sGGn~d~~~ 315 (406)
T PRK06382 258 TVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKV--DVKGKKVAIVV-SGGNINPLL 315 (406)
T ss_pred EECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhccc--cCCCCEEEEEe-CCCCCCHHH
Confidence 99999999999999999999999999999987764321 23567888888 899977664
No 26
>PLN02970 serine racemase
Probab=100.00 E-value=5.7e-39 Score=272.85 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=169.3
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.|||+|+.++. +++++.+.+++++++. +++|++||+|+.+ +.||+|+++||++|++ .||+|
T Consensus 105 vp~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~la~~~-g~~~~~~~~n~~~-~~g~~t~g~Ei~~ql~-~~D~v 179 (328)
T PLN02970 105 VPKNAPACKVDAVIRYGGIITWCEP--TVESREAVAARVQQET-GAVLIHPYNDGRV-ISGQGTIALEFLEQVP-ELDVI 179 (328)
T ss_pred ECCCCCHHHHHHHHhcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hhehHHHHHHHHHhcc-CCCEE
Confidence 7999999999999999999999994 5788888899988775 7899999999987 7899999999999995 69999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCC--CcccccccCcCeEEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGV--IPPVLDVAMLDEVIT 149 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~--~~~~~~~~~~~~~~~ 149 (225)
|+|+|+|||++|++++||+.+|++|||+|||++++++. .+++ .++..++++.+. ..+...++++++.+.
T Consensus 180 v~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~d~~v~ 259 (328)
T PLN02970 180 IVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRASLGDLTWPVVRDLVDDVIT 259 (328)
T ss_pred EEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccCCcCHHHHHHHHhhCCEEEE
Confidence 99999999999999999999999999999999997653 2221 123445665431 123344678899999
Q ss_pred eCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhc-CC-CC-CCEEEEEecCCCCCCcCh
Q 027277 150 VSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKR-PE-NA-GKLIVVIFPSAGERYLST 209 (225)
Q Consensus 150 v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~-~~-~~-~~~vv~v~~~gG~~~~~~ 209 (225)
|+|+|+++++++|++++|+++||+||++++++++...+ +. .+ +++||+++ ||||.++++
T Consensus 260 V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~~~~~~~~~~~~~vv~v~-~Ggn~~~~~ 321 (328)
T PLN02970 260 VDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNPAWKGCKNVGIVL-SGGNVDLGV 321 (328)
T ss_pred ECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCcccccccccCCCeEEEEE-CCCCCCHHH
Confidence 99999999999999999999999999999998764332 21 22 46888888 889988775
No 27
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=7e-39 Score=279.70 Aligned_cols=201 Identities=26% Similarity=0.386 Sum_probs=173.7
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++++.|||+|++++ .+++++.+.+++++++. +++|++||+|+.+ ++||+|+|.||++|++ ++|+|
T Consensus 100 ~p~~~~~~k~~~~~~~GA~Vi~~~--~~~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~a~EI~~q~~-~~d~v 174 (404)
T PRK08198 100 MPETAPLSKVKATRSYGAEVVLHG--DVYDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTIGLEILEDLP-DVDTV 174 (404)
T ss_pred ECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHHHHHHHHhCC-CCCEE
Confidence 799999999999999999999998 46899999999998886 7899999999998 8999999999999994 79999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCC---CCcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAG---VIPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~---~~~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++.+||+++|++|||||||++++++. .+++ ..+..+|++.. ..++.+.++++|+.+
T Consensus 175 v~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~~~~~~~~d~~v 254 (404)
T PRK08198 175 VVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTFEIIRELVDDVV 254 (404)
T ss_pred EEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHHHHHHHhCCEEE
Confidence 99999999999999999999999999999999998763 2332 12334566533 223445578999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+.++++.|++++|+++||+||++++|++++... .+++++|+++ ||||.++++
T Consensus 255 ~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~~~~--~~~~~vv~vl-~ggn~~~~~ 312 (404)
T PRK08198 255 TVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSGKLD--VKGKKVVAVL-SGGNIDVLL 312 (404)
T ss_pred EECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhchhh--cCCCeEEEEE-CCCCCCHHH
Confidence 999999999999999999999999999999999987532 4678899999 789998775
No 28
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=1.3e-38 Score=269.23 Aligned_cols=206 Identities=22% Similarity=0.230 Sum_probs=169.9
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC--Ccc
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG--KVD 78 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~--~~d 78 (225)
||+++++.|+++|+.|||+|+.+++. .++++.+.++++++++++++|++||+||.+ ++||.|+++||++|+++ .||
T Consensus 81 ~p~~~~~~k~~~l~~~GA~v~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~~D 158 (316)
T cd06448 81 VPESTKPRVVEKLRDEGATVVVHGKV-WWEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEKVD 158 (316)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEECCc-hHHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCCCC
Confidence 69999999999999999999999853 266677777787776547899999999998 89999999999999975 599
Q ss_pred EEEEecCcchhHHHHHHHHHhhC-CCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCCCcc---cccccCcC
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVIPP---VLDVAMLD 145 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~-~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~~~---~~~~~~~~ 145 (225)
+||+|+|+|||++|++++||+++ ++++||+|||++++++. .++. ..+.++|++.+..+. ...++..+
T Consensus 159 ~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~ 238 (316)
T cd06448 159 AIVCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNI 238 (316)
T ss_pred EEEEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCC
Confidence 99999999999999999999996 99999999999997664 2221 124456777665432 33356789
Q ss_pred eEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHh-----hcCC-CCCCEEEEEecCCCCC-CcCh
Q 027277 146 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVA-----KRPE-NAGKLIVVIFPSAGER-YLST 209 (225)
Q Consensus 146 ~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~-----~~~~-~~~~~vv~v~~~gG~~-~~~~ 209 (225)
+.+.|+|+|+++++++|++++||++||+||++++|+++.. +++. .++++||+++ ||||. ++++
T Consensus 239 ~~v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~il-tg~n~~~~~~ 308 (316)
T cd06448 239 KSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVV-CGGSNITLEQ 308 (316)
T ss_pred eEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEE-CCCCCCCHHH
Confidence 9999999999999999999999999999999999998532 1111 4678999999 77775 7765
No 29
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=6.7e-39 Score=271.99 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=169.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|++++. +++++.+.++++++++ +++|++||+|+.+ ++||+|+++||++|++ .||+|
T Consensus 102 vp~~~~~~k~~~~~~~GAeV~~~~~--~~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~~~EI~~q~~-~~D~v 176 (321)
T PRK07048 102 MPQDAPAAKVAATRGYGGEVVTYDR--YTEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTAAKELFEEVG-PLDAL 176 (321)
T ss_pred ECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchHHHHHHhhcC-CCCEE
Confidence 7999999999999999999999994 4678888888988886 7899999999988 8999999999999995 79999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccc----cCCCC----c-cccccccCCCC---CcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL----NGGQP----G-KHLIQGIGAGV---IPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~----~~~~~----~-~~~~~gl~~~~---~~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++.++|+++++++||||||++++++ ..++. . .+..+++.... ..+.+..+++|+.+
T Consensus 177 v~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~~~~~~~~~d~~~ 256 (321)
T PRK07048 177 FVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFPIIRRLVDDIV 256 (321)
T ss_pred EEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHHHHHHHHhCCceE
Confidence 9999999999999999999999999999999998754 22321 1 12234443221 12233467899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+++++++|++++|+++||++|+++++++++.++ .+++++|+++ ||||.+++.
T Consensus 257 ~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~~~~--~~~~~vv~i~-tGGn~~~~~ 314 (321)
T PRK07048 257 TVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRGKVP--LKGKRVGVII-SGGNVDLAR 314 (321)
T ss_pred EECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhCchh--cCCCeEEEEe-CCCCCCHHH
Confidence 999999999999999999999999999999999987654 3577888888 799988775
No 30
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1e-38 Score=278.22 Aligned_cols=201 Identities=21% Similarity=0.308 Sum_probs=175.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|++++ .+++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|+ +.||+|
T Consensus 101 ~p~~~~~~k~~~~~~~GA~v~~~~--~~~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~-~~~d~v 175 (403)
T PRK07334 101 MPRFTPTVKVERTRGFGAEVVLHG--ETLDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVALEMLEDA-PDLDTL 175 (403)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEEC--cCHHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHHHHHHhcC-CCCCEE
Confidence 799999999999999999999998 46889999999998886 7899999999998 799999999999999 479999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccC---CC----CccccccccCCC---CCcccccccCcCeEEEe
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG---GQ----PGKHLIQGIGAG---VIPPVLDVAMLDEVITV 150 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~---~~----~~~~~~~gl~~~---~~~~~~~~~~~~~~~~v 150 (225)
|+|+|+|||++|++++||+++|++||++|||++++++.. +. ..++.++|++.+ ..++.+.++++|+.+.|
T Consensus 176 v~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~d~~v~V 255 (403)
T PRK07334 176 VVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGIAVKQPGQLTLEIVRRLVDDILLV 255 (403)
T ss_pred EEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCccCCCCCccceecCCCccHHHHHHHHHhCCeEEEE
Confidence 999999999999999999999999999999999887642 11 123556787743 34556667889999999
Q ss_pred CHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 151 SSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 151 ~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+|+|++++++.|++++|+++||+||++++|++++.++ .++++||+++ +|||++.+.
T Consensus 256 ~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~~~~--~~~~~vv~i~-~ggn~d~~~ 311 (403)
T PRK07334 256 SEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAYPER--FRGRKVGLVL-SGGNIDTRL 311 (403)
T ss_pred CHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhCchh--cCCCeEEEEE-CCCCCCHHH
Confidence 9999999999999999999999999999999986654 4677899999 778877775
No 31
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=7.4e-38 Score=267.81 Aligned_cols=201 Identities=21% Similarity=0.188 Sum_probs=171.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+.+|+.|||+|+.+++ +++++.+.+++++++. +++|++++.||.+ ++||+|+++||++|++ .||+|
T Consensus 134 vp~~~~~~k~~~~~~~GA~v~~v~~--~~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eql~-~pD~v 208 (347)
T PRK08329 134 VSYNASKEKISLLSRLGAELHFVEG--DRMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQIG-VPDYA 208 (347)
T ss_pred ECCCChHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHHcC-CCCEE
Confidence 7999999999999999999999985 4677788888888876 7788999999998 8999999999999995 79999
Q ss_pred EEecCcchhHHHHHHHHHhhC------CCcEEEEEeCCCCccccC-CCCccccccccCCCCCcc-----cccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLNG-GQPGKHLIQGIGAGVIPP-----VLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~------~~~~vigVe~~~~~~~~~-~~~~~~~~~gl~~~~~~~-----~~~~~~~~~~~ 148 (225)
|+|+|+||+++|++++||++. +.+||++|||+++.++.. .+...+.+++++.+..+. .+.+++.+..+
T Consensus 209 vvpvG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~~~~~t~a~gi~i~~~~~~~~~~~~l~~~~g~~~ 288 (347)
T PRK08329 209 FVPVGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKLADGIAIPEPPRKEEMLRALEESNGFCI 288 (347)
T ss_pred EEeCCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhccCCCCceeeeEEeCCCCCHHHHHHHHHHhCCEEE
Confidence 999999999999999999873 568999999999877653 223345667877654322 23467788999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCC-CCCEEEEEecCCCCCCc
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGERYL 207 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG~~~~ 207 (225)
.|+|+|+++++++|++ +||++||+||+++++++++.+++.. ++++||+++|.+|.|++
T Consensus 289 ~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l~~~g~i~~~~~Vv~~~TG~glK~~ 347 (347)
T PRK08329 289 SVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKLLEEGLIEGGSKVLLPLSGSGLKNL 347 (347)
T ss_pred EECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCCccCC
Confidence 9999999999999985 8999999999999999999988653 67899999988888875
No 32
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=3e-38 Score=268.30 Aligned_cols=199 Identities=24% Similarity=0.306 Sum_probs=170.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++++.|||+|+.++ .+++++.+.++++++++ +++|++||+||.+ ++||+|+|+||++|. ||+|
T Consensus 111 vP~~~~~~K~~~i~~~GAeVv~~g--~~~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Tig~EI~e~~---pD~V 183 (349)
T PRK08813 111 MPHGAPQTKIAGVAHWGATVRQHG--NSYDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTVGIELAAHA---PDVV 183 (349)
T ss_pred EcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHHHHHHHcCC---CCEE
Confidence 799999999999999999999998 46899999999999886 8999999999998 899999999999874 7999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc---CCC-----CccccccccCCC---CCcccccccCcCeEEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN---GGQ-----PGKHLIQGIGAG---VIPPVLDVAMLDEVIT 149 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~---~~~-----~~~~~~~gl~~~---~~~~~~~~~~~~~~~~ 149 (225)
|+|+|+||+++|++.+||+ +.+|||||||++++++. .++ ...+.++|++.. ..++.+..+++|+.+.
T Consensus 184 vvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~g~~~~~~~~~tiadgl~~~~p~~~~~~i~~~~vd~vv~ 261 (349)
T PRK08813 184 IVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVKVKIPGFLTRRLCSSLLDDVVI 261 (349)
T ss_pred EEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHcCCCcccCCCCceecccccCCcchhHHHHHHHhCCeEEE
Confidence 9999999999999999996 56999999999987653 122 123556777643 2344556788999999
Q ss_pred eCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHH
Q 027277 150 VSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRH 217 (225)
Q Consensus 150 v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~ 217 (225)
|+|+|+.+++++|++++|+++||+||++++|++++ +++++++|+ ||||.++++ +..++.
T Consensus 262 Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~------~~~~v~~vl-sGgN~d~~~--~~~~~~ 320 (349)
T PRK08813 262 VREAELRETLVRLALEEHVIAEGAGALALAAGRRV------SGKRKCAVV-SGGNIDATV--LATLLS 320 (349)
T ss_pred ECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh------CCCCEEEEE-CCCCCCHHH--HHHHHH
Confidence 99999999999999999999999999999998763 356899999 999988885 455444
No 33
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=4.8e-38 Score=266.22 Aligned_cols=201 Identities=26% Similarity=0.359 Sum_probs=170.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.|||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ +.||+|+++||++|++ .||+|
T Consensus 98 ~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~-~~d~v 172 (317)
T PRK06815 98 APEQASAIKLDAIRALGAEVRLYGG--DALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGTIGMELVEQQP-DLDAV 172 (317)
T ss_pred ECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhHHHHHHHHhcC-CCCEE
Confidence 6999999999999999999999995 5788888888888876 7889999999987 7899999999999995 69999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccC----CCC-----ccccccccCCCCC----cccccccCcCeE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG----GQP-----GKHLIQGIGAGVI----PPVLDVAMLDEV 147 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~----~~~-----~~~~~~gl~~~~~----~~~~~~~~~~~~ 147 (225)
|+|+|+||+++|++.+||++++++||+||||++++++.. ++. ..+.+++++.+.. ++.+.++++++.
T Consensus 173 v~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~ 252 (317)
T PRK06815 173 FVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFPLCQQLIDQK 252 (317)
T ss_pred EEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHHHHHHhCCeE
Confidence 999999999999999999999999999999999987642 221 2234566543322 233456889999
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 148 ~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+.|+|+|+++++++|++++||++||+||+++++++++.++ .++++||+++ |||+..++.
T Consensus 253 ~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~~~~--~~~~~vv~i~-tG~~~~~~~ 311 (317)
T PRK06815 253 VLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKLAPR--YQGKKVAVVL-CGKNIVLEK 311 (317)
T ss_pred EEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhCchh--cCCCcEEEEE-CCCCCCHHH
Confidence 9999999999999999999999999999999999998765 3577888888 667765553
No 34
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=3.5e-38 Score=267.54 Aligned_cols=206 Identities=20% Similarity=0.267 Sum_probs=172.9
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.|||+|+.++ .+++++.+.++++++++ ++||++|| ||.+ +.||+|+++||++|++ .+|+|
T Consensus 100 vp~~~~~~k~~~i~~~GA~V~~~~--~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~~Ei~~q~~-~~D~v 173 (322)
T PRK06110 100 VPHGNSVEKNAAMRALGAELIEHG--EDFQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYALELFRAVP-DLDVV 173 (322)
T ss_pred EcCCCCHHHHHHHHHcCCEEEEEC--CCHHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHHHHHHhhCC-CCCEE
Confidence 799999999999999999999997 46888989999988886 78999998 5776 7899999999999995 79999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCCCC-c--ccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAGVI-P--PVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~-~--~~~~~~~~~~~~ 148 (225)
|+|+|+||+++|++.+||+.+|++|||+|||++++++. .++. ..+..++++.... + +.+.++++|+.+
T Consensus 174 v~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~~ 253 (322)
T PRK06110 174 YVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIV 253 (322)
T ss_pred EEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999999987763 2332 1234456543321 1 233468899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHH
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRH 217 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~ 217 (225)
.|+|+|++++++.|++++|+++||+|++++++++++.+. .++++||+++ ||||++++. |.+++.
T Consensus 254 ~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~~~~--~~~~~Vv~i~-tGgn~d~~~--~~~~~~ 317 (322)
T PRK06110 254 RVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQERER--LAGKRVGLVL-SGGNIDRAV--FARVLA 317 (322)
T ss_pred EECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhChhh--hCCCcEEEEE-CCCCCCHHH--HHHHHh
Confidence 999999999999999999999999999999999987654 3577888888 889988874 666554
No 35
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-38 Score=261.88 Aligned_cols=203 Identities=24% Similarity=0.316 Sum_probs=181.1
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||..+|.-|++.+|.+||+|++.+ .+++++...|.++++++ ++.|+|||++|+. .+|++|++.||++|+...+++|
T Consensus 144 mP~~tp~~kiq~~~nlGA~Vil~G--~~~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~EIl~ql~~~~~AI 219 (457)
T KOG1250|consen 144 MPVATPLMKIQRCRNLGATVILSG--EDWDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGLEILEQLKEPDGAI 219 (457)
T ss_pred ecCCChHHHHHHHhccCCEEEEec--ccHHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHHHHHHhhcCCCCeE
Confidence 899999999999999999999999 57999999999999998 8999999999998 7999999999999997666699
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCc-----cccccccCCCCC---cccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGVI---PPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~ 148 (225)
+||||+||+++||+.|+|...|+++|||||++++.++. .+++. .+.++|++...+ .+.+...+.|+.+
T Consensus 220 ~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~~a~~~~d~vv 299 (457)
T KOG1250|consen 220 VVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFELAQKLVDRVV 299 (457)
T ss_pred EEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHHHHHhcCceEE
Confidence 99999999999999999999999999999999998775 34432 345688876543 4455678899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+..++.++.++|..++||++|++++|.+.. +...++++++|.++ +|||.+++.
T Consensus 300 vV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~-~~~~lk~~~vv~il-sG~n~~~~~ 358 (457)
T KOG1250|consen 300 VVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSG-KLNHLKGKKVVSIL-SGGNIDFDS 358 (457)
T ss_pred EeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhc-cccccCCceEEeec-ccCCCCccc
Confidence 999999999999999999999999999999999987 44457889999998 899988876
No 36
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=8.5e-38 Score=264.41 Aligned_cols=200 Identities=20% Similarity=0.248 Sum_probs=169.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|+.++. +++++.+.++++++++ +++|++||+||.+ ++||+|+++||++|++ .+|+|
T Consensus 97 ~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~a~Ei~~q~~-~~d~v 171 (317)
T TIGR02991 97 MSELVPQNKVDEIRRLGAEVRIVGR--SQDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGTLGLEVVEQMP-DLATV 171 (317)
T ss_pred cCCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHHHHHHHHHhCC-CCCEE
Confidence 7999999999999999999999994 5788888899998876 7899999999998 8999999999999994 68999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccC----C-CCCcccccccCcCe
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIG----A-GVIPPVLDVAMLDE 146 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~----~-~~~~~~~~~~~~~~ 146 (225)
|+|+|+|||++|++++||+++|++|||+|||++++++. .+++ .++.++++. . +..++.+.++++|+
T Consensus 172 vv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~~~~~~~~~vd~ 251 (317)
T TIGR02991 172 LVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAMCKALLDE 251 (317)
T ss_pred EEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHHHHHHHHHhCCe
Confidence 99999999999999999999999999999999887664 2322 234455542 1 22345566788999
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.+.|+|+|++++++.|++++|+++||+|++++|++++... ..++++|+++ ||||.+.+.
T Consensus 252 ~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~~~---~~~~~vvvvl-tG~n~~~~~ 310 (317)
T TIGR02991 252 IVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAGKI---KNPGPCAVIV-SGRNIDMDL 310 (317)
T ss_pred EEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcCcc---ccCCcEEEEe-CCCCCCHHH
Confidence 9999999999999999999999999999999999985221 2366888888 899987764
No 37
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=9.8e-38 Score=265.80 Aligned_cols=200 Identities=19% Similarity=0.133 Sum_probs=165.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.|||+|+.++. .+++.+.+++ +++ +++||++||+|+.+ ++||+|++.||++|++..||+|
T Consensus 102 ~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~a~Ei~~q~~~~~D~v 175 (338)
T PRK06608 102 LPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTLCYEALQQLGFSPDAI 175 (338)
T ss_pred ECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHHHHHHHHhcCCCcCEE
Confidence 7999999999999999999999973 3667777777 544 47899999999988 7899999999999997679999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC------ccccccccCCCCCc---ccccccCcCeE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGVIP---PVLDVAMLDEV 147 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~------~~~~~~gl~~~~~~---~~~~~~~~~~~ 147 (225)
|+|+|+|||++|+++++|..++.++|+||||.+++++. .++. ..+..++++.+... +.+.+ .+|+.
T Consensus 176 v~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~~~~~~~~~-~~d~~ 254 (338)
T PRK06608 176 FASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVSARTFEYLK-KLDDF 254 (338)
T ss_pred EEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCCHHHHHHHH-hCCCE
Confidence 99999999999999999999999999999999987542 2321 13445777654321 22223 36889
Q ss_pred EEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 148 ~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+.|+|+|++++++.|++++|+++||+||++++|++++.++. .++++||+++ ||||++...
T Consensus 255 v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~~~~~-~~~~~Vv~v~-tgg~~d~~~ 314 (338)
T PRK06608 255 YLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQ-SKPQKLLVIL-SGGNIDPIL 314 (338)
T ss_pred EEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhhchhh-cCCCeEEEEe-CCCccCHHH
Confidence 99999999999999999999999999999999999987653 3578899999 678876654
No 38
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=1.4e-37 Score=271.99 Aligned_cols=207 Identities=17% Similarity=0.236 Sum_probs=173.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC-ccE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK-VDA 79 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~-~d~ 79 (225)
||+++++.|+.+|+.|||+|+.+++ +++++.+.+++++++++++++++++.+|+. ++||+|+++||++|+++. ||+
T Consensus 167 vP~~~~~~k~~~~~~~GA~Vi~v~g--~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~eQl~~~~pD~ 243 (421)
T PRK07591 167 IPADLEAGKIVGTLVYGPTLVAVDG--NYDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAEQLGWRLPDQ 243 (421)
T ss_pred EcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHHHcCCCCCCE
Confidence 7999999999999999999999995 588899999998887657899998888987 899999999999999755 999
Q ss_pred EEEecCcchhHHHHHHHHHhh-------CCCcEEEEEeCCCCcccc----CCCC------ccccccccCCCCC-----cc
Q 027277 80 FIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP------GKHLIQGIGAGVI-----PP 137 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~-------~~~~~vigVe~~~~~~~~----~~~~------~~~~~~gl~~~~~-----~~ 137 (225)
||+|+|+||+++|++++|+++ .+.+||++|||++++++. .+.. ..+..+++..+.. ..
T Consensus 244 iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~~~ 323 (421)
T PRK07591 244 VVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPYAL 323 (421)
T ss_pred EEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHHHH
Confidence 999999999999999999997 578999999999987664 2221 1233355533221 11
Q ss_pred cccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCC-CCCEEEEEecCCCCCCcChh
Q 027277 138 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 138 ~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG~~~~~~~ 210 (225)
.+.+++.+..+.|+|+|++++++.|++++||++||+||+++++++++.+++.. ++++||+++|++|+||++.+
T Consensus 324 ~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l~~~g~i~~~~~VV~i~tG~G~kd~~~~ 397 (421)
T PRK07591 324 DIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKLVEAGKIDPDEETVVYITGNGLKTLEAV 397 (421)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHHHHhCCCCCCCeEEEEeCCCccCCHHHH
Confidence 23367788999999999999999999999999999999999999999886543 67889999976799998863
No 39
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=2e-37 Score=269.36 Aligned_cols=205 Identities=20% Similarity=0.204 Sum_probs=172.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC-ccE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK-VDA 79 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~-~d~ 79 (225)
||+++++.|+++|++|||+|+.+++ +++++.+.+++.+++. ++|+++++.||.+ ++||+|+++||++|++++ ||+
T Consensus 157 vp~~~~~~k~~~~~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~eQl~~~~pD~ 232 (394)
T PRK08197 157 MPADAPEITRLECALAGAELYLVDG--LISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAEQLGWRLPDV 232 (394)
T ss_pred EcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHHHcCCCCCCE
Confidence 6999999999999999999999995 5788888888888876 7899999999998 899999999999999754 999
Q ss_pred EEEecCcchhHHHHHHHHHhh-------CCCcEEEEEeCCCCcccc----CCCC-------ccccccccCCCCCcc--c-
Q 027277 80 FIAGIGTGGTVTGAGRFLKEK-------NPNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIGAGVIPP--V- 138 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~-------~~~~~vigVe~~~~~~~~----~~~~-------~~~~~~gl~~~~~~~--~- 138 (225)
||+|+|+||+++|++++|+++ .+.+||++|||+++.++. .+.. ..+..+++..+.... .
T Consensus 233 vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~~ 312 (394)
T PRK08197 233 ILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFLV 312 (394)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHHH
Confidence 999999999999999999987 378999999999997663 1221 122335554332111 1
Q ss_pred --ccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcCh
Q 027277 139 --LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 139 --~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~~ 209 (225)
..+++.+..+.|+|+|+++++++|++++||++||+||+++++++++.+++. .++++||+++|++|.||+++
T Consensus 313 ~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l~~~~~~~~~~~Vv~v~tG~g~k~~~~ 386 (394)
T PRK08197 313 LDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQLRESGWLKGDERVVLFNTGSGLKYPDT 386 (394)
T ss_pred HHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHHHHcCCcCCCCcEEEEeCCCCcCchhh
Confidence 124678899999999999999999999999999999999999999988754 35789999999999999986
No 40
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=2.1e-37 Score=270.47 Aligned_cols=213 Identities=21% Similarity=0.187 Sum_probs=172.7
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-----
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG----- 75 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~----- 75 (225)
||+++|+.|+++||.|||+|+.++ .+++++.+.++++++++++++|+++++++.. ++||+|+++||++|+++
T Consensus 187 vP~~a~~~K~~~ir~~GAeVi~~~--~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~v 263 (441)
T PRK02991 187 MSADARQWKKDKLRSHGVTVVEYE--GDYGVAVEEGRKAAESDPNCYFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVV 263 (441)
T ss_pred ECCCCCHHHHHHHHhCCCEEEEEC--CCHHHHHHHHHHHHHhcCCeEeCCCCCchhH-HHhHHHHHHHHHHHhhhccCcc
Confidence 799999999999999999999999 4689999999999888656899999987776 89999999999999952
Q ss_pred ---CccEEEEecCcchhHHHHHHHHHhh-CCCcEEEEEeCCCCcccc----CCCC-----------ccccccccCCCCC-
Q 027277 76 ---KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVLN----GGQP-----------GKHLIQGIGAGVI- 135 (225)
Q Consensus 76 ---~~d~iv~~~G~Gg~~aGi~~~~k~~-~~~~~vigVe~~~~~~~~----~~~~-----------~~~~~~gl~~~~~- 135 (225)
.||+||+|+|+||+++|++.+||++ .+++|||+|||++++++. .++. ..+.++|++.+..
T Consensus 264 D~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~ 343 (441)
T PRK02991 264 DADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRAS 343 (441)
T ss_pred ccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcc
Confidence 2679999999999999999999997 688999999999987653 2321 1244577766532
Q ss_pred --cccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC------C----CCCEEEEEecCCC
Q 027277 136 --PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE------N----AGKLIVVIFPSAG 203 (225)
Q Consensus 136 --~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~------~----~~~~vv~v~~~gG 203 (225)
++.+.++++|+.+.|+|+|+.++++.|++++|+++||+||+++++++++.+... . ++++||++. |||
T Consensus 344 ~~~~~~~~~~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~-~gg 422 (441)
T PRK02991 344 GFVGRAMERLLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWA-TGG 422 (441)
T ss_pred hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEE-CCC
Confidence 344556889999999999999999999999999999999999999987654321 1 356777777 666
Q ss_pred CCCcChhhchhHHHh
Q 027277 204 ERYLSTALFESIRHE 218 (225)
Q Consensus 204 ~~~~~~~~~~~~~~~ 218 (225)
+..... .+.++...
T Consensus 423 ~~~~~~-~~~~~~~~ 436 (441)
T PRK02991 423 SMVPEE-EMEQYLAK 436 (441)
T ss_pred CCCCHH-HHHHHHHh
Confidence 654443 45555443
No 41
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1e-37 Score=267.13 Aligned_cols=205 Identities=20% Similarity=0.262 Sum_probs=167.6
Q ss_pred CCCC-ChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccE
Q 027277 1 MPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~ 79 (225)
||++ .++.|+++|++|||+|+.++. +++++.+.+++++++. +++++++ .||.+ ++||.|+++||++|++..||+
T Consensus 105 vp~~~~~~~k~~~~~a~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~-~n~~~-~~G~~t~~~EI~~Q~~~~~D~ 179 (351)
T PRK06352 105 IPEGKVALGKLAQAVMYGADIISIQG--NFDEALKSVRELAETE-AVTLVNS-VNPYR-LEGQKTAAFEICEQLGSAPDV 179 (351)
T ss_pred EeCCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcccccC-CCccc-eeeHHHHHHHHHHHcCCCCCE
Confidence 6887 599999999999999999984 5788889999988875 6676665 58988 789999999999999767999
Q ss_pred EEEecCcchhHHHHHHHHHhhCCC-----cEEEEEeCCCCccccCCCCc--c-ccccccCCCC-Cccccc----ccCcCe
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNPN-----IKVYGIEPSESAVLNGGQPG--K-HLIQGIGAGV-IPPVLD----VAMLDE 146 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~~-----~~vigVe~~~~~~~~~~~~~--~-~~~~gl~~~~-~~~~~~----~~~~~~ 146 (225)
||+|+|+|||++|++++||+++++ +|||+|||++++++..+++. + +..+++..+. ..+... +.+.+.
T Consensus 180 vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~~g~~~~~~~~ia~~l~~~~~~~~~~~~~~~d~~~g~ 259 (351)
T PRK06352 180 LAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIVQGKPIDNPETIATAIRIGNPASWGLAEAARDESGGY 259 (351)
T ss_pred EEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHHhCCCcCCCCcceeEEEeCCCCcHHHHHHHHHHhCCE
Confidence 999999999999999999998876 89999999999876554432 1 2224443321 111121 233456
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcChh
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~~~ 210 (225)
.+.|+|+|+++++++|++++||++||+||++++|++++.+++. .++++||+++|++|+||+++.
T Consensus 260 ~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~~~~~~~~~~~~Vv~v~tg~G~~~~~~~ 324 (351)
T PRK06352 260 IHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTA 324 (351)
T ss_pred EEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCCcCChHHH
Confidence 8999999999999999999999999999999999999887533 357789999988899999975
No 42
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=6.9e-37 Score=262.30 Aligned_cols=216 Identities=20% Similarity=0.224 Sum_probs=172.5
Q ss_pred CCCCC-hHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccE
Q 027277 1 MPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79 (225)
Q Consensus 1 vP~~~-~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~ 79 (225)
||++. ++.|+++|+.|||+|+++++ +++++.+.+++++++. ++++++ +.||.+ +.||.|+++||++|++..||+
T Consensus 105 vp~~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~eq~~~~~D~ 179 (352)
T PRK06721 105 IPEGKIAHGKLAQAVAYGAEIISIEG--NFDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEICDQLQRAPDV 179 (352)
T ss_pred ECCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHHHHhCCCCCE
Confidence 68874 88999999999999999984 6888889999998886 667776 458887 789999999999999767999
Q ss_pred EEEecCcchhHHHHHHH----HHhhC-CCcEEEEEeCCCCccccCCCC---ccccccccCCCCCc-c----cccccCcCe
Q 027277 80 FIAGIGTGGTVTGAGRF----LKEKN-PNIKVYGIEPSESAVLNGGQP---GKHLIQGIGAGVIP-P----VLDVAMLDE 146 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~----~k~~~-~~~~vigVe~~~~~~~~~~~~---~~~~~~gl~~~~~~-~----~~~~~~~~~ 146 (225)
||+|+|+||+++|++.+ +|..+ |.+|||+|||++++++..++. ..+..++++.+... + .....++|.
T Consensus 180 ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~~g~~~~~~~tia~~l~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PRK06721 180 LAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIVKGHVIDEPETIATAIRIGNPASWSYAVEAAEQSHGE 259 (352)
T ss_pred EEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHhhCCcCCCCCceeeccccCCCCCHHHHHHHHHhcCCE
Confidence 99999999999986554 45554 889999999999987765432 12334555543211 1 112457899
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcChhhchhHHHhcCCC
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTALFESIRHEVENM 222 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~ 222 (225)
.+.|+|+|+++++++|+++|||++||++|+++++++++.+++. .++++||+++|++|.||++. ++++.|....++
T Consensus 260 ~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~~~~~~~~~~~~Vv~v~~g~g~k~~~~-~~~~~~~~~~~~ 335 (352)
T PRK06721 260 IDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKHVQSGKIKKGETVVAVLTGNGLKDPDI-AISSNTLDIASV 335 (352)
T ss_pred EEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCcCchHH-HhhhccCCcccC
Confidence 9999999999999999999999999999999999999887543 35789999999999999987 565555443333
No 43
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-37 Score=244.00 Aligned_cols=201 Identities=23% Similarity=0.365 Sum_probs=175.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|..|+..++.|||+|+++++. .+++.+.++++.++. +++.++||++|.. ++||+|+++|+++|+ +.+|++
T Consensus 103 vP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA~ElleqV-g~iDal 177 (323)
T KOG1251|consen 103 VPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIALELLEQV-GEIDAL 177 (323)
T ss_pred ecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHHHHHHHhh-CccceE
Confidence 79999999999999999999999974 467788899999998 8899999999998 999999999999999 489999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCC-----CccccccccCC---CCCcccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQ-----PGKHLIQGIGA---GVIPPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~-----~~~~~~~gl~~---~~~~~~~~~~~~~~~~ 148 (225)
|+|+|+||+++|++...+.+.|+++|++|||+....-. .+. ...+.++|... +..+|.+.++++|+.+
T Consensus 178 fvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~~t~pIir~~vddi~ 257 (323)
T KOG1251|consen 178 FVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGPLTWPIIRDLVDDIL 257 (323)
T ss_pred EEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccccchHHHHHHhhhhe
Confidence 99999999999999999999999999999998875322 232 12344566654 3446778899999999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+|+|+|+.++++.+|.+..+.+||+++.+|||++....+ ...+++.+++ +|||.++.+
T Consensus 258 Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~--~~~K~igIiL-sGGNVD~~~ 315 (323)
T KOG1251|consen 258 TVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA--LNIKRIGIIL-SGGNVDLNS 315 (323)
T ss_pred eecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH--hccCceEEEE-eCCcccccc
Confidence 999999999999999999999999999999999876544 3478999999 999999986
No 44
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=2.2e-37 Score=262.75 Aligned_cols=206 Identities=22% Similarity=0.280 Sum_probs=169.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|+.++. +++++.+.+++++++. +++|++||+||.+ ++||+|+++||++|++ ++|+|
T Consensus 97 vp~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~~~Ei~~Q~~-~~d~i 171 (322)
T PRK07476 97 MSRLVPANKVDAIRALGAEVRIVGR--SQDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTIGLEILEALP-DVATV 171 (322)
T ss_pred eCCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHHHHHHHHhCc-CCCEE
Confidence 7999999999999999999999984 5788888999998886 7799999999998 8999999999999995 69999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCC-----ccccccccCCC-----CCcccccccCcCe
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQP-----GKHLIQGIGAG-----VIPPVLDVAMLDE 146 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~-----~~~~~~~~~~~~~ 146 (225)
|+|+|+||+++|++++||+++|++|||+|||++++++. .+++ ..+..+++..+ ..+..+.++.+|+
T Consensus 172 v~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~~~~~~~~~~d~ 251 (322)
T PRK07476 172 LVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRYTFAMCRALLDD 251 (322)
T ss_pred EEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHHHHHHHHhcCCe
Confidence 99999999999999999999999999999999887543 2221 12334544321 1233455678999
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHH
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIR 216 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~ 216 (225)
.+.|+|+|+++++++|++++|+++||+++++++++++.. ....+++||+++ |||+.+.++ |..++
T Consensus 252 ~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~~--~~~~~~~Vvvi~-tGg~~~~~~--~~~~~ 316 (322)
T PRK07476 252 VVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGK--IAARDGPIVVVV-SGANIDMEL--HRRII 316 (322)
T ss_pred EEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhCC--cccCCCcEEEEE-CCCCCCHHH--HHHHH
Confidence 999999999999999999999999999999999998422 112346788877 899987775 44443
No 45
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.6e-37 Score=260.81 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=166.3
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+.+|+.|||+|+.+++ +++++.+.+.+++++. +++|++||+||.+ +.||+|+++||++|+ +.||+|
T Consensus 98 ~p~~~~~~k~~~~~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~~~Ei~eq~-~~~D~i 172 (310)
T PRK08246 98 VPETAPPAKVARLRALGAEVVVVGA--EYADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTLGLEIEEQA-PGVDTV 172 (310)
T ss_pred ECCCCcHHHHHHHHHCCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHHHHHHHHhc-CCCCEE
Confidence 6999999999999999999999984 5788888899888876 7899999999998 899999999999999 479999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCcccc-----ccccCCCCC---cccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPGKHL-----IQGIGAGVI---PPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~~~~-----~~gl~~~~~---~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++.+|+. .+||++|||++++++. .+++..+. .++++.+.. ++.+.+++.|+.+
T Consensus 173 v~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 249 (310)
T PRK08246 173 LVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALARAHVVTSV 249 (310)
T ss_pred EEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHHHHHHHhcCCeEE
Confidence 9999999999999999974 4899999999998764 24433222 233443332 3346678899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
.|+|+|+++++++|++++|+++||+||++++++++...+. .++++||+++ ||||+++++
T Consensus 250 ~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~~~~~-~~~~~vv~i~-~g~n~d~~~ 308 (310)
T PRK08246 250 LVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVP-APGERVAVVL-CGANTDPAT 308 (310)
T ss_pred EECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhCCccc-cCCCeEEEEE-CCCCCChhh
Confidence 9999999999999999999999999999999997644322 3567888888 889988775
No 46
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=6.6e-37 Score=258.13 Aligned_cols=197 Identities=28% Similarity=0.383 Sum_probs=168.4
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++++.|+++|+.+||+|+.+++ +++++.+.+++++++. +++|++||+|+.+ ..||+++++||++|++ .||+|
T Consensus 95 vp~~~~~~k~~~l~~~Ga~vi~~~~--~~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~-~~d~v 169 (304)
T cd01562 95 MPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGTIGLEILEQVP-DLDAV 169 (304)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHHHHHHHHHhcC-CCCEE
Confidence 6899999999999999999999995 5888999999999886 7899999999987 7899999999999996 49999
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc----CCCCc-----cccccccCCCCC---cccccccCcCeEE
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN----GGQPG-----KHLIQGIGAGVI---PPVLDVAMLDEVI 148 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~----~~~~~-----~~~~~gl~~~~~---~~~~~~~~~~~~~ 148 (225)
|+|+|+|||++|++++||++++.+|||+|+|.+++++. .++.. .+...+++.+.. ++.+.+++.++.+
T Consensus 170 v~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 249 (304)
T cd01562 170 FVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVV 249 (304)
T ss_pred EEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHHHHHhCCeEE
Confidence 99999999999999999999999999999999987653 22211 223345543321 2335568899999
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 205 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~ 205 (225)
.|+|+|+++++++|+++||+++||+||+++++++++.++. ++++||+++ ||||.
T Consensus 250 ~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~~~~~--~~~~vv~i~-tGG~~ 303 (304)
T cd01562 250 TVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLDL--KGKKVVVVL-SGGNI 303 (304)
T ss_pred EECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhCcccc--CCCeEEEEe-cCCCC
Confidence 9999999999999999999999999999999999987764 567888888 88875
No 47
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=9.3e-37 Score=264.95 Aligned_cols=205 Identities=19% Similarity=0.241 Sum_probs=169.5
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeC-----CCCC-CCChHhhHhhhHHHHHHhhC
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILG-----QFEN-PANPEIHYETTGPEIWNDSG 74 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~Ql~ 74 (225)
||+++++.|+.+|+.|||+|+.++. +++++.+.+++++++. +++|++ ||+| +.+.++||+|+++||++|++
T Consensus 146 vp~~~~~~k~~~i~~~GA~Vi~v~~--~~~~~~~~a~~~~~~~-g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~ 222 (399)
T PRK08206 146 MPKGSSEERVDAIRALGAECIITDG--NYDDSVRLAAQEAQEN-GWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLK 222 (399)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEeCC--CHHHHHHHHHHHHHHc-CCEEecCccccCcccccHHHHHHhHHHHHHHHHHHH
Confidence 7999999999999999999999994 6889999999988886 788886 6765 55558999999999999997
Q ss_pred C---CccEEEEecCcchhHHHHHHHHHhhC--CCcEEEEEeCCCCcccc----CCCCc------cccccccCCCC---Cc
Q 027277 75 G---KVDAFIAGIGTGGTVTGAGRFLKEKN--PNIKVYGIEPSESAVLN----GGQPG------KHLIQGIGAGV---IP 136 (225)
Q Consensus 75 ~---~~d~iv~~~G~Gg~~aGi~~~~k~~~--~~~~vigVe~~~~~~~~----~~~~~------~~~~~gl~~~~---~~ 136 (225)
+ .||+||+|+|+|||++|++.+||+++ +.+|||+|||++++++. .+++. .+..+++..+. .+
T Consensus 223 ~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~Vep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~ 302 (399)
T PRK08206 223 EMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVVEPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLA 302 (399)
T ss_pred hcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEECCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHH
Confidence 5 59999999999999999999999984 47999999999998763 23221 23446665432 23
Q ss_pred ccccccCcCeEEEeCHHHHHHHHHHHHH----hcCCeecchHHHHHHHHHHHhhc---------CC-CCCCEEEEEecCC
Q 027277 137 PVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLVGISSGAAAAAAIRVAKR---------PE-NAGKLIVVIFPSA 202 (225)
Q Consensus 137 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~----~eGi~~epssgaalaa~~~~~~~---------~~-~~~~~vv~v~~~g 202 (225)
+.+.++.+|+.+.|+|+|+++++++|++ ++|+++||+||++++|++++.++ +. .++++||+++ |+
T Consensus 303 ~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vepsgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~il-tg 381 (399)
T PRK08206 303 WEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGESGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLIS-TE 381 (399)
T ss_pred HHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecchHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEE-CC
Confidence 4455788999999999999999999996 78999999999999999976522 22 2467899999 69
Q ss_pred CCCCcCh
Q 027277 203 GERYLST 209 (225)
Q Consensus 203 G~~~~~~ 209 (225)
||++.++
T Consensus 382 G~~d~~~ 388 (399)
T PRK08206 382 GDTDPDR 388 (399)
T ss_pred CCCCHHH
Confidence 9999886
No 48
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=1.6e-36 Score=260.45 Aligned_cols=204 Identities=22% Similarity=0.271 Sum_probs=168.7
Q ss_pred CCCC-ChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccE
Q 027277 1 MPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~ 79 (225)
||++ +++.|+++|+.|||+|+.+++ +++++.+.++++++++ +++++++ .||.+ ++||.|+++||++|++..||+
T Consensus 108 vP~~~~~~~k~~~~~~~GA~Vi~~~~--~~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~q~~~~~d~ 182 (353)
T PRK07409 108 IPEGKIALGKLAQAVMYGAEIIQIDG--NFDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVDALGDAPDY 182 (353)
T ss_pred EcCCCCchhhHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHHHhCCCCCE
Confidence 6887 689999999999999999994 6889999999988877 5777776 48888 789999999999999667999
Q ss_pred EEEecCcchhHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCCCc---cccccccCCCCCccc------ccccCc
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGGQPG---KHLIQGIGAGVIPPV------LDVAML 144 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~------~~~vigVe~~~~~~~~~~~~~---~~~~~gl~~~~~~~~------~~~~~~ 144 (225)
||+|+|+||+++|++.+|+++.+ .+|||+|||.++.++..+++. .+..++++.+. +.. +.+++.
T Consensus 183 iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~~g~~~~~~~ti~~~l~~~~-~~~~~~~~~~~~~~~ 261 (353)
T PRK07409 183 HCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIVRGEPVKNPETIATAIRIGN-PASWDKAVAARDESG 261 (353)
T ss_pred EEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHhhCCcCCCCcceeeeeecCC-CCCHHHHHHHHHHhC
Confidence 99999999999999999998743 489999999998777654432 23335554332 221 124566
Q ss_pred CeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcChh
Q 027277 145 DEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 145 ~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~~~ 210 (225)
++.+.|+|+|+++++++|++++|+++||+||+++++++++.+++. .++++||+++|++|+||++++
T Consensus 262 ~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~~~~~~~~~~~~VV~i~tg~g~k~~~~~ 328 (353)
T PRK07409 262 GLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVVCTLTGNGLKDPDTA 328 (353)
T ss_pred CEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEecCccccchHHH
Confidence 789999999999999999999999999999999999999887632 357899999977899999974
No 49
>PLN02569 threonine synthase
Probab=100.00 E-value=1.8e-35 Score=261.01 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=170.7
Q ss_pred CCCC-ChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC-cc
Q 027277 1 MPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK-VD 78 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~-~d 78 (225)
||++ +++.|+.+|+.|||+|+.+++ +++++.+.++++++++ ++|+++++ ||.+ ++||+|+++||++|++++ ||
T Consensus 217 vP~~~~~~~k~~qi~a~GA~Vi~v~g--~~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI~eQl~~~~pD 291 (484)
T PLN02569 217 LPADKISIAQLVQPIANGALVLSIDT--DFDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEILQQFDWEVPD 291 (484)
T ss_pred EcCCCCCHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHHHHHcCCCCCC
Confidence 6886 888999999999999999994 7899999999988886 68999998 8998 899999999999999765 99
Q ss_pred EEEEecCcchhHHHHHHHHHhhC------CCcEEEEEeCCCCcccc----CCC-------CccccccccCCCCCcccc--
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQ-------PGKHLIQGIGAGVIPPVL-- 139 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~-------~~~~~~~gl~~~~~~~~~-- 139 (225)
+||+|+|+||+++|++++||++. +.+||++|||++++++. .+. ..++.++++..+. |..+
T Consensus 292 ~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~-P~~~~~ 370 (484)
T PLN02569 292 WVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGD-PVSIDR 370 (484)
T ss_pred EEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCC-CccHHH
Confidence 99999999999999999999873 45899999999997664 222 1235567776552 3221
Q ss_pred ----cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcChh
Q 027277 140 ----DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 140 ----~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~~~ 210 (225)
.++..+..+.|+|+|+++++++ ++++|+++||+||++++|++++.+++. .++++||+++|++|.||.+..
T Consensus 371 ~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl~~~g~i~~~~~VV~i~Tg~GlK~~~~~ 445 (484)
T PLN02569 371 AVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKLRASGVIGPTDRTVVVSTAHGLKFTQSK 445 (484)
T ss_pred HHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCcccChhHH
Confidence 2344566799999999999999 889999999999999999999987654 357899999999999999853
No 50
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-36 Score=240.43 Aligned_cols=222 Identities=40% Similarity=0.605 Sum_probs=188.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCC-----Ch-HHHHHHHHHHHHhCC--CeEEeCCCCCCCChHhhHhhhHHHHHHh
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAV-----GF-EGFVKKGEEILNRTP--NGYILGQFENPANPEIHYETTGPEIWND 72 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~-----~~-~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q 72 (225)
||++.+++|.+.++.+||+|+.|++.. .| ..+.+.|.++..+.. ..+|.+||+|+.||.+||.++|.|||.|
T Consensus 130 mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTGPEIw~Q 209 (391)
T KOG1481|consen 130 MPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTGPEIWHQ 209 (391)
T ss_pred CCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcCcHHHHh
Confidence 899999999999999999999998642 12 334444444443321 1477899999999999999999999999
Q ss_pred hCCCccEEEEecCcchhHHHHHHHHHhhCCC-cEEEEEeCCCCcccc-------------CCC----CccccccccCCCC
Q 027277 73 SGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-IKVYGIEPSESAVLN-------------GGQ----PGKHLIQGIGAGV 134 (225)
Q Consensus 73 l~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~-~~vigVe~~~~~~~~-------------~~~----~~~~~~~gl~~~~ 134 (225)
.++.+|++++.+|+|||++|+.+++|+..+. +.++.++|-++..+. +|. ...+..+|++...
T Consensus 210 tkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSGlYnkV~~GVmy~~~e~eG~r~r~q~dti~EGIGinR 289 (391)
T KOG1481|consen 210 TKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSGLYNKVNYGVMYDHIETEGTRRRNQVDTITEGIGINR 289 (391)
T ss_pred hcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCchhhhhhhhhhhhhhhhcCcccCCCcchhhhcccccc
Confidence 9999999999999999999999999998776 899999999995432 111 2345668888877
Q ss_pred Ccccc--cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhc
Q 027277 135 IPPVL--DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212 (225)
Q Consensus 135 ~~~~~--~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~ 212 (225)
+..++ ..+++|+.+.|+|++++++.+.|..++|+|++.||+.+..|+.++++.. .+++++|+++|++|.+++++ +|
T Consensus 290 iT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~vAk~L-gpG~~iVtilCDsG~rh~sk-~~ 367 (391)
T KOG1481|consen 290 ITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRVAKTL-GPGHTIVTILCDSGSRHLSK-LF 367 (391)
T ss_pred cccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHHHHhc-CCCceEEEEEeCCcchHHHH-hc
Confidence 66554 4678999999999999999999999999999999999999999999876 58999999999999999998 89
Q ss_pred hhHHHhcCCCCC
Q 027277 213 ESIRHEVENMPI 224 (225)
Q Consensus 213 ~~~~~~~~~~~~ 224 (225)
++...+.+++.|
T Consensus 368 ~~~~l~~~~l~p 379 (391)
T KOG1481|consen 368 SESFLESKKLSP 379 (391)
T ss_pred CHHHHhhcCCCc
Confidence 999999988875
No 51
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=1.7e-35 Score=251.63 Aligned_cols=201 Identities=22% Similarity=0.260 Sum_probs=167.9
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDA 79 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~ 79 (225)
||+++|+.|+++|+.+||+|+.++. +++++.+.++++++++ ++|++||+|+.+ +.||.+++.||++|+++ .||+
T Consensus 100 vp~~~~~~k~~~l~~~GA~Vi~~~~--~~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~d~ 174 (324)
T cd01563 100 LPAGKALGKLAQALAYGATVLAVEG--NFDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVPDY 174 (324)
T ss_pred EeCCCCHHHHHHHHHcCCEEEEECC--cHHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHHHHHcCCCCCCE
Confidence 6899999999999999999999985 5788888899988775 788999999998 78999999999999963 6999
Q ss_pred EEEecCcchhHHHHHHHHHhhC------CCcEEEEEeCCCCcccc----CCC-------CccccccccCCCCCc-----c
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQ-------PGKHLIQGIGAGVIP-----P 137 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~-------~~~~~~~gl~~~~~~-----~ 137 (225)
||+|+|+|||++|++.+||++. ++++||+|||.+++++. .+. ...+.+++++.+..+ +
T Consensus 175 vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~~~ 254 (324)
T cd01563 175 VVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKAL 254 (324)
T ss_pred EEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHHHH
Confidence 9999999999999999999875 57999999999986553 221 112334666543211 1
Q ss_pred cccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCC
Q 027277 138 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERY 206 (225)
Q Consensus 138 ~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~ 206 (225)
.+..++.++.+.|+|+|+++++++|++++|+++||+||+++++++++.++.. .++++||+++|++|.|+
T Consensus 255 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l~~~~~~~~~~~Vv~v~tg~g~~~ 324 (324)
T cd01563 255 RAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVVLTGHGLKD 324 (324)
T ss_pred HHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHHHHcCCCCCCCcEEEEeCCCccCC
Confidence 2334677899999999999999999999999999999999999999987643 35789999999999874
No 52
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=1.3e-35 Score=258.30 Aligned_cols=205 Identities=23% Similarity=0.227 Sum_probs=169.5
Q ss_pred CCCC-ChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-Ccc
Q 027277 1 MPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVD 78 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d 78 (225)
||++ +++.|+.+++.|||+|+.+++ +++++.+.+++++++. ++|+++++ ||.+ ++||+|+++||++|+++ .||
T Consensus 145 vP~~~~~~~k~~~~~~~GA~vi~v~~--~~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei~eQl~~~~pd 219 (397)
T PRK06260 145 LPAGKVALGKLAQALLHGAKVLEVDG--NFDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEIADQLGWEVPD 219 (397)
T ss_pred EeCCCccHHHHHHHHhcCCEEEEECC--cHHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHHHHHhCCCCCC
Confidence 6887 799999999999999999984 6888989999988876 78999887 8988 89999999999999976 699
Q ss_pred EEEEecCcchhHHHHHHHHHhhC------CCcEEEEEeCCCCcccc----CCCC-------ccccccccCCCCC--c---
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKN------PNIKVYGIEPSESAVLN----GGQP-------GKHLIQGIGAGVI--P--- 136 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~------~~~~vigVe~~~~~~~~----~~~~-------~~~~~~gl~~~~~--~--- 136 (225)
+||+|+|+||+++|++++|+++. +.+|||+|||+++.++. .+.. ..+..+++..+.. .
T Consensus 220 ~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~~ 299 (397)
T PRK06260 220 RVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPKA 299 (397)
T ss_pred EEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHHH
Confidence 99999999999999999999875 34899999999997663 2221 1122344433211 1
Q ss_pred ccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcChh
Q 027277 137 PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 137 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~~~ 210 (225)
..+.+++.+..+.|+|+|+++++++|++++|+++||+||++++|++++.+++. .++++||+++|++|.|+.+.+
T Consensus 300 ~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l~~~g~i~~~~~VV~i~tG~glK~~~~~ 374 (397)
T PRK06260 300 LRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKLVEEGVIDKDERVVCITTGHLLKDPDAA 374 (397)
T ss_pred HHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCccCchHHH
Confidence 11335667889999999999999999999999999999999999999987754 357899999988899988753
No 53
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=3.4e-35 Score=255.70 Aligned_cols=204 Identities=20% Similarity=0.197 Sum_probs=166.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-----
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG----- 75 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~----- 75 (225)
||+++|+.|+++||.|||+|+.++. +|+++.+.+++++++++++|+++++ |+.+.++||+|+++||++|+++
T Consensus 182 mP~~a~~~K~~~ir~~GAeVv~~~~--~~~~a~~~A~~la~~~~~~~~~d~~-n~~n~~aG~~T~g~EI~eQl~~~~~~~ 258 (431)
T TIGR02035 182 MSADAKQWKKDKLRSKGVTVVEYES--DYGVAVEEGRKNADADPMCYFVDDE-NSRNLFLGYAVAASRLKKQFDKKGIVV 258 (431)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHhcCCeEECCCC-CcccHHhhHHHHHHHHHHhhhcccccc
Confidence 7999999999999999999999994 7899999999999887667888874 4555689999999999999952
Q ss_pred ---CccEEEEecCcchhHHHHHHHHHhh-CCCcEEEEEeCCCCcccc----CCC-----------CccccccccCCCCCc
Q 027277 76 ---KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVLN----GGQ-----------PGKHLIQGIGAGVIP 136 (225)
Q Consensus 76 ---~~d~iv~~~G~Gg~~aGi~~~~k~~-~~~~~vigVe~~~~~~~~----~~~-----------~~~~~~~gl~~~~~~ 136 (225)
.||+|++|+|+||+++|++++||++ ++++|||+|||++++++. .++ ...+.++||+.+..+
T Consensus 259 d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~ 338 (431)
T TIGR02035 259 DKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPS 338 (431)
T ss_pred ccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcc
Confidence 4789999999999999999999997 889999999999997642 222 123566888766432
Q ss_pred ---ccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcC-------C----C-CCCEEEEEecC
Q 027277 137 ---PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRP-------E----N-AGKLIVVIFPS 201 (225)
Q Consensus 137 ---~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~-------~----~-~~~~vv~v~~~ 201 (225)
+.+.++++|+.+.|+|+|++++++.|++++|+++|||||++++++.++.+.. . . ++.+.++.. |
T Consensus 339 ~~~~~~~~~~vd~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-t 417 (431)
T TIGR02035 339 GFVGRLMEPLLSGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRLLKYEDSYRYIEGRIGKNLNNATHVVWA-T 417 (431)
T ss_pred hhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHHHhhhhhHHHHcCccccccCCCeEEEEe-c
Confidence 2334568999999999999999999999999999999999999999887652 0 1 344566666 6
Q ss_pred CCCCCcC
Q 027277 202 AGERYLS 208 (225)
Q Consensus 202 gG~~~~~ 208 (225)
||..-.+
T Consensus 418 g~~~~p~ 424 (431)
T TIGR02035 418 GGGMVPE 424 (431)
T ss_pred CCCCCCH
Confidence 6654343
No 54
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.9e-35 Score=251.51 Aligned_cols=191 Identities=21% Similarity=0.130 Sum_probs=153.7
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDA 79 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~ 79 (225)
||+++|+.|+++|+.|||+|+.+++ +++++.+. +++. +.+|++++.||.+ ++||+|+++||++|+++ .||+
T Consensus 127 vP~~~~~~k~~~i~~~GA~vi~v~~--~~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~eql~~~~pD~ 198 (338)
T PRK06450 127 VPETASGGKLKQIESYGAEVVRVRG--SREDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAKDLDWKIPNY 198 (338)
T ss_pred EcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHHHcCCCCCCE
Confidence 7999999999999999999999985 56665443 4454 6788999999998 89999999999999974 5999
Q ss_pred EEEecCcchhHHHHHHHHHhhCC------CcEEEEEeCCCCccccC----CCC-----ccccccccCCCCCcc-----cc
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNG----GQP-----GKHLIQGIGAGVIPP-----VL 139 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~------~~~vigVe~~~~~~~~~----~~~-----~~~~~~gl~~~~~~~-----~~ 139 (225)
||+|+|+||+++|++++|+++.+ .+|||+|||++++++.. ... ..+..++|..+..+. ..
T Consensus 199 vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~ 278 (338)
T PRK06450 199 VFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKA 278 (338)
T ss_pred EEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHH
Confidence 99999999999999999999864 38999999999876641 111 123345554332111 12
Q ss_pred cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCc
Q 027277 140 DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYL 207 (225)
Q Consensus 140 ~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~ 207 (225)
.++. +..+.|+|+|+++++++|++ +|+++||+||+++||++++ ++++||+++|++|.|.+
T Consensus 279 i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l------~~~~vv~vltG~glK~~ 338 (338)
T PRK06450 279 LSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY------SVNDSVLVLTGSGLKVL 338 (338)
T ss_pred HHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC------CCCCEEEEeCCCCccCC
Confidence 2344 78999999999999999987 6999999999999999885 24689999989999864
No 55
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=3.8e-35 Score=248.93 Aligned_cols=198 Identities=20% Similarity=0.247 Sum_probs=160.3
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCC-CC-CChHhhHhhhHHHHHHhhCCCcc
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NP-ANPEIHYETTGPEIWNDSGGKVD 78 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~g~~t~~~Ei~~Ql~~~~d 78 (225)
||+++++.|+++|+.|||+|+.+++ +++++.+.+++++++. ++|+++|++ |+ .+ ++||+|+++||++|++..||
T Consensus 93 vp~~~~~~~~~~l~~~GA~V~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~-~~G~~t~a~Ei~~ql~~~~D 168 (319)
T PRK06381 93 IPRSYSNSRVKEMEKYGAEIIYVDG--KYEEAVERSRKFAKEN-GIYDANPGSVNSVVD-IEAYSAIAYEIYEALGDVPD 168 (319)
T ss_pred ECCCCCHHHHHHHHHcCCEEEEcCC--CHHHHHHHHHHHHHHc-CcEecCCCCCCcchH-hhhHHHHHHHHHHHhCCCCC
Confidence 6899999999999999999999995 5788888999988875 788899986 76 45 78999999999999975799
Q ss_pred EEEEecCcchhHHHHHHHHHhh------CCCcEEEEEeCCCCcccc----CCCCc-----cccc-c-ccCCCCC------
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEK------NPNIKVYGIEPSESAVLN----GGQPG-----KHLI-Q-GIGAGVI------ 135 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~------~~~~~vigVe~~~~~~~~----~~~~~-----~~~~-~-gl~~~~~------ 135 (225)
+||+|+|+|||++|++++||++ ++.+||++|||.+++++. .+... ...+ + .+..+..
T Consensus 169 ~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 248 (319)
T PRK06381 169 AVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFD 248 (319)
T ss_pred EEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCC
Confidence 9999999999999999999998 789999999999986553 12111 0011 1 0111110
Q ss_pred ---cccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 027277 136 ---PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 204 (225)
Q Consensus 136 ---~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~ 204 (225)
...+..++.++.|.|+|+|+++++++|+++|||++||++|+++++++++.+++.. +++||+++ |||.
T Consensus 249 ~~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~~~~~~~-~~~vv~i~-tGg~ 318 (319)
T PRK06381 249 GDNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGV-NDNVVAVI-TGRR 318 (319)
T ss_pred HHHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHHHHcCCC-CCcEEEEe-cCCC
Confidence 0113456788999999999999999999999999999999999999999877643 36788887 7774
No 56
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=1.8e-35 Score=255.49 Aligned_cols=185 Identities=19% Similarity=0.202 Sum_probs=156.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC---C-
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG---K- 76 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~---~- 76 (225)
||+++|+.|+++||+|||+|+.++ .+++++.+.++++++++++++|++|++++.. ++||+|+++||++|+++ +
T Consensus 164 vP~~~~~~K~~~ira~GAeVv~v~--~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~v 240 (404)
T cd06447 164 MSADAKQWKKDKLRSKGVTVVEYE--TDYSKAVEEGRKQAAADPMCYFVDDENSRDL-FLGYAVAASRLKAQLAELGIKV 240 (404)
T ss_pred ECCCCcHHHHHHHHHCCCEEEEEC--CCHHHHHHHHHHHHHHCCCeEeCCCCCchhH-HhhHHHHHHHHHHHhhhccCcc
Confidence 799999999999999999999998 4688999999999988766789999766665 89999999999999952 2
Q ss_pred ----ccEEEEecCcchhHHHHHHHHHhh-CCCcEEEEEeCCCCcccc----CCCC-----------ccccccccCCCCC-
Q 027277 77 ----VDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVLN----GGQP-----------GKHLIQGIGAGVI- 135 (225)
Q Consensus 77 ----~d~iv~~~G~Gg~~aGi~~~~k~~-~~~~~vigVe~~~~~~~~----~~~~-----------~~~~~~gl~~~~~- 135 (225)
||+||+|+|+|||++|++++||++ .|+++||+|||++++++. .+.. ..+.++||+.+..
T Consensus 241 D~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~ 320 (404)
T cd06447 241 DAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPS 320 (404)
T ss_pred ccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcc
Confidence 568999999999999999999997 788999999999987652 2211 2345577765532
Q ss_pred --cccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcC
Q 027277 136 --PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRP 188 (225)
Q Consensus 136 --~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~ 188 (225)
.+.+.++++|+.+.|+|+|+.++++.|++++|+++|||||++++|++++.++.
T Consensus 321 ~~~~~~~~~~vd~~v~Vsd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~~~~~ 375 (404)
T cd06447 321 GLVGKLMEPLLSGIYTVEDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQVLSEA 375 (404)
T ss_pred hhHHHHHHHhCCcEEEECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHHHHhh
Confidence 23344678999999999999999999999999999999999999999988653
No 57
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=9.7e-35 Score=250.07 Aligned_cols=204 Identities=17% Similarity=0.211 Sum_probs=166.8
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeC-----CCCC--CCChHhhHhhhHHHHHHhh
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILG-----QFEN--PANPEIHYETTGPEIWNDS 73 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~Ei~~Ql 73 (225)
||+++|+.|+.+|+.|||+|+++++ +++++.+.++++++++ ++++++ +|++ |.. ++||+|+++||++|+
T Consensus 124 vP~~~~~~k~~~i~~~GAeVi~v~~--~~~~a~~~a~~~~~~~-g~~~~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl 199 (376)
T TIGR01747 124 MPKGSAQERVENILNLGAECTITDM--NYDDTVRLAMQMAQQH-GWVVVQDTAWEGYEKIPTWI-MQGYATLADEAVEQL 199 (376)
T ss_pred ECCCCCHHHHHHHHhCCCEEEEECC--CHHHHHHHHHHHHHhc-CcEEeccccccccccCCchH-HHHHHHHHHHHHHHh
Confidence 7999999999999999999999984 6889999999988876 688887 4655 554 899999999999999
Q ss_pred CC----CccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEEeCCCCcccc----C--CCC------ccccccccCCCC-
Q 027277 74 GG----KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIEPSESAVLN----G--GQP------GKHLIQGIGAGV- 134 (225)
Q Consensus 74 ~~----~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigVe~~~~~~~~----~--~~~------~~~~~~gl~~~~- 134 (225)
+. .||+||+|+|+||+++|++.+|++..+ .++|++|||++++++. . +++ ..+.+++|..+.
T Consensus 200 ~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~ga~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~ 279 (376)
T TIGR01747 200 REMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDKADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEP 279 (376)
T ss_pred hccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCCCCHHHHHHHhcCCCeEEcCCCccccccccccCCc
Confidence 62 699999999999999999999987643 3799999999998874 1 331 124557776543
Q ss_pred --CcccccccCcCeEEEeCHHHHHHHHHHHHHhc----CCeecchHHHHHHHHHHH---------hhcCCC-CCCEEEEE
Q 027277 135 --IPPVLDVAMLDEVITVSSEEAIETSKLLALKE----GLLVGISSGAAAAAAIRV---------AKRPEN-AGKLIVVI 198 (225)
Q Consensus 135 --~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~e----Gi~~epssgaalaa~~~~---------~~~~~~-~~~~vv~v 198 (225)
.++.+.+++.+..+.|+|+|+.++++.|++.. ++++||+++++++++... .+++.. ++++||++
T Consensus 280 ~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epaga~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi 359 (376)
T TIGR01747 280 NPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESGAVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVI 359 (376)
T ss_pred chHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCchHHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEE
Confidence 35566688899999999999999999999855 599999999999888833 333333 36788888
Q ss_pred ecCCCCCCcCh
Q 027277 199 FPSAGERYLST 209 (225)
Q Consensus 199 ~~~gG~~~~~~ 209 (225)
+ ||||.+.++
T Consensus 360 ~-t~gn~d~~~ 369 (376)
T TIGR01747 360 S-TEGDTDPDH 369 (376)
T ss_pred e-CCCCCCHHH
Confidence 8 999998886
No 58
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=1.5e-34 Score=254.73 Aligned_cols=201 Identities=18% Similarity=0.207 Sum_probs=165.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||+++|+.|+++|+.|||+|+.++ .+++++.+.++++++++ ++|++++++||.+ ++||+|+++||++|++ ||+|
T Consensus 142 vp~~~~~~k~~~~~~~GA~vi~v~--~~~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq~~--pD~v 215 (442)
T PRK05638 142 VPRKVDKGKLIQMIAFGAKIIRYG--ESVDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEEIN--PTHV 215 (442)
T ss_pred EeCCCCHHHHHHHHhcCcEEEEEC--CCHHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHHHC--cCEE
Confidence 799999999999999999999998 46889999999988776 7999999999998 8999999999999995 9999
Q ss_pred EEecCcchhHHHHHHHHHhhCC------CcEEEEEeCCCCcccc----CCCC--ccccccccCCCCCc--c---cccccC
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLN----GGQP--GKHLIQGIGAGVIP--P---VLDVAM 143 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~------~~~vigVe~~~~~~~~----~~~~--~~~~~~gl~~~~~~--~---~~~~~~ 143 (225)
|+|+|+||+++|++++|+++.+ .+||++|||++++++. .+.. ..+...++..+... . .+.+++
T Consensus 216 v~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~~~~t~a~gl~~~~p~~~~~~~~~i~~~ 295 (442)
T PRK05638 216 IVPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEYVSEAIKES 295 (442)
T ss_pred EEeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCCCCCceeeeEeeCCCCCHHHHHHHHHHh
Confidence 9999999999999999999865 3799999999987664 2211 12233454322111 1 123456
Q ss_pred cCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcC
Q 027277 144 LDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLS 208 (225)
Q Consensus 144 ~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~ 208 (225)
.+..+.|+|+++.++++.++ ++||++||+||+++||++++.+++. .++++||+++|++|.|+.-
T Consensus 296 ~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~~~~g~i~~~~~Vv~i~tG~g~k~~~ 360 (442)
T PRK05638 296 GGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKLGEEGYIEKGDKVVLVVTGSGLKGYG 360 (442)
T ss_pred CCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCCCCCCC
Confidence 77889999999888888776 4899999999999999999988754 4578999999999999863
No 59
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=1.1e-33 Score=243.54 Aligned_cols=207 Identities=25% Similarity=0.297 Sum_probs=154.4
Q ss_pred CCCCCh---HHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHH-HHhC-CCeEEeCCC----CCCCChHhhHhhhHHHHH
Q 027277 1 MPSTYS---IERRIILRALGAEVYLADPA-VGFEGFVKKGEEI-LNRT-PNGYILGQF----ENPANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~~~---~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~~-~~~~-~~~~~~~~~----~~~~~~~~g~~t~~~Ei~ 70 (225)
||+..+ +.|+++|+.+||+|+.++.. ..++++...+.+. .++. +.+|+++++ .++.++++||+|+++||+
T Consensus 113 vp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ag~~t~~~EI~ 192 (365)
T cd06446 113 MGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVRDFQSVIGEEAK 192 (365)
T ss_pred EcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHHHhhhHHHHHHH
Confidence 465533 36788999999999999853 2356665444444 3332 234444332 123456899999999999
Q ss_pred HhhCC----CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCC--------CC----------------
Q 027277 71 NDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG--------QP---------------- 122 (225)
Q Consensus 71 ~Ql~~----~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~--------~~---------------- 122 (225)
+|+.+ .||+||+|+|+|||++|++++++. .+++|||+|||++++.+... ..
T Consensus 193 ~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 271 (365)
T cd06446 193 KQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGGTAGVLHGLKMYTLQDEDG 271 (365)
T ss_pred HHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCCCcceecchhhhccccccC
Confidence 99963 599999999999999999999887 46899999999998776421 11
Q ss_pred ----ccccccccCCCC-Cc--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEE
Q 027277 123 ----GKHLIQGIGAGV-IP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI 195 (225)
Q Consensus 123 ----~~~~~~gl~~~~-~~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~v 195 (225)
..+.+++++... .+ +.+..+++|+.+.|+|+|+++++++|+++|||++|||||+++++++++.++. .++++|
T Consensus 272 ~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaalAa~~~~~~~~-~~~~~V 350 (365)
T cd06446 272 QIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHAIAYAIKLAKKL-GKEKVI 350 (365)
T ss_pred CCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHHHHHHHHHHHhc-CCCCeE
Confidence 011223343221 11 1234567899999999999999999999999999999999999999998765 357899
Q ss_pred EEEecCCCCCCcCh
Q 027277 196 VVIFPSAGERYLST 209 (225)
Q Consensus 196 v~v~~~gG~~~~~~ 209 (225)
|+|+|++|+||+++
T Consensus 351 v~i~~g~G~k~~~~ 364 (365)
T cd06446 351 VVNLSGRGDKDLQT 364 (365)
T ss_pred EEEeCCCCcccccc
Confidence 99998889999986
No 60
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=8.9e-34 Score=245.62 Aligned_cols=204 Identities=16% Similarity=0.202 Sum_probs=162.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeC-----CCCC--CCChHhhHhhhHHHHHHhh
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILG-----QFEN--PANPEIHYETTGPEIWNDS 73 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~--~~~~~~g~~t~~~Ei~~Ql 73 (225)
||+++|+.|+++|+.|||+|+.++. +++++.+.++++++++ +++|++ +|+| +.. ++||+|+++||++|+
T Consensus 143 vP~~~~~~K~~~ir~~GAeVi~~~~--~~~~a~~~a~~~a~~~-g~~~v~~~~~~~~~~~~~~~-i~G~~Tig~EI~eQl 218 (396)
T TIGR03528 143 MPKGSAQIRLENIRAEGAECTITDL--NYDDAVRLAWKMAQEN-GWVMVQDTAWEGYEKIPTWI-MQGYGTLALEALEQL 218 (396)
T ss_pred EeCCCcHHHHHHHHhcCCEEEEECC--CHHHHHHHHHHHHHhc-CcEeeccccccccccCchHH-HHHHhHHHHHHHHHH
Confidence 7999999999999999999999984 6889999999998886 788885 5765 333 689999999999999
Q ss_pred C----CCccEEEEecCcchhHHHHHHHHHhh-CCC-cEEEEEeCCCCccccC------CCC------ccccccccCCC--
Q 027277 74 G----GKVDAFIAGIGTGGTVTGAGRFLKEK-NPN-IKVYGIEPSESAVLNG------GQP------GKHLIQGIGAG-- 133 (225)
Q Consensus 74 ~----~~~d~iv~~~G~Gg~~aGi~~~~k~~-~~~-~~vigVe~~~~~~~~~------~~~------~~~~~~gl~~~-- 133 (225)
+ ..||+||+|+|+||+++|++.+|++. .+. +||++|||++++++.. +++ ..+..+++..+
T Consensus 219 ~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p 298 (396)
T TIGR03528 219 KEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDAADCLYRSAIADDGKPHFVTGDMATIMAGLACGEP 298 (396)
T ss_pred hhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCCCchHHHHHHhcCCCEEEeCCCccceecccccCCc
Confidence 6 26999999999999999999999554 444 6999999999987742 221 12345666543
Q ss_pred -CCcccccccCcCeEEEeCHHHHHHHHHHHHH----hcCCeecchHHHHHHHHHHH---------hhcCC-CCCCEEEEE
Q 027277 134 -VIPPVLDVAMLDEVITVSSEEAIETSKLLAL----KEGLLVGISSGAAAAAAIRV---------AKRPE-NAGKLIVVI 198 (225)
Q Consensus 134 -~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~----~eGi~~epssgaalaa~~~~---------~~~~~-~~~~~vv~v 198 (225)
..++.+.++++|+.+.|+|+|+.++++.|++ ++++++||++|+++|++..+ .+++. .++++||+|
T Consensus 299 ~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsga~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i 378 (396)
T TIGR03528 299 NTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESGAVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLI 378 (396)
T ss_pred cHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcHHHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEE
Confidence 2234455688999999999999999999998 67999999999999555322 22222 246788888
Q ss_pred ecCCCCCCcCh
Q 027277 199 FPSAGERYLST 209 (225)
Q Consensus 199 ~~~gG~~~~~~ 209 (225)
+ ||||.+++.
T Consensus 379 ~-tggn~d~~~ 388 (396)
T TIGR03528 379 S-TEGDTDPDN 388 (396)
T ss_pred E-CCCCCCHHH
Confidence 8 999998885
No 61
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=3.2e-33 Score=228.73 Aligned_cols=163 Identities=47% Similarity=0.679 Sum_probs=149.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDA 79 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~ 79 (225)
||+++++.|+++|+.+||+|+.+++ +++++.+.+++++++.++++|++||.|+.+ +.||.++++||++|+++ .||+
T Consensus 80 ~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d~ 156 (244)
T cd00640 80 MPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPDA 156 (244)
T ss_pred ECCCCCHHHHHHHHHCCCEEEEECC--CHHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCCE
Confidence 6889999999999999999999995 478899999999988558999999999988 88999999999999976 5999
Q ss_pred EEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCCccccccccCCCCCcccccccCcCeEEEeCHHHHHHHH
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETS 159 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~v~d~e~~~a~ 159 (225)
||+|+|+||+++|++.+||+.+|.+||++||| +.+.|+|+|+++++
T Consensus 157 ivvp~GtGg~~~G~~~~~~~~~~~~~ii~v~~----------------------------------~~~~v~d~~~~~a~ 202 (244)
T cd00640 157 VVVPVGGGGNIAGIARALKELLPNVKVIGVEP----------------------------------EVVTVSDEEALEAI 202 (244)
T ss_pred EEEecCccHHHHHHHHHHHHhCCCCEEEEEee----------------------------------eEEEECHHHHHHHH
Confidence 99999999999999999999999999999998 78999999999999
Q ss_pred HHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecC
Q 027277 160 KLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPS 201 (225)
Q Consensus 160 ~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~ 201 (225)
++|++++|+++||+||++++++.++.++. .+++++|+++|+
T Consensus 203 ~~l~~~~gi~~~pssa~~~aa~~~~~~~~-~~~~~vv~v~tg 243 (244)
T cd00640 203 RLLAREEGILVEPSSAAALAAALKLAKKL-GKGKTVVVILTG 243 (244)
T ss_pred HHHHHHcCceECHhHHHHHHHHHHHHHhc-CCCCEEEEEeCC
Confidence 99999999999999999999999998775 356788888843
No 62
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=4.6e-33 Score=237.09 Aligned_cols=204 Identities=21% Similarity=0.186 Sum_probs=163.0
Q ss_pred CCCC-ChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCC-CCCChHhhHhhhHHHHHHhhCC-Cc
Q 027277 1 MPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NPANPEIHYETTGPEIWNDSGG-KV 77 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~~Ql~~-~~ 77 (225)
||++ +++.|+.+++.|||+|+.+++ +++++.+.++++++++ +++++++++ +|.+ +.||.|+++||++|+++ .|
T Consensus 101 ~p~~~~s~~k~~~~~~~GA~Vi~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~-~~g~~t~~~Ei~~q~~~~~~ 176 (328)
T TIGR00260 101 YPAGKISLGKLAQALGYNAEVVAIDG--NFDDAQRLVKQLFGDK-EALGLNSVNSIPYR-LEGQKTYAFEAVEQLGWEAP 176 (328)
T ss_pred ECCCCCCHHHHHHHHhcCcEEEEecC--CHHHHHHHHHHHHhhc-CeeecccCCCCCeE-eeeehhHHHHHHHHhCCCCC
Confidence 6888 999999999999999999994 6889989999988775 566666543 2777 78999999999999974 79
Q ss_pred cEEEEecCcchhHHHHHHHHHhhC-C----CcEEEEEeCCCCcccc-----CCCCc-----cccccccCCCCC-----cc
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKN-P----NIKVYGIEPSESAVLN-----GGQPG-----KHLIQGIGAGVI-----PP 137 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~-~----~~~vigVe~~~~~~~~-----~~~~~-----~~~~~gl~~~~~-----~~ 137 (225)
|+||+|+|+||+++|++.+|+++. - .++|++|||++++++. .++.. .+..++++.+.. ..
T Consensus 177 d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~p~~~~~~~ 256 (328)
T TIGR00260 177 DKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGNPANWERAL 256 (328)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCCCCCHHHHH
Confidence 999999999999999999999851 1 3499999999985442 22221 223345433321 11
Q ss_pred cccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCC-CCCCEEEEEecCCCCCCcC
Q 027277 138 VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLS 208 (225)
Q Consensus 138 ~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~-~~~~~vv~v~~~gG~~~~~ 208 (225)
.+.+++.++.+.|+|+|+++++++|++++|+++||+||+++++++++.+++. .+++++|+++|.+|.|+.+
T Consensus 257 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~~~~~~~~~~~~vv~i~tG~~~k~~~ 328 (328)
T TIGR00260 257 ELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVEKGTADPAERVVCALTGNGLKDPE 328 (328)
T ss_pred HHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHHHhCCCCCCCCcEEEEecCCCCCCCC
Confidence 2235678999999999999999999999999999999999999999887643 3578899999888988754
No 63
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=1.7e-33 Score=237.58 Aligned_cols=201 Identities=21% Similarity=0.251 Sum_probs=152.1
Q ss_pred CCCCCh--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHH-HHHhCCCeEEe-CCCC-CCCChHhhHhhhHH
Q 027277 1 MPSTYS--------IERRIILRALGAEVYLADPAV--GFEGFVKKGEE-ILNRTPNGYIL-GQFE-NPANPEIHYETTGP 67 (225)
Q Consensus 1 vP~~~~--------~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~-~~~~~~~~~~~-~~~~-~~~~~~~g~~t~~~ 67 (225)
||+++| ..|+++|+.|||+|+.++... ...++.+.+.+ +.++.+..|++ +++. |+.+ ..||.+++.
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~t~~~ 162 (307)
T cd06449 84 QENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-GLGYVGFVL 162 (307)
T ss_pred ecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-HHHHHHHHH
Confidence 566666 478999999999999998632 11223333333 33332233544 4443 8888 889999999
Q ss_pred HHHHhhCC---CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCC---ccccccccC--CCCCcccc
Q 027277 68 EIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQGIG--AGVIPPVL 139 (225)
Q Consensus 68 Ei~~Ql~~---~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~gl~--~~~~~~~~ 139 (225)
||++|+++ .||+||+|+|+|||++|++++||++++++|||+|+|.++..+..... ..+.+.+++ .+..+..+
T Consensus 163 Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 242 (307)
T cd06449 163 EIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLRIAQAKLAEEGLEVKEEDVVL 242 (307)
T ss_pred HHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHHHHHHHHHHcCCCCCcccEEE
Confidence 99999964 69999999999999999999999999999999999999876532110 002222222 22335566
Q ss_pred cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCC-CCCEEEEEecCCC
Q 027277 140 DVAMLDEVITVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAG 203 (225)
Q Consensus 140 ~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG 203 (225)
..+++++.+.|+|+|++++++++++++||++|| |||+++++++++.++... ++++||+++ |||
T Consensus 243 ~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~~~~~~~~~~~~vv~i~-TGG 307 (307)
T cd06449 243 DDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDLVRNGEFKEGSKVLFIH-LGG 307 (307)
T ss_pred ecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCC
Confidence 778899999999999999999999999999999 899999999999887543 466777777 776
No 64
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=2.7e-32 Score=235.70 Aligned_cols=208 Identities=23% Similarity=0.274 Sum_probs=156.5
Q ss_pred CCCCChH---HHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCeEEeC-CC----CCCCChHhhHhhhHHHHH
Q 027277 1 MPSTYSI---ERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYILG-QF----ENPANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~~~~---~k~~~~~~~GA~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~-~~----~~~~~~~~g~~t~~~Ei~ 70 (225)
||+..++ .|+.+||.|||+|+.++. ...++++.+.+.+ ++++.++.+|+. ++ ..|.++..||++++.|+.
T Consensus 141 m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~tig~Ei~ 220 (402)
T PRK13028 141 MGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQSVIGEEAR 220 (402)
T ss_pred ECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhHHHHHHHH
Confidence 5665333 568899999999999984 3467888887755 455433556652 21 124444579999999999
Q ss_pred HhhC----CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC--------CccccCCCCc---------------
Q 027277 71 NDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE--------SAVLNGGQPG--------------- 123 (225)
Q Consensus 71 ~Ql~----~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~--------~~~~~~~~~~--------------- 123 (225)
+|+. ..||+||+|+|+||+++|++.+|++ .+++|||||||.+ ++++..++++
T Consensus 221 ~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~~l~~~~g 299 (402)
T PRK13028 221 EQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSYVLQDEDG 299 (402)
T ss_pred HHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceecccceeeccccCC
Confidence 9973 3599999999999999999999986 4889999999998 5556544321
Q ss_pred -----cccccccCCCCC-cc--cccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEE
Q 027277 124 -----KHLIQGIGAGVI-PP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI 195 (225)
Q Consensus 124 -----~~~~~gl~~~~~-~~--~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~v 195 (225)
.+...||..+.+ |. .+.....++.+.|+|+|++++++.|+++|||+++++||++++++++++++. .++++|
T Consensus 300 ~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~a~~l-~~~~~V 378 (402)
T PRK13028 300 EPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKLAPEL-SKDETI 378 (402)
T ss_pred CcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHhhhhc-CCCCeE
Confidence 112244432221 21 122345678999999999999999999999999999999999999988763 367899
Q ss_pred EEEecCCCCCCcChh
Q 027277 196 VVIFPSAGERYLSTA 210 (225)
Q Consensus 196 v~v~~~gG~~~~~~~ 210 (225)
|+++|++|+||++++
T Consensus 379 Vv~lsG~G~kd~~~~ 393 (402)
T PRK13028 379 LVNLSGRGDKDIDYV 393 (402)
T ss_pred EEEECCCCccCHHHH
Confidence 999977799999974
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=1.9e-32 Score=237.12 Aligned_cols=207 Identities=21% Similarity=0.278 Sum_probs=152.4
Q ss_pred CCCC-ChH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHHHhCCCeEEe-CCCCC----CCChHhhHhhhHHHHH
Q 027277 1 MPST-YSI--ERRIILRALGAEVYLADPA-VGFEGFV-KKGEEILNRTPNGYIL-GQFEN----PANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~-~~~--~k~~~~~~~GA~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~Ei~ 70 (225)
||+. ++. .|+++|+.|||+|+.++.. +.++++. +.+++++++.++.+|+ +++.+ +.++.+||+|+++||+
T Consensus 129 ~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~~~~t~g~Ei~ 208 (385)
T TIGR00263 129 MGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRDFQSVIGEEAK 208 (385)
T ss_pred ecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHHHhhHHHHHHH
Confidence 5664 443 5788999999999999853 3466664 4444556554455555 44432 2444689999999999
Q ss_pred HhhC----CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc--------cccCCCCc---------------
Q 027277 71 NDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG--------------- 123 (225)
Q Consensus 71 ~Ql~----~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~~--------------- 123 (225)
+|+. ..||+||+|+|+|||++|++.+|.. .|++|||||||+++. .+..+.+.
T Consensus 209 ~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 287 (385)
T TIGR00263 209 EQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAATLAKGSPGVLHGMKTYLLQDEDG 287 (385)
T ss_pred HHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhhhhcCCeeEecCcccccccCCCC
Confidence 9983 2489999999999999999998855 689999999999862 22222211
Q ss_pred -----cccccccCCCCC-c--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEE
Q 027277 124 -----KHLIQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI 195 (225)
Q Consensus 124 -----~~~~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~v 195 (225)
.+..++++.... | +.+.....++.+.|+|+|+++++++|+++|||+++|+||++++++++++++. .++++|
T Consensus 288 ~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~ssaaalaa~~~~~~~l-~~~~~V 366 (385)
T TIGR00263 288 QILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALESSHALAHLEKIAPTL-PKDQIV 366 (385)
T ss_pred cccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechHHHHHHHHHHHHHHhC-CCCCeE
Confidence 011233322211 1 1233455778999999999999999999999999999999999999987663 367899
Q ss_pred EEEecCCCCCCcCh
Q 027277 196 VVIFPSAGERYLST 209 (225)
Q Consensus 196 v~v~~~gG~~~~~~ 209 (225)
|+++|++|++|+++
T Consensus 367 v~i~~g~G~~d~~~ 380 (385)
T TIGR00263 367 VVNLSGRGDKDIFT 380 (385)
T ss_pred EEEeCCCCcCCHHH
Confidence 99998889999986
No 66
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=6.6e-33 Score=240.16 Aligned_cols=205 Identities=15% Similarity=0.060 Sum_probs=164.9
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
||++++..+...++.+||+|+.+++ +++++.+.++++++++ +++..++++||.. ++|++|+++||++|++..||+|
T Consensus 147 vP~~~~~~~~~~~~~~ga~vv~v~g--~~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~Ei~eql~~~PD~V 222 (398)
T TIGR03844 147 VPKSSADRLWTTEPASSVLLVTVDG--DYTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVMLDAAVTIGSLPDHY 222 (398)
T ss_pred ECCChHHHHHHHhhCCcEEEEECCC--CHHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHHHHHHHcCCCCCEE
Confidence 6888765555445889999999984 6899999999998876 6655566678886 8999999999999997449999
Q ss_pred EEecCcchhHHHHHHHHHhhC-------CCcEEEEEeCCCCcccc----CCCCc---------------cccccccCCCC
Q 027277 81 IAGIGTGGTVTGAGRFLKEKN-------PNIKVYGIEPSESAVLN----GGQPG---------------KHLIQGIGAGV 134 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~-------~~~~vigVe~~~~~~~~----~~~~~---------------~~~~~gl~~~~ 134 (225)
|+|+|+|+++.|++.+++++. .-||+++||+++++++. .+... .+..+++..+.
T Consensus 223 vvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~l~i~~ 302 (398)
T TIGR03844 223 FQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDVLTNRT 302 (398)
T ss_pred EEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecceeeeCC
Confidence 999999988999999998742 34799999999998764 23211 12345554332
Q ss_pred Ccc-------cccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCC-CCCEEEEEecCCCCCC
Q 027277 135 IPP-------VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGERY 206 (225)
Q Consensus 135 ~~~-------~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG~~~ 206 (225)
.+. ...+++.+..+.|+|+|+.++++.|++++|+++||+||+++||++++.+++.. ++++||+++|++|.|+
T Consensus 303 p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~~~~g~i~~~~~Vv~vlTG~glK~ 382 (398)
T TIGR03844 303 PPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKAVESGFIGPDDDILLNITGGGYKR 382 (398)
T ss_pred CCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHHHHhCCCCCCCeEEEEECCcchhh
Confidence 222 23467889999999999999999999999999999999999999999877644 6789999999999998
Q ss_pred cCh
Q 027277 207 LST 209 (225)
Q Consensus 207 ~~~ 209 (225)
+..
T Consensus 383 ~~~ 385 (398)
T TIGR03844 383 LRE 385 (398)
T ss_pred HHh
Confidence 864
No 67
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=4.4e-33 Score=237.81 Aligned_cols=195 Identities=19% Similarity=0.219 Sum_probs=149.5
Q ss_pred HHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCC-eEEeCCCCC--CCChHhhHhhhHHHHHHh---hCCCccE
Q 027277 8 ERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRTPN-GYILGQFEN--PANPEIHYETTGPEIWND---SGGKVDA 79 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~~~--~~~~~~g~~t~~~Ei~~Q---l~~~~d~ 79 (225)
.|+.+++.|||+|++++... .+.++.+.+.+..++..+ .|.++++.+ +.. ..||.++++||++| ++++||+
T Consensus 114 ~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~G~~~~a~Ei~~q~~~~~~~~d~ 192 (337)
T PRK12390 114 GNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDHPLG-GLGFVGFAEEVRAQEAELGFKFDY 192 (337)
T ss_pred ccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCCCcc-cHHHHHHHHHHHHHHHhcCCCCCE
Confidence 37779999999999998631 234666677776666334 444666543 443 67899999999998 4447999
Q ss_pred EEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC---CccccccccCCCC--Cc--ccccccCcCeEEEeCH
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAGV--IP--PVLDVAMLDEVITVSS 152 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~gl~~~~--~~--~~~~~~~~~~~~~v~d 152 (225)
||+|+|+|||++|++.+||+.+|++|||||+|+++..+...+ ...+.+++++.+. .+ +.+..+++++.|.|+|
T Consensus 193 vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd 272 (337)
T PRK12390 193 IVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQVLRIARNTAELVELGRDITEDDVVLDERYAGPEYGLPN 272 (337)
T ss_pred EEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHHHHHHHHHHHHhCCCCCCChhhEEEecccccCCCCCCC
Confidence 999999999999999999999999999999999987664321 1123334444332 12 2356788999999999
Q ss_pred HHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCC-CCCEEEEEecCCCC
Q 027277 153 EEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGE 204 (225)
Q Consensus 153 ~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG~ 204 (225)
+|++++++++++++||++|| |||+++++++++.+++.. ++++||+++ |||.
T Consensus 273 ~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~~~~g~~~~~~~vv~~h-tgg~ 325 (337)
T PRK12390 273 EGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDLVRKGEFPEGSKVLYAH-LGGV 325 (337)
T ss_pred HHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHhcCCCCCCCeEEEEe-CCCh
Confidence 99999999999999999999 699999999999987654 455655555 8985
No 68
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=4.7e-33 Score=235.37 Aligned_cols=202 Identities=19% Similarity=0.160 Sum_probs=152.2
Q ss_pred CCCCC-hHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH----hCC-CeEEeCCCCCCCChHhhHhhhHHHHHHhhC
Q 027277 1 MPSTY-SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN----RTP-NGYILGQFENPANPEIHYETTGPEIWNDSG 74 (225)
Q Consensus 1 vP~~~-~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~ 74 (225)
||++. +..|..+++.|||+|+++++. ++++..+.+.++++ +.+ .+++++++.|+.+ ..|+.++++||++|++
T Consensus 88 vp~~~~~~~~~~~~~~~Ga~v~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~~~EI~~q~~ 165 (311)
T TIGR01275 88 LREKEELNGNLLLDKLMGAETRVYSAE-EYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEAVLEIATQLE 165 (311)
T ss_pred ecCCccCCCCHHHHHHcCCEEEEECch-hhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHHHHHHHHHHh
Confidence 57664 456777889999999999852 34444444444433 221 2445577788887 6778889999999996
Q ss_pred C--CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC---CccccccccCCC-CCcccccccCcCeEE
Q 027277 75 G--KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAG-VIPPVLDVAMLDEVI 148 (225)
Q Consensus 75 ~--~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~ 148 (225)
+ .||+||+|+|||||++|++++||+++++++||||+|+.+.+..... ...+.+++++.+ ...+.+..++.+..+
T Consensus 166 ~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 245 (311)
T TIGR01275 166 SEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKFVNLVKEIAEGLEVKASEVIPELDDYSGPGY 245 (311)
T ss_pred cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHHHHHHHHHHHHhCCCCCCCEEEECCcccCcC
Confidence 3 6999999999999999999999999999999999987653211100 112334566543 223445567888899
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 205 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~ 205 (225)
.|+|+|+++++++|++++|+++|| |||+++++++++.++...++++||+++ ||||.
T Consensus 246 ~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~~~~~~~~~~~vv~i~-tGG~~ 302 (311)
T TIGR01275 246 GKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDLIRKGELGEKGILFIH-TGGIS 302 (311)
T ss_pred CCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHHHHhCCCCCCCEEEEE-CCCcc
Confidence 999999999999999999999999 799999999998876544566777777 88874
No 69
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=5.4e-33 Score=236.73 Aligned_cols=204 Identities=22% Similarity=0.263 Sum_probs=155.7
Q ss_pred CCCCChH--------HHHHHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCCeE-EeCCCCCCCChHhhHhhhHHHHH
Q 027277 1 MPSTYSI--------ERRIILRALGAEVYLADPAVGFE-GFVKKGEEILNRTPNGY-ILGQFENPANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~~~~--------~k~~~~~~~GA~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~Ei~ 70 (225)
||+++++ .|+.+|+.|||+|+.+++.++.. .+.+.++++.++.+..| +..++.|+.+ ..||.+++.||+
T Consensus 96 vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~-~~g~~~~~~Ei~ 174 (331)
T PRK03910 96 LENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALG-ALGYVACALEIA 174 (331)
T ss_pred EcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchh-HHHHHHHHHHHH
Confidence 5777665 56689999999999998643232 23455666665543233 3456678887 678899999999
Q ss_pred HhhCC---CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCC---ccccccccCCC----CCccccc
Q 027277 71 NDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP---GKHLIQGIGAG----VIPPVLD 140 (225)
Q Consensus 71 ~Ql~~---~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~---~~~~~~gl~~~----~~~~~~~ 140 (225)
+|+++ .||+||+|+|||||++|++++||+++++++||||||+++..+..... .....++++.+ ...+.+.
T Consensus 175 ~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~ 254 (331)
T PRK03910 175 QQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKVAKLAQATAELLGLPTEIPRADIRLW 254 (331)
T ss_pred HHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHcCCCccCCcccEEEE
Confidence 99963 69999999999999999999999999999999999998865432111 11222344332 1123456
Q ss_pred ccCcCeEEEeCHHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCC-CCCEEEEEecCCCCCC
Q 027277 141 VAMLDEVITVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGERY 206 (225)
Q Consensus 141 ~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG~~~ 206 (225)
++++++.+.|+|+|+++++++|++++||++|| |||+++++++++.++... ++++||+++ ||||..
T Consensus 255 ~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~~~~~~~~~~~~Vv~i~-tGG~~~ 321 (331)
T PRK03910 255 DDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDLIRQGRFKKGGNVLFIH-TGGAPA 321 (331)
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHcCCCCCCCeEEEEE-CCChHh
Confidence 78899999999999999999999999999999 699999999999876544 467777776 999864
No 70
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.1e-31 Score=233.62 Aligned_cols=209 Identities=23% Similarity=0.280 Sum_probs=151.1
Q ss_pred CCCC---ChHHHHHHHHHcCCEEEEeCCCCChHH------------------HHHHHHHHHHhCC-CeEEeCCCCCCCCh
Q 027277 1 MPST---YSIERRIILRALGAEVYLADPAVGFEG------------------FVKKGEEILNRTP-NGYILGQFENPANP 58 (225)
Q Consensus 1 vP~~---~~~~k~~~~~~~GA~v~~~~~~~~~~~------------------~~~~a~~~~~~~~-~~~~~~~~~~~~~~ 58 (225)
||+. .++.|+.+||.|||+|+.++.. +++ ++..+.+.+++++ ..|+++++.|+ .
T Consensus 148 mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~--~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~n~--~ 223 (419)
T TIGR01415 148 MVRVSFNQKPYRKYLMELYGAEVIPSPSE--FTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVLNH--V 223 (419)
T ss_pred EeCCCcccCHHHHHHHHHcCCEEEEECCc--hhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCCcH--H
Confidence 4553 3668999999999999999853 222 2456666666543 45666666553 3
Q ss_pred HhhHhhhHHHHHHhhCC---CccEEEEecCcchhHHHHHHHHHhh----CCCcEEEEEeCCCCccccCCCC---------
Q 027277 59 EIHYETTGPEIWNDSGG---KVDAFIAGIGTGGTVTGAGRFLKEK----NPNIKVYGIEPSESAVLNGGQP--------- 122 (225)
Q Consensus 59 ~~g~~t~~~Ei~~Ql~~---~~d~iv~~~G~Gg~~aGi~~~~k~~----~~~~~vigVe~~~~~~~~~~~~--------- 122 (225)
..||.++|+||++|++. .||+||+|+|+||+++|++.+|+.. .+++|||+|||++++++..+..
T Consensus 224 ~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~~~~~ 303 (419)
T TIGR01415 224 LLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFGDTAG 303 (419)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCccccccccccc
Confidence 78999999999999964 4999999999999999999988432 2579999999999987764320
Q ss_pred -cc-ccccccCCCCCcccc-----------------cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHH
Q 027277 123 -GK-HLIQGIGAGVIPPVL-----------------DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIR 183 (225)
Q Consensus 123 -~~-~~~~gl~~~~~~~~~-----------------~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~ 183 (225)
.+ ..+.+++..+.|..+ .++.+.+.+.|+|+|+++++++|+++|||+++|+||++++|+++
T Consensus 304 ~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~alaaai~ 383 (419)
T TIGR01415 304 LTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAID 383 (419)
T ss_pred CCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Confidence 11 122344443333221 13444578899999999999999999999999999999999999
Q ss_pred HhhcCCCCCC--EEEEEecCC-CCCCcChhhchhHH
Q 027277 184 VAKRPENAGK--LIVVIFPSA-GERYLSTALFESIR 216 (225)
Q Consensus 184 ~~~~~~~~~~--~vv~v~~~g-G~~~~~~~~~~~~~ 216 (225)
++++....++ ++|+++ || |+++++ .|+++.
T Consensus 384 ~a~~~~~~~~~~vvv~~l-sG~G~~d~~--~y~~~~ 416 (419)
T TIGR01415 384 EARKCRETGEEKVILFNL-SGHGLLDLK--AYAKYL 416 (419)
T ss_pred HHHhcCcCCCCeEEEEEc-CCCCcCCHH--HHHHHh
Confidence 8877543333 344445 44 776655 566554
No 71
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=1.2e-31 Score=233.73 Aligned_cols=209 Identities=21% Similarity=0.242 Sum_probs=150.5
Q ss_pred ChHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHH
Q 027277 5 YSIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 68 (225)
Q Consensus 5 ~~~~k~~~~~~~GA~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 68 (225)
.++.|+.+||.|||+|+.++...+ ...++..+.+++.++++.+|+.++... +...||.++++|
T Consensus 164 ~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~s~~~-~~~~~~~~ig~E 242 (427)
T PRK12391 164 QKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALGSVLN-HVLLHQTVIGLE 242 (427)
T ss_pred cCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcCCCCc-HHHhhHHHHHHH
Confidence 477899999999999999985211 112456677777665454555443322 347899999999
Q ss_pred HHHhhC---CCccEEEEecCcchhHHHHHHHHHh---hC-CCcEEEEEeCCCCccccCCCC--------c--c-cccccc
Q 027277 69 IWNDSG---GKVDAFIAGIGTGGTVTGAGRFLKE---KN-PNIKVYGIEPSESAVLNGGQP--------G--K-HLIQGI 130 (225)
Q Consensus 69 i~~Ql~---~~~d~iv~~~G~Gg~~aGi~~~~k~---~~-~~~~vigVe~~~~~~~~~~~~--------~--~-~~~~gl 130 (225)
|++|+. ..||+||+|+|+||+++|++.+|.. .+ +++|||+|||++++++..+.. . + ..+.++
T Consensus 243 i~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~~gd~~~~~p~~~~~~l 322 (427)
T PRK12391 243 AKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYDFGDTAGLTPLLKMYTL 322 (427)
T ss_pred HHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhccccccccccccccCCccceeEec
Confidence 999995 3699999999999999999997733 34 789999999999988764321 1 1 223455
Q ss_pred CCCCCccccc-----------------ccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCC--C
Q 027277 131 GAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN--A 191 (225)
Q Consensus 131 ~~~~~~~~~~-----------------~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~--~ 191 (225)
+.++.+..+. .....+.+.|+|+|+++++++|+++|||+++|+||++++++++++++... +
T Consensus 323 G~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~alaaa~~~a~~~~~~~~ 402 (427)
T PRK12391 323 GHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGE 402 (427)
T ss_pred CCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHHHHHHHHHHHhccccCC
Confidence 5444333221 23345789999999999999999999999999999999999998865432 3
Q ss_pred CCEEEEEecCCCCCCcChhhchhHH
Q 027277 192 GKLIVVIFPSAGERYLSTALFESIR 216 (225)
Q Consensus 192 ~~~vv~v~~~gG~~~~~~~~~~~~~ 216 (225)
+++||+++|+.|+++++ .|+++.
T Consensus 403 ~~~iv~~lsG~G~~d~~--~y~~~l 425 (427)
T PRK12391 403 EKVILFNLSGHGLLDLA--AYDAYL 425 (427)
T ss_pred CCEEEEEeCCCCCCCHH--HHHHHh
Confidence 45566665333665544 576654
No 72
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=3.6e-32 Score=232.16 Aligned_cols=199 Identities=21% Similarity=0.214 Sum_probs=152.7
Q ss_pred hHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhC-CCeEEeCCCC--CCCChHhhHhhhHHHHHHhh---CCCc
Q 027277 6 SIERRIILRALGAEVYLADPAV--GFEGFVKKGEEILNRT-PNGYILGQFE--NPANPEIHYETTGPEIWNDS---GGKV 77 (225)
Q Consensus 6 ~~~k~~~~~~~GA~v~~~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~~--~~~~~~~g~~t~~~Ei~~Ql---~~~~ 77 (225)
++.|+.+|+.|||+|+.++... ...++...+.+.+++. +..|+++.+. ++.. ..||.++++||++|+ +..|
T Consensus 111 ~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~ 189 (337)
T TIGR01274 111 RVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDHPLG-GLGFVGFAFEVREQEGELGFKF 189 (337)
T ss_pred ccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCCccc-hhHHHHHHHHHHHHHHhcCCCC
Confidence 3689999999999999998521 1235555566555554 2336666653 3555 678999999999995 3469
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC---CccccccccCCCCC-c---ccccccCcCeEEEe
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAGVI-P---PVLDVAMLDEVITV 150 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~gl~~~~~-~---~~~~~~~~~~~~~v 150 (225)
|+||+|+|+|||++|++++|++.++++|||||||+++..+.... ...+.+++++.... + +.+...+.++.|.|
T Consensus 190 D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v 269 (337)
T TIGR01274 190 DYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQILRIARNTAEKIGLERDITEDDVVLDTRFAYPEYGV 269 (337)
T ss_pred CEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCcCccceEEeccccCCCcCC
Confidence 99999999999999999999999999999999999997653221 11233445543321 1 34567788999999
Q ss_pred CHHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCC-CCCEEEEEecCCCCCC
Q 027277 151 SSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPEN-AGKLIVVIFPSAGERY 206 (225)
Q Consensus 151 ~d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~-~~~~vv~v~~~gG~~~ 206 (225)
+|+|++++++.|++++|+++|| |||++++|++++.+++.. ++++|| ++||||..-
T Consensus 270 ~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~~~~g~~~~~~~vv-~~htGG~~~ 326 (337)
T TIGR01274 270 PNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEMIRRGEFKEGSNVL-YAHLGGAPA 326 (337)
T ss_pred CCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHHHhcCCCCCCCEEE-EEeCCChhh
Confidence 9999999999999999999999 799999999999987654 456777 455999743
No 73
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=2.5e-31 Score=229.30 Aligned_cols=208 Identities=22% Similarity=0.314 Sum_probs=151.8
Q ss_pred CCCC-Ch--HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCeEEe-CCCCC----CCChHhhHhhhHHHHH
Q 027277 1 MPST-YS--IERRIILRALGAEVYLADP-AVGFEGFVKKGEE-ILNRTPNGYIL-GQFEN----PANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~-~~--~~k~~~~~~~GA~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~-~~~~~----~~~~~~g~~t~~~Ei~ 70 (225)
||+. .+ +.|+.+||.+||+|+.++. ...++++.+.+.+ +.++.++.+|+ .++.+ |.++..||+|++.||+
T Consensus 137 mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~tig~Ei~ 216 (397)
T PRK04346 137 MGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSVIGEEAK 216 (397)
T ss_pred ecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcchHHHHHH
Confidence 5664 23 3577889999999999984 3456666665555 45543344554 32221 3444569999999999
Q ss_pred HhhC----CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc--------cccCCCCc---------------
Q 027277 71 NDSG----GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG--------------- 123 (225)
Q Consensus 71 ~Ql~----~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~~--------------- 123 (225)
+|+. ..||+||+|+|+||+++|++.+|++ .+++|||||||.++. ++..++++
T Consensus 217 eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g 295 (397)
T PRK04346 217 AQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYLLQDEDG 295 (397)
T ss_pred HHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeeccccceecccCCC
Confidence 9984 2599999999999999999999976 789999999999863 22222221
Q ss_pred ----ccc-ccccCCCCC-c--ccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEE
Q 027277 124 ----KHL-IQGIGAGVI-P--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI 195 (225)
Q Consensus 124 ----~~~-~~gl~~~~~-~--~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~v 195 (225)
.+. ..||..+.+ | ..+.....++.+.|+|+|+++++++|+++|||+++++||++++++++++++. .++++|
T Consensus 296 ~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kla~~l-~~~~~V 374 (397)
T PRK04346 296 QILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQII 374 (397)
T ss_pred ccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHhhhhc-CCCCeE
Confidence 111 234432221 1 1223455678999999999999999999999999999999999999987653 357889
Q ss_pred EEEecCCCCCCcChh
Q 027277 196 VVIFPSAGERYLSTA 210 (225)
Q Consensus 196 v~v~~~gG~~~~~~~ 210 (225)
|+++|++|+||++++
T Consensus 375 vv~lsGrG~kd~~~~ 389 (397)
T PRK04346 375 VVNLSGRGDKDVFTV 389 (397)
T ss_pred EEEeCCCCccCHHHH
Confidence 999977799999973
No 74
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=4.4e-31 Score=228.26 Aligned_cols=206 Identities=21% Similarity=0.293 Sum_probs=153.7
Q ss_pred CCCCC---hHHHHHHHHHcCCEEEEeCC-CCChHHHH-HHHHHHHHhCCCeEEe-------CCCCCCCChHhhHhhhHHH
Q 027277 1 MPSTY---SIERRIILRALGAEVYLADP-AVGFEGFV-KKGEEILNRTPNGYIL-------GQFENPANPEIHYETTGPE 68 (225)
Q Consensus 1 vP~~~---~~~k~~~~~~~GA~v~~~~~-~~~~~~~~-~~a~~~~~~~~~~~~~-------~~~~~~~~~~~g~~t~~~E 68 (225)
||+.. ...|+.+||.|||+|+.++. ..+++++. +.+++++++.++.+|+ +|| +.....++++++.|
T Consensus 150 m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P~--~~~v~~~q~tig~E 227 (410)
T PLN02618 150 MGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPY--PMMVRDFHSVIGKE 227 (410)
T ss_pred EcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCCC--HHHHHHhhHHHHHH
Confidence 45543 35677799999999999954 34677776 4445576653345555 343 23346899999999
Q ss_pred HHHhh----CCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc--------cccCCCC--------------
Q 027277 69 IWNDS----GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQP-------------- 122 (225)
Q Consensus 69 i~~Ql----~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~-------------- 122 (225)
|.+|+ +..||+||+|+|+||+++|++.+|+. ++++|||||||.++. ++..+++
T Consensus 228 i~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a~l~~g~~gv~~g~~~~~l~~~ 306 (410)
T PLN02618 228 TRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAATLTKGEVGVLHGAMSYLLQDE 306 (410)
T ss_pred HHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCcccccccccchhcCCcceeccccccccccc
Confidence 98776 34699999999999999999999975 789999999999972 2222222
Q ss_pred -----ccc-cccccCCCCC-cc-c-ccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCC
Q 027277 123 -----GKH-LIQGIGAGVI-PP-V-LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGK 193 (225)
Q Consensus 123 -----~~~-~~~gl~~~~~-~~-~-~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~ 193 (225)
.++ ...||..+.. +. . +.....++.+.|+|+|+++++++|+++|||+++++|+++++++++++++. .+++
T Consensus 307 ~g~~~~~~sia~gl~~pgvgp~~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~~sSa~a~a~a~~~a~~l-~~~~ 385 (410)
T PLN02618 307 DGQIIEPHSISAGLDYPGVGPEHSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPALETSHALAYLEKLCPTL-PDGT 385 (410)
T ss_pred cCCCCCCcchhhhhcCCCCcHHHHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHHhHhc-CCCC
Confidence 111 1234433211 11 1 22346789999999999999999999999999999999999999998764 4578
Q ss_pred EEEEEecCCCCCCcChh
Q 027277 194 LIVVIFPSAGERYLSTA 210 (225)
Q Consensus 194 ~vv~v~~~gG~~~~~~~ 210 (225)
+||+++++.|+||++++
T Consensus 386 ~iVv~lsgrG~Kd~~~v 402 (410)
T PLN02618 386 KVVVNCSGRGDKDVNTA 402 (410)
T ss_pred EEEEEeCCCCcCCHHHH
Confidence 99999999999999984
No 75
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=4.6e-30 Score=233.25 Aligned_cols=209 Identities=22% Similarity=0.295 Sum_probs=153.9
Q ss_pred CCCC---ChHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHHhCC-CeEEeCCCCCC----CChHhhHhhhHHHHH
Q 027277 1 MPST---YSIERRIILRALGAEVYLADPA-VGFEGFVKKG-EEILNRTP-NGYILGQFENP----ANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~---~~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~----~~~~~g~~t~~~Ei~ 70 (225)
||+. .+..|+.+|+.|||+|+.++.. ..++++.+.+ ++++++.+ .+|+++++.|+ .++.+||+++|.||+
T Consensus 410 mp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v~agq~tiG~EI~ 489 (695)
T PRK13802 410 MGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMVRDFQKIIGEEAK 489 (695)
T ss_pred EeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHHHHHHHHHHHHHH
Confidence 4654 4788999999999999999842 3567775555 45665533 45777777543 344689999999999
Q ss_pred HhhCC-----CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCCC-------cc--------------
Q 027277 71 NDSGG-----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP-------GK-------------- 124 (225)
Q Consensus 71 ~Ql~~-----~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~-------~~-------------- 124 (225)
+|+.. .||+||+|+|+||+++|++.+|++ .+++|||||||.++......+. +.
T Consensus 490 eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g~~~g~~~~~~~~ 568 (695)
T PRK13802 490 QQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELGMFQGAKSYLLEN 568 (695)
T ss_pred HHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCccccccceeecccC
Confidence 99952 599999999999999999999976 6889999999999753321100 00
Q ss_pred ---------ccccccCCCCC-cccccccCcCeE--EEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCC--
Q 027277 125 ---------HLIQGIGAGVI-PPVLDVAMLDEV--ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN-- 190 (225)
Q Consensus 125 ---------~~~~gl~~~~~-~~~~~~~~~~~~--~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~-- 190 (225)
+...||..+-+ |..-.....+.. +.|+|+|++++.+.|+++|||+++|+||++++++++++++...
T Consensus 569 ~~g~~~~~~sis~gLdy~gvgp~~~~l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAva~a~~~a~~~~~~~ 648 (695)
T PRK13802 569 DEGQTLDTYSISAGLDYASVGPEHAWLKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAVAGAYKAAADLKAKG 648 (695)
T ss_pred CCCCccCccccccccCCCCCCchhHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHHHHHHHHHHhccccc
Confidence 00112211111 111111224444 8999999999999999999999999999999999999876432
Q ss_pred -CCCEEEEEecCCCCCCcChh
Q 027277 191 -AGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 191 -~~~~vv~v~~~gG~~~~~~~ 210 (225)
.+++||+++++.|+||++++
T Consensus 649 ~~~~~Vv~~lsg~GdKdl~~~ 669 (695)
T PRK13802 649 YEHPVMIVNISGRGDKDMNTA 669 (695)
T ss_pred CCCCEEEEEECCCCcCCHHHH
Confidence 25689999999999999984
No 76
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=99.97 E-value=3.2e-29 Score=227.64 Aligned_cols=208 Identities=22% Similarity=0.260 Sum_probs=151.4
Q ss_pred CCCCC---hHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHH-HHHhCCCeEEeCCCC---C--CCChHhhHhhhHHHHH
Q 027277 1 MPSTY---SIERRIILRALGAEVYLADPA-VGFEGFVKKGEE-ILNRTPNGYILGQFE---N--PANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~~---~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~-~~~~~~~~~~~~~~~---~--~~~~~~g~~t~~~Ei~ 70 (225)
||+.. ...|+.+|+.|||+|+.++.. ..+.++.+.+.+ +..+.++.+|+.++. + |.++..||+|++.||+
T Consensus 349 m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~~~tig~Ei~ 428 (610)
T PRK13803 349 MGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYFQSVIGEEAK 428 (610)
T ss_pred EeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHHhhHHHHHHH
Confidence 45543 356889999999999999852 356666554444 434444566664321 2 3443469999999999
Q ss_pred HhhCC----CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc--------cccCCCCc---------------
Q 027277 71 NDSGG----KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA--------VLNGGQPG--------------- 123 (225)
Q Consensus 71 ~Ql~~----~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~--------~~~~~~~~--------------- 123 (225)
+|+.. .||+||+|+|+||+++|++.+|++ .+++|||||||.++. ++..++++
T Consensus 429 ~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~~~~~~~~~g 507 (610)
T PRK13803 429 EQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSMTYLMQDENG 507 (610)
T ss_pred HHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccceeeeecccCC
Confidence 99842 599999999999999999999964 789999999999862 22222221
Q ss_pred ----cc-cccccCCCCC-cc--cccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEE
Q 027277 124 ----KH-LIQGIGAGVI-PP--VLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI 195 (225)
Q Consensus 124 ----~~-~~~gl~~~~~-~~--~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~v 195 (225)
++ ...||..+.+ +. .+.....++.+.|+|+|++++++.|+++|||+++++||++++++++++.+. .++++|
T Consensus 508 ~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~~~~~-~~~~~V 586 (610)
T PRK13803 508 QILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEGRKKF-KKKDIV 586 (610)
T ss_pred cccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHhchhc-CCCCeE
Confidence 11 2244432221 11 122344567899999999999999999999999999999999999986553 357899
Q ss_pred EEEecCCCCCCcChh
Q 027277 196 VVIFPSAGERYLSTA 210 (225)
Q Consensus 196 v~v~~~gG~~~~~~~ 210 (225)
|+++|++|+||++++
T Consensus 587 vv~lsG~G~kd~~~~ 601 (610)
T PRK13803 587 IVNLSGRGDKDIPTL 601 (610)
T ss_pred EEEeCCCCcCCHHHH
Confidence 999988899999973
No 77
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=99.97 E-value=8.6e-30 Score=214.69 Aligned_cols=193 Identities=40% Similarity=0.572 Sum_probs=149.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH-------hCCCeEEeCCCCCCCChHhhHhhhHHHHHHhh
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILN-------RTPNGYILGQFENPANPEIHYETTGPEIWNDS 73 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~-------~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql 73 (225)
||+++++.|+++|+.+||+|+.++. .++++.+.+.++++ ..++. ++|+ ++.+.+.||.+++.||++|+
T Consensus 86 ~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~~~~~Ei~~q~ 160 (306)
T PF00291_consen 86 VPEDVSPEKLKQMRALGAEVILVPG--DVEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYATIGLEIYEQL 160 (306)
T ss_dssp EETTSHHHHHHHHHHTTCEEEEESS--THHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHHHHHHHHHHHH
T ss_pred eccccccccccceeeecceEEEccc--cccccccccccccccccccccccccc--cCcc-cchhhhhhhhhcchhccccc
Confidence 5889999999999999999999884 33434444433332 22233 7777 44455899999999999999
Q ss_pred CCCccE--EEEecCcchhHHHHHHHHHh--hCCCcEEEEEeCCCCcccc----CCCC----ccccccccCCCC-Cc----
Q 027277 74 GGKVDA--FIAGIGTGGTVTGAGRFLKE--KNPNIKVYGIEPSESAVLN----GGQP----GKHLIQGIGAGV-IP---- 136 (225)
Q Consensus 74 ~~~~d~--iv~~~G~Gg~~aGi~~~~k~--~~~~~~vigVe~~~~~~~~----~~~~----~~~~~~gl~~~~-~~---- 136 (225)
+ .||+ ||+|+|+||+++|++.+|+. . |++||++|+|.+++++. .+.. ..+.+.+++.+. .+
T Consensus 161 ~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~gl~~~~~~~~~~~ 238 (306)
T PF00291_consen 161 G-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIAGLGVPMPFPGELD 238 (306)
T ss_dssp T-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSSTGGTSSSCTTTTHH
T ss_pred c-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeeecccCCccchhhhh
Confidence 7 7766 99999999999999999999 7 89999999999987664 2332 123456776554 12
Q ss_pred ccccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCC---CCCEEEEEec
Q 027277 137 PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN---AGKLIVVIFP 200 (225)
Q Consensus 137 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~---~~~~vv~v~~ 200 (225)
+.+.+++.++++.|+|+|+.+++++|++++|+++||++|+++++++++.++... ++++||+|+|
T Consensus 239 ~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~~~~~~~~~~~~~~vv~v~t 305 (306)
T PF00291_consen 239 LELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKLAERGSLAPPAGKRVVVVLT 305 (306)
T ss_dssp HHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHHHHHTGCHTTTTSEEEEEE-
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHHHHhCCccccCCCeEEEEcC
Confidence 234467778889999999999999999999999999999999999999877642 6789999883
No 78
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=99.96 E-value=3.7e-29 Score=212.87 Aligned_cols=199 Identities=20% Similarity=0.253 Sum_probs=141.5
Q ss_pred CCCCChHH-HHHHHHHcCCEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEEe-CCCCCCCChHhhHhhhHHHHHHhhC-
Q 027277 1 MPSTYSIE-RRIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSG- 74 (225)
Q Consensus 1 vP~~~~~~-k~~~~~~~GA~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~Ql~- 74 (225)
||...+.. |..+++++||+++.++...+ .+.+.+.+.++.++.+..|++ +++.|+.+ ..||.+...||++|++
T Consensus 102 vp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~-~~g~~~~~~EI~~q~~~ 180 (329)
T PRK14045 102 LRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG-TLGYVRAVGEIATQVKK 180 (329)
T ss_pred EeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH-HHHHHHHHHHHHHHHHh
Confidence 46554433 66778999999998874222 235566666666555345554 55568887 5666666669999996
Q ss_pred --CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC-----CccccccccCCCC-CcccccccCcCe
Q 027277 75 --GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ-----PGKHLIQGIGAGV-IPPVLDVAMLDE 146 (225)
Q Consensus 75 --~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~-----~~~~~~~gl~~~~-~~~~~~~~~~~~ 146 (225)
..+|+||+|+|||||++|++.++|..+|++|||||+|.+......++ ...+.+.+++.+. .+. +.+.+.|+
T Consensus 181 ~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~d~~~~~ 259 (329)
T PRK14045 181 LGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKKTKELLGVKVKVQEPE-LYDYSFGE 259 (329)
T ss_pred cCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHHHHHHhCCCCCccceE-ecccccCC
Confidence 36999999999999999999999999999999999997633211111 0112234444332 222 22333466
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 204 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~ 204 (225)
...++ +|+++++++++++|||++|| |||++++++++++++... +++||+++ |||.
T Consensus 260 y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~~~~~~~-~~~iv~ih-tGG~ 315 (329)
T PRK14045 260 YGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDLAKKGEL-GEKILFIH-TGGI 315 (329)
T ss_pred CCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHcCCC-CCCEEEEE-CCCc
Confidence 44555 79999999999999999999 999999999999987533 56777766 8885
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=99.95 E-value=1.5e-27 Score=205.28 Aligned_cols=204 Identities=23% Similarity=0.244 Sum_probs=168.5
Q ss_pred CCCC-ChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-Ccc
Q 027277 1 MPST-YSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVD 78 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d 78 (225)
+|++ ++..|+.+|..+||+++.++ +++|++.+.++++++++ ++++....-||.. +.||.|+++|+++|+++ .||
T Consensus 156 ~P~g~vs~~k~~q~~~~ga~~i~v~--G~fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe~~~ql~~~~p~ 231 (411)
T COG0498 156 YPKGKVSPGKLAQMLTLGAHVIAVD--GNFDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFEIAEQLGWKAPD 231 (411)
T ss_pred ecCCCCCHHHHHHHHhcCCEEEEEc--CcHHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhHHHHHhCCCCCC
Confidence 5888 99999999999999999999 47899999999999876 5566666668887 89999999999999974 699
Q ss_pred EEEEecCcchhHHHHHHHHHhhCC------CcEEEEEeCCCCccccCCC-----CccccccccCCCCCccccc------c
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNP------NIKVYGIEPSESAVLNGGQ-----PGKHLIQGIGAGVIPPVLD------V 141 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~------~~~vigVe~~~~~~~~~~~-----~~~~~~~gl~~~~~~~~~~------~ 141 (225)
+|++|+|+||++.|++.+|++..+ .+++.+|+++++.++.... ...+..++|.++. |.++. +
T Consensus 232 ~v~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~~~~~T~a~am~I~~-p~n~~r~l~a~~ 310 (411)
T COG0498 232 HVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGRETPETIAPAMDIGN-PSNWERALFALR 310 (411)
T ss_pred eEEEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhcccccccccccccccccCC-CCCHHHHHHHHH
Confidence 999999999999999999998754 3789999999987765321 1223345555443 22221 3
Q ss_pred cCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 142 AMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 142 ~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
+..+..+.|+|+|++++++++++++|+++||+||+++++++++.++...++.++|+++|.+|.|+.+.
T Consensus 311 es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~~~~~i~~~~~vV~v~Tg~~~K~~~~ 378 (411)
T COG0498 311 ESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLVLTGHGLKFPDT 378 (411)
T ss_pred hcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHHHHhhcCCCCeEEEEecCCcccChhH
Confidence 34567899999999999999999999999999999999999998762245689999998889999987
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.92 E-value=3.6e-24 Score=174.05 Aligned_cols=196 Identities=23% Similarity=0.284 Sum_probs=149.9
Q ss_pred HHHHHHHcCCEEEEeCCCCCh--HHHHHHHHHHHHhCCCe-EEeCCC-CCCCChHhhHhhhHHHHHHhhC--CCccEEEE
Q 027277 9 RRIILRALGAEVYLADPAVGF--EGFVKKGEEILNRTPNG-YILGQF-ENPANPEIHYETTGPEIWNDSG--GKVDAFIA 82 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~--~~~~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~g~~t~~~Ei~~Ql~--~~~d~iv~ 82 (225)
++.+.+.+|+++..++...+. +...+..++..++.++. |.++.. .||.. ..||...+.||.+|.. -++|.||+
T Consensus 108 n~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVv 186 (323)
T COG2515 108 NLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLG-ALGYVRLALEIAEQAEQLLKFDSVVV 186 (323)
T ss_pred chhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccc-cccHHHHHHHHHHHHhhccCCCEEEE
Confidence 456678899999999975444 33344444444444443 333333 36665 6799999999999986 46999999
Q ss_pred ecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccccCCC---CccccccccCCC-CCcccccccCcCeEEEeCHHHHHHH
Q 027277 83 GIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGAG-VIPPVLDVAMLDEVITVSSEEAIET 158 (225)
Q Consensus 83 ~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~---~~~~~~~gl~~~-~~~~~~~~~~~~~~~~v~d~e~~~a 158 (225)
++|||||.||+..++...+++.+|||+.+.........+ ...++++.++.. ...+.+..+|..+.|.++.+|.+++
T Consensus 187 a~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~qv~~L~~~~a~~~~~~~~~~v~~~~dy~~~~Yg~p~~e~~e~ 266 (323)
T COG2515 187 APGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKEQVLNLAQATAELLGLGSEADVLLSDDYHHPGYGKPNEEDIEA 266 (323)
T ss_pred eCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHHHHHHHHHHHHHHcCCCCCceEEEEecccCCccCCcCHHHHHH
Confidence 999999999999999999999999999988876543211 112223333333 2344566789999999999999999
Q ss_pred HHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCC
Q 027277 159 SKLLALKEGLLVGI-SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 205 (225)
Q Consensus 159 ~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~ 205 (225)
++.+++.|||++|| |+|++|.+++++++++.+++++-|+++|+||--
T Consensus 267 i~~~~~~eGillDpVYtgKam~Glid~~~k~~f~~~~~vLfiHtGG~~ 314 (323)
T COG2515 267 IKLLARLEGILLDPVYTGKAMYGLIDLARKGEFPDGSPVLFIHTGGAP 314 (323)
T ss_pred HHHHHHhhCcccccccchHHHHHHHHHHhcccCCCCCceEEEEcCCcc
Confidence 99999999999999 999999999999998877766666777799853
No 81
>PRK09225 threonine synthase; Validated
Probab=99.85 E-value=8.6e-20 Score=160.51 Aligned_cols=198 Identities=17% Similarity=0.123 Sum_probs=148.1
Q ss_pred CCCC-ChHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHHHh------CCCeEEeCCCCCCCChHhhHhhhHHHHH
Q 027277 1 MPST-YSIERRIILRAL-GAEV--YLADPAVGFEGFVKKGEEILNR------TPNGYILGQFENPANPEIHYETTGPEIW 70 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~-GA~v--~~~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 70 (225)
+|++ +|+.++.+|..+ |++| +.++ ++++++...++++..+ . +++..|.. |+.. +.||.+..+|++
T Consensus 162 ~P~g~vs~~q~~Qm~t~~g~nv~vi~V~--G~fDD~q~~vk~~~~d~~~~~~~-~l~saNSi-N~~R-i~gQ~~yyfea~ 236 (462)
T PRK09225 162 YPKGKVSPVQEKQMTTLQGDNIHVVAVE--GNFDDCQALVKAAFNDEELKEKL-KLSSANSI-NIGR-LLAQIVYYFYAY 236 (462)
T ss_pred EcCCCCCHHHHHHHHhhcCCCeEEEEeC--CCHHHHHHHHHHHhhchhhhhcC-ceEEEecc-CHHH-HHHHHHHHHHHH
Confidence 4886 999999999999 9977 5666 5789998888886544 3 56667765 6776 899999999999
Q ss_pred HhhCC---CccEEEEecCcchhHHHHHHHHHhhC-CCcEEEEEeCCCCcccc----CCC--C---ccccccccCCCCCcc
Q 027277 71 NDSGG---KVDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAVLN----GGQ--P---GKHLIQGIGAGVIPP 137 (225)
Q Consensus 71 ~Ql~~---~~d~iv~~~G~Gg~~aGi~~~~k~~~-~~~~vigVe~~~~~~~~----~~~--~---~~~~~~gl~~~~~~~ 137 (225)
+|+.+ .||+|++|+|+||.+.|.+.+ |+++ |-+|+|+++ ..++.+. .+. + ..+..++|.+.. |.
T Consensus 237 ~ql~~~~~~p~~~vVPtGnfgni~a~~~A-k~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~~~~~~T~s~amdI~~-ps 313 (462)
T PRK09225 237 LQLGIEAGEKVNFSVPSGNFGNILAGYYA-KKMGLPIKRLIVAT-NENDVLTRFLKTGVYDPRPTVATLSPAMDISV-SS 313 (462)
T ss_pred HHhccccCCCCEEEEECCcHHHHHHHHHH-HHcCCCcceEEEEe-cCChHHHHHHHcCCCccCCCCCCcCchhhcCC-CC
Confidence 99964 389999999999999999988 5555 445899987 4444332 222 1 122334443322 11
Q ss_pred cccc---------------------cCcC---------------eEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHH
Q 027277 138 VLDV---------------------AMLD---------------EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAA 181 (225)
Q Consensus 138 ~~~~---------------------~~~~---------------~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~ 181 (225)
++.+ +..+ ..+.|+|+|+.++++.+++++|+++||+||++++++
T Consensus 314 n~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~~~G~~~dPhtAva~aa~ 393 (462)
T PRK09225 314 NFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYEEYGYLIDPHTAVAYKAA 393 (462)
T ss_pred cHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHH
Confidence 1111 1122 568999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCEEEEEecCCCCCCcChh
Q 027277 182 IRVAKRPENAGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 182 ~~~~~~~~~~~~~vv~v~~~gG~~~~~~~ 210 (225)
.++.. ++.++|++.|.+|.|+.+.+
T Consensus 394 ~~~~~----~~~~~V~l~Ta~p~Kf~~~v 418 (462)
T PRK09225 394 REYLD----PGEPGVVLSTAHPAKFPEVV 418 (462)
T ss_pred HHhhC----CCCCEEEEecCCccCCHHHH
Confidence 88632 34678999989999988763
No 82
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.81 E-value=1.8e-18 Score=141.53 Aligned_cols=200 Identities=24% Similarity=0.356 Sum_probs=140.1
Q ss_pred HHHHHHHcCCEEEEeCC-CCChHHHHHHHHHH-HHhCCCeEEe-----CCCCCCCChHhhHhhhHHHHHHhh----CCCc
Q 027277 9 RRIILRALGAEVYLADP-AVGFEGFVKKGEEI-LNRTPNGYIL-----GQFENPANPEIHYETTGPEIWNDS----GGKV 77 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~-~~~~~~~~~~a~~~-~~~~~~~~~~-----~~~~~~~~~~~g~~t~~~Ei~~Ql----~~~~ 77 (225)
++-+|+.+||+|+.|.. +....++...|.+. .......+|+ .|.--|..+..-|+.|+.|.-+|+ +.-|
T Consensus 145 NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vIG~E~k~Qile~egrlP 224 (396)
T COG0133 145 NVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVIGEEAKAQILEKEGRLP 224 (396)
T ss_pred chhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHHhHHHHHHHHHHhCCCC
Confidence 45678999999998864 45677777776654 4444445554 222225665678999999998886 2349
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcc--------ccCCCCc-------------------cccc-cc
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV--------LNGGQPG-------------------KHLI-QG 129 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~--------~~~~~~~-------------------~~~~-~g 129 (225)
|+||.|+|+|+...|+..-|.. .+++++||||+.+... +..|+++ .+.+ .|
T Consensus 225 D~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyllQd~~GQi~e~hSISAG 303 (396)
T COG0133 225 DAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLLQDEDGQILESHSISAG 303 (396)
T ss_pred CeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceeeEcCCCCEeeeeeeccC
Confidence 9999999999999999888764 4689999999988642 2222221 0111 23
Q ss_pred cCCCCC-ccc--ccccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCC
Q 027277 130 IGAGVI-PPV--LDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERY 206 (225)
Q Consensus 130 l~~~~~-~~~--~~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~ 206 (225)
|..+-+ |.. +...-.-..+.|+|+|++++.+.|.+.|||+.-..|+.|++.+++++++.. +.+.+|+-++..|+|+
T Consensus 304 LDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kla~~~~-~~~~ivvnlSGRGDKD 382 (396)
T COG0133 304 LDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKLAPKLP-KDEIIVVNLSGRGDKD 382 (396)
T ss_pred CCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhchhcC-CCcEEEEEccCCCccc
Confidence 322111 211 112223456899999999999999999999999999999999999997752 4445566665669999
Q ss_pred cChh
Q 027277 207 LSTA 210 (225)
Q Consensus 207 ~~~~ 210 (225)
..++
T Consensus 383 v~tv 386 (396)
T COG0133 383 VFTV 386 (396)
T ss_pred HHHH
Confidence 8874
No 83
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.81 E-value=3e-18 Score=150.86 Aligned_cols=201 Identities=16% Similarity=0.089 Sum_probs=147.1
Q ss_pred CCCC-ChHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHHHhC-----CCeEEeCCCCCCCChHhhHhhhHHHHHH
Q 027277 1 MPST-YSIERRIILRALGA---EVYLADPAVGFEGFVKKGEEILNRT-----PNGYILGQFENPANPEIHYETTGPEIWN 71 (225)
Q Consensus 1 vP~~-~~~~k~~~~~~~GA---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 71 (225)
+|++ +|+.++.+|..+|+ +++.+++ +++++...++++..+. -+++..|.. |+.. +.||.+..+|+++
T Consensus 163 ~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G--~fDd~q~~vk~~~~d~~~~~~~~l~saNSi-N~~R-i~~Q~~yyf~a~~ 238 (460)
T cd01560 163 YPKGGVSPIQELQMTTLPADNVHVVAVEG--DFDDCQSLVKALFADEDFNKKLKLSSANSI-NWAR-ILAQIVYYFYAYL 238 (460)
T ss_pred EcCCCCCHHHHHHHHhhCCCceEEEEEcC--CHHHHHHHHHHHhcChhhHhcceEEEEecc-CHHH-HHHHHHHHHHHHH
Confidence 4876 99999999999997 7888884 6899988888765431 146666664 6776 8899999999999
Q ss_pred hhCC----CccEEEEecCcchhHHHHHHHHHhhC-CCcEEEEEeCCCCcc--c-cCCCC------ccccccccCCCCCcc
Q 027277 72 DSGG----KVDAFIAGIGTGGTVTGAGRFLKEKN-PNIKVYGIEPSESAV--L-NGGQP------GKHLIQGIGAGVIPP 137 (225)
Q Consensus 72 Ql~~----~~d~iv~~~G~Gg~~aGi~~~~k~~~-~~~~vigVe~~~~~~--~-~~~~~------~~~~~~gl~~~~~~~ 137 (225)
|+.+ .|+.|++|+|+||.+.|.+.+.+ ++ |-.|+|+++-+.... + ..|.. ..+..++|.+.. |.
T Consensus 239 ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~-mGlpi~kli~a~n~n~il~~~~~~G~y~~~~~~~~T~spamdI~~-ps 316 (460)
T cd01560 239 QLLKRGEGEKVEFSVPTGNFGNILAGYYAKK-MGLPIKKLIVATNENDVLRRFFKTGRYDRRESLKQTLSPAMDILK-SS 316 (460)
T ss_pred HhccccCCCCCEEEEECCcHHHHHHHHHHHH-cCCCCccEEEEeCCChHHHHHHHcCCCcCCCCCCCCcCchhhcCC-CC
Confidence 9963 58999999999999999999854 44 446888865433211 1 12221 122334443322 22
Q ss_pred ccc------ccCc------------------------------CeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHH
Q 027277 138 VLD------VAML------------------------------DEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAA 181 (225)
Q Consensus 138 ~~~------~~~~------------------------------~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~ 181 (225)
++. ...- -..+.|+|+|+.++++.+++++|+++||.||++++++
T Consensus 317 n~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~~~~~~G~~vdPhtAva~aa~ 396 (460)
T cd01560 317 NFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIREVYEETGYLIDPHTAVGVRAA 396 (460)
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHHHHHhcCEEECchHHHHHHHH
Confidence 111 1111 1568999999999999999999999999999999999
Q ss_pred HHHhhcCCCCCCEEEEEecCCCCCCcChh
Q 027277 182 IRVAKRPENAGKLIVVIFPSAGERYLSTA 210 (225)
Q Consensus 182 ~~~~~~~~~~~~~vv~v~~~gG~~~~~~~ 210 (225)
.++.++ ++.++|++.|.+|.|..+.+
T Consensus 397 ~~~~~~---~~~~~V~l~Ta~p~Kf~~~v 422 (460)
T cd01560 397 ERVRKS---PGTPGVVLSTAHPAKFPEAV 422 (460)
T ss_pred HHHHhc---cCCCEEEEecCCcccCHHHH
Confidence 887654 34578999988999987763
No 84
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.77 E-value=4.4e-18 Score=138.50 Aligned_cols=182 Identities=19% Similarity=0.198 Sum_probs=152.1
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-----
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG----- 75 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~----- 75 (225)
|+.++.+.|++++|+.|.+|+.+. ++|..+++.-++.++..|.+||++.-++... ..||...+.-+-.|++.
T Consensus 190 MSADAr~WKKd~LRs~gV~ViEYe--~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~v 266 (443)
T COG3048 190 MSADARAWKKDKLRSHGVTVVEYE--QDYGVAVEEGRKEAESDPNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVV 266 (443)
T ss_pred ecchHHHHHHHHHHhcCceEEEec--chhhHHHHHhhhhhccCCceEEecccchhhh-hhhHHHHHHHHHHHHHhcCcee
Confidence 677889999999999999999998 5789999999999999889999987655554 78999999999999842
Q ss_pred ---CccEEEEecCcchhHHHHHHHHHhh-CCCcEEEEEeCCCCccccCC---------------CCccccccccCCCCCc
Q 027277 76 ---KVDAFIAGIGTGGTVTGAGRFLKEK-NPNIKVYGIEPSESAVLNGG---------------QPGKHLIQGIGAGVIP 136 (225)
Q Consensus 76 ---~~d~iv~~~G~Gg~~aGi~~~~k~~-~~~~~vigVe~~~~~~~~~~---------------~~~~~~~~gl~~~~~~ 136 (225)
.|-.|.+|||.||--.|++.|+|.. +.+++++-+||..++|+.-| ....+.++||++++.+
T Consensus 267 d~ehPLfVylPCGVGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpS 346 (443)
T COG3048 267 DAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPS 346 (443)
T ss_pred cCCCceEEEeecCCCCCcchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCcc
Confidence 3778999999999999999999976 56899999999999987521 1223456888877644
Q ss_pred ccc---cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHh
Q 027277 137 PVL---DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVA 185 (225)
Q Consensus 137 ~~~---~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~ 185 (225)
..+ .....+..|+|+|+..++.+..|++.||+.+|||+-+.+++..++.
T Consensus 347 gfVgr~me~lL~G~~TvdD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~ 398 (443)
T COG3048 347 GFVGRAMERLLDGYYTVDDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVC 398 (443)
T ss_pred chHHHHHHHHhCCcEEechHHHHHHHHHHHHhcCcccCchhhhcccCcceee
Confidence 332 2567899999999999999999999999999999888887766554
No 85
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.75 E-value=5.5e-17 Score=133.19 Aligned_cols=211 Identities=22% Similarity=0.308 Sum_probs=145.3
Q ss_pred ChHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHH
Q 027277 5 YSIERRIILRALGAEVYLADPAVG----------------FEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGP 67 (225)
Q Consensus 5 ~~~~k~~~~~~~GA~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~ 67 (225)
..+-++-+|+.|||+|+..+.... .-=++..|.+.+-++++ .|.+..--|. ...||..+|.
T Consensus 165 qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnh--vllhQTViGl 242 (432)
T COG1350 165 QKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNH--VLLHQTVIGL 242 (432)
T ss_pred cchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHH--HHHHHHHHhH
Confidence 346678899999999998774211 11245556666655543 3444322222 3679999999
Q ss_pred HHHHhh---CCCccEEEEecCcchhHHHHHHHHHhh---C-CCcEEEEEeCCCCccccCCCC----c------c-ccccc
Q 027277 68 EIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEK---N-PNIKVYGIEPSESAVLNGGQP----G------K-HLIQG 129 (225)
Q Consensus 68 Ei~~Ql---~~~~d~iv~~~G~Gg~~aGi~~~~k~~---~-~~~~vigVe~~~~~~~~~~~~----~------~-~~~~g 129 (225)
|..+|+ +..||.+|-|||+|+.++|+..-|-.. + ...+.|+|+|..++.+..|+- . + ..+-.
T Consensus 243 EakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltPllKMyT 322 (432)
T COG1350 243 EAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTPLLKMYT 322 (432)
T ss_pred HHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccchhhhhhc
Confidence 996665 456999999999999999998766421 2 238999999999998876541 0 0 01122
Q ss_pred cCCCCCccccc-----------------ccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCC
Q 027277 130 IGAGVIPPVLD-----------------VAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAG 192 (225)
Q Consensus 130 l~~~~~~~~~~-----------------~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~ 192 (225)
|+...+|..+. ..-+-+....+.+|++++.+.+++.|||+.-|.|+.|+.++++.+.+.+..+
T Consensus 323 lGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~~a~~~g 402 (432)
T COG1350 323 LGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEG 402 (432)
T ss_pred cCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHHhccccC
Confidence 33333333221 2344567899999999999999999999999999999999999987765455
Q ss_pred CEEEEEecCCCCCCcChhhchhHHH
Q 027277 193 KLIVVIFPSAGERYLSTALFESIRH 217 (225)
Q Consensus 193 ~~vv~v~~~gG~~~~~~~~~~~~~~ 217 (225)
++.|+++.-+|.-.+|-.-|+++..
T Consensus 403 eekvI~fnlSGHGllDL~~Y~~yl~ 427 (432)
T COG1350 403 EEKVILFNLSGHGLLDLSAYDKYLE 427 (432)
T ss_pred ceeEEEEeccCccccchhhHHHHhh
Confidence 5555555566666666556776654
No 86
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.61 E-value=2.2e-14 Score=118.97 Aligned_cols=201 Identities=21% Similarity=0.275 Sum_probs=133.3
Q ss_pred HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHhC-CCeEEe-----CCCCCCCChHhhHhhhHHHHHHhh----CC
Q 027277 7 IERRIILRALGAEVYLADP-AVGFEGFVKKGEEILNRT-PNGYIL-----GQFENPANPEIHYETTGPEIWNDS----GG 75 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~-~~~~~~~~~~a~~~~~~~-~~~~~~-----~~~~~~~~~~~g~~t~~~Ei~~Ql----~~ 75 (225)
.-++-+||.+||+|+.+.. ....+++...+-++.-.+ +-.+|+ .|+--|.....-+++|+.|-..|. +.
T Consensus 211 alnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr~fhsvIg~Et~~Q~me~~g~ 290 (477)
T KOG1395|consen 211 ALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVRTFHSVIGKETKIQQMEKFGK 290 (477)
T ss_pred HHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHHHHHHHHhHHHHHHHHHHhCC
Confidence 3467789999999998874 223444433333332221 112332 222223333446788888887775 34
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc--------CCCCc-------------------cccc-
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN--------GGQPG-------------------KHLI- 127 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~--------~~~~~-------------------~~~~- 127 (225)
.||+||.|+|+|+..+|+..-|.. ...++.++|+..+...-. .++.+ +|.+
T Consensus 291 ~PD~vvaCvGGGSN~~Glf~pF~~-dk~v~~igveaagdg~dtp~hsatltagd~Gv~hG~~ty~lq~~dGqi~~phsIs 369 (477)
T KOG1395|consen 291 LPDAVVACVGGGSNSAGLFSPFIR-DKSVGMIGVEAAGDGVDTPKHSATLTAGDVGVFHGVTTYVLQDTDGQIFDPHSIS 369 (477)
T ss_pred CCCeEEEeccCCCccccccchhhc-cchhheeeeeecccccCCcchhceeecccccccccceeeeeeccCCccccCCccc
Confidence 599999999999999999988865 345788999877654221 12211 1111
Q ss_pred cccCCCCCcccc---cccCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 027277 128 QGIGAGVIPPVL---DVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 204 (225)
Q Consensus 128 ~gl~~~~~~~~~---~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~ 204 (225)
.||..+-+.+.+ .....-+.+.|+|.|++++.++|++.|||+.-+.+..|+++...+++.. .+++.+|+-+|..|+
T Consensus 370 AGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssHAva~~~~lck~l-~~~k~ivi~~sGrGd 448 (477)
T KOG1395|consen 370 AGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSHAVAGEAELCKTL-PEDKVIVINISGRGD 448 (477)
T ss_pred cCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhhHHHHHHHhcccc-CCCcEEEEEecCCCC
Confidence 222211111111 1223457899999999999999999999999998889999998888775 467888888888899
Q ss_pred CCcCh
Q 027277 205 RYLST 209 (225)
Q Consensus 205 ~~~~~ 209 (225)
|++.+
T Consensus 449 kDvqS 453 (477)
T KOG1395|consen 449 KDVQS 453 (477)
T ss_pred chHHH
Confidence 99876
No 87
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=88.47 E-value=3.6 Score=29.40 Aligned_cols=82 Identities=21% Similarity=0.304 Sum_probs=48.2
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccEEEEecCcch
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGG 88 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G~Gg 88 (225)
++..+.+|++|+.++.+ ++..+ ++++.+-..+++. .+.. ...+|.+-.++ .+|.+|-++|++.
T Consensus 7 ~q~ak~~G~~vi~~~~~---~~k~~----~~~~~Ga~~~~~~-~~~~--------~~~~i~~~~~~~~~d~vid~~g~~~ 70 (130)
T PF00107_consen 7 IQLAKAMGAKVIATDRS---EEKLE----LAKELGADHVIDY-SDDD--------FVEQIRELTGGRGVDVVIDCVGSGD 70 (130)
T ss_dssp HHHHHHTTSEEEEEESS---HHHHH----HHHHTTESEEEET-TTSS--------HHHHHHHHTTTSSEEEEEESSSSHH
T ss_pred HHHHHHcCCEEEEEECC---HHHHH----HHHhhcccccccc-cccc--------cccccccccccccceEEEEecCcHH
Confidence 56789999999998853 33433 4455521233432 2222 23344444443 5999999999877
Q ss_pred hHHHHHHHHHhhCCCcEEEEEe
Q 027277 89 TVTGAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 89 ~~aGi~~~~k~~~~~~~vigVe 110 (225)
++.- +++.+.+.-+++-+-
T Consensus 71 ~~~~---~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 71 TLQE---AIKLLRPGGRIVVVG 89 (130)
T ss_dssp HHHH---HHHHEEEEEEEEEES
T ss_pred HHHH---HHHHhccCCEEEEEE
Confidence 6644 444455555666553
No 88
>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]
Probab=86.05 E-value=1.8 Score=34.66 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=37.4
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHHhhcC
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRP 188 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~~~~~ 188 (225)
...|+++|..++|...+...+.+++|.+|+++-...+...+.
T Consensus 148 se~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~idkt 189 (266)
T KOG2616|consen 148 SERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQIDKT 189 (266)
T ss_pred hhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHHHhcc
Confidence 357899999999999999999999999999998888877664
No 89
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=83.92 E-value=19 Score=28.95 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHhCCCeEEeCCCC-CCCChHhhHhhhHHHHHHhhCC-CccEEEEecCcchhHHHHHHHHHhhCCCcE
Q 027277 28 GFEGFVKKGEEILNRTPNGYILGQFE-NPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNPNIK 105 (225)
Q Consensus 28 ~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~ 105 (225)
+.+++.+..+++.+..+....+.-.. +| -|.....+|..|+.+ .+..+|-.+|. .+++--.. .+-
T Consensus 39 tve~av~~mk~y~~~~~~avSVGLGaGdp-----~Q~~~Va~Ia~~~~P~HVNQvFtgag~-------sr~~Lg~~-~T~ 105 (236)
T TIGR03581 39 TVEEAIEDMKKYQKEIDNAVSVGLGAGDP-----NQSAMVADISAHTQPQHINQVFTGVGT-------SRALLGQA-DTV 105 (236)
T ss_pred CHHHHHHHHHHHHHhCCCceEEecCCCCH-----HHHHHHHHHHHHcCCccccccccchHH-------HHHHhCCc-cce
Confidence 45788888888888776555554332 23 256667899999854 36667755532 33332111 221
Q ss_pred E-EEEeCCCCccccCCCCccccccccCCCCCcc----cccccCcCeE------EEeCHHHHHHHHHHHHHhcCCeecchH
Q 027277 106 V-YGIEPSESAVLNGGQPGKHLIQGIGAGVIPP----VLDVAMLDEV------ITVSSEEAIETSKLLALKEGLLVGISS 174 (225)
Q Consensus 106 v-igVe~~~~~~~~~~~~~~~~~~gl~~~~~~~----~~~~~~~~~~------~~v~d~e~~~a~~~l~~~eGi~~epss 174 (225)
| --|.|.+.+-+..-..++....+- ...+|- .+.++..... =...-.|-+.++...+.++|+.+||++
T Consensus 106 vN~LvsPTG~~G~VkISTGp~Ss~~~-~~iV~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTG 184 (236)
T TIGR03581 106 INGLVSPTGTPGLVNISTGPLSSQGK-EAIVPIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTG 184 (236)
T ss_pred EEEeecCCCccceEEeccCcccccCC-CceeeHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCC
Confidence 1 235555554221000011100000 000110 0111221111 122333447777777778899999999
Q ss_pred HHHHHHHHHH
Q 027277 175 GAAAAAAIRV 184 (225)
Q Consensus 175 gaalaa~~~~ 184 (225)
|.-+--....
T Consensus 185 GIdl~Nf~~I 194 (236)
T TIGR03581 185 GIDLDNFEEI 194 (236)
T ss_pred CccHHhHHHH
Confidence 8765544433
No 90
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=77.31 E-value=23 Score=28.23 Aligned_cols=74 Identities=23% Similarity=0.215 Sum_probs=48.8
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcch
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 88 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg 88 (225)
-.+.+...||+|+.++.. .+.......++.++.+..++. . |... ..-...+..++.++.++.+|.+|..+|...
T Consensus 12 ia~~l~~~Ga~V~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~-D~~~-~~~v~~~~~~~~~~~~g~iD~lV~~a~~~~ 85 (241)
T PF13561_consen 12 IARALAEEGANVILTDRN--EEKLADALEELAKEYGAEVIQ--C-DLSD-EESVEALFDEAVERFGGRIDILVNNAGISP 85 (241)
T ss_dssp HHHHHHHTTEEEEEEESS--HHHHHHHHHHHHHHTTSEEEE--S-CTTS-HHHHHHHHHHHHHHHCSSESEEEEEEESCT
T ss_pred HHHHHHHCCCEEEEEeCC--hHHHHHHHHHHHHHcCCceEe--e-cCcc-hHHHHHHHHHHHhhcCCCeEEEEecccccc
Confidence 345667889999999853 344445566777776444322 2 2333 455677778888888568999998877543
No 91
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=74.56 E-value=24 Score=28.79 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=46.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...||++.++--. +....+.++++++. +..++-|.+ -.+ .+.-..+..+|-+++ +++|.+|.+++-
T Consensus 25 Ak~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cD-V~~-d~~i~~~f~~i~~~~-g~lD~lVHsIaF 94 (259)
T COG0623 25 AKALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCD-VTN-DESIDALFATIKKKW-GKLDGLVHSIAF 94 (259)
T ss_pred HHHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecC-CCC-HHHHHHHHHHHHHhh-CcccEEEEEecc
Confidence 45678899999987532 24456677888877 444444443 333 456666666777777 579999998863
No 92
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=73.16 E-value=39 Score=25.82 Aligned_cols=92 Identities=21% Similarity=0.183 Sum_probs=47.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcch
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGG 88 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~Gg 88 (225)
++.+...+..|.++++.. +...+.+..+.+++|+.-.+..++.+.. ..... +|.+++. ..||.|+++.|+--
T Consensus 39 l~~~~~~~~~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~~~g~~~-~~~~~----~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 39 LELAAQKGLRVFLLGAKP--EVLEKAAERLRARYPGLKIVGYHHGYFG-PEEEE----EIIERINASGADILFVGLGAPK 111 (171)
T ss_pred HHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCcEEEEecCCCCC-hhhHH----HHHHHHHHcCCCEEEEECCCCH
Confidence 344455688899998542 3333444456677777544432222222 12111 2444443 35999999999854
Q ss_pred hHHHHHHHHHhhCCCcEEEEE
Q 027277 89 TVTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 89 ~~aGi~~~~k~~~~~~~vigV 109 (225)
-=. .....+...+..-+++|
T Consensus 112 QE~-~~~~~~~~l~~~v~~~v 131 (171)
T cd06533 112 QEL-WIARHKDRLPVPVAIGV 131 (171)
T ss_pred HHH-HHHHHHHHCCCCEEEEe
Confidence 332 22233333444556665
No 93
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=72.50 E-value=46 Score=28.20 Aligned_cols=98 Identities=22% Similarity=0.208 Sum_probs=61.8
Q ss_pred HHHHHHHHcCCEEEEeCCCCCh-HHH--HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEec
Q 027277 8 ERRIILRALGAEVYLADPAVGF-EGF--VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGI 84 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~-~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~ 84 (225)
.-.++++.||++|+.+++.... +.. .....++.++- +...++- |.+ ..-+.-+..|.+++| +++++++-+
T Consensus 159 ~vA~~~~~fgm~V~~~d~~~~~~~~~~~~~~l~ell~~s-Dvv~lh~---Plt-~~T~~li~~~~~~~M--k~~a~lIN~ 231 (311)
T PRK08410 159 RVAKIAQAFGAKVVYYSTSGKNKNEEYERVSLEELLKTS-DIISIHA---PLN-EKTKNLIAYKELKLL--KDGAILINV 231 (311)
T ss_pred HHHHHHhhcCCEEEEECCCccccccCceeecHHHHhhcC-CEEEEeC---CCC-chhhcccCHHHHHhC--CCCeEEEEC
Confidence 3456678999999998863210 110 11224444554 5555543 333 233566788999999 489999999
Q ss_pred CcchhH--HHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 85 GTGGTV--TGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 85 G~Gg~~--aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
|-|+++ ..+..+++. .... .+.++....
T Consensus 232 aRG~vVDe~AL~~AL~~--g~i~-AaLDV~~~E 261 (311)
T PRK08410 232 GRGGIVNEKDLAKALDE--KDIY-AGLDVLEKE 261 (311)
T ss_pred CCccccCHHHHHHHHHc--CCeE-EEEecCCCC
Confidence 999988 566777764 3566 777665443
No 94
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=70.34 E-value=47 Score=28.43 Aligned_cols=83 Identities=19% Similarity=0.151 Sum_probs=56.7
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHH-------HHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEE
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKK-------GEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFI 81 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~-------a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv 81 (225)
-.+.++.+|++|+.+++... .+..+. -.++.++. +...++ -|.+ -.=+..+..|.+++++ +.+++
T Consensus 161 vA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~l~ell~~s-Dii~l~---~Plt-~~T~hLin~~~l~~mk--~ga~l 232 (324)
T COG1052 161 VARRLKGFGMKVLYYDRSPN-PEAEKELGARYVDLDELLAES-DIISLH---CPLT-PETRHLINAEELAKMK--PGAIL 232 (324)
T ss_pred HHHHHhcCCCEEEEECCCCC-hHHHhhcCceeccHHHHHHhC-CEEEEe---CCCC-hHHhhhcCHHHHHhCC--CCeEE
Confidence 34566799999999986532 221111 34556665 555554 3444 3346778889999994 78999
Q ss_pred EecCcchhH--HHHHHHHHh
Q 027277 82 AGIGTGGTV--TGAGRFLKE 99 (225)
Q Consensus 82 ~~~G~Gg~~--aGi~~~~k~ 99 (225)
+-+|-|+++ ..+..++++
T Consensus 233 VNtaRG~~VDe~ALi~AL~~ 252 (324)
T COG1052 233 VNTARGGLVDEQALIDALKS 252 (324)
T ss_pred EECCCccccCHHHHHHHHHh
Confidence 999999988 777788875
No 95
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=69.38 E-value=49 Score=25.32 Aligned_cols=92 Identities=18% Similarity=0.168 Sum_probs=47.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcch
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGG 88 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~Gg 88 (225)
++.+...|-.|.+++++ -+...+.+..+.+++|+.-.+.-+..+.. ..-.. +|.+++. ..||.|+++.|+--
T Consensus 41 ~~~~~~~~~~ifllG~~--~~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~~~----~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 41 LRRAEQRGKRIFLLGGS--EEVLEKAAANLRRRYPGLRIVGYHHGYFD-EEEEE----AIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred HHHHHHcCCeEEEEeCC--HHHHHHHHHHHHHHCCCeEEEEecCCCCC-hhhHH----HHHHHHHHcCCCEEEEECCCCH
Confidence 34455667788888854 23444555566777776544432222222 22233 3333332 35999999999854
Q ss_pred hHHHHHHHHHhhCCCcEEEEE
Q 027277 89 TVTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 89 ~~aGi~~~~k~~~~~~~vigV 109 (225)
-=. .....+...+..-+++|
T Consensus 114 QE~-~~~~~~~~l~~~v~i~v 133 (172)
T PF03808_consen 114 QER-WIARHRQRLPAGVIIGV 133 (172)
T ss_pred HHH-HHHHHHHHCCCCEEEEE
Confidence 332 12233333333445555
No 96
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=68.82 E-value=11 Score=29.08 Aligned_cols=99 Identities=17% Similarity=0.069 Sum_probs=58.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHH-HH------HHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccE
Q 027277 7 IERRIILRALGAEVYLADPAVGFEG-FV------KKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~~~~~~~-~~------~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~ 79 (225)
+.-.++++.+|++|+.+++...-.. .. ....++.++- +...++--.++.+ ...+..|.+++++ +++
T Consensus 49 ~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~a-Div~~~~plt~~T----~~li~~~~l~~mk--~ga 121 (178)
T PF02826_consen 49 RAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQA-DIVSLHLPLTPET----RGLINAEFLAKMK--PGA 121 (178)
T ss_dssp HHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH--SEEEE-SSSSTTT----TTSBSHHHHHTST--TTE
T ss_pred CeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchh-hhhhhhhcccccc----ceeeeeeeeeccc--cce
Confidence 3456778999999999987532111 00 1123444444 4544432223333 4566788999994 789
Q ss_pred EEEecCcchhH--HHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 80 FIAGIGTGGTV--TGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 80 iv~~~G~Gg~~--aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
+++.++-|+++ ..+..+++. ....=.+.++...
T Consensus 122 ~lvN~aRG~~vde~aL~~aL~~--g~i~ga~lDV~~~ 156 (178)
T PF02826_consen 122 VLVNVARGELVDEDALLDALES--GKIAGAALDVFEP 156 (178)
T ss_dssp EEEESSSGGGB-HHHHHHHHHT--TSEEEEEESS-SS
T ss_pred EEEeccchhhhhhhHHHHHHhh--ccCceEEEECCCC
Confidence 99999999988 556666654 3455555554444
No 97
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=67.96 E-value=29 Score=25.96 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=16.4
Q ss_pred HHHHHhh-CCCccEEEEecCcch---hHHHHHHHHHhhCC
Q 027277 67 PEIWNDS-GGKVDAFIAGIGTGG---TVTGAGRFLKEKNP 102 (225)
Q Consensus 67 ~Ei~~Ql-~~~~d~iv~~~G~Gg---~~aGi~~~~k~~~~ 102 (225)
.|+..|. ....|.|.++.=.|+ ++.++...+++.+.
T Consensus 53 ~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~ 92 (143)
T COG2185 53 EEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEALREAGV 92 (143)
T ss_pred HHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHHHHHhCC
Confidence 4444443 234555555533332 33455555555543
No 98
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=67.28 E-value=13 Score=28.76 Aligned_cols=39 Identities=31% Similarity=0.334 Sum_probs=29.3
Q ss_pred HHHHHHhh---CCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEE
Q 027277 66 GPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 66 ~~Ei~~Ql---~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigV 109 (225)
..+.+.+| +-.||.|+.=.|=|-++ .+|+.+|++++++-
T Consensus 53 v~~a~~~L~~~Gf~PDvI~~H~GWGe~L-----flkdv~P~a~li~Y 94 (171)
T PF12000_consen 53 VARAARQLRAQGFVPDVIIAHPGWGETL-----FLKDVFPDAPLIGY 94 (171)
T ss_pred HHHHHHHHHHcCCCCCEEEEcCCcchhh-----hHHHhCCCCcEEEE
Confidence 33444444 34599999888877665 89999999999887
No 99
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=66.05 E-value=63 Score=25.36 Aligned_cols=129 Identities=19% Similarity=0.149 Sum_probs=71.5
Q ss_pred HHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc--C-----CCCccccccccCCCCCcc--ccc
Q 027277 70 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN--G-----GQPGKHLIQGIGAGVIPP--VLD 140 (225)
Q Consensus 70 ~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~--~-----~~~~~~~~~gl~~~~~~~--~~~ 140 (225)
+..|...++-++.=+|.|+-..++-.+ ...|+.|||++|-.....-. . +.+.-..+.|-++...+. ..+
T Consensus 27 ls~L~~~~g~~l~DIGaGtGsi~iE~a--~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~d 104 (187)
T COG2242 27 LSKLRPRPGDRLWDIGAGTGSITIEWA--LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPD 104 (187)
T ss_pred HHhhCCCCCCEEEEeCCCccHHHHHHH--HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCC
Confidence 355656677788877776665565544 55899999999976543211 0 111112234433322211 223
Q ss_pred ccCcCeEEEeCHHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCCCCCEEEEEecCCCC
Q 027277 141 VAMLDEVITVSSEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGE 204 (225)
Q Consensus 141 ~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~ 204 (225)
.-+++++ .+-+++++++....+.-|.++-- .+=-.++.+++..++.... .++-+.-+.|.
T Consensus 105 aiFIGGg--~~i~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~--ei~~v~is~~~ 165 (187)
T COG2242 105 AIFIGGG--GNIEEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR--EIVQVQISRGK 165 (187)
T ss_pred EEEECCC--CCHHHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc--eEEEEEeecce
Confidence 3345555 78889999988877776766554 3334444455544443222 55555435443
No 100
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=65.11 E-value=67 Score=26.55 Aligned_cols=43 Identities=19% Similarity=0.180 Sum_probs=27.1
Q ss_pred hHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 65 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 65 ~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
...+++++- .++|+|||. +.....|+.+++++.+ .++.|+|.+
T Consensus 192 ~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g~~vp~di~vig~D 238 (305)
T cd06324 192 QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAGRKPGRDVLFGGVN 238 (305)
T ss_pred HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcCCCcCCCEEEEecC
Confidence 334555443 458888764 4556678888888765 246676664
No 101
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=61.31 E-value=40 Score=26.79 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=32.8
Q ss_pred CCCCChHhhHhhhHHHHH----HhhC------CCccEEEEecC-cchhHHHHHH----HHHhhCCCcEEEEEe
Q 027277 53 ENPANPEIHYETTGPEIW----NDSG------GKVDAFIAGIG-TGGTVTGAGR----FLKEKNPNIKVYGIE 110 (225)
Q Consensus 53 ~~~~~~~~g~~t~~~Ei~----~Ql~------~~~d~iv~~~G-~Gg~~aGi~~----~~k~~~~~~~vigVe 110 (225)
+...+|..||.+.+.+++ +++. ..+|.+++..| +|||=+|++. .+++.+|+..++.+-
T Consensus 90 g~g~n~~~G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ 162 (216)
T PF00091_consen 90 GSGNNWAVGYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFS 162 (216)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEE
T ss_pred cccccccccccccccccccccccccchhhccccccccceecccccceeccccccccchhhhccccccceeecc
Confidence 445566778886644443 3321 34777666655 4455555554 445566666666553
No 102
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=61.24 E-value=30 Score=24.48 Aligned_cols=44 Identities=20% Similarity=0.391 Sum_probs=31.8
Q ss_pred hHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 65 TGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 65 ~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.+.++.++++ ...|++..-+|.+.- .+....|++.|+++.+...
T Consensus 7 aa~~~A~~~~--ak~Ivv~T~sG~ta~----~isk~RP~~pIiavt~~~~ 50 (117)
T PF02887_consen 7 AAVELAEDLN--AKAIVVFTESGRTAR----LISKYRPKVPIIAVTPNES 50 (117)
T ss_dssp HHHHHHHHHT--ESEEEEE-SSSHHHH----HHHHT-TSSEEEEEESSHH
T ss_pred HHHHHHHhcC--CCEEEEECCCchHHH----HHHhhCCCCeEEEEcCcHH
Confidence 3568888884 789999999988754 4444568999999987654
No 103
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=60.19 E-value=1.1e+02 Score=26.12 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=37.8
Q ss_pred HhCCCeEEeC-CCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEEe
Q 027277 41 NRTPNGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGIE 110 (225)
Q Consensus 41 ~~~~~~~~~~-~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigVe 110 (225)
+++++.-.+. ++.+... ..++. ...++++.- +++|.||++ +.....|+..++++.+. ++.|+|..
T Consensus 176 ~~~p~~~vv~~~~~~~d~-~~a~~-~~~~lL~~~-pdi~aI~~~--~~~~~~Ga~~Al~~~g~~~v~VvG~D 242 (336)
T PRK15408 176 KEHPGWEIVTTQFGYNDA-TKSLQ-TAEGILKAY-PDLDAIIAP--DANALPAAAQAAENLKRDKVAIVGFS 242 (336)
T ss_pred hhCCCCEEEeecCCCCcH-HHHHH-HHHHHHHHC-CCCcEEEEC--CCccHHHHHHHHHhCCCCCEEEEEeC
Confidence 3455554444 2332222 33433 445666554 578999987 33444588899988754 57777764
No 104
>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs. Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate
Probab=59.00 E-value=92 Score=25.24 Aligned_cols=40 Identities=28% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEEe
Q 027277 68 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIE 110 (225)
Q Consensus 68 Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigVe 110 (225)
+++++- ++||+|++. +..+..|+..++++.+- ++.|+|.+
T Consensus 183 ~~l~~~-~~~~ai~~~--nd~~A~g~l~al~~~G~~~dv~vvg~d 224 (280)
T cd06303 183 DILSNN-PDVDFIYAC--STDIALGASDALKELGREDDILINGWG 224 (280)
T ss_pred HHHHhC-CCCcEEEEC--CcHHHHHHHHHHHHcCCCCCcEEEecC
Confidence 444332 357877764 44456688888887653 46677664
No 105
>PRK06202 hypothetical protein; Provisional
Probab=58.43 E-value=15 Score=29.48 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=29.2
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
...+=++||+|.+..-+...++..+++.+|+|++++...
T Consensus 62 ~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~ 100 (232)
T PRK06202 62 LTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRA 100 (232)
T ss_pred cEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHH
Confidence 356678888888776666666666777899999987653
No 106
>PRK07478 short chain dehydrogenase; Provisional
Probab=58.04 E-value=94 Score=24.74 Aligned_cols=71 Identities=15% Similarity=0.057 Sum_probs=39.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+... -+...+...++.+......++ +. |... ......+..++.++. +.+|++|..+|.
T Consensus 23 a~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~li~~ag~ 93 (254)
T PRK07478 23 AKLFAREGAKVVVGARR--QAELDQLVAEIRAEGGEAVAL-AG-DVRD-EAYAKALVALAVERF-GGLDIAFNNAGT 93 (254)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEE-Ec-CCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCC
Confidence 44556679999988753 222223333333322122222 22 2333 344556667777777 479999999885
No 107
>PRK12743 oxidoreductase; Provisional
Probab=57.45 E-value=98 Score=24.75 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=39.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... +.+...+...++.. .+..+...+. |-.. ...-.....|+.+++ +.+|.+|...|..
T Consensus 19 a~~l~~~G~~V~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-~~id~li~~ag~~ 91 (256)
T PRK12743 19 ALLLAQQGFDIGITWHS-DEEGAKETAEEVRS-HGVRAEIRQL-DLSD-LPEGAQALDKLIQRL-GRIDVLVNNAGAM 91 (256)
T ss_pred HHHHHHCCCEEEEEeCC-ChHHHHHHHHHHHh-cCCceEEEEc-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 44555679999887532 12222223333332 2222222222 2333 344555667787877 4799999998854
No 108
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.53 E-value=1e+02 Score=24.80 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=20.9
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigVe 110 (225)
.||+|||.- ..+..|+..++++.+. ++.|+|.+
T Consensus 183 ~~~ai~~~n--d~~a~g~~~al~~~g~~di~vvgfd 216 (272)
T cd06313 183 QLDGAFCHN--DSMALAAYQIMKAAGRTKIVIGGVD 216 (272)
T ss_pred CCCEEEECC--CcHHHHHHHHHHHcCCCceEEEeec
Confidence 477777753 3455677788877653 56666654
No 109
>PRK15452 putative protease; Provisional
Probab=56.11 E-value=1.5e+02 Score=26.57 Aligned_cols=94 Identities=17% Similarity=0.060 Sum_probs=53.0
Q ss_pred hHHHHHHHHHcCCEEEEeCCCC--------Ch-HHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-
Q 027277 6 SIERRIILRALGAEVYLADPAV--------GF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG- 75 (225)
Q Consensus 6 ~~~k~~~~~~~GA~v~~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~- 75 (225)
+.++++..-.+||+-++++... ++ .+-++.+.+++++++-..|+.- |... .........+.++++..
T Consensus 12 ~~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~--n~i~-~e~el~~~~~~l~~l~~~ 88 (443)
T PRK15452 12 TLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVV--NIAP-HNAKLKTFIRDLEPVIAM 88 (443)
T ss_pred CHHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEe--cCcC-CHHHHHHHHHHHHHHHhC
Confidence 3455666667899999986531 11 1334556666777644555431 1111 12222223344555532
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 108 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vig 108 (225)
.+|.|++.- .|+...+++..|+.+|++
T Consensus 89 gvDgvIV~d------~G~l~~~ke~~p~l~ih~ 115 (443)
T PRK15452 89 KPDALIMSD------PGLIMMVREHFPEMPIHL 115 (443)
T ss_pred CCCEEEEcC------HHHHHHHHHhCCCCeEEE
Confidence 489999872 367778888777777665
No 110
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=54.78 E-value=49 Score=26.32 Aligned_cols=158 Identities=16% Similarity=0.094 Sum_probs=67.6
Q ss_pred HHHHHHcCCEEEE---eCCCCChHHHHHHHHHHHHhCCCeEEeCCCC-CCCChHhhHhhhHHHHHHhhCCCccEEEEecC
Q 027277 10 RIILRALGAEVYL---ADPAVGFEGFVKKGEEILNRTPNGYILGQFE-NPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 85 (225)
Q Consensus 10 ~~~~~~~GA~v~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G 85 (225)
++.+++.-..+.. .-...+.+++.+..+++.+.-++...+.-.. +|. |.....||..|.+ |.||=-..
T Consensus 18 ~ei~eAaeG~v~vGVlskny~tve~av~~vk~y~~~~~~~vSVGLGaGDp~-----Q~~~Va~Ia~~~~--P~HVNQvF- 89 (218)
T PF07071_consen 18 KEIYEAAEGHVVVGVLSKNYPTVEEAVADVKEYQAEIDNAVSVGLGAGDPN-----QWKMVAEIAAQTQ--PQHVNQVF- 89 (218)
T ss_dssp HHHHHHTTT-EEEEEEGGGSSSHHHHHHHHHHHHHHTTT-EEEE-STT-GG-----GHHHHHHHHHHH----SEE--BG-
T ss_pred HHHHHHhcCcEEEEEEeCCCCCHHHHHHHHHHHHHhCCCceEEecCCCCHH-----HHHHHHHHHHHcC--CCcccccc-
Confidence 3444555444432 2222356788899999988865566554332 232 4555779999985 44443322
Q ss_pred cchhHHHHHHHHHhhCCCcEE-EEEeCCCCccccCCCCccccccccCCCCCcc----cccccCcCeEEE------eCHHH
Q 027277 86 TGGTVTGAGRFLKEKNPNIKV-YGIEPSESAVLNGGQPGKHLIQGIGAGVIPP----VLDVAMLDEVIT------VSSEE 154 (225)
Q Consensus 86 ~Gg~~aGi~~~~k~~~~~~~v-igVe~~~~~~~~~~~~~~~~~~gl~~~~~~~----~~~~~~~~~~~~------v~d~e 154 (225)
+-+|..+++-. ..++-| --|.|.+.+-+..=..++....+- ...++- .+.++.....+. ....|
T Consensus 90 ---tgag~t~g~Lg-~~~t~VNaLvsPTG~~G~VkIsTGp~Ss~~~-~~~V~vetAiaml~dmG~~SiKffPm~Gl~~le 164 (218)
T PF07071_consen 90 ---TGAGYTRGLLG-QNETIVNALVSPTGTPGKVKISTGPLSSQGP-DAIVPVETAIAMLKDMGGSSIKFFPMGGLKHLE 164 (218)
T ss_dssp ---GGHHHHHHHHT-TS-SEEEEEEBE-SSTTEEE---STTHHGSS---EEEHHHHHHHHHHTT--EEEE---TTTTTHH
T ss_pred ---cchHHHHHHhC-CCCeEEEEEEcCCCCceEEEeccCCccccCC-CccccHHHHHHHHHHcCCCeeeEeecCCcccHH
Confidence 22233444432 233433 235666654221000111100000 000000 011122222111 12333
Q ss_pred HHHHHHHHHHhcCCeecchHHHHHHH
Q 027277 155 AIETSKLLALKEGLLVGISSGAAAAA 180 (225)
Q Consensus 155 ~~~a~~~l~~~eGi~~epssgaalaa 180 (225)
-+.++.+.+.++|+.+||++|.-+--
T Consensus 165 E~~avAkA~a~~g~~lEPTGGIdl~N 190 (218)
T PF07071_consen 165 ELKAVAKACARNGFTLEPTGGIDLDN 190 (218)
T ss_dssp HHHHHHHHHHHCT-EEEEBSS--TTT
T ss_pred HHHHHHHHHHHcCceeCCcCCcCHHH
Confidence 47777777788999999999875533
No 111
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=54.29 E-value=38 Score=27.02 Aligned_cols=46 Identities=28% Similarity=0.273 Sum_probs=25.7
Q ss_pred HHHHHHhhCCCccEEE-EecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 66 GPEIWNDSGGKVDAFI-AGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 66 ~~Ei~~Ql~~~~d~iv-~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
-.||+-|+ +||.|| +.+=.||.+.=.+.-++.++++.+|+||+-.-
T Consensus 24 ~qeli~~~--kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdi 70 (206)
T PF04989_consen 24 YQELIWEL--KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDI 70 (206)
T ss_dssp HHHHHHHH----SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-G
T ss_pred HHHHHHHh--CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCc
Confidence 34777777 478665 22334666655555566677889999999853
No 112
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=54.13 E-value=35 Score=28.85 Aligned_cols=72 Identities=14% Similarity=0.137 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHh-cCCeecchHHHHHHHHHHHhhcCCCC-CCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 152 SEEAIETSKLLALK-EGLLVGISSGAAAAAAIRVAKRPENA-GKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 152 d~e~~~a~~~l~~~-eGi~~epssgaalaa~~~~~~~~~~~-~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
+.|++.-+|+.+.+ +...+--|+|+==..++.++.+...+ .-.+-+++.+.|.++.+++-|.+...++.|++
T Consensus 5 e~esi~ilRe~~~~f~~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~~F~Et~efrd~~a~~~gl~ 78 (294)
T TIGR02039 5 ESEAIHIIREVAAEFERPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGWKFREMIAFRDHMVAKYGLR 78 (294)
T ss_pred HHHHHHHHHHHHHhcCCcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCC
Confidence 45777778887665 34555568888777777777654222 23455555589999888888888888888875
No 113
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=51.59 E-value=1.3e+02 Score=24.52 Aligned_cols=73 Identities=19% Similarity=0.194 Sum_probs=43.0
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 8 ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.-.+.+...|++|+.+... +...+...++.++.+... .-+. |-.. ......+..++.++. +.+|.+|..+|..
T Consensus 27 aia~~la~~G~~V~l~~r~---~~~~~~~~~l~~~~~~~~-~~~~-Dl~~-~~~v~~~~~~~~~~~-g~iD~lv~nAG~~ 99 (272)
T PRK08159 27 GIAKACRAAGAELAFTYQG---DALKKRVEPLAAELGAFV-AGHC-DVTD-EASIDAVFETLEKKW-GKLDFVVHAIGFS 99 (272)
T ss_pred HHHHHHHHCCCEEEEEcCc---hHHHHHHHHHHHhcCCce-EEec-CCCC-HHHHHHHHHHHHHhc-CCCcEEEECCccc
Confidence 3445566789999887642 122334445554442222 2233 3333 455566667777777 5799999998854
No 114
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=51.33 E-value=1.3e+02 Score=24.15 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=17.9
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGI 109 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigV 109 (225)
++|+|++. +.....|+..++++.+. ++.|+|.
T Consensus 182 ~~~ai~~~--~d~~a~~~~~al~~~g~~~di~vig~ 215 (275)
T cd06320 182 DLKAIYCN--NDTMALGVVEAVKNAGKQGKVLVVGT 215 (275)
T ss_pred CccEEEEC--CchhHHHHHHHHHhcCCCCCeEEEec
Confidence 46666554 33445567777766553 4555554
No 115
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=51.13 E-value=65 Score=28.10 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=47.8
Q ss_pred HHHHHcC-CEEEEeCCCCCh-HHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcch
Q 027277 11 IILRALG-AEVYLADPAVGF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 88 (225)
Q Consensus 11 ~~~~~~G-A~v~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg 88 (225)
-+++.+| .++.+++...-| .+..+.++++.++.++...-.-|- |.. ..-+..+..+|.+. +||.||-.+ .|.
T Consensus 127 ~~~~~~G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~-plg-~td~~~ii~~I~~~---~Pd~V~stl-vG~ 200 (363)
T PF13433_consen 127 YLLENFGAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYL-PLG-ATDFDPIIAEIKAA---KPDFVFSTL-VGD 200 (363)
T ss_dssp HHHHHS--SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE--S--HHHHHHHHHHHHHH---T-SEEEEE---TT
T ss_pred HHHhccCCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEe-cCC-chhHHHHHHHHHhh---CCCEEEEeC-cCC
Confidence 3567899 899999852111 366777888888876543332221 222 33445555565443 589666555 556
Q ss_pred hHHHHHHHHHhhC
Q 027277 89 TVTGAGRFLKEKN 101 (225)
Q Consensus 89 ~~aGi~~~~k~~~ 101 (225)
......+.++..+
T Consensus 201 s~~aF~r~~~~aG 213 (363)
T PF13433_consen 201 SNVAFYRAYAAAG 213 (363)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHcC
Confidence 6667788888764
No 116
>PRK06932 glycerate dehydrogenase; Provisional
Probab=50.02 E-value=51 Score=28.00 Aligned_cols=84 Identities=23% Similarity=0.178 Sum_probs=53.3
Q ss_pred HHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 9 RRIILRALGAEVYLADPAVG--FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
-.++++.+|++|+.+++... .........++.++- +...++- |.+ ..-+.-+..|.++++ ++.++++-+|-
T Consensus 162 va~~l~~fg~~V~~~~~~~~~~~~~~~~~l~ell~~s-Div~l~~---Plt-~~T~~li~~~~l~~m--k~ga~lIN~aR 234 (314)
T PRK06932 162 VGRLAQALGMKVLYAEHKGASVCREGYTPFEEVLKQA-DIVTLHC---PLT-ETTQNLINAETLALM--KPTAFLINTGR 234 (314)
T ss_pred HHHHHhcCCCEEEEECCCcccccccccCCHHHHHHhC-CEEEEcC---CCC-hHHhcccCHHHHHhC--CCCeEEEECCC
Confidence 34667899999998875321 000111234444554 5555542 333 334566778999999 47899999999
Q ss_pred chhH--HHHHHHHHh
Q 027277 87 GGTV--TGAGRFLKE 99 (225)
Q Consensus 87 Gg~~--aGi~~~~k~ 99 (225)
|+.+ ..+..+++.
T Consensus 235 G~~Vde~AL~~aL~~ 249 (314)
T PRK06932 235 GPLVDEQALLDALEN 249 (314)
T ss_pred ccccCHHHHHHHHHc
Confidence 9987 666666663
No 117
>PRK13243 glyoxylate reductase; Reviewed
Probab=49.37 E-value=1e+02 Score=26.38 Aligned_cols=83 Identities=18% Similarity=0.129 Sum_probs=46.9
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHH------HHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEE
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVK------KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIA 82 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~ 82 (225)
-.+.++.+|++|+.+++...-..... ...++.++- +...++- |.+ ..-...+..|.++++ +++.+++
T Consensus 165 vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~a-DiV~l~l---P~t-~~T~~~i~~~~~~~m--k~ga~lI 237 (333)
T PRK13243 165 VARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRES-DFVSLHV---PLT-KETYHMINEERLKLM--KPTAILV 237 (333)
T ss_pred HHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhC-CEEEEeC---CCC-hHHhhccCHHHHhcC--CCCeEEE
Confidence 34667889999998876321111000 123334443 4544432 222 223444566788887 4789999
Q ss_pred ecCcchhH--HHHHHHHH
Q 027277 83 GIGTGGTV--TGAGRFLK 98 (225)
Q Consensus 83 ~~G~Gg~~--aGi~~~~k 98 (225)
-++.|+.+ ..+..+++
T Consensus 238 N~aRg~~vd~~aL~~aL~ 255 (333)
T PRK13243 238 NTARGKVVDTKALVKALK 255 (333)
T ss_pred ECcCchhcCHHHHHHHHH
Confidence 99999887 33444443
No 118
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=49.20 E-value=1.3e+02 Score=24.22 Aligned_cols=81 Identities=19% Similarity=0.035 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCC--CCCCCChHhhHh--hhHHHHHHhhC-CCcc
Q 027277 4 TYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQ--FENPANPEIHYE--TTGPEIWNDSG-GKVD 78 (225)
Q Consensus 4 ~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~g~~--t~~~Ei~~Ql~-~~~d 78 (225)
+++..-++.++++||+-+.+-. ...++..+.-.++.+.+ |+-.++- .+=+.|..-|.. ...+++..++. +..|
T Consensus 104 Tts~Avv~aL~al~a~ri~vlT-PY~~evn~~e~ef~~~~-Gfeiv~~~~Lgi~dn~eigr~~P~~~y~lAk~~~~~~~D 181 (238)
T COG3473 104 TTSTAVVEALNALGAQRISVLT-PYIDEVNQREIEFLEAN-GFEIVDFKGLGITDNLEIGRQEPWAVYRLAKEVFTPDAD 181 (238)
T ss_pred echHHHHHHHHhhCcceEEEec-cchhhhhhHHHHHHHhC-CeEEEEeeccCCcccchhcccChHHHHHHHHHhcCCCCC
Confidence 3566778999999997544322 14566667777777776 5433321 111222122322 24567777763 5689
Q ss_pred EEEEecCc
Q 027277 79 AFIAGIGT 86 (225)
Q Consensus 79 ~iv~~~G~ 86 (225)
+||++|=.
T Consensus 182 aiFiSCTn 189 (238)
T COG3473 182 AIFISCTN 189 (238)
T ss_pred eEEEEeec
Confidence 99999643
No 119
>PRK06487 glycerate dehydrogenase; Provisional
Probab=48.93 E-value=1.7e+02 Score=24.88 Aligned_cols=96 Identities=16% Similarity=0.111 Sum_probs=58.2
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHH-HHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 8 ERRIILRALGAEVYLADPAVGFEG-FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.-.++++.+|++|+.+++...-.. ......++.++- +...++- |.+ ..=+.-+..|.+++| +++++++-+|-
T Consensus 162 ~vA~~l~~fgm~V~~~~~~~~~~~~~~~~l~ell~~s-Div~l~l---Plt-~~T~~li~~~~~~~m--k~ga~lIN~aR 234 (317)
T PRK06487 162 AVARLAEAFGMRVLIGQLPGRPARPDRLPLDELLPQV-DALTLHC---PLT-EHTRHLIGARELALM--KPGALLINTAR 234 (317)
T ss_pred HHHHHHhhCCCEEEEECCCCCcccccccCHHHHHHhC-CEEEECC---CCC-hHHhcCcCHHHHhcC--CCCeEEEECCC
Confidence 345667899999998875321000 011124455554 5555542 333 333566788999999 47899999999
Q ss_pred chhH--HHHHHHHHhhCCCcEEEEEeCC
Q 027277 87 GGTV--TGAGRFLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 87 Gg~~--aGi~~~~k~~~~~~~vigVe~~ 112 (225)
|+.+ ..+..+++. ....=.+.++.
T Consensus 235 G~vVde~AL~~AL~~--g~i~gAaLDVf 260 (317)
T PRK06487 235 GGLVDEQALADALRS--GHLGGAATDVL 260 (317)
T ss_pred ccccCHHHHHHHHHc--CCeeEEEeecC
Confidence 9987 566666663 23333444443
No 120
>PRK09701 D-allose transporter subunit; Provisional
Probab=48.93 E-value=1.6e+02 Score=24.52 Aligned_cols=90 Identities=9% Similarity=0.095 Sum_probs=47.0
Q ss_pred CEEEEeCCCC---ChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHH
Q 027277 18 AEVYLADPAV---GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAG 94 (225)
Q Consensus 18 A~v~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~ 94 (225)
.+|.++.+.. ...++.+-.++..+++++..+............++ ....+++++- ++||+|+|.- ..+..|+.
T Consensus 157 ~~i~~l~g~~~~~~~~~R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~-~~~~~I~~~~--d~~A~g~~ 232 (311)
T PRK09701 157 GEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKAL-DVATNVLQRN-PNIKAIYCAN--DTMAMGVA 232 (311)
T ss_pred CEEEEEECCCCCccHHHHHHHHHHHHHhCCCcEEEEecCCCCCHHHHH-HHHHHHHHhC-CCCCEEEECC--cchHHHHH
Confidence 5777663322 12344444455555553243322222222222333 2334555553 4689888664 34666889
Q ss_pred HHHHhhCC--CcEEEEEeC
Q 027277 95 RFLKEKNP--NIKVYGIEP 111 (225)
Q Consensus 95 ~~~k~~~~--~~~vigVe~ 111 (225)
.++++.+. ++.|+|++.
T Consensus 233 ~al~~~G~~~dv~vvg~d~ 251 (311)
T PRK09701 233 QAVANAGKTGKVLVVGTDG 251 (311)
T ss_pred HHHHHcCCCCCEEEEEeCC
Confidence 99987654 567777754
No 121
>PRK08862 short chain dehydrogenase; Provisional
Probab=48.87 E-value=1.3e+02 Score=23.75 Aligned_cols=72 Identities=14% Similarity=0.047 Sum_probs=39.4
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
...+...|++|+.+.+. .+...+...++.+.. .....-+.+ -.. ......+..++.++++..+|.+|..+|.
T Consensus 22 a~~la~~G~~V~~~~r~--~~~l~~~~~~i~~~~-~~~~~~~~D-~~~-~~~~~~~~~~~~~~~g~~iD~li~nag~ 93 (227)
T PRK08862 22 SCHFARLGATLILCDQD--QSALKDTYEQCSALT-DNVYSFQLK-DFS-QESIRHLFDAIEQQFNRAPDVLVNNWTS 93 (227)
T ss_pred HHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcC-CCeEEEEcc-CCC-HHHHHHHHHHHHHHhCCCCCEEEECCcc
Confidence 44556679999998753 222222223332222 222111222 223 3445566678888884379999999864
No 122
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=48.35 E-value=54 Score=27.78 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHh-cCCeecchHHHHHHHHHHHhhcCCCC-CCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 152 SEEAIETSKLLALK-EGLLVGISSGAAAAAAIRVAKRPENA-GKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 152 d~e~~~a~~~l~~~-eGi~~epssgaalaa~~~~~~~~~~~-~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
+.+++.-+++.+.+ +.+.+.-|+|+==..++.++.+...+ +-.+.+++.+.|..+..++-|.+...+..|++
T Consensus 13 e~esi~iLrea~~~f~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~~FpEt~ef~d~~a~~~gl~ 86 (301)
T PRK05253 13 EAESIHILREVAAEFENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGWKFPEMIEFRDRRAKELGLE 86 (301)
T ss_pred HHHHHHHHHHHHHhCCCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 45667777777664 45666668888777777776553222 22344555588887777766777777777765
No 123
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=48.18 E-value=1.8e+02 Score=25.15 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCCEEEEeCCCC--------Ch-HHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CC
Q 027277 7 IERRIILRALGAEVYLADPAV--------GF-EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GK 76 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~~~--------~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~ 76 (225)
..++...-.+||+.++++... ++ .+-++.+.+++.+++-.+|+-- |.........+ ..+.+.++. -.
T Consensus 16 l~~l~~ai~~GADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~--N~~~~~~~~~~-~~~~l~~l~e~G 92 (347)
T COG0826 16 LEDLKAAIAAGADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAV--NTLLHNDELET-LERYLDRLVELG 92 (347)
T ss_pred HHHHHHHHHcCCCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEe--ccccccchhhH-HHHHHHHHHHcC
Confidence 345555556899999998531 11 1236667777877744466532 22221122232 335555552 24
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEE
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 108 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vig 108 (225)
+|+|+++= -|+...+++.+|+.+++.
T Consensus 93 vDaviv~D------pg~i~l~~e~~p~l~ih~ 118 (347)
T COG0826 93 VDAVIVAD------PGLIMLARERGPDLPIHV 118 (347)
T ss_pred CCEEEEcC------HHHHHHHHHhCCCCcEEE
Confidence 89999862 377778888887766543
No 124
>PRK08703 short chain dehydrogenase; Provisional
Probab=47.47 E-value=1.3e+02 Score=23.70 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=37.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRT-PNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+.+.. +...+...++.+.. +...++ +.+-..........+..++.+++.+.+|.||..+|.
T Consensus 23 a~~l~~~g~~V~~~~r~~--~~~~~~~~~l~~~~~~~~~~~-~~D~~~~~~~~~~~~~~~i~~~~~~~id~vi~~ag~ 97 (239)
T PRK08703 23 AKAYAAAGATVILVARHQ--KKLEKVYDAIVEAGHPEPFAI-RFDLMSAEEKEFEQFAATIAEATQGKLDGIVHCAGY 97 (239)
T ss_pred HHHHHHcCCEEEEEeCCh--HHHHHHHHHHHHcCCCCcceE-EeeecccchHHHHHHHHHHHHHhCCCCCEEEEeccc
Confidence 344556799998887532 22222223332221 111111 111110002345555667777774579999999874
No 125
>PRK05867 short chain dehydrogenase; Provisional
Probab=47.35 E-value=1.4e+02 Score=23.67 Aligned_cols=72 Identities=14% Similarity=0.145 Sum_probs=38.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+..+ .+...+...++.... +.....+. |... ......+..++.+++ +.+|.+|..+|..
T Consensus 26 a~~l~~~G~~V~~~~r~--~~~~~~~~~~l~~~~-~~~~~~~~-D~~~-~~~~~~~~~~~~~~~-g~id~lv~~ag~~ 97 (253)
T PRK05867 26 ALAYVEAGAQVAIAARH--LDALEKLADEIGTSG-GKVVPVCC-DVSQ-HQQVTSMLDQVTAEL-GGIDIAVCNAGII 97 (253)
T ss_pred HHHHHHCCCEEEEEcCC--HHHHHHHHHHHHhcC-CeEEEEEc-cCCC-HHHHHHHHHHHHHHh-CCCCEEEECCCCC
Confidence 44556679999988753 222223333332222 22222222 2333 333444555666666 5799999998753
No 126
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=46.95 E-value=1.3e+02 Score=23.18 Aligned_cols=68 Identities=10% Similarity=0.104 Sum_probs=37.3
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcc
Q 027277 12 ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 87 (225)
Q Consensus 12 ~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~G 87 (225)
.....|..|.++++.. +...+.++.+.+++|+.-.+. +..+.. ..- -.+|.+++. ..||.|+++.|+=
T Consensus 43 ~~~~~~~~vfllG~~~--~v~~~~~~~l~~~yP~l~i~g-~~g~f~-~~~----~~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 43 RAGKEKLPIFLYGGKP--DVLQQLKVKLIKEYPKLKIVG-AFGPLE-PEE----RKAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred HHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCCEEEE-ECCCCC-hHH----HHHHHHHHHHcCCCEEEEEcCCc
Confidence 3445677888888532 334445556667777644332 122222 111 123455543 2499999999874
No 127
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=46.71 E-value=1.5e+02 Score=23.67 Aligned_cols=42 Identities=24% Similarity=0.236 Sum_probs=25.2
Q ss_pred HHHHhhCCCccEEEEecCcchhHHHHHHHHHhhC--CCcEEEEEeCC
Q 027277 68 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN--PNIKVYGIEPS 112 (225)
Q Consensus 68 Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~--~~~~vigVe~~ 112 (225)
+++++- +++|+|++. +.....|+..++++.+ .++.|+|.+..
T Consensus 175 ~~l~~~-~~~~aI~~~--~d~~a~g~~~al~~~g~~~dv~vvg~d~~ 218 (270)
T cd06308 175 ELLQAN-PDIDLVYAH--NDPMALGAYLAAKRAGREKEIKFIGIDGL 218 (270)
T ss_pred HHHHhC-CCCcEEEeC--CcHHHHHHHHHHHHcCCCCCcEEEEecCC
Confidence 444443 357877765 3345557888887765 35677777543
No 128
>PRK07035 short chain dehydrogenase; Provisional
Probab=46.36 E-value=1.5e+02 Score=23.52 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=38.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+... .+...+...++.+......++. . +... ......+..++.+++ +.+|.+|..+|.
T Consensus 25 ~~~l~~~G~~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~-~-D~~~-~~~~~~~~~~~~~~~-~~id~li~~ag~ 95 (252)
T PRK07035 25 AKLLAQQGAHVIVSSRK--LDGCQAVADAIVAAGGKAEALA-C-HIGE-MEQIDALFAHIRERH-GRLDILVNNAAA 95 (252)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEE-c-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCc
Confidence 44556679999988753 2222333333333221222222 1 2223 334455556666666 469999988874
No 129
>PRK08226 short chain dehydrogenase; Provisional
Probab=46.24 E-value=1.5e+02 Score=23.63 Aligned_cols=70 Identities=14% Similarity=0.186 Sum_probs=39.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+++.. +..+...++........++ +. |... ......+..++.+++ +.+|.||..+|.
T Consensus 23 a~~l~~~G~~Vv~~~r~~---~~~~~~~~~~~~~~~~~~~-~~-Dl~~-~~~v~~~~~~~~~~~-~~id~vi~~ag~ 92 (263)
T PRK08226 23 ARVFARHGANLILLDISP---EIEKLADELCGRGHRCTAV-VA-DVRD-PASVAAAIKRAKEKE-GRIDILVNNAGV 92 (263)
T ss_pred HHHHHHCCCEEEEecCCH---HHHHHHHHHHHhCCceEEE-EC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCc
Confidence 344556799999987532 2223333333222122222 22 2333 334455666777777 579999999884
No 130
>PRK06197 short chain dehydrogenase; Provisional
Probab=45.57 E-value=1.6e+02 Score=24.30 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=38.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.+. .+...+...++.+..++ .+...+. |... ..-...+..|+.++. +++|++|..+|..
T Consensus 33 a~~l~~~G~~vi~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~-Dl~d-~~~v~~~~~~~~~~~-~~iD~li~nAg~~ 106 (306)
T PRK06197 33 AAALAAKGAHVVLAVRN--LDKGKAAAARITAATPGADVTLQEL-DLTS-LASVRAAADALRAAY-PRIDLLINNAGVM 106 (306)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCceEEEEC-CCCC-HHHHHHHHHHHHhhC-CCCCEEEECCccc
Confidence 34455679999887742 22222223333332211 1211222 2333 334455666777776 5799999998853
No 131
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=45.26 E-value=1.4e+02 Score=25.63 Aligned_cols=84 Identities=21% Similarity=0.152 Sum_probs=53.8
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHH-------HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEE
Q 027277 9 RRIILRALGAEVYLADPAVGFEGF-------VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFI 81 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv 81 (225)
-.+.++.+|++|+.+++....+.. .....++.++- +...++- |.+ ..=++-+..|.+++|+ +.+++
T Consensus 157 va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~s-Div~lh~---PlT-~eT~g~i~~~~~a~MK--~gail 229 (324)
T COG0111 157 VAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEA-DILTLHL---PLT-PETRGLINAEELAKMK--PGAIL 229 (324)
T ss_pred HHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhC-CEEEEcC---CCC-cchhcccCHHHHhhCC--CCeEE
Confidence 345789999999999872211111 12234555555 5555542 333 2335667778889994 56799
Q ss_pred EecCcchhH--HHHHHHHHh
Q 027277 82 AGIGTGGTV--TGAGRFLKE 99 (225)
Q Consensus 82 ~~~G~Gg~~--aGi~~~~k~ 99 (225)
+-++-|++. ..+..+++.
T Consensus 230 IN~aRG~vVde~aL~~AL~~ 249 (324)
T COG0111 230 INAARGGVVDEDALLAALDS 249 (324)
T ss_pred EECCCcceecHHHHHHHHHc
Confidence 999999987 667777764
No 132
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=45.16 E-value=1e+02 Score=26.53 Aligned_cols=52 Identities=15% Similarity=0.223 Sum_probs=31.3
Q ss_pred hHHHHHHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCCeEEeCCCCCCCC
Q 027277 6 SIERRIILRALGAEVYLADPAVGFE-GFVKKGEEILNRTPNGYILGQFENPAN 57 (225)
Q Consensus 6 ~~~k~~~~~~~GA~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ 57 (225)
++.-.+..|.|||+|..++...+-. --.+...++++..++.+++-+.++...
T Consensus 104 g~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTg 156 (385)
T KOG2862|consen 104 GQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFVTHGDSSTG 156 (385)
T ss_pred HHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEEEecCcccc
Confidence 3455677899999999986421111 112334445555567888887765443
No 133
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=44.54 E-value=1.6e+02 Score=23.55 Aligned_cols=72 Identities=14% Similarity=0.006 Sum_probs=39.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
...+...|++|+.+.... +...+...++ ++.+..+..-+. |... ..-......++.+++ +.+|.+|..+|..
T Consensus 27 a~~l~~~G~~vv~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-~~id~li~~ag~~ 98 (265)
T PRK07097 27 AKAYAKAGATIVFNDINQ--ELVDKGLAAY-RELGIEAHGYVC-DVTD-EDGVQAMVSQIEKEV-GVIDILVNNAGII 98 (265)
T ss_pred HHHHHHCCCeEEEEeCCH--HHHHHHHHHH-HhcCCceEEEEc-CCCC-HHHHHHHHHHHHHhC-CCCCEEEECCCCC
Confidence 445667799998886432 2222222333 232222222233 2333 344455566777777 5799999999864
No 134
>PRK08643 acetoin reductase; Validated
Probab=44.41 E-value=1.6e+02 Score=23.37 Aligned_cols=72 Identities=10% Similarity=0.103 Sum_probs=39.2
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.++... +...+...++.+......++ + .|-.. ......+..++.++. +++|.+|...|..
T Consensus 19 a~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~-~-~Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 90 (256)
T PRK08643 19 AKRLVEDGFKVAIVDYNE--ETAQAAADKLSKDGGKAIAV-K-ADVSD-RDQVFAAVRQVVDTF-GDLNVVVNNAGVA 90 (256)
T ss_pred HHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCeEEEE-E-CCCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 445566799999887532 22222223332222122222 1 12333 344555666777777 5799999998764
No 135
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=43.91 E-value=24 Score=23.94 Aligned_cols=33 Identities=27% Similarity=0.485 Sum_probs=20.7
Q ss_pred EecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 82 AGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 82 ~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
+++|+|..+.-+...+ ..+++.+++||+.+...
T Consensus 4 lgcG~G~~~~~l~~~~-~~~~~~~~~gvD~s~~~ 36 (101)
T PF13649_consen 4 LGCGTGRVTRALARRF-DAGPSSRVIGVDISPEM 36 (101)
T ss_dssp ET-TTSHHHHHHHHHS------SEEEEEES-HHH
T ss_pred eecCCcHHHHHHHHHh-hhcccceEEEEECCHHH
Confidence 5788888888777776 33566899999877653
No 136
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.32 E-value=1.7e+02 Score=23.32 Aligned_cols=42 Identities=17% Similarity=0.415 Sum_probs=25.9
Q ss_pred HHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEEeC
Q 027277 67 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIEP 111 (225)
Q Consensus 67 ~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigVe~ 111 (225)
.+++++- +.||+||+.. ..+..|+..++++.+. ++.|+|.+-
T Consensus 175 ~~~l~~~-~~~~~i~~~~--d~~a~g~~~~l~~~g~~~di~vig~d~ 218 (273)
T cd06310 175 EDLLTAN-PDLKGIFGAN--EGSAVGAARAVRQAGKAGKVKVVGFDA 218 (273)
T ss_pred HHHHHhC-CCceEEEecC--chhHHHHHHHHHhcCCCCCeEEEEeCC
Confidence 3554443 3578777663 4456688888887654 566766643
No 137
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=42.69 E-value=81 Score=21.27 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=28.8
Q ss_pred HHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 027277 70 WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117 (225)
Q Consensus 70 ~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~ 117 (225)
+++.=...|.+|+=+..|..+--++-.++....+|-|+.|+..+.-.+
T Consensus 5 ~~~~~~~~d~~I~i~A~GivvR~iap~l~dK~~DPaVvvvde~g~~vI 52 (84)
T PF11760_consen 5 LRELFRRYDAIIFIMAAGIVVRAIAPLLKDKDTDPAVVVVDEDGRFVI 52 (84)
T ss_dssp HHHHCCC-SEEEEES-HHHHHHHHHHH---TTT--EEEEE-TT--EEE
T ss_pred HHHHHcCCCeEEEEeCcHHHHHHhChhhcccCCCCCEEEEeCCCCEEE
Confidence 334323478888888888888888888888888999999998887543
No 138
>PRK06139 short chain dehydrogenase; Provisional
Probab=42.40 E-value=2.1e+02 Score=24.24 Aligned_cols=73 Identities=12% Similarity=0.138 Sum_probs=39.5
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
-.+.+...|++|+.+... . +..+...+..++.+....+.+. |... ......+..++.++. +.+|.+|..+|.+
T Consensus 23 ia~~la~~G~~Vvl~~R~--~-~~l~~~~~~~~~~g~~~~~~~~-Dv~d-~~~v~~~~~~~~~~~-g~iD~lVnnAG~~ 95 (330)
T PRK06139 23 TAEAFARRGARLVLAARD--E-EALQAVAEECRALGAEVLVVPT-DVTD-ADQVKALATQAASFG-GRIDVWVNNVGVG 95 (330)
T ss_pred HHHHHHHCCCEEEEEECC--H-HHHHHHHHHHHhcCCcEEEEEe-eCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCcC
Confidence 345566779999988753 2 2333333323333222222222 2333 344455666666665 5799999998853
No 139
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.18 E-value=1.8e+02 Score=23.34 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 8 ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.-.+.+...|++|+.+.... +..+...++.++.+...++ +. |-.. ......+..++.++. +.+|.+|..+|..
T Consensus 27 a~a~~la~~G~~v~l~~r~~---~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~v~~~~~~~~~~~-g~ld~lv~nAg~~ 99 (258)
T PRK07533 27 GCARAFRALGAELAVTYLND---KARPYVEPLAEELDAPIFL-PL-DVRE-PGQLEAVFARIAEEW-GRLDFLLHSIAFA 99 (258)
T ss_pred HHHHHHHHcCCEEEEEeCCh---hhHHHHHHHHHhhccceEE-ec-CcCC-HHHHHHHHHHHHHHc-CCCCEEEEcCccC
Confidence 34455566799998887532 2222334444433222222 22 2333 344455556666666 5799999998753
No 140
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=42.14 E-value=1.7e+02 Score=23.07 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=19.3
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigVe 110 (225)
+||+|++. +..+..|+..++++.+. ++.|+|.+
T Consensus 181 ~~~ai~~~--~d~~a~~~~~~l~~~g~~di~iig~d 214 (268)
T cd06323 181 DIKGVFAQ--NDEMALGAIEALKAAGKDDVKVVGFD 214 (268)
T ss_pred CcCEEEEc--CCchHHHHHHHHHHcCCCCcEEEEeC
Confidence 46666553 33344467777776654 56666653
No 141
>PLN00220 tubulin beta chain; Provisional
Probab=42.13 E-value=35 Score=30.60 Aligned_cols=66 Identities=26% Similarity=0.354 Sum_probs=37.1
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhhC----------CCccEEEEecC-cchhHHHHHHHH----HhhCCCcEEEE--E
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDSG----------GKVDAFIAGIG-TGGTVTGAGRFL----KEKNPNIKVYG--I 109 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~----------~~~d~iv~~~G-~Gg~~aGi~~~~----k~~~~~~~vig--V 109 (225)
++....+...+|..||.+.|.|+.+++- +.++.+++..+ +|||=+|++..+ ++.+|+.-++. |
T Consensus 90 ~~~~~~gagnnwa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~v 169 (447)
T PLN00220 90 FVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSV 169 (447)
T ss_pred eEecccCCCCccCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeEE
Confidence 4444445566777788887887765431 23555555544 345656666544 55566543433 5
Q ss_pred eCC
Q 027277 110 EPS 112 (225)
Q Consensus 110 e~~ 112 (225)
-|.
T Consensus 170 ~P~ 172 (447)
T PLN00220 170 FPS 172 (447)
T ss_pred ECC
Confidence 553
No 142
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=42.04 E-value=42 Score=30.15 Aligned_cols=37 Identities=24% Similarity=0.238 Sum_probs=27.9
Q ss_pred EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
.+++.+|+|-+..-.+++.+..+...+|++||....+
T Consensus 190 VldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A 226 (448)
T PF05185_consen 190 VLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNA 226 (448)
T ss_dssp EEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHH
T ss_pred EEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhH
Confidence 6778888888877666776666778999999977654
No 143
>PRK06436 glycerate dehydrogenase; Provisional
Probab=41.78 E-value=92 Score=26.33 Aligned_cols=82 Identities=11% Similarity=0.167 Sum_probs=48.1
Q ss_pred HHHHHHcCCEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVG---FEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.++++.+|++|+.+++... .........++.++- +...++--.++. -+..+..+.+++++ +.++++-+|.
T Consensus 138 A~~l~afG~~V~~~~r~~~~~~~~~~~~~l~ell~~a-Div~~~lp~t~~----T~~li~~~~l~~mk--~ga~lIN~sR 210 (303)
T PRK06436 138 ALLAKAFGMNIYAYTRSYVNDGISSIYMEPEDIMKKS-DFVLISLPLTDE----TRGMINSKMLSLFR--KGLAIINVAR 210 (303)
T ss_pred HHHHHHCCCEEEEECCCCcccCcccccCCHHHHHhhC-CEEEECCCCCch----hhcCcCHHHHhcCC--CCeEEEECCC
Confidence 4567889999998886311 110011223444444 555554323332 24455678888884 6899999999
Q ss_pred chhH--HHHHHHHH
Q 027277 87 GGTV--TGAGRFLK 98 (225)
Q Consensus 87 Gg~~--aGi~~~~k 98 (225)
|+.+ ..+..+++
T Consensus 211 G~~vd~~aL~~aL~ 224 (303)
T PRK06436 211 ADVVDKNDMLNFLR 224 (303)
T ss_pred ccccCHHHHHHHHH
Confidence 9887 34444444
No 144
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.30 E-value=1.9e+02 Score=23.47 Aligned_cols=74 Identities=18% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 7 IERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
..-...+-..|++|+.+... ++..+...++.++.+...++ +. |-.. ......+..++.+++ +.+|.+|..+|.
T Consensus 23 ~aiA~~la~~Ga~V~~~~r~---~~~~~~~~~~~~~~g~~~~~-~~-Dv~d-~~~v~~~~~~~~~~~-g~iD~lVnnAG~ 95 (271)
T PRK06505 23 WGIAKQLAAQGAELAFTYQG---EALGKRVKPLAESLGSDFVL-PC-DVED-IASVDAVFEALEKKW-GKLDFVVHAIGF 95 (271)
T ss_pred HHHHHHHHhCCCEEEEecCc---hHHHHHHHHHHHhcCCceEE-eC-CCCC-HHHHHHHHHHHHHHh-CCCCEEEECCcc
Confidence 34445566789999988742 12222334444433222222 22 2333 344556666777777 579999999986
Q ss_pred c
Q 027277 87 G 87 (225)
Q Consensus 87 G 87 (225)
+
T Consensus 96 ~ 96 (271)
T PRK06505 96 S 96 (271)
T ss_pred C
Confidence 4
No 145
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.25 E-value=1.9e+02 Score=23.34 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=19.4
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYG 108 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vig 108 (225)
+||+|||+ +..+..|+..++++.+. ++.|+|
T Consensus 178 ~~~ai~~~--~d~~A~gvl~al~~~gl~vP~dvsvig 212 (269)
T cd06287 178 DLDALCVP--VDAFAVGAVRAATELGRAVPDQLRVVT 212 (269)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEe
Confidence 47777766 44566677777776542 345555
No 146
>PLN02928 oxidoreductase family protein
Probab=41.20 E-value=1.4e+02 Score=25.73 Aligned_cols=84 Identities=17% Similarity=0.113 Sum_probs=49.0
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHH-------------------HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHH
Q 027277 8 ERRIILRALGAEVYLADPAVGFEGF-------------------VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPE 68 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~~-------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 68 (225)
.-.+.++.+|++|+.+++...-... .....++.++- +...++- |.+ ..-..-+..|
T Consensus 173 ~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~a-DiVvl~l---Plt-~~T~~li~~~ 247 (347)
T PLN02928 173 ELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEA-DIVVLCC---TLT-KETAGIVNDE 247 (347)
T ss_pred HHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhC-CEEEECC---CCC-hHhhcccCHH
Confidence 3456678999999988753111000 01123444443 4444432 323 2224556678
Q ss_pred HHHhhCCCccEEEEecCcchhH--HHHHHHHH
Q 027277 69 IWNDSGGKVDAFIAGIGTGGTV--TGAGRFLK 98 (225)
Q Consensus 69 i~~Ql~~~~d~iv~~~G~Gg~~--aGi~~~~k 98 (225)
.++++ ++.++++-+|-|+.+ ..+..+++
T Consensus 248 ~l~~M--k~ga~lINvaRG~lVde~AL~~AL~ 277 (347)
T PLN02928 248 FLSSM--KKGALLVNIARGGLLDYDAVLAALE 277 (347)
T ss_pred HHhcC--CCCeEEEECCCccccCHHHHHHHHH
Confidence 88888 468899999999887 55555655
No 147
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=40.71 E-value=84 Score=26.81 Aligned_cols=72 Identities=10% Similarity=0.079 Sum_probs=49.0
Q ss_pred CHHHHHHHHHHHHHh-cCCeecchHHHHHHHHHHHhhcCCC--CCCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 151 SSEEAIETSKLLALK-EGLLVGISSGAAAAAAIRVAKRPEN--AGKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 151 ~d~e~~~a~~~l~~~-eGi~~epssgaalaa~~~~~~~~~~--~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
-+.++++-++..+.+ +.+.+--|+|+-=..++.++.+-.. ...--|+.+ +.|.+...++-|.+.+.++.|++
T Consensus 22 le~esi~ilrea~~~f~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~V-DTG~~FpEt~efrD~~a~~~gl~ 96 (312)
T PRK12563 22 LEAESIHILREVVAECSKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHV-DTTWKFREMIDFRDRRAKELGLD 96 (312)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEe-CCCCCCHHHHHHHHHHHHHhCCc
Confidence 456777778876654 3455544778877788887765311 112234444 99999999988999988888875
No 148
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=40.51 E-value=69 Score=25.46 Aligned_cols=50 Identities=22% Similarity=0.188 Sum_probs=37.5
Q ss_pred hHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 61 g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
.|...+.++-+++. +...+|++-|++|.+-.+.++..+. .-+++|+-|..
T Consensus 31 ~~~~~a~~lg~~la-~~g~~V~tGG~~GiMea~~~gA~~~--gg~~vGi~p~~ 80 (205)
T COG1611 31 EYYELARELGRELA-KRGLLVITGGGPGVMEAVARGALEA--GGLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHHHHH-hCCcEEEeCCchhhhhHHHHHHHHc--CCeEEEecCCC
Confidence 37778888888874 3347888888888888888888754 46889997653
No 149
>KOG3857 consensus Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=40.50 E-value=2.1e+02 Score=25.09 Aligned_cols=80 Identities=20% Similarity=0.293 Sum_probs=46.5
Q ss_pred CChHHHHHHHHHcCCE--EEEeCCCCChH--HHHHHHHHHHHhCCCeEEeCCCCCC-CChHhhHhhhHHHHHHhhCCCcc
Q 027277 4 TYSIERRIILRALGAE--VYLADPAVGFE--GFVKKGEEILNRTPNGYILGQFENP-ANPEIHYETTGPEIWNDSGGKVD 78 (225)
Q Consensus 4 ~~~~~k~~~~~~~GA~--v~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~g~~t~~~Ei~~Ql~~~~d 78 (225)
++..+--..+|.+||+ +++++. +.. -....+++..++++=.|-+ |++- .++..|-.+-+.|+++.- .+|
T Consensus 56 gv~~Evg~dikn~gaKk~llvTDk--ni~~~~~~~~a~~~L~~~~I~~~v--yD~v~~ePtv~s~~~alefak~~--~fD 129 (465)
T KOG3857|consen 56 GVLAEVGDDIKNLGAKKTLLVTDK--NIAKLGLVKVAQDSLEENGINVEV--YDKVQPEPTVGSVTAALEFAKKK--NFD 129 (465)
T ss_pred hhHHHHHHHHHhcCccceEEeeCC--ChhhcccHHHHHHHHHHcCCceEE--ecCccCCCchhhHHHHHHHHHhc--ccc
Confidence 3455666778999996 344453 332 2456667766666222222 2321 112346677788987542 466
Q ss_pred EEEEecCcchhH
Q 027277 79 AFIAGIGTGGTV 90 (225)
Q Consensus 79 ~iv~~~G~Gg~~ 90 (225)
.++++|+|+.+
T Consensus 130 -s~vaiGGGSa~ 140 (465)
T KOG3857|consen 130 -SFVAIGGGSAH 140 (465)
T ss_pred -eEEEEcCcchh
Confidence 47889988776
No 150
>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional
Probab=40.37 E-value=66 Score=27.13 Aligned_cols=33 Identities=33% Similarity=0.566 Sum_probs=22.9
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigVe 110 (225)
+||+||++ +..+..|+.+++++.+. ++.|+|++
T Consensus 225 ~~~ai~~~--~d~~A~gvl~al~~~Gl~~vpVvg~D 258 (330)
T PRK15395 225 KIEVVIAN--NDAMAMGAVEALKAHNKSSIPVFGVD 258 (330)
T ss_pred CeeEEEEC--CchHHHHHHHHHHhcCCCCCeEEeeC
Confidence 47777754 44566688888888776 66677764
No 151
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=40.28 E-value=2.2e+02 Score=23.80 Aligned_cols=48 Identities=25% Similarity=0.225 Sum_probs=32.6
Q ss_pred HHHHHHhhC-CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 027277 66 GPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 116 (225)
Q Consensus 66 ~~Ei~~Ql~-~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~ 116 (225)
..||++-+. ..++.+|++|-|.++++ ...+++.. ++.|+||.|.-.+.
T Consensus 56 ~~~i~~~l~~~~ik~lVIACNTASa~a--l~~LR~~~-~iPVvGviPaik~A 104 (269)
T COG0796 56 TLEIVDFLLERGIKALVIACNTASAVA--LEDLREKF-DIPVVGVIPAIKPA 104 (269)
T ss_pred HHHHHHHHHHcCCCEEEEecchHHHHH--HHHHHHhC-CCCEEEeccchHHH
Confidence 345554442 23999999998887775 45666655 67899998765543
No 152
>PRK08589 short chain dehydrogenase; Validated
Probab=40.03 E-value=2e+02 Score=23.25 Aligned_cols=71 Identities=23% Similarity=0.230 Sum_probs=39.6
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... +...+...++.+.. +.....+. |-.. ......+..++.+++ +.+|.+|..+|..
T Consensus 23 a~~l~~~G~~vi~~~r~---~~~~~~~~~~~~~~-~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-g~id~li~~Ag~~ 93 (272)
T PRK08589 23 AIALAQEGAYVLAVDIA---EAVSETVDKIKSNG-GKAKAYHV-DISD-EQQVKDFASEIKEQF-GRVDVLFNNAGVD 93 (272)
T ss_pred HHHHHHCCCEEEEEeCc---HHHHHHHHHHHhcC-CeEEEEEe-ecCC-HHHHHHHHHHHHHHc-CCcCEEEECCCCC
Confidence 34455679999998753 33333344443322 22222222 2223 333455566777777 5799999998853
No 153
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=40.01 E-value=70 Score=26.66 Aligned_cols=84 Identities=26% Similarity=0.261 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhh-CCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEE
Q 027277 30 EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS-GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 108 (225)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql-~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vig 108 (225)
++-++.|.++.++++.....|- .-|.++..-+.|+--.|..=- ++...+||++-+-=||++. .+-.|+..|++-+++
T Consensus 16 ed~~r~Ae~l~~~Yg~~~I~h~-tyPdnf~~e~EttIskI~~lAdDp~mKaIVv~q~vpGt~~a-f~kIkekRpDIl~ia 93 (275)
T PF12683_consen 16 EDEYRGAEELIKKYGDVMIKHV-TYPDNFMSEQETTISKIVSLADDPDMKAIVVSQAVPGTAEA-FRKIKEKRPDILLIA 93 (275)
T ss_dssp HHHHHHHHHHHHHHHHHEEEEE-E--TTGGGCHHHHHHHHHGGGG-TTEEEEEEE-SS---HHH-HHHHHHH-TTSEEEE
T ss_pred hHHHHHHHHHHHHhCcceEEEE-eCCCcccchHHHHHHHHHHhccCCCccEEEEeCCCcchHHH-HHHHHhcCCCeEEEc
Confidence 4556677777777743122222 235555556777777776522 2346799999888777765 456778899999999
Q ss_pred EeCCCCc
Q 027277 109 IEPSESA 115 (225)
Q Consensus 109 Ve~~~~~ 115 (225)
.+|...+
T Consensus 94 ~~~~EDp 100 (275)
T PF12683_consen 94 GEPHEDP 100 (275)
T ss_dssp SS--S-H
T ss_pred CCCcCCH
Confidence 8887765
No 154
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=39.99 E-value=1.6e+02 Score=25.19 Aligned_cols=83 Identities=12% Similarity=0.022 Sum_probs=49.7
Q ss_pred HHHHH-HcCCEEEEeCCCCChHHH------HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEE
Q 027277 10 RIILR-ALGAEVYLADPAVGFEGF------VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIA 82 (225)
Q Consensus 10 ~~~~~-~~GA~v~~~~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~ 82 (225)
.+.++ .||++|+.+++...-+.. .....++.++- +...++--.++. =..-+..|.++++ +++++++
T Consensus 161 a~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~s-Dvv~lh~plt~~----T~~li~~~~l~~m--k~ga~lI 233 (323)
T PRK15409 161 AQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQES-DFVCIILPLTDE----THHLFGAEQFAKM--KSSAIFI 233 (323)
T ss_pred HHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhC-CEEEEeCCCChH----HhhccCHHHHhcC--CCCeEEE
Confidence 34566 899999988753211100 01123444454 555554222332 2455677888888 4789999
Q ss_pred ecCcchhH--HHHHHHHHh
Q 027277 83 GIGTGGTV--TGAGRFLKE 99 (225)
Q Consensus 83 ~~G~Gg~~--aGi~~~~k~ 99 (225)
-++-|+++ ..+..+++.
T Consensus 234 N~aRG~vVde~AL~~AL~~ 252 (323)
T PRK15409 234 NAGRGPVVDENALIAALQK 252 (323)
T ss_pred ECCCccccCHHHHHHHHHc
Confidence 99999987 566666653
No 155
>PRK07062 short chain dehydrogenase; Provisional
Probab=39.96 E-value=1.9e+02 Score=23.06 Aligned_cols=73 Identities=16% Similarity=0.247 Sum_probs=39.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.+.. +...+...++.++.++ ....-+. |... ......+..++.++. +.+|.+|..+|.+
T Consensus 25 a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~~~~~-D~~~-~~~v~~~~~~~~~~~-g~id~li~~Ag~~ 98 (265)
T PRK07062 25 VELLLEAGASVAICGRDE--ERLASAEARLREKFPGARLLAARC-DVLD-EADVAAFAAAVEARF-GGVDMLVNNAGQG 98 (265)
T ss_pred HHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhhCCCceEEEEEe-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCCC
Confidence 445556799999887532 2222233334333322 2222222 2333 233444555666666 5699999998864
No 156
>PRK05866 short chain dehydrogenase; Provisional
Probab=39.78 E-value=2.2e+02 Score=23.55 Aligned_cols=71 Identities=13% Similarity=0.091 Sum_probs=35.8
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
+.+...|++|+.+... .+...+...++........++ +.+ ... ..-...+..++.+++ +.+|.+|.++|.+
T Consensus 58 ~~La~~G~~Vi~~~R~--~~~l~~~~~~l~~~~~~~~~~-~~D-l~d-~~~v~~~~~~~~~~~-g~id~li~~AG~~ 128 (293)
T PRK05866 58 EQFARRGATVVAVARR--EDLLDAVADRITRAGGDAMAV-PCD-LSD-LDAVDALVADVEKRI-GGVDILINNAGRS 128 (293)
T ss_pred HHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEE-Ecc-CCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 3455568898888753 222222222332222122222 222 222 223344455666666 5799999998865
No 157
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=39.63 E-value=2e+02 Score=23.01 Aligned_cols=71 Identities=20% Similarity=0.227 Sum_probs=38.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.+. .+...+...++ ++.+..+++ +. |... ......+..++.+++ +.+|.+|..+|..
T Consensus 17 a~~l~~~G~~V~~~~r~--~~~~~~~~~~l-~~~~~~~~~-~~-Dv~d-~~~~~~~~~~~~~~~-g~id~li~naG~~ 87 (259)
T PRK08340 17 ARELLKKGARVVISSRN--EENLEKALKEL-KEYGEVYAV-KA-DLSD-KDDLKNLVKEAWELL-GGIDALVWNAGNV 87 (259)
T ss_pred HHHHHHcCCEEEEEeCC--HHHHHHHHHHH-HhcCCceEE-Ec-CCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCCC
Confidence 34455679999988753 22222223333 222232222 22 2333 344555666777777 5799999998853
No 158
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=39.40 E-value=63 Score=28.90 Aligned_cols=51 Identities=16% Similarity=0.231 Sum_probs=36.9
Q ss_pred HhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 62 YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 62 ~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
.++++ .+.+.++-.+=.|+=+.|-..+++.+..||+.+.|+++|-||=-..
T Consensus 100 ~gSTA-~lAk~l~~PVvLVid~~~~s~S~AAiv~G~~~fdp~v~iaGVIlNr 150 (451)
T COG1797 100 TGSTA-DLAKLLGAPVVLVVDASGLSRSVAAIVKGFKHFDPDVNIAGVILNR 150 (451)
T ss_pred CCCHH-HHHHHhCCCEEEEEeCcchhHHHHHHHHHHHhcCCCCceEEEEEec
Confidence 34443 7888885433344445666789999999999999999999985443
No 159
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=39.12 E-value=2.1e+02 Score=23.12 Aligned_cols=42 Identities=17% Similarity=0.002 Sum_probs=24.6
Q ss_pred HHHHHHhhCCCcc-EEEEecCcchhHHHHHHHHHhhCCCcEEEEE
Q 027277 66 GPEIWNDSGGKVD-AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 66 ~~Ei~~Ql~~~~d-~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigV 109 (225)
.-||.+-+.-..| .=+.|++.+| ....+.++.-.|+++++.+
T Consensus 122 psEi~~A~~~Ga~~vKlFPA~~~G--~~~ikal~~p~p~i~~~pt 164 (222)
T PRK07114 122 LSEIGYAEELGCEIVKLFPGSVYG--PGFVKAIKGPMPWTKIMPT 164 (222)
T ss_pred HHHHHHHHHCCCCEEEECcccccC--HHHHHHHhccCCCCeEEeC
Confidence 3477666543344 3477877766 3445556655677776544
No 160
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=38.70 E-value=2.1e+02 Score=23.02 Aligned_cols=75 Identities=21% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
-.+.+...|++|+.+.....-....+.+.++.++.....++ +. |-.. ......+..++.+++ +.+|.+|..+|..
T Consensus 24 ia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-Dl~d-~~~v~~~~~~~~~~~-g~iD~lv~nag~~ 98 (258)
T PRK07370 24 IAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFL-PC-DVQD-DAQIEETFETIKQKW-GKLDILVHCLAFA 98 (258)
T ss_pred HHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEe-ec-CcCC-HHHHHHHHHHHHHHc-CCCCEEEEccccc
Confidence 34455567999977643211011123333443332122222 22 2333 344555666777777 5799999998854
No 161
>PRK06720 hypothetical protein; Provisional
Probab=38.50 E-value=1.7e+02 Score=22.13 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=34.1
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecC
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 85 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G 85 (225)
..+...|++|+.++.. .+...+.+.++.+.. ......+. +... ......+..++.++. +.+|.+|..+|
T Consensus 34 ~~l~~~G~~V~l~~r~--~~~~~~~~~~l~~~~-~~~~~~~~-Dl~~-~~~v~~~v~~~~~~~-G~iDilVnnAG 102 (169)
T PRK06720 34 LLLAKQGAKVIVTDID--QESGQATVEEITNLG-GEALFVSY-DMEK-QGDWQRVISITLNAF-SRIDMLFQNAG 102 (169)
T ss_pred HHHHHCCCEEEEEECC--HHHHHHHHHHHHhcC-CcEEEEEc-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCC
Confidence 3344568888777642 222222233333222 22222232 2333 344555556666666 46888887765
No 162
>PRK07814 short chain dehydrogenase; Provisional
Probab=38.30 E-value=2.1e+02 Score=22.95 Aligned_cols=72 Identities=14% Similarity=0.167 Sum_probs=37.8
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
-.+.+...|++|+.+.+. .+...+...++........++ +. +..+ ......+..++.+++ +++|.||..+|.
T Consensus 26 ~a~~l~~~G~~Vi~~~r~--~~~~~~~~~~l~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~Ag~ 97 (263)
T PRK07814 26 IALAFAEAGADVLIAART--ESQLDEVAEQIRAAGRRAHVV-AA-DLAH-PEATAGLAGQAVEAF-GRLDIVVNNVGG 97 (263)
T ss_pred HHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEE-Ec-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 345566679999988753 122222222222222122222 21 2333 233344556777777 579999999875
No 163
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=38.05 E-value=1.6e+02 Score=24.77 Aligned_cols=75 Identities=24% Similarity=0.218 Sum_probs=46.5
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC-ccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK-VDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~-~d~iv~~~G~G 87 (225)
-.+++|+.|+.++.+-.+ ++ -++.++++ |..++..| ++..+-.|+..=..++ +|+++=++|.
T Consensus 163 l~Ql~ra~~a~tI~~asT---ae----K~~~aken-G~~h~I~y--------~~eD~v~~V~kiTngKGVd~vyDsvG~- 225 (336)
T KOG1197|consen 163 LCQLLRAVGAHTIATAST---AE----KHEIAKEN-GAEHPIDY--------STEDYVDEVKKITNGKGVDAVYDSVGK- 225 (336)
T ss_pred HHHHHHhcCcEEEEEecc---HH----HHHHHHhc-CCcceeec--------cchhHHHHHHhccCCCCceeeeccccc-
Confidence 357889999999988743 12 24456776 65444322 2344445665555344 9999999976
Q ss_pred hhHHHHHHHHHhh
Q 027277 88 GTVTGAGRFLKEK 100 (225)
Q Consensus 88 g~~aGi~~~~k~~ 100 (225)
.|+++-...+|..
T Consensus 226 dt~~~sl~~Lk~~ 238 (336)
T KOG1197|consen 226 DTFAKSLAALKPM 238 (336)
T ss_pred hhhHHHHHHhccC
Confidence 5555555566643
No 164
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=37.92 E-value=91 Score=26.28 Aligned_cols=47 Identities=15% Similarity=-0.042 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhcCCCC--CCEEEEEecCCCCCCcChhhchhHHHhcCCCCCC
Q 027277 176 AAAAAAIRVAKRPENA--GKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225 (225)
Q Consensus 176 aalaa~~~~~~~~~~~--~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~~~ 225 (225)
..+.++.++.++...+ .=.++++.|+.++-..+ +...+.++.||..|
T Consensus 86 v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPS---LsamIvnr~~mr~d 134 (290)
T PF08392_consen 86 VIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPS---LSAMIVNRYGMRSD 134 (290)
T ss_pred HHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCc---HHHHHHHHhCCCcC
Confidence 4455566666554322 33567777677765554 77888888888765
No 165
>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
Probab=37.88 E-value=2.6e+02 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=23.1
Q ss_pred EeCHHHHHHHHHHHHHhcCCeecch
Q 027277 149 TVSSEEAIETSKLLALKEGLLVGIS 173 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~eGi~~eps 173 (225)
.++++++.+.+-+|.+..|-++||.
T Consensus 706 nIpeeeAvd~LIeLIKe~G~Wvdp~ 730 (733)
T PLN02925 706 GIAMEEATDALIQLIKDHGRWVDPE 730 (733)
T ss_pred CCCHHHHHHHHHHHHHHcCcccCCC
Confidence 5899999999999999999999993
No 166
>PRK05854 short chain dehydrogenase; Provisional
Probab=37.62 E-value=2.1e+02 Score=23.86 Aligned_cols=72 Identities=17% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC--eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN--GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.+. .+...+...++.++.++ ..++ +. |-.. ..-...++.++.+.. +.+|.+|..+|..
T Consensus 31 a~~La~~G~~Vil~~R~--~~~~~~~~~~l~~~~~~~~v~~~-~~-Dl~d-~~sv~~~~~~~~~~~-~~iD~li~nAG~~ 104 (313)
T PRK05854 31 ARRLAAAGAEVILPVRN--RAKGEAAVAAIRTAVPDAKLSLR-AL-DLSS-LASVAALGEQLRAEG-RPIHLLINNAGVM 104 (313)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCCCceEEE-Ee-cCCC-HHHHHHHHHHHHHhC-CCccEEEECCccc
Confidence 34455679999988753 23333334444443322 2222 22 2222 334455566666655 5799999998854
No 167
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=37.54 E-value=2.4e+02 Score=23.47 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=24.5
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigV 109 (225)
+||+|++. +.++..+++.+.+++.+.+++++..
T Consensus 188 ~pdaV~~~-~~~~~a~~~~~~~~~~G~~~~~~~~ 220 (341)
T cd06341 188 GADAIITV-LDAAVCASVLKAVRAAGLTPKVVLS 220 (341)
T ss_pred CCCEEEEe-cChHHHHHHHHHHHHcCCCCCEEEe
Confidence 59998876 4555778999999998776665544
No 168
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=37.47 E-value=1.7e+02 Score=26.82 Aligned_cols=84 Identities=23% Similarity=0.218 Sum_probs=49.8
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHH------HHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEE
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVK------KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIA 82 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~ 82 (225)
-.+.++.+|++|+.+++....+...+ ...++.++- +...++--.++. -...+..|.++++ +++++++
T Consensus 155 vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~a-DiV~l~lP~t~~----t~~li~~~~l~~m--k~ga~lI 227 (526)
T PRK13581 155 VAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARA-DFITLHTPLTPE----TRGLIGAEELAKM--KPGVRII 227 (526)
T ss_pred HHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhC-CEEEEccCCChH----hhcCcCHHHHhcC--CCCeEEE
Confidence 34667899999999886322111110 123444444 555544222222 2344456888888 4789999
Q ss_pred ecCcchhH--HHHHHHHHh
Q 027277 83 GIGTGGTV--TGAGRFLKE 99 (225)
Q Consensus 83 ~~G~Gg~~--aGi~~~~k~ 99 (225)
-+|.|+++ ..+..+++.
T Consensus 228 N~aRG~~vde~aL~~aL~~ 246 (526)
T PRK13581 228 NCARGGIIDEAALAEALKS 246 (526)
T ss_pred ECCCCceeCHHHHHHHHhc
Confidence 99999987 455556553
No 169
>PRK09242 tropinone reductase; Provisional
Probab=37.38 E-value=2.1e+02 Score=22.72 Aligned_cols=73 Identities=10% Similarity=0.093 Sum_probs=38.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-CeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP-NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
...+...|++|+.+... .+...+...++....+ ......+. |-.. ..-...+..++.+++ +.+|+||...|.+
T Consensus 26 a~~l~~~G~~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-g~id~li~~ag~~ 99 (257)
T PRK09242 26 AREFLGLGADVLIVARD--ADALAQARDELAEEFPEREVHGLAA-DVSD-DEDRRAILDWVEDHW-DGLHILVNNAGGN 99 (257)
T ss_pred HHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhhCCCCeEEEEEC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 44455679999988753 2333333344433321 22222222 2223 233344445666666 5799999999863
No 170
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=37.31 E-value=2.1e+02 Score=22.68 Aligned_cols=72 Identities=21% Similarity=0.178 Sum_probs=39.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
...+...|++|+.++.. .+...+...++.... ......+. |-.. ......+..++.++. +.+|.+|...|..
T Consensus 26 a~~L~~~G~~vvl~~r~--~~~~~~~~~~l~~~~-~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 97 (254)
T PRK08085 26 ATGLAEYGAEIIINDIT--AERAELAVAKLRQEG-IKAHAAPF-NVTH-KQEVEAAIEHIEKDI-GPIDVLINNAGIQ 97 (254)
T ss_pred HHHHHHcCCEEEEEcCC--HHHHHHHHHHHHhcC-CeEEEEec-CCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCcC
Confidence 44455679999988753 222223333333322 22222233 2333 334445555676776 5799999998853
No 171
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.22 E-value=2e+02 Score=22.48 Aligned_cols=72 Identities=18% Similarity=0.189 Sum_probs=38.4
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.+.. +...+...++. ..+......+. +... ..-......++.+++ +.+|.||..+|..
T Consensus 24 ~~~L~~~G~~Vi~~~r~~--~~~~~~~~~~~-~~~~~~~~~~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 95 (239)
T PRK07666 24 AIALAKEGVNVGLLARTE--ENLKAVAEEVE-AYGVKVVIATA-DVSD-YEEVTAAIEQLKNEL-GSIDILINNAGIS 95 (239)
T ss_pred HHHHHHCCCEEEEEeCCH--HHHHHHHHHHH-HhCCeEEEEEC-CCCC-HHHHHHHHHHHHHHc-CCccEEEEcCccc
Confidence 344566799999887532 22222233332 22222222222 2222 233445556677776 5689999998764
No 172
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=37.21 E-value=2.1e+02 Score=22.68 Aligned_cols=42 Identities=24% Similarity=0.317 Sum_probs=26.2
Q ss_pred HHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEEe
Q 027277 67 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIE 110 (225)
Q Consensus 67 ~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigVe 110 (225)
.+++++-..+||+||++ +.....|+..++++.+. ++.|+|.+
T Consensus 178 ~~~l~~~~~~~~ai~~~--~d~~a~g~~~~l~~~g~~~dv~v~g~d 221 (275)
T cd06317 178 EALITKFGDDIDGVYAG--DDNMARGALNAAKEAGLAGGIVIVGAN 221 (275)
T ss_pred HHHHHhCCCCccEEEEC--CCcHHHHHHHHHHhcCCcCCcEEEEeC
Confidence 45554421357888854 33455688888887764 57777764
No 173
>PRK06701 short chain dehydrogenase; Provisional
Probab=36.95 E-value=2.4e+02 Score=23.22 Aligned_cols=71 Identities=10% Similarity=0.168 Sum_probs=36.8
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
..+...|++|+.+..... +.......++ +..+. ..++ +. |... ......+..++.+++ +.+|.||..+|.+
T Consensus 64 ~~l~~~G~~V~l~~r~~~-~~~~~~~~~~-~~~~~~~~~~-~~-Dl~~-~~~~~~~~~~i~~~~-~~iD~lI~~Ag~~ 135 (290)
T PRK06701 64 VLFAKEGADIAIVYLDEH-EDANETKQRV-EKEGVKCLLI-PG-DVSD-EAFCKDAVEETVREL-GRLDILVNNAAFQ 135 (290)
T ss_pred HHHHHCCCEEEEEeCCcc-hHHHHHHHHH-HhcCCeEEEE-Ec-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCccc
Confidence 344556999888865321 1111222222 22222 2222 22 2333 334455566777777 5799999988754
No 174
>PRK06194 hypothetical protein; Provisional
Probab=36.81 E-value=2.3e+02 Score=22.96 Aligned_cols=72 Identities=18% Similarity=0.207 Sum_probs=38.2
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.++... +...+...++........++ +. |-.. ......+..++.++. +.+|.||..+|..
T Consensus 23 a~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~~-~~-D~~d-~~~~~~~~~~~~~~~-g~id~vi~~Ag~~ 94 (287)
T PRK06194 23 ARIGAALGMKLVLADVQQ--DALDRAVAELRAQGAEVLGV-RT-DVSD-AAQVEALADAALERF-GAVHLLFNNAGVG 94 (287)
T ss_pred HHHHHHCCCEEEEEeCCh--HHHHHHHHHHHhcCCeEEEE-EC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 344556799999887531 22222333332222123223 22 2333 233444555666666 5689999999864
No 175
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=36.79 E-value=72 Score=28.40 Aligned_cols=66 Identities=24% Similarity=0.366 Sum_probs=35.1
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhh----C------CCccEEEEecC-cchhHHHHHH----HHHhhCCCcEE--EEE
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDS----G------GKVDAFIAGIG-TGGTVTGAGR----FLKEKNPNIKV--YGI 109 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql----~------~~~d~iv~~~G-~Gg~~aGi~~----~~k~~~~~~~v--igV 109 (225)
++....+...+|..||.+.|.|+.+++ . +.++.+++-.+ +|||=+|++. .+++.+|+.-+ ++|
T Consensus 89 ~~~~~~gagnnwa~G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V 168 (425)
T cd02187 89 FVFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSV 168 (425)
T ss_pred eeeccCCCCCccCccchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEE
Confidence 444444455566678888777765543 1 13555555443 3445556554 44555665434 345
Q ss_pred eCC
Q 027277 110 EPS 112 (225)
Q Consensus 110 e~~ 112 (225)
-|.
T Consensus 169 ~P~ 171 (425)
T cd02187 169 FPS 171 (425)
T ss_pred ecC
Confidence 553
No 176
>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.61 E-value=1.1e+02 Score=24.36 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=21.4
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
+|++|||. +..+..|+..++++.+ .++.|+|++
T Consensus 172 ~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d 208 (263)
T cd06280 172 RPEALVAS--NGLLLLGALRAVRAAGLRIPQDLALAGFD 208 (263)
T ss_pred CCcEEEEC--CcHHHHHHHHHHHHcCCCCCCcEEEEEeC
Confidence 47777763 4456668888887764 345676664
No 177
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=36.32 E-value=82 Score=28.13 Aligned_cols=60 Identities=23% Similarity=0.196 Sum_probs=33.3
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhh----C------CCccEEEEecC-cchhHHHHHHHH----HhhCCCcEE
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDS----G------GKVDAFIAGIG-TGGTVTGAGRFL----KEKNPNIKV 106 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql----~------~~~d~iv~~~G-~Gg~~aGi~~~~----k~~~~~~~v 106 (225)
.+..+.+...+|..||.+.|.|+.++. . +.++.+++-.+ +|||=+|++..+ ++.+|+..+
T Consensus 91 ~~~~~~g~gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~ 165 (434)
T cd02186 91 LISGKEDAANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSK 165 (434)
T ss_pred eeecCCCCCcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCcchhHHHHHHHHHHHhcCccce
Confidence 333444455667779988888776553 1 23555555443 345556666544 445664333
No 178
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=36.05 E-value=1.8e+02 Score=26.68 Aligned_cols=85 Identities=21% Similarity=0.200 Sum_probs=50.4
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHH-------HHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 8 ERRIILRALGAEVYLADPAVGFEGFV-------KKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
.-.+.++.+|++|+.+++....+.+. ....++.++- +...++--.++.+ ...+..+.++++ +++++
T Consensus 152 ~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~a-DvV~l~lPlt~~T----~~li~~~~l~~m--k~ga~ 224 (525)
T TIGR01327 152 IVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARA-DFITVHTPLTPET----RGLIGAEELAKM--KKGVI 224 (525)
T ss_pred HHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhC-CEEEEccCCChhh----ccCcCHHHHhcC--CCCeE
Confidence 34566789999999988632111111 1134444443 5555443223322 334456778888 47899
Q ss_pred EEecCcchhH--HHHHHHHHh
Q 027277 81 IAGIGTGGTV--TGAGRFLKE 99 (225)
Q Consensus 81 v~~~G~Gg~~--aGi~~~~k~ 99 (225)
++-++.|+.+ ..+..+++.
T Consensus 225 lIN~aRG~~vde~aL~~aL~~ 245 (525)
T TIGR01327 225 IVNCARGGIIDEAALYEALEE 245 (525)
T ss_pred EEEcCCCceeCHHHHHHHHHc
Confidence 9999999987 555566654
No 179
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.94 E-value=87 Score=25.56 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=19.5
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigVe 110 (225)
+||+||++- .....|+..++++.+. ++.|+|..
T Consensus 186 ~~~ai~~~~--d~~a~g~~~~l~~~g~~di~vvg~d 219 (294)
T cd06316 186 DLKGIYAVW--DVPAEGVIAALRAAGRDDIKVTTVD 219 (294)
T ss_pred CeeEEEeCC--CchhHHHHHHHHHcCCCCceEEEeC
Confidence 466766652 2345577777776653 55666653
No 180
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=35.82 E-value=1.8e+02 Score=21.52 Aligned_cols=36 Identities=11% Similarity=0.056 Sum_probs=22.9
Q ss_pred CccEEEEecCcchh------------HHHHHHHHHhhCCCcEEEEEeC
Q 027277 76 KVDAFIAGIGTGGT------------VTGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~------------~aGi~~~~k~~~~~~~vigVe~ 111 (225)
+||.|++.+|+=-. +..+...++...|+++|+.+.+
T Consensus 50 ~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~ 97 (171)
T cd04502 50 QPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIISI 97 (171)
T ss_pred CCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEe
Confidence 69999999986221 2233333444567788888764
No 181
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=35.77 E-value=88 Score=26.77 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=27.6
Q ss_pred CCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH
Q 027277 2 PSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEIL 40 (225)
Q Consensus 2 P~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~ 40 (225)
|...|+.--..++.+|..|...++.+.++-+...+..+-
T Consensus 85 p~AVs~~yE~~Lks~GitV~RigG~nR~ETa~~v~~~~~ 123 (337)
T COG2247 85 PIAVSPNYENALKSLGITVKRIGGANRYETAEKVAKFFR 123 (337)
T ss_pred CCcCChhHHHHHHhCCcEEEEecCcchHHHHHHHHHHHH
Confidence 556777788889999999999998655544444444443
No 182
>PRK07832 short chain dehydrogenase; Provisional
Probab=35.76 E-value=2.3e+02 Score=22.78 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=37.6
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+..+. +...+...++...........+ .|... ..-...+..++.++. +.+|.+|...|.+
T Consensus 17 a~~la~~G~~vv~~~r~~--~~~~~~~~~~~~~~~~~~~~~~-~D~~~-~~~~~~~~~~~~~~~-~~id~lv~~ag~~ 89 (272)
T PRK07832 17 ALRLAAQGAELFLTDRDA--DGLAQTVADARALGGTVPEHRA-LDISD-YDAVAAFAADIHAAH-GSMDVVMNIAGIS 89 (272)
T ss_pred HHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCCcceEEE-eeCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCCC
Confidence 344566799999887532 2222222333222211111111 12222 333444556777776 5699999999864
No 183
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=35.70 E-value=2.7e+02 Score=24.16 Aligned_cols=89 Identities=10% Similarity=-0.065 Sum_probs=42.3
Q ss_pred cCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhh---HHHHHHhhCCCccEEEEecCcchhH--
Q 027277 16 LGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETT---GPEIWNDSGGKVDAFIAGIGTGGTV-- 90 (225)
Q Consensus 16 ~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~---~~Ei~~Ql~~~~d~iv~~~G~Gg~~-- 90 (225)
.++-++..++.+ +.-...++....+..++............|...+ -.|+.+.. +|+.|++-.+....+
T Consensus 18 ~~aVpIlHGPsG----Ca~~~~r~l~~~~~~v~sT~L~E~DvVFGGeeKL~eaI~ea~e~y--~P~lI~VvTTCvseIIG 91 (352)
T TIGR03282 18 EVDVIILHGPSG----CCFRTARLLEEDGVRVFTTGMDENDFVFGASEKLVKVIRYAEEKF--KPELIGVVGTCASMIIG 91 (352)
T ss_pred CCCEEEEECchh----hhhhhhhhccCCCCceeccCCCCCceEeCcHHHHHHHHHHHHHhc--CCCEEEEECCCchhhcc
Confidence 455667777643 2211122222222234444444444423444333 23344444 478777766543333
Q ss_pred ---HHHHHHHHhhCCCcEEEEEeCCC
Q 027277 91 ---TGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 91 ---aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
-++.+ +.....+||.|+..+
T Consensus 92 DDIeaVvk---E~~~giPVI~V~t~G 114 (352)
T TIGR03282 92 EDLKEAVD---EADVDAEVIAVEVHA 114 (352)
T ss_pred CCHHHHHH---HhCCCCCEEEEECCC
Confidence 34443 334567899997633
No 184
>PRK11041 DNA-binding transcriptional regulator CytR; Provisional
Probab=35.65 E-value=1.1e+02 Score=25.11 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=24.0
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEeC
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEP 111 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe~ 111 (225)
.||+||++ +.....|+..++++.+- ++.|+|++-
T Consensus 213 ~~~ai~~~--~d~~a~gv~~al~~~g~~ip~di~vvg~D~ 250 (309)
T PRK11041 213 PPTAVFCH--SDVMALGALSQAKRMGLRVPQDLSIIGFDD 250 (309)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 48998875 44556699999988753 466777653
No 185
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=35.61 E-value=1.7e+02 Score=21.12 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=26.3
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
.||+||| .+..+..|+..++++.+ .++.|++..
T Consensus 68 ~pdaii~--~~~~~a~~~~~~l~~~g~~vP~di~vv~~~ 104 (160)
T PF13377_consen 68 RPDAIIC--SNDRLALGVLRALRELGIRVPQDISVVSFD 104 (160)
T ss_dssp SSSEEEE--SSHHHHHHHHHHHHHTTSCTTTTSEEEEES
T ss_pred CCcEEEE--cCHHHHHHHHHHHHHcCCcccccccEEEec
Confidence 6899998 46778999999999875 357788774
No 186
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=35.48 E-value=81 Score=27.54 Aligned_cols=67 Identities=28% Similarity=0.433 Sum_probs=32.4
Q ss_pred eEEeCCCCCCCChHhhHhhhHHHHHHhhC-------C---CccEEEEecC-cchhHHHHHHH----HHhhCCCcEE--EE
Q 027277 46 GYILGQFENPANPEIHYETTGPEIWNDSG-------G---KVDAFIAGIG-TGGTVTGAGRF----LKEKNPNIKV--YG 108 (225)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-------~---~~d~iv~~~G-~Gg~~aGi~~~----~k~~~~~~~v--ig 108 (225)
..+..+.+...+|..||.+.+.|..++.. + .++.+++-.+ +|||-+|++.. +++.+|+..+ ++
T Consensus 48 ~~~~~~~g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~ 127 (382)
T cd06059 48 QLVNGKEGSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFS 127 (382)
T ss_pred cEEeccccccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEE
Confidence 34444444555666788776655544431 1 2443344433 23344555544 4555555433 34
Q ss_pred EeCC
Q 027277 109 IEPS 112 (225)
Q Consensus 109 Ve~~ 112 (225)
|-|.
T Consensus 128 v~P~ 131 (382)
T cd06059 128 IFPS 131 (382)
T ss_pred Eecc
Confidence 4443
No 187
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=35.41 E-value=1.1e+02 Score=24.43 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=20.2
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEEeC
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIEP 111 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigVe~ 111 (225)
+||+||+.. +.+..|+..++++.+. ++.|+|+..
T Consensus 183 ~~~aI~~~~--d~~a~g~~~al~~~g~~~di~vvg~d~ 218 (271)
T cd06312 183 DVDAVLTLG--APSAAPAAKALKQAGLKGKVKLGGFDL 218 (271)
T ss_pred CccEEEEeC--CccchHHHHHHHhcCCCCCeEEEEecC
Confidence 467766664 3345577777776543 466666643
No 188
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=35.23 E-value=2.2e+02 Score=22.46 Aligned_cols=32 Identities=25% Similarity=0.307 Sum_probs=22.7
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
||+||++ +..+..|+..++++.+. ++.|++.+
T Consensus 175 ~~ai~~~--~d~~a~g~~~~~~~~g~~ip~~i~ii~~d 210 (264)
T cd01574 175 PTAVFAA--NDQMALGVLRALHELGLRVPDDVSVVGFD 210 (264)
T ss_pred CcEEEEc--CcHHHHHHHHHHHHcCCCCccceEEeccc
Confidence 8888876 44566788888887652 46677764
No 189
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=35.21 E-value=3e+02 Score=23.84 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=42.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchh
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 89 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~ 89 (225)
++..+++||+|+.++.+ ++..+.++++.. -++++.- ++.. .+.+...+|.|+..++ .-+
T Consensus 183 vQ~Aka~ga~Via~~~~---~~K~e~a~~lGA----d~~i~~~-~~~~------------~~~~~~~~d~ii~tv~-~~~ 241 (339)
T COG1064 183 VQYAKAMGAEVIAITRS---EEKLELAKKLGA----DHVINSS-DSDA------------LEAVKEIADAIIDTVG-PAT 241 (339)
T ss_pred HHHHHHcCCeEEEEeCC---hHHHHHHHHhCC----cEEEEcC-Cchh------------hHHhHhhCcEEEECCC-hhh
Confidence 56778899999999864 244455555432 2444432 2222 1111112799999998 666
Q ss_pred HHHHHHHHHhhCCCcEEEEE
Q 027277 90 VTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 90 ~aGi~~~~k~~~~~~~vigV 109 (225)
+- .+++.+.+.-+++.|
T Consensus 242 ~~---~~l~~l~~~G~~v~v 258 (339)
T COG1064 242 LE---PSLKALRRGGTLVLV 258 (339)
T ss_pred HH---HHHHHHhcCCEEEEE
Confidence 54 455555555455444
No 190
>PRK05876 short chain dehydrogenase; Provisional
Probab=35.18 E-value=2.5e+02 Score=22.88 Aligned_cols=72 Identities=15% Similarity=0.088 Sum_probs=39.4
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
-...+...|++|+.++.. .+...+...++.... ......+. |-.. ......+..++.+++ +++|.+|..+|.
T Consensus 22 la~~La~~G~~Vv~~~r~--~~~l~~~~~~l~~~~-~~~~~~~~-Dv~d-~~~v~~~~~~~~~~~-g~id~li~nAg~ 93 (275)
T PRK05876 22 TGTEFARRGARVVLGDVD--KPGLRQAVNHLRAEG-FDVHGVMC-DVRH-REEVTHLADEAFRLL-GHVDVVFSNAGI 93 (275)
T ss_pred HHHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcC-CeEEEEeC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCc
Confidence 345566779999988742 222223333333222 22222222 2333 334455566777777 579999999885
No 191
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=35.06 E-value=1.7e+02 Score=23.95 Aligned_cols=82 Identities=12% Similarity=0.056 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCC--CeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEE
Q 027277 31 GFVKKGEEILNRTP--NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 108 (225)
Q Consensus 31 ~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vig 108 (225)
...+..+++.++.+ ..+.++...+.......-+..+.+.++++- +.+. ++.+|.|.|+.-+...+.. .+...+..
T Consensus 5 ~~~~Le~~L~~~fgLk~~~Vv~~~~~~~~~~~~l~~~aA~~L~~~l-~~~~-~iGv~wG~Tl~~~~~~l~~-~~~~~~~v 81 (255)
T PF04198_consen 5 RNSELEEELKEKFGLKEVIVVPSPSDDEDILESLGEAAAEYLSELL-KDGD-VIGVGWGRTLYAVANHLPP-KSLPNVTV 81 (255)
T ss_dssp HHHHHHHHHHHHHTSSEEEEESSSTTTHHHHHHHHHHHHHHHHHH---TTE-EEEE-TSHHHHHHHHTS---SSSSCEEE
T ss_pred CHHHHHHHHHHHhCCCEEEEecCCCChHHHHHHHHHHHHHHHHHhC-CCCC-EEEEcchHHHHHHHHhcCc-cCCCCcEE
Confidence 44455555555542 244454433322223333444455555542 2223 7788888888887777765 33344555
Q ss_pred EeCCCCc
Q 027277 109 IEPSESA 115 (225)
Q Consensus 109 Ve~~~~~ 115 (225)
|+-.|+.
T Consensus 82 V~l~Gg~ 88 (255)
T PF04198_consen 82 VPLIGGV 88 (255)
T ss_dssp EESBSBT
T ss_pred EECCCCC
Confidence 6555543
No 192
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=35.02 E-value=1.4e+02 Score=27.15 Aligned_cols=102 Identities=19% Similarity=0.262 Sum_probs=61.6
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEe--------CCCCCCCChHhhHhhhHHHHHHhhCCCccEEEE
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYIL--------GQFENPANPEIHYETTGPEIWNDSGGKVDAFIA 82 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~ 82 (225)
.+++.----++++++.--|.++.+..+.+++.+ +...+ -+.++|.| ..|.+.+|..-..-+..+-| +|+
T Consensus 224 ~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~-~iPv~ETQaGKsal~~dhplN-lG~vGvTGt~AAN~~A~~AD-lVi 300 (617)
T COG3962 224 ALIKSAKKPLIVAGGGVLYSGAREALRAFAETH-GIPVVETQAGKSALAWDHPLN-LGGVGVTGTLAANRAAEEAD-LVI 300 (617)
T ss_pred HHHHhcCCCEEEecCceeechHHHHHHHHHHhc-CCceEeccCCcccccccCccc-cccccccchHHHHhhhhhcC-EEE
Confidence 344544445788876556788888888888776 32222 23466777 67776666555444433445 456
Q ss_pred ecCc--chhHHHHHHHHHhhCCCcEEEEEeCCCCccc
Q 027277 83 GIGT--GGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117 (225)
Q Consensus 83 ~~G~--Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~ 117 (225)
.+|+ --..+|-...|+ +|.++++.+.+......
T Consensus 301 giGTR~~DFTTgS~alF~--~~~~k~l~lNV~~~da~ 335 (617)
T COG3962 301 GIGTRLQDFTTGSKALFK--NPGVKFLNLNVQPFDAY 335 (617)
T ss_pred EecccccccccccHHHhc--CCCceEEEeeccccccc
Confidence 6665 122344444454 57889999887766544
No 193
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=34.58 E-value=1.6e+02 Score=23.14 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=21.9
Q ss_pred eecchHHHHHHHHHHHhh-cCCCCCCEEEEEecCCCC
Q 027277 169 LVGISSGAAAAAAIRVAK-RPENAGKLIVVIFPSAGE 204 (225)
Q Consensus 169 ~~epssgaalaa~~~~~~-~~~~~~~~vv~v~~~gG~ 204 (225)
+.++.++-++.-+++..+ +. ...+++|+++++|-|
T Consensus 88 ~ag~~TadAi~~av~rl~~~~-~a~~kvvILLTDG~n 123 (191)
T cd01455 88 WSGDHTVEATEFAIKELAAKE-DFDEAIVIVLSDANL 123 (191)
T ss_pred ccCccHHHHHHHHHHHHHhcC-cCCCcEEEEEeCCCc
Confidence 356666666666666554 33 345789999955543
No 194
>PLN02565 cysteine synthase
Probab=34.56 E-value=2.9e+02 Score=23.48 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=21.4
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
|+...+|.+-.+++.+-+.++ .+++.+-|...+
T Consensus 70 vv~aSsGN~g~alA~~a~~~G--~~~~ivvp~~~~ 102 (322)
T PLN02565 70 LIEPTSGNTGIGLAFMAAAKG--YKLIITMPASMS 102 (322)
T ss_pred EEEECCChHHHHHHHHHHHcC--CeEEEEeCCCCc
Confidence 455566666667766666544 677777787765
No 195
>PRK13794 hypothetical protein; Provisional
Probab=34.53 E-value=1.2e+02 Score=27.58 Aligned_cols=74 Identities=19% Similarity=0.118 Sum_probs=47.9
Q ss_pred EeCHHHHHHHHHHHHHhc--CCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCCC
Q 027277 149 TVSSEEAIETSKLLALKE--GLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPI 224 (225)
Q Consensus 149 ~v~d~e~~~a~~~l~~~e--Gi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~~ 224 (225)
..-+.++.+.++..++.. .+.+.-|+|+=-.+++.++.+. . +.++.+++.+.|.-+.+++-|-+...++.|+++
T Consensus 229 ~~~~~~a~~~i~~~~~~~~~~v~vs~SGGKDS~v~L~L~~~~-~-~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~i 304 (479)
T PRK13794 229 DKYERNSIGFIRNTAEKINKPVTVAYSGGKDSLATLLLALKA-L-GINFPVLFNDTGLEFPETLENVEDVEKHYGLEI 304 (479)
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEecchHHHHHHHHHHHHH-h-CCCeEEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence 334566777777776533 4677778888877777776442 1 233444555788777777666777777777753
No 196
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=34.27 E-value=3.7e+02 Score=24.69 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=29.6
Q ss_pred HHHHhhC-CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEE
Q 027277 68 EIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGI 109 (225)
Q Consensus 68 Ei~~Ql~-~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigV 109 (225)
|++++.+ .+.|.+++.++.-..-.-+....++.+++.+|++-
T Consensus 472 ~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 472 EIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred HHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEE
Confidence 5566654 35889999988755544456667777888888875
No 197
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=34.24 E-value=1.9e+02 Score=22.17 Aligned_cols=83 Identities=16% Similarity=0.147 Sum_probs=46.7
Q ss_pred ccCcCeEEEeCHHHHHHHHHHHHHhcCC---------eecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhh
Q 027277 141 VAMLDEVITVSSEEAIETSKLLALKEGL---------LVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTAL 211 (225)
Q Consensus 141 ~~~~~~~~~v~d~e~~~a~~~l~~~eGi---------~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~ 211 (225)
+..++..+..+++.-..+-..+++..|+ +.+..+=..+--+.+.+.+...-| +.|-|+|-.|.--..+ +
T Consensus 49 ke~v~gvv~~ne~yE~~a~s~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLG-ktvYVHCKAGRtRSaT-v 126 (183)
T KOG1719|consen 49 KENVGGVVTLNEPYELLAPSNLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLG-KTVYVHCKAGRTRSAT-V 126 (183)
T ss_pred hcCCCeEEEeCCchhhhhhhHHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccC-CeEEEEecCCCccchh-h
Confidence 3445566666666555555556777776 222222233333344454443334 4667776666543333 6
Q ss_pred chhHHHhcCCCCCC
Q 027277 212 FESIRHEVENMPID 225 (225)
Q Consensus 212 ~~~~~~~~~~~~~~ 225 (225)
-..+.++++|.+|+
T Consensus 127 V~cYLmq~~~wtpe 140 (183)
T KOG1719|consen 127 VACYLMQHKNWTPE 140 (183)
T ss_pred hhhhhhhhcCCCHH
Confidence 67788999988874
No 198
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=34.10 E-value=71 Score=27.95 Aligned_cols=62 Identities=16% Similarity=0.282 Sum_probs=31.2
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhh----C------CCccEEEEecC-cchhHHHHHHHH----HhhCCCcEEEE
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDS----G------GKVDAFIAGIG-TGGTVTGAGRFL----KEKNPNIKVYG 108 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql----~------~~~d~iv~~~G-~Gg~~aGi~~~~----k~~~~~~~vig 108 (225)
++....+...+|..||.+.|.|+.+++ . +.++.+++-.+ +|||=+|++..+ ++.+|+..++.
T Consensus 59 ~~~~~~gaGnn~a~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~ 135 (379)
T cd02190 59 LVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFV 135 (379)
T ss_pred ccccCCCCCCCccceeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEE
Confidence 333444445566678887666654432 1 12444444433 344555655544 55566544443
No 199
>TIGR00273 iron-sulfur cluster-binding protein. Members of this family have a perfect 4Fe-4S binding motif C-x(2)-C-x(2)-C-x(3)-CP followed by either a perfect or imperfect (the first Cys replaced by Ser) second copy. Members probably bind two 4fe-4S iron-sulfur clusters.
Probab=34.08 E-value=1.7e+02 Score=26.20 Aligned_cols=70 Identities=16% Similarity=0.085 Sum_probs=42.3
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChH---------hhHh----hhHHHHHHhhC-CC
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPE---------IHYE----TTGPEIWNDSG-GK 76 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---------~g~~----t~~~Ei~~Ql~-~~ 76 (225)
+.++..|++|+++.. .+++.+...++.++++....+-.- ++..-. .|+. .++ |..-|+. .+
T Consensus 58 ~~~~~~g~~v~~a~t---~~eA~~~v~~i~~~~~~~~vv~~k-S~~~eeigl~~~L~~~g~~~~etdlg-e~i~ql~~~~ 132 (432)
T TIGR00273 58 ENVTQRGGHVYYAKT---AEEARKIIGKVAQEKNGKKVVKSK-SMVSEEIGLNEVLEKIGIEVWETDLG-ELILQLDGDP 132 (432)
T ss_pred HHHHHCCCEEEEECC---HHHHHHHHHHHHHHhCCCEEEEcC-chHHHHhCCHHHHHhCCCeeeeCccH-HHHhhhccCC
Confidence 456888999999983 478889999998886443333221 111100 0111 223 4445664 45
Q ss_pred ccEEEEecC
Q 027277 77 VDAFIAGIG 85 (225)
Q Consensus 77 ~d~iv~~~G 85 (225)
|.|||.|+=
T Consensus 133 pshiv~Pai 141 (432)
T TIGR00273 133 PSHIVVPAL 141 (432)
T ss_pred Cceeeeccc
Confidence 999999964
No 200
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=33.88 E-value=1e+02 Score=24.40 Aligned_cols=33 Identities=27% Similarity=0.258 Sum_probs=21.6
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEE
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGI 109 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigV 109 (225)
+.||+||++ +..+..|+.+++++.+. ++.|+|+
T Consensus 175 ~~~~ai~~~--~~~~a~g~~~al~~~g~~~p~~v~v~g~ 211 (267)
T cd06284 175 DRPTAIFCF--SDEMAIGAISALKELGLRVPEDISVVGF 211 (267)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCccceeEEEe
Confidence 357888876 44455688888887653 3456655
No 201
>PRK13018 cell division protein FtsZ; Provisional
Probab=33.85 E-value=1.4e+02 Score=26.25 Aligned_cols=45 Identities=29% Similarity=0.282 Sum_probs=24.7
Q ss_pred HHHHhhCCCccEEEEecC-cchhHHHHHHHH----HhhCCCcEEEEEeCCC
Q 027277 68 EIWNDSGGKVDAFIAGIG-TGGTVTGAGRFL----KEKNPNIKVYGIEPSE 113 (225)
Q Consensus 68 Ei~~Ql~~~~d~iv~~~G-~Gg~~aGi~~~~----k~~~~~~~vigVe~~~ 113 (225)
||.+++ ...|.||+.+| +|||=+|++--+ ++.+..+--+.+.|..
T Consensus 105 ~I~~~l-e~~D~vfI~aGLGGGTGSGaapvIa~iake~g~ltv~vVt~Pf~ 154 (378)
T PRK13018 105 EIKEVL-KGADLVFVTAGMGGGTGTGAAPVVAEIAKEQGALVVGVVTKPFK 154 (378)
T ss_pred HHHHHh-cCCCEEEEEeeccCcchhhHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence 344445 45788888887 455666665533 4444333334455544
No 202
>PRK09526 lacI lac repressor; Reviewed
Probab=33.84 E-value=2.2e+02 Score=23.68 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=22.8
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||. +..+..|+..++++.+. ++.|+|.+
T Consensus 240 ~~~ai~~~--~d~~A~g~~~al~~~g~~vP~disvig~d 276 (342)
T PRK09526 240 VPSAILVA--NDQMALGVLRALHESGLRVPGQISVIGYD 276 (342)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 57888865 44556688888887653 46777764
No 203
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=33.68 E-value=1.1e+02 Score=24.41 Aligned_cols=41 Identities=15% Similarity=-0.025 Sum_probs=23.5
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCC
Q 027277 7 IERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFEN 54 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 54 (225)
++-.++....||+.++.++-. .+ ..+.+..+ +..+++...+
T Consensus 75 ~~q~~~a~~aGa~fiVsP~~~--~e----v~~~a~~~-~ip~~PG~~T 115 (211)
T COG0800 75 PEQARQAIAAGAQFIVSPGLN--PE----VAKAANRY-GIPYIPGVAT 115 (211)
T ss_pred HHHHHHHHHcCCCEEECCCCC--HH----HHHHHHhC-CCcccCCCCC
Confidence 455666777888888887532 22 33344454 5566654433
No 204
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=33.45 E-value=2.4e+02 Score=22.29 Aligned_cols=72 Identities=17% Similarity=0.196 Sum_probs=38.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.+.. +...+...++.+......++ +. |... ......+..++.+++ +++|.+|..+|..
T Consensus 28 a~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~-~~-Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 99 (256)
T PRK06124 28 ARALAGAGAHVLVNGRNA--ATLEAAVAALRAAGGAAEAL-AF-DIAD-EEAVAAAFARIDAEH-GRLDILVNNVGAR 99 (256)
T ss_pred HHHHHHcCCeEEEEeCCH--HHHHHHHHHHHhcCCceEEE-Ec-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCCC
Confidence 344556799999987532 22222333332222122222 22 2223 333444556777777 4799999998864
No 205
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.39 E-value=1.2e+02 Score=24.17 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=23.0
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
+||+|||+ +..+..|+..++++.+. ++.|+|.+
T Consensus 176 ~~~aii~~--~~~~a~~~~~~l~~~g~~ip~di~vi~~d 212 (265)
T cd06290 176 DFTAIFAA--NDQTAYGARLALYRRGLRVPEDVSLIGFD 212 (265)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEeeec
Confidence 47888865 55667788888887652 46677765
No 206
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=33.39 E-value=2.3e+02 Score=22.10 Aligned_cols=73 Identities=19% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcch
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 88 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg 88 (225)
...+...|++|+.+.++ .+.......++........++ .. +... .........++.+++ +++|.||..+|...
T Consensus 23 ~~~l~~~g~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~-~~-Dl~~-~~~~~~~~~~~~~~~-~~~d~vi~~ag~~~ 95 (251)
T PRK12826 23 AVRLAADGAEVIVVDIC--GDDAAATAELVEAAGGKARAR-QV-DVRD-RAALKAAVAAGVEDF-GRLDILVANAGIFP 95 (251)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEE-EC-CCCC-HHHHHHHHHHHHHHh-CCCCEEEECCCCCC
Confidence 34455569999888753 222223333333332122222 22 2333 333444556777777 47999999987643
No 207
>PRK07774 short chain dehydrogenase; Provisional
Probab=33.37 E-value=2.4e+02 Score=22.16 Aligned_cols=72 Identities=15% Similarity=0.145 Sum_probs=38.2
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+++.. +...+...++.+......++. . |-.. ......+..++.+++ +.+|.||..+|..
T Consensus 23 a~~l~~~g~~vi~~~r~~--~~~~~~~~~~~~~~~~~~~~~-~-Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 94 (250)
T PRK07774 23 AEALAREGASVVVADINA--EGAERVAKQIVADGGTAIAVQ-V-DVSD-PDSAKAMADATVSAF-GGIDYLVNNAAIY 94 (250)
T ss_pred HHHHHHCCCEEEEEeCCH--HHHHHHHHHHHhcCCcEEEEE-c-CCCC-HHHHHHHHHHHHHHh-CCCCEEEECCCCc
Confidence 344556799999887532 121222222322221222222 1 2223 333455556777777 4799999999853
No 208
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=33.19 E-value=2.5e+02 Score=22.40 Aligned_cols=67 Identities=16% Similarity=0.046 Sum_probs=36.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.++... + ...++.+..+. ..++. . |... .........++.+++ +.+|.+|...|.
T Consensus 22 a~~l~~~G~~V~~~~r~~---~---~~~~l~~~~~~~~~~~~-~-D~~~-~~~~~~~~~~~~~~~-g~id~li~~Ag~ 89 (262)
T TIGR03325 22 VDRFVAEGARVAVLDKSA---A---GLQELEAAHGDAVVGVE-G-DVRS-LDDHKEAVARCVAAF-GKIDCLIPNAGI 89 (262)
T ss_pred HHHHHHCCCEEEEEeCCH---H---HHHHHHhhcCCceEEEE-e-ccCC-HHHHHHHHHHHHHHh-CCCCEEEECCCC
Confidence 345566799999887531 1 12223232222 22221 1 2333 233444556777777 579999999874
No 209
>PRK05650 short chain dehydrogenase; Provisional
Probab=33.13 E-value=2.6e+02 Score=22.47 Aligned_cols=72 Identities=14% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
...+...|++|+.+... .+...+...++........++ +. +-.. ......+..++.++. +.+|.+|..+|..
T Consensus 17 a~~l~~~g~~V~~~~r~--~~~~~~~~~~l~~~~~~~~~~-~~-D~~~-~~~~~~~~~~i~~~~-~~id~lI~~ag~~ 88 (270)
T PRK05650 17 ALRWAREGWRLALADVN--EEGGEETLKLLREAGGDGFYQ-RC-DVRD-YSQLTALAQACEEKW-GGIDVIVNNAGVA 88 (270)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCceEEE-Ec-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 34455679999988753 222222333333332223222 22 2222 233344455666666 5699999998864
No 210
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=32.97 E-value=2.5e+02 Score=22.34 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=17.8
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.+|+|++.- ..+..|+..++++.+. +++|+|.+
T Consensus 185 ~~~aI~~~~--d~~a~g~~~a~~~~g~~ip~di~iig~d 221 (273)
T cd06309 185 DIDAVYAHN--DEMALGAIQAIKAAGKKPGKDIKIVSID 221 (273)
T ss_pred CccEEEECC--cHHHHHHHHHHHHcCCCCCCCeEEEecC
Confidence 466665552 2344466677766543 35566653
No 211
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=32.96 E-value=1e+02 Score=24.53 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=23.7
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.+||+||++ +.....|+..++++.+. ++.|+|.+
T Consensus 177 ~~~~ai~~~--~~~~a~~~~~~l~~~g~~~p~~i~vig~d 214 (268)
T cd06273 177 PRPTAVICG--NDVLALGALYEARRLGLSVPEDLSIVGFD 214 (268)
T ss_pred CCCCEEEEc--ChHHHHHHHHHHHHcCCCCCCceEEEecC
Confidence 358888873 55667788888887652 45677764
No 212
>PTZ00335 tubulin alpha chain; Provisional
Probab=32.87 E-value=73 Score=28.61 Aligned_cols=57 Identities=25% Similarity=0.222 Sum_probs=31.6
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhhC----------CCccEEEEecC-cchhHHHHHHHH----HhhCCC
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDSG----------GKVDAFIAGIG-TGGTVTGAGRFL----KEKNPN 103 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~----------~~~d~iv~~~G-~Gg~~aGi~~~~----k~~~~~ 103 (225)
++....+...+|..||.+.|.|+.+++- +.++.+++-.+ +|||=+|++..+ ++.+|+
T Consensus 92 ~i~~~~gagnnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~ 163 (448)
T PTZ00335 92 LISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGK 163 (448)
T ss_pred eeecCCCCCCcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCccchHHHHHHHHHHHhccc
Confidence 3344444456677799888887765541 23554444433 344656666544 444554
No 213
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.71 E-value=82 Score=23.73 Aligned_cols=39 Identities=18% Similarity=0.253 Sum_probs=25.2
Q ss_pred CccEEEEecCcchhHHH---------HHHHHHhhCCCcEEEEEeCCCC
Q 027277 76 KVDAFIAGIGTGGTVTG---------AGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aG---------i~~~~k~~~~~~~vigVe~~~~ 114 (225)
+||.||+..|+=-...+ +..-++..+|+++|+.+.|-.+
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~~~~~~ 104 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLVSPRYC 104 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEEecCCC
Confidence 69999999997543333 2223344477888888876443
No 214
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=32.48 E-value=1.2e+02 Score=25.39 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=24.7
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
..||+|||. +..+..|+..++++.+ .++.|+|.+
T Consensus 236 ~~~~ai~~~--nd~~A~g~~~al~~~G~~vP~disvigfD 273 (346)
T PRK10401 236 LQLTAVFAY--NDNMAAGALTALKDNGIAIPLHLSIIGFD 273 (346)
T ss_pred CCCcEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 358988876 4556679999998875 356788774
No 215
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=32.47 E-value=2.8e+02 Score=22.65 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=18.9
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEE
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGI 109 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigV 109 (225)
++||+|+|+. .....|+..++++.+. ++.|+|.
T Consensus 184 ~~~~ai~~~~--d~~a~ga~~al~~~g~~~~i~vvg~ 218 (302)
T TIGR02637 184 PNLKGIIAPT--TVGIKAAAQAVSDAKLIGKVKLTGL 218 (302)
T ss_pred CCccEEEeCC--CchHHHHHHHHHhcCCCCCEEEEEc
Confidence 3577777753 2334466677776542 4555555
No 216
>PRK11914 diacylglycerol kinase; Reviewed
Probab=32.14 E-value=2.6e+02 Score=23.36 Aligned_cols=36 Identities=28% Similarity=0.462 Sum_probs=23.7
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
.+|.| +.+|+=||+.-+..++.. .++ -+|+=|.++.
T Consensus 64 ~~d~v-vv~GGDGTi~evv~~l~~--~~~-~lgiiP~GT~ 99 (306)
T PRK11914 64 GTDAL-VVVGGDGVISNALQVLAG--TDI-PLGIIPAGTG 99 (306)
T ss_pred CCCEE-EEECCchHHHHHhHHhcc--CCC-cEEEEeCCCc
Confidence 46754 566777788777777743 333 3788888864
No 217
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=32.14 E-value=2.6e+02 Score=22.24 Aligned_cols=70 Identities=13% Similarity=0.099 Sum_probs=38.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.... ..+...++ ++.+..+...+. |... ......+..++.+++ +++|.+|...|.+
T Consensus 25 a~~l~~~G~~vv~~~~~~----~~~~~~~~-~~~~~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-g~iD~lv~~ag~~ 94 (251)
T PRK12481 25 AIGLAKAGADIVGVGVAE----APETQAQV-EALGRKFHFITA-DLIQ-QKDIDSIVSQAVEVM-GHIDILINNAGII 94 (251)
T ss_pred HHHHHHCCCEEEEecCch----HHHHHHHH-HHcCCeEEEEEe-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCcC
Confidence 345566899998876421 11112222 222222222222 2333 445566666777777 5799999998854
No 218
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=32.11 E-value=1.2e+02 Score=24.04 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=22.9
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEeC
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEP 111 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe~ 111 (225)
.||+|+|. +..+..|+..++++.+. ++.|+|.+.
T Consensus 178 ~~~ai~~~--~d~~A~g~~~al~~~g~~ip~dv~v~g~d~ 215 (264)
T cd06274 178 LPRALFTT--SYTLLEGVLRFLRERPGLAPSDLRIATFDD 215 (264)
T ss_pred CCcEEEEc--ChHHHHHHHHHHHHcCCCCCcceEEEEeCC
Confidence 47888866 45566688888887653 466777653
No 219
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=31.94 E-value=2.7e+02 Score=22.72 Aligned_cols=49 Identities=12% Similarity=0.047 Sum_probs=37.2
Q ss_pred HhhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeC
Q 027277 59 EIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 59 ~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~ 111 (225)
.+|-..+-.++.+.....+|.+|+.+|-=|++-++..++- ++.||||-+
T Consensus 155 VAGiHRLl~~l~r~~~~~~~~lIVvAGMEGaLPsvvagLv----D~PVIavPT 203 (254)
T COG1691 155 VAGIHRLLSALKRLKIEDADVLIVVAGMEGALPSVVAGLV----DVPVIAVPT 203 (254)
T ss_pred cchHHhhhhHHHHHHhhCCCeEEEEcccccchHHHHHhcc----CCCeEeccc
Confidence 5666666666555444569999999999999999998884 577999843
No 220
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=31.83 E-value=2e+02 Score=24.56 Aligned_cols=91 Identities=12% Similarity=0.141 Sum_probs=42.3
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCC-CCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcch
Q 027277 12 ILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQF-ENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGG 88 (225)
Q Consensus 12 ~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~Gg 88 (225)
.++.+|-++.++.+...+....+...+..++.+- ......+ .||. ... ..++.++.. .++| +|+++|||+
T Consensus 17 ~~~~~~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~--~~~----v~~~~~~~~~~~~d-~iiavGGGs 89 (345)
T cd08171 17 VCEKYGKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGEST--YEN----VERLKKNPAVQEAD-MIFAVGGGK 89 (345)
T ss_pred HHHhcCCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCC--HHH----HHHHHHHHhhcCCC-EEEEeCCcH
Confidence 4456787776665322233334444444444321 2211111 2442 121 234444432 2466 467888876
Q ss_pred hHHHHHHHHHhhCCCcEEEEEeC
Q 027277 89 TVTGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 89 ~~aGi~~~~k~~~~~~~vigVe~ 111 (225)
.+ =++++..... ...++.|-+
T Consensus 90 ~~-D~aK~ia~~~-~~p~i~VPT 110 (345)
T cd08171 90 AI-DTVKVLADKL-GKPVFTFPT 110 (345)
T ss_pred HH-HHHHHHHHHc-CCCEEEecC
Confidence 65 4444443332 345777744
No 221
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=31.64 E-value=2.7e+02 Score=22.32 Aligned_cols=70 Identities=14% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+... +...+.+.++.++.+..++ .+. |-.. ......+..++.+++ +++|.+|..+|.
T Consensus 27 a~~la~~G~~v~~~~r~---~~~~~~~~~l~~~~g~~~~-~~~-Dv~~-~~~v~~~~~~~~~~~-g~iDilVnnag~ 96 (260)
T PRK06603 27 AQLAKKHGAELWFTYQS---EVLEKRVKPLAEEIGCNFV-SEL-DVTN-PKSISNLFDDIKEKW-GSFDFLLHGMAF 96 (260)
T ss_pred HHHHHHcCCEEEEEeCc---hHHHHHHHHHHHhcCCceE-EEc-cCCC-HHHHHHHHHHHHHHc-CCccEEEEcccc
Confidence 34555679999887642 2222334555444322222 222 2333 344555566777777 579999988875
No 222
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=31.63 E-value=2.6e+02 Score=22.03 Aligned_cols=71 Identities=15% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+... -+...+...++........++. .+-.. ......+..++.+++ +.+|.+|...|.
T Consensus 17 a~~l~~~G~~v~~~~r~--~~~~~~~~~~l~~~~~~~~~~~--~Dl~~-~~~i~~~~~~~~~~~-~~id~vi~~ag~ 87 (254)
T TIGR02415 17 AERLAKDGFAVAVADLN--EETAKETAKEINQAGGKAVAYK--LDVSD-KDQVFSAIDQAAEKF-GGFDVMVNNAGV 87 (254)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCeEEEEE--cCCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCc
Confidence 44566789999988753 1222223333322221122221 12223 334444556777777 479999999875
No 223
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=31.53 E-value=77 Score=24.10 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=30.2
Q ss_pred EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
+|+.+.|.|-|.+.++.+++......||.-||=-..
T Consensus 6 ~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg 41 (159)
T cd00561 6 QVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKG 41 (159)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCC
Confidence 688899999999999999999888888888764443
No 224
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=31.47 E-value=2.6e+02 Score=22.07 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=16.0
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGI 109 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigV 109 (225)
+|++|++.-. ....|+..++++.+. ++.|+|.
T Consensus 179 ~~~ai~~~~d--~~a~~~~~al~~~g~~di~vvg~ 211 (267)
T cd06322 179 DLDGIFAFGD--DAALGAVSAIKAAGRDNVKVIGF 211 (267)
T ss_pred CCCEEEEcCC--cHHHHHHHHHHHCCCCCeEEEEe
Confidence 4566555422 233455666665543 4555554
No 225
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.41 E-value=1.4e+02 Score=23.49 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=18.8
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||+. ..+..|+..++++.+. ++.|+|++
T Consensus 178 ~~~ai~~~~--d~~a~g~~~~l~~~g~~vp~di~v~g~d 214 (267)
T cd06283 178 KKTAIFAAN--GLILLEVLKALKELGIRIPEDVGLIGFD 214 (267)
T ss_pred CCCEEEEcC--cHHHHHHHHHHHHcCCCCccceEEEEeC
Confidence 367777663 3344577777766542 34555554
No 226
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=31.35 E-value=2.8e+02 Score=22.34 Aligned_cols=71 Identities=23% Similarity=0.187 Sum_probs=37.4
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
...+...|++|+.++.. .+...+...++.. .++.+..-+. |... ......+..++.+++ +.+|.+|..+|.
T Consensus 27 a~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~-~~~~~~~~~~-Dl~~-~~~v~~~~~~~~~~~-g~id~li~~ag~ 97 (278)
T PRK08277 27 AKELARAGAKVAILDRN--QEKAEAVVAEIKA-AGGEALAVKA-DVLD-KESLEQARQQILEDF-GPCDILINGAGG 97 (278)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHh-cCCeEEEEEC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 44555679999888753 2223333333332 2222222222 2323 233444455666666 579999999874
No 227
>PRK06172 short chain dehydrogenase; Provisional
Probab=31.25 E-value=2.6e+02 Score=22.03 Aligned_cols=71 Identities=14% Similarity=0.146 Sum_probs=36.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
...+...|++|+.+..+. +...+...++.+......++ +. +... ..-...+..++.+++ +++|.||...|.
T Consensus 24 a~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~i~~~~~~~~~~~-g~id~li~~ag~ 94 (253)
T PRK06172 24 ALAFAREGAKVVVADRDA--AGGEETVALIREAGGEALFV-AC-DVTR-DAEVKALVEQTIAAY-GRLDYAFNNAGI 94 (253)
T ss_pred HHHHHHcCCEEEEEeCCH--HHHHHHHHHHHhcCCceEEE-Ec-CCCC-HHHHHHHHHHHHHHh-CCCCEEEECCCC
Confidence 344556799999887532 22222233332222122222 21 2222 223344455566666 579999999875
No 228
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=31.22 E-value=2.7e+02 Score=22.09 Aligned_cols=72 Identities=21% Similarity=0.135 Sum_probs=38.4
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC--CeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP--NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
...+...|++|+.++.+ .........++....+ ...++. . |... ..-...+..++.+++ +.+|.||..+|.+
T Consensus 19 a~~l~~~g~~vi~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~-~-D~~~-~~~i~~~~~~~~~~~-~~id~vv~~ag~~ 92 (259)
T PRK12384 19 CHGLAEEGYRVAVADIN--SEKAANVAQEINAEYGEGMAYGFG-A-DATS-EQSVLALSRGVDEIF-GRVDLLVYNAGIA 92 (259)
T ss_pred HHHHHHCCCEEEEEECC--HHHHHHHHHHHHHhcCCceeEEEE-c-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCcC
Confidence 34455679999988753 2222233333333321 122222 2 2233 233344556777777 5799999998754
No 229
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=31.21 E-value=1.7e+02 Score=21.43 Aligned_cols=42 Identities=19% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCC-CCChHHHHHHHHHHHHh
Q 027277 1 MPSTYSIERRIILRALGAEVYLADP-AVGFEGFVKKGEEILNR 42 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~-~~~~~~~~~~a~~~~~~ 42 (225)
||+.+-+.-+...+.+|+-+++-+- .+++.+......++..+
T Consensus 9 MP~~~Lk~l~~~a~~~g~~~VlRG~~~~~~~~T~~~i~~L~~~ 51 (130)
T TIGR02742 9 MPEPLLKQLLDQAEALGAPLVIRGLLDNGFKATATRIQSLIKD 51 (130)
T ss_pred CCHHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHhc
Confidence 4555555555555667776555432 12444555555555444
No 230
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=31.16 E-value=76 Score=21.55 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=22.0
Q ss_pred EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.+-+.+|+|....-+++ ..+..+|+||+.+..
T Consensus 5 vLDlGcG~G~~~~~l~~----~~~~~~v~gvD~s~~ 36 (112)
T PF12847_consen 5 VLDLGCGTGRLSIALAR----LFPGARVVGVDISPE 36 (112)
T ss_dssp EEEETTTTSHHHHHHHH----HHTTSEEEEEESSHH
T ss_pred EEEEcCcCCHHHHHHHh----cCCCCEEEEEeCCHH
Confidence 45677788776554433 457789999998654
No 231
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=31.08 E-value=1.5e+02 Score=23.50 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=21.9
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
+||+||+. ++....|+..++++.+. ++.|+|++
T Consensus 183 ~~~ai~~~--~d~~a~g~~~al~~~g~~iP~dv~vig~d 219 (270)
T cd06294 183 RPTAIVAT--DDLLALGVLKVLNELGLKVPEDLSIIGFN 219 (270)
T ss_pred CCCEEEEC--ChHHHHHHHHHHHHcCCCCCcceEEEeeC
Confidence 47877774 45566688888877653 45666664
No 232
>PRK06128 oxidoreductase; Provisional
Probab=31.03 E-value=3e+02 Score=22.63 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=17.0
Q ss_pred HhhhHHHHHHhhCCCccEEEEecCc
Q 027277 62 YETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 62 ~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
...+..++.+++ +.+|.+|..+|.
T Consensus 121 v~~~~~~~~~~~-g~iD~lV~nAg~ 144 (300)
T PRK06128 121 CRQLVERAVKEL-GGLDILVNIAGK 144 (300)
T ss_pred HHHHHHHHHHHh-CCCCEEEECCcc
Confidence 344555666666 579999999885
No 233
>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor. Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.
Probab=30.99 E-value=2.8e+02 Score=22.93 Aligned_cols=33 Identities=9% Similarity=0.155 Sum_probs=22.4
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC---CCcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN---PNIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~---~~~~vigVe 110 (225)
.||+|||. +-.+..|+..++++.+ .++.|+|.+
T Consensus 238 ~~~Ai~~~--~D~~A~g~~~al~~~g~vP~dvsvigfd 273 (327)
T TIGR02417 238 LPQALFTT--SYTLLEGVLDYMLERPLLDSQLHLATFG 273 (327)
T ss_pred CCcEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEEC
Confidence 47888876 3345668888888766 245677764
No 234
>COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion]
Probab=30.94 E-value=2.4e+02 Score=25.29 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=42.9
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCC--ChHhhH----------hhhHHHHHHhhC-CCc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPA--NPEIHY----------ETTGPEIWNDSG-GKV 77 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~g~----------~t~~~Ei~~Ql~-~~~ 77 (225)
+.+...|.+|++... -+++.+.+.+++.+..+.-.+-+-++-. ....+| ..+| |.+-|+. ++|
T Consensus 72 ~~v~~~Gg~vy~A~~---aedA~~ii~~iv~~k~~k~vVKsKSmvseEIgln~~Le~~G~ev~ETDLG-E~IlQl~~~~P 147 (459)
T COG1139 72 ENVTRNGGHVYFAKD---AEDAREIIGEIVGEKNGKKVVKSKSMVSEEIGLNHYLEEKGIEVWETDLG-ELILQLAGEPP 147 (459)
T ss_pred HHHHHcCCEEEEeCC---HHHHHHHHHHHHhhccCcEEEEecchhHHHhhhHHHHHHcCCeEEEccHH-HHHHHhcCCCC
Confidence 345678999999884 4688999999988664555443221110 001111 1133 6667775 459
Q ss_pred cEEEEec
Q 027277 78 DAFIAGI 84 (225)
Q Consensus 78 d~iv~~~ 84 (225)
.|||+|+
T Consensus 148 sHIV~PA 154 (459)
T COG1139 148 SHIVAPA 154 (459)
T ss_pred cceeccc
Confidence 9999996
No 235
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=30.92 E-value=2.3e+02 Score=21.16 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCccEEEEecCcchh-------------HHHHHHHHHhhCCCcEEEEEeCC
Q 027277 75 GKVDAFIAGIGTGGT-------------VTGAGRFLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~-------------~aGi~~~~k~~~~~~~vigVe~~ 112 (225)
.+||.|++.+|+--+ +..+...+++.++.++|+-+.|.
T Consensus 55 ~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~ 105 (189)
T cd01825 55 LPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILPNASILLVGPP 105 (189)
T ss_pred CCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCC
Confidence 359999999986421 22223333444678899888763
No 236
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=30.85 E-value=3e+02 Score=22.58 Aligned_cols=69 Identities=13% Similarity=0.023 Sum_probs=42.4
Q ss_pred HHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEe
Q 027277 11 IILRALGA-EVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAG 83 (225)
Q Consensus 11 ~~~~~~GA-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~ 83 (225)
++++..+. +++..+-.. --++.+.|.+++++...--.++. .+|- +-|...+.+|++++.+ ..+|.=|+|
T Consensus 40 d~i~l~~~k~v~~s~m~~-Ei~Ra~~AielA~~G~~ValVSs-GDpg--VYgMA~lv~E~~~~~~~~~v~veVvP 110 (249)
T COG1010 40 DLIELRPGKEVIRSGMRE-EIERAKEAIELAAEGRDVALVSS-GDPG--VYGMAGLVLEAAEEEGWYDVDVEVVP 110 (249)
T ss_pred HHHhcCCCCEEEeCCcHh-HHHHHHHHHHHHhcCCeEEEEeC-CCcc--HHHhHHHHHHHHHhcCCCCccEEEeC
Confidence 34443333 455544321 22456777788877423444554 3453 6789999999999875 358888888
No 237
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=30.82 E-value=2.6e+02 Score=21.78 Aligned_cols=51 Identities=12% Similarity=0.023 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHhcCCee--cchHHHHHHHHHHHhhcC----CCCCCEEEEEecCCCC
Q 027277 152 SEEAIETSKLLALKEGLLV--GISSGAAAAAAIRVAKRP----ENAGKLIVVIFPSAGE 204 (225)
Q Consensus 152 d~e~~~a~~~l~~~eGi~~--epssgaalaa~~~~~~~~----~~~~~~vv~v~~~gG~ 204 (225)
..+...++..... ++.- +.+.+.++..+.+..... ...-.++++|+++|+.
T Consensus 87 ~~~~~~ai~~~~~--~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~ 143 (193)
T cd01477 87 FDDLYSQIQGSLT--DVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYN 143 (193)
T ss_pred HHHHHHHHHHHhh--ccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCcc
Confidence 3555566654221 1111 346677777777765421 1123688889876644
No 238
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.79 E-value=3.3e+02 Score=23.02 Aligned_cols=24 Identities=21% Similarity=-0.018 Sum_probs=19.6
Q ss_pred ChHHHHHHHHHcCCEEEEeCCCCC
Q 027277 5 YSIERRIILRALGAEVYLADPAVG 28 (225)
Q Consensus 5 ~~~~k~~~~~~~GA~v~~~~~~~~ 28 (225)
-|+.-++++|+.|-.++.++...+
T Consensus 110 GP~~vl~qLraagV~vv~v~~~~~ 133 (300)
T COG4558 110 GPATVLDQLRAAGVPVVTVPEQPT 133 (300)
T ss_pred CcHHHHHHHHHcCCcEEEcCCCCC
Confidence 367889999999999999986443
No 239
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=30.77 E-value=75 Score=27.87 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=24.9
Q ss_pred EEEEecC--cchhH-HHHHHHHHhhCCCcEEEEEe
Q 027277 79 AFIAGIG--TGGTV-TGAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 79 ~iv~~~G--~Gg~~-aGi~~~~k~~~~~~~vigVe 110 (225)
.|++.+| ||.++ +++.+++|...++.+.+||-
T Consensus 3 ki~i~AGE~SGDllGa~LikaLk~~~~~~efvGvg 37 (381)
T COG0763 3 KIALSAGEASGDLLGAGLIKALKARYPDVEFVGVG 37 (381)
T ss_pred eEEEEecccchhhHHHHHHHHHHhhCCCeEEEEec
Confidence 3566666 66665 78888999988899999993
No 240
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=30.77 E-value=2.6e+02 Score=24.60 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=14.6
Q ss_pred HHHHHHhhCCCccEEEEecCcchhH
Q 027277 66 GPEIWNDSGGKVDAFIAGIGTGGTV 90 (225)
Q Consensus 66 ~~Ei~~Ql~~~~d~iv~~~G~Gg~~ 90 (225)
+.+++++. ++| +|+++|||+.+
T Consensus 98 ~~~~~r~~--~~D-~IiavGGGS~i 119 (395)
T PRK15454 98 AVAQLRES--GCD-GVIAFGGGSVL 119 (395)
T ss_pred HHHHHHhc--CcC-EEEEeCChHHH
Confidence 44555543 477 57799998876
No 241
>PLN03139 formate dehydrogenase; Provisional
Probab=30.69 E-value=3.8e+02 Score=23.63 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=53.9
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHH--------HHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccE
Q 027277 8 ERRIILRALGAEVYLADPAVGFEGFV--------KKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~ 79 (225)
.-.+.++.+|++|+.+++...-.+.. ....++.++- +...++- |.+ ..-...+..|++.+++ +.+
T Consensus 213 ~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~s-DvV~l~l---Plt-~~T~~li~~~~l~~mk--~ga 285 (386)
T PLN03139 213 LLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKC-DVVVINT---PLT-EKTRGMFNKERIAKMK--KGV 285 (386)
T ss_pred HHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhC-CEEEEeC---CCC-HHHHHHhCHHHHhhCC--CCe
Confidence 34567789999999888632111110 1123444443 5555542 333 2334445678888884 789
Q ss_pred EEEecCcchhH--HHHHHHHHhhCCCcEEEEEeC
Q 027277 80 FIAGIGTGGTV--TGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 80 iv~~~G~Gg~~--aGi~~~~k~~~~~~~vigVe~ 111 (225)
+++-+|-|+.+ .-+..+++. ....=.+.++
T Consensus 286 ~lIN~aRG~iVDe~AL~~AL~s--G~l~GAaLDV 317 (386)
T PLN03139 286 LIVNNARGAIMDTQAVADACSS--GHIGGYGGDV 317 (386)
T ss_pred EEEECCCCchhhHHHHHHHHHc--CCceEEEEcC
Confidence 99999999887 444555543 2344344444
No 242
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.63 E-value=2.7e+02 Score=21.97 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=24.6
Q ss_pred HHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 67 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 67 ~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.+++++- ++||+|+++ +.....|+..++++.+. ++.|+|.+
T Consensus 169 ~~~l~~~-~~~~ai~~~--~d~~a~~~~~~l~~~g~~vp~di~v~g~d 213 (269)
T cd06288 169 AALLDLD-DRPTAIFCG--NDRMAMGAYQALLERGLRIPQDVSVVGFD 213 (269)
T ss_pred HHHHhCC-CCCCEEEEe--CcHHHHHHHHHHHHcCCCCcccceEEeeC
Confidence 3444433 357888775 33455588888887652 45666664
No 243
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=30.33 E-value=3.4e+02 Score=23.04 Aligned_cols=84 Identities=20% Similarity=0.241 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccEEEEecC
Q 027277 7 IERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIG 85 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G 85 (225)
..=+++.+++|+.++.+-.+. +... ++++. +.-++..|.+.. ...++.+-.++ .+|.|+-++|
T Consensus 157 ~~aiQlAk~~G~~~v~~~~s~------~k~~-~~~~l-GAd~vi~y~~~~--------~~~~v~~~t~g~gvDvv~D~vG 220 (326)
T COG0604 157 SAAIQLAKALGATVVAVVSSS------EKLE-LLKEL-GADHVINYREED--------FVEQVRELTGGKGVDVVLDTVG 220 (326)
T ss_pred HHHHHHHHHcCCcEEEEecCH------HHHH-HHHhc-CCCEEEcCCccc--------HHHHHHHHcCCCCceEEEECCC
Confidence 345788899997665555321 1222 44555 433333343322 23333333333 4999999997
Q ss_pred cchhHHHHHHHHHhhCCCcEEEEEe
Q 027277 86 TGGTVTGAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 86 ~Gg~~aGi~~~~k~~~~~~~vigVe 110 (225)
+ .++.- .++.+.++-+++-+-
T Consensus 221 ~-~~~~~---~l~~l~~~G~lv~ig 241 (326)
T COG0604 221 G-DTFAA---SLAALAPGGRLVSIG 241 (326)
T ss_pred H-HHHHH---HHHHhccCCEEEEEe
Confidence 6 44433 344445556666553
No 244
>PRK03525 crotonobetainyl-CoA:carnitine CoA-transferase; Provisional
Probab=30.28 E-value=2.4e+02 Score=24.84 Aligned_cols=16 Identities=25% Similarity=0.356 Sum_probs=13.0
Q ss_pred HHHHHcCCEEEEeCCC
Q 027277 11 IILRALGAEVYLADPA 26 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~ 26 (225)
.++-.+||+||.+++.
T Consensus 31 ~lLAdlGAeVIKVE~p 46 (405)
T PRK03525 31 QMFAEWGAEVIWIENV 46 (405)
T ss_pred HHHHHcCCcEEEECCC
Confidence 4567899999999854
No 245
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=30.27 E-value=1.8e+02 Score=19.84 Aligned_cols=33 Identities=27% Similarity=0.325 Sum_probs=20.3
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
..+=+.+|+|... ..+....+..++++++++..
T Consensus 22 ~vldlG~G~G~~~----~~l~~~~~~~~v~~vD~s~~ 54 (124)
T TIGR02469 22 VLWDIGAGSGSIT----IEAARLVPNGRVYAIERNPE 54 (124)
T ss_pred EEEEeCCCCCHHH----HHHHHHCCCceEEEEcCCHH
Confidence 3555566665543 23334456689999998754
No 246
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.21 E-value=2.7e+02 Score=21.79 Aligned_cols=71 Identities=23% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.++.. .+...+...++ ++.+..+...+. |... ......+..++.++. +.+|.||..+|.
T Consensus 22 a~~l~~~G~~vi~~~r~--~~~~~~~~~~~-~~~~~~~~~~~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~ 92 (253)
T PRK08217 22 AEYLAQKGAKLALIDLN--QEKLEEAVAEC-GALGTEVRGYAA-NVTD-EEDVEATFAQIAEDF-GQLNGLINNAGI 92 (253)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHH-HhcCCceEEEEc-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCc
Confidence 34456679999888753 22222222222 222222222222 2222 233344445555555 468999999874
No 247
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=30.21 E-value=1.2e+02 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.081 Sum_probs=23.5
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
-..+-+++|+|+...-+.. ...+..+|++++.+..
T Consensus 34 ~~VLDiG~GtG~~~~~l~~---~~~~~~~v~~vDis~~ 68 (188)
T TIGR00438 34 DTVLDLGAAPGGWSQVAVE---QVGGKGRVIAVDLQPM 68 (188)
T ss_pred CEEEEecCCCCHHHHHHHH---HhCCCceEEEEecccc
Confidence 3578888898876544332 2235668999998753
No 248
>PTZ00387 epsilon tubulin; Provisional
Probab=30.12 E-value=90 Score=28.23 Aligned_cols=58 Identities=17% Similarity=0.282 Sum_probs=30.2
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhhC----------CCccEEEEecC-cchhHHHHHH----HHHhhCCCc
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDSG----------GKVDAFIAGIG-TGGTVTGAGR----FLKEKNPNI 104 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~----------~~~d~iv~~~G-~Gg~~aGi~~----~~k~~~~~~ 104 (225)
++..+.+...+|..||.+.|.|+.+++. +.++.+++-.| +|||=+|++. .+++.+|+.
T Consensus 91 ~i~~~~GaGNnwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~ 163 (465)
T PTZ00387 91 FVSDVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHV 163 (465)
T ss_pred ccccCCCCCCCcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcchhHHHHHHHHHHHhcccC
Confidence 4444444555666788776765554431 23554444443 3444455554 445556654
No 249
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=30.12 E-value=2.9e+02 Score=22.15 Aligned_cols=73 Identities=12% Similarity=0.062 Sum_probs=38.7
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC-CCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRT-PNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
-.+.+-..|++|+.+.......+. ..++.++. ++.....+. |-.. ......+..++.+++ +++|.+|..+|..
T Consensus 25 ia~~la~~G~~v~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~-Dv~d-~~~v~~~~~~~~~~~-g~ld~lv~nag~~ 98 (257)
T PRK08594 25 IARSLHNAGAKLVFTYAGERLEKE---VRELADTLEGQESLLLPC-DVTS-DEEITACFETIKEEV-GVIHGVAHCIAFA 98 (257)
T ss_pred HHHHHHHCCCEEEEecCcccchHH---HHHHHHHcCCCceEEEec-CCCC-HHHHHHHHHHHHHhC-CCccEEEECcccC
Confidence 344555679999988642111122 22233221 122222222 2333 344555666777777 5799999888753
No 250
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=30.10 E-value=1.6e+02 Score=19.53 Aligned_cols=45 Identities=16% Similarity=0.239 Sum_probs=31.7
Q ss_pred HHHHhhCCCccEEEEecCc-chhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 68 EIWNDSGGKVDAFIAGIGT-GGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 68 Ei~~Ql~~~~d~iv~~~G~-Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
+.+++. .||.+++-..- +.....+...++...++++++.+.....
T Consensus 37 ~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t~~~~ 82 (112)
T PF00072_consen 37 ELLKKH--PPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVTDEDD 82 (112)
T ss_dssp HHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEESSTS
T ss_pred HHhccc--CceEEEEEeeeccccccccccccccccccccEEEecCCCC
Confidence 444443 49999988653 3455577778888889999999976554
No 251
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=30.10 E-value=1.8e+02 Score=24.47 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEE
Q 027277 30 EGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 108 (225)
Q Consensus 30 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vig 108 (225)
...++.+.+..++.+..+-....... .=+.|++++.. ..+|.||+. |+=||+.-++-++......+ +|
T Consensus 19 ~~~~~~~~~~l~~~g~~~~~~~t~~~--------g~a~~~a~~a~~~~~D~via~-GGDGTv~evingl~~~~~~~--Lg 87 (301)
T COG1597 19 KKLLREVEELLEEAGHELSVRVTEEA--------GDAIEIAREAAVEGYDTVIAA-GGDGTVNEVANGLAGTDDPP--LG 87 (301)
T ss_pred hhHHHHHHHHHHhcCCeEEEEEeecC--------ccHHHHHHHHHhcCCCEEEEe-cCcchHHHHHHHHhcCCCCc--eE
Confidence 34455556655665333333322211 12446666653 247766554 55568888888887765444 88
Q ss_pred EeCCCCc
Q 027277 109 IEPSESA 115 (225)
Q Consensus 109 Ve~~~~~ 115 (225)
+=|.|+.
T Consensus 88 ilP~GT~ 94 (301)
T COG1597 88 ILPGGTA 94 (301)
T ss_pred EecCCch
Confidence 8888875
No 252
>PRK05872 short chain dehydrogenase; Provisional
Probab=30.10 E-value=3.1e+02 Score=22.52 Aligned_cols=71 Identities=17% Similarity=0.145 Sum_probs=37.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... .+...+.+.++. .....+++ +. |... ...-..+..++.+++ +++|.+|..+|..
T Consensus 26 a~~l~~~G~~V~~~~r~--~~~l~~~~~~l~-~~~~~~~~-~~-Dv~d-~~~v~~~~~~~~~~~-g~id~vI~nAG~~ 96 (296)
T PRK05872 26 ARRLHARGAKLALVDLE--EAELAALAAELG-GDDRVLTV-VA-DVTD-LAAMQAAAEEAVERF-GGIDVVVANAGIA 96 (296)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHhc-CCCcEEEE-Ee-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCcC
Confidence 34456679999888752 222222222221 11122221 12 2333 233444556777777 5799999999863
No 253
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.08 E-value=1.5e+02 Score=23.64 Aligned_cols=34 Identities=29% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
..||+||+. +..+..|+..++++.+. ++.|+|.+
T Consensus 175 ~~~~ai~~~--~d~~a~g~~~~l~~~g~~ip~dv~iig~d 212 (269)
T cd06281 175 DRPTAIIAG--GTQVLVGVLRALREAGLRIPRDLSVISIG 212 (269)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHcCCCCCcceeEEEec
Confidence 358888864 44456688889887653 45677764
No 254
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=29.97 E-value=2.2e+02 Score=20.68 Aligned_cols=68 Identities=18% Similarity=0.137 Sum_probs=34.5
Q ss_pred HcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 15 ALGA-EVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 15 ~~GA-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
..|+ .|+.+.++.+.+...+...++.... ..+.+-+. |... ..--.++..++.++. +.+|.+|..+|.
T Consensus 22 ~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~-D~~~-~~~~~~~~~~~~~~~-~~ld~li~~ag~ 90 (167)
T PF00106_consen 22 RRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIEC-DLSD-PESIRALIEEVIKRF-GPLDILINNAGI 90 (167)
T ss_dssp HTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEES-ETTS-HHHHHHHHHHHHHHH-SSESEEEEECSC
T ss_pred hcCceEEEEeeecccccccccccccccccc-cccccccc-cccc-ccccccccccccccc-cccccccccccc
Confidence 3366 5566664311233333344444333 33333333 2333 344566666666555 568999988776
No 255
>COG3635 Predicted phosphoglycerate mutase, AP superfamily [Carbohydrate transport and metabolism]
Probab=29.81 E-value=1e+02 Score=27.10 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=30.3
Q ss_pred HHHHcCCEEEEeCCC-----CChHHHHHHHHHHHHhCCCeEEeCC
Q 027277 12 ILRALGAEVYLADPA-----VGFEGFVKKGEEILNRTPNGYILGQ 51 (225)
Q Consensus 12 ~~~~~GA~v~~~~~~-----~~~~~~~~~a~~~~~~~~~~~~~~~ 51 (225)
..+..|++|+.+++. .+|++-.+.+.+..+++ +++|+|-
T Consensus 261 lar~~GmDvi~vegatG~~dtn~~~k~k~a~eal~~y-Dfv~vhi 304 (408)
T COG3635 261 LARLVGMDVIEVEGATGYIDTNYRGKAKAAIEALKEY-DFVFVHI 304 (408)
T ss_pred HHHHhCCceeecccccCccCccHHHHHHHHHHHHhhC-CEEEEEe
Confidence 458899999999873 25677778888888888 7888863
No 256
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=29.68 E-value=1.5e+02 Score=23.58 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=23.0
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||+ +-.+..|+..++++.+. +++|+|++
T Consensus 177 ~~~ai~~~--~d~~a~g~~~al~~~g~~vp~di~i~g~d 213 (269)
T cd06293 177 PPTAIFAA--SDEIAIGLLEVLRERGLSIPGDMSLVGFD 213 (269)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCccceEEEeec
Confidence 47888886 44455688888887652 46777774
No 257
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=29.55 E-value=3e+02 Score=22.11 Aligned_cols=71 Identities=11% Similarity=0.126 Sum_probs=41.1
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+-..|++|+.+... +...+.+.++.++.+... ..+. |-.. ......+..++.++. +.+|.+|..+|.+
T Consensus 25 a~~l~~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~-Dv~~-~~~v~~~~~~~~~~~-g~iD~lVnnAG~~ 95 (261)
T PRK08690 25 AKACREQGAELAFTYVV---DKLEERVRKMAAELDSEL-VFRC-DVAS-DDEINQVFADLGKHW-DGLDGLVHSIGFA 95 (261)
T ss_pred HHHHHHCCCEEEEEcCc---HHHHHHHHHHHhccCCce-EEEC-CCCC-HHHHHHHHHHHHHHh-CCCcEEEECCccC
Confidence 44555679999887542 222334445544432222 2232 3333 344555666777777 5799999999865
No 258
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=29.43 E-value=1.9e+02 Score=25.52 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=45.8
Q ss_pred HHHHHHcCC-EEEEeCCCCChHHHH-HHHHHHHHhCCCeEEeCCCC---CCCChHhhHhhhHHHHHHhhCCCccEEEE-e
Q 027277 10 RIILRALGA-EVYLADPAVGFEGFV-KKGEEILNRTPNGYILGQFE---NPANPEIHYETTGPEIWNDSGGKVDAFIA-G 83 (225)
Q Consensus 10 ~~~~~~~GA-~v~~~~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~---~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~-~ 83 (225)
.+....+|| +++.++.. ++-. +.+....+. +..|-..|- .... --......|++++.+ .++|.- +
T Consensus 43 ~~kA~~~Ga~~~~vvD~r---~ef~~~~i~~aI~a--nA~Yeg~YpL~tsl~R--plIa~~~v~~A~~~g--a~~vaHG~ 113 (388)
T PF00764_consen 43 EEKALKLGASKHIVVDAR---DEFAEDYIFPAIKA--NALYEGRYPLSTSLAR--PLIAKKLVEVAREEG--ADAVAHGC 113 (388)
T ss_dssp HHHHHHHT-SEEEEEE-H---HHHHHHTHHHHHHT--T--BTTTB--CCCCHH--HHHHHHHHHHHHHHT---SEEE---
T ss_pred HHHHHhcCCceeeecchH---HHHHHHHHHHHHHH--HHHhCCCccccccchH--HHHHHHHHHHHHHcC--CeEEeccC
Confidence 344567798 88888742 1211 222222222 223322221 1111 122334557777773 677877 4
Q ss_pred cCcchhHHHHHHHHHhhCCCcEEEE
Q 027277 84 IGTGGTVTGAGRFLKEKNPNIKVYG 108 (225)
Q Consensus 84 ~G~Gg~~aGi~~~~k~~~~~~~vig 108 (225)
+|-|--..=.-.+++.+.|+.+|++
T Consensus 114 TgkGNDqvRFe~~~~al~P~l~via 138 (388)
T PF00764_consen 114 TGKGNDQVRFELSIRALAPELKVIA 138 (388)
T ss_dssp -TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred CcCCCchhHHHHHHHHhCcCCcEec
Confidence 5778888778888888899988865
No 259
>COG0683 LivK ABC-type branched-chain amino acid transport systems, periplasmic component [Amino acid transport and metabolism]
Probab=29.27 E-value=3.7e+02 Score=23.04 Aligned_cols=95 Identities=14% Similarity=0.149 Sum_probs=56.2
Q ss_pred HHHcCC-EEEEeCCCCChH-HHHHHHHHHHHhCCCeEEe-CCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchh
Q 027277 13 LRALGA-EVYLADPAVGFE-GFVKKGEEILNRTPNGYIL-GQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 89 (225)
Q Consensus 13 ~~~~GA-~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~ 89 (225)
.+..|. ++.++.....|. ...+..++..++.+..... ..|. |.. .. +.++..+|.+. .|| +|+-.|.+..
T Consensus 143 ~~~~~~k~v~ii~~~~~yg~~~~~~~~~~l~~~G~~~~~~~~~~-~~~-~~-~~~~v~~i~~~---~~d-~v~~~~~~~~ 215 (366)
T COG0683 143 VKKGGKKRVAIIGDDYAYGEGLADAFKAALKALGGEVVVEEVYA-PGD-TD-FSALVAKIKAA---GPD-AVLVGGYGPD 215 (366)
T ss_pred HHhcCCcEEEEEeCCCCcchhHHHHHHHHHHhCCCeEEEEEeeC-CCC-CC-hHHHHHHHHhc---CCC-EEEECCCCcc
Confidence 356677 777777544443 3344455556666443222 2222 222 11 56666666443 478 4555567777
Q ss_pred HHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 90 VTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 90 ~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.+.+.+.+++.+-..+++.......
T Consensus 216 ~~~~~r~~~~~G~~~~~~~~~~~~~ 240 (366)
T COG0683 216 AALFLRQAREQGLKAKLIGGDGAGT 240 (366)
T ss_pred chHHHHHHHHcCCCCccccccccCc
Confidence 8888999999888888777765554
No 260
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=29.25 E-value=74 Score=28.52 Aligned_cols=63 Identities=27% Similarity=0.351 Sum_probs=33.7
Q ss_pred EEeCCCCCCCChHhhHhhhHHHHHHhhC----------CCccEEEEecC-cchhHHHHHHH----HHhhCCCcEEEEE
Q 027277 47 YILGQFENPANPEIHYETTGPEIWNDSG----------GKVDAFIAGIG-TGGTVTGAGRF----LKEKNPNIKVYGI 109 (225)
Q Consensus 47 ~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~----------~~~d~iv~~~G-~Gg~~aGi~~~----~k~~~~~~~vigV 109 (225)
++..+.+...+|..||.+.|.|+.++.- +.++.+++-.+ +|||=+|++.. +++.+|+..++.+
T Consensus 86 ~~~~~~gagnnwa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~ 163 (446)
T cd02189 86 VICQQSGSGNNWAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNI 163 (446)
T ss_pred eeecCCCCccchhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeee
Confidence 4444445556777788887776655531 23554444322 34454555554 4555665545444
No 261
>PRK07791 short chain dehydrogenase; Provisional
Probab=29.19 E-value=3.2e+02 Score=22.35 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=38.8
Q ss_pred HHHHHcCCEEEEeCCCC-------ChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEe
Q 027277 11 IILRALGAEVYLADPAV-------GFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAG 83 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~ 83 (225)
+.+...|++|+.+.... .-+...+.+.++.+. ++.....+. |... ..-...+..++.++. +.+|.+|..
T Consensus 24 ~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~-Dv~~-~~~v~~~~~~~~~~~-g~id~lv~n 99 (286)
T PRK07791 24 LAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAA-GGEAVANGD-DIAD-WDGAANLVDAAVETF-GGLDVLVNN 99 (286)
T ss_pred HHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhc-CCceEEEeC-CCCC-HHHHHHHHHHHHHhc-CCCCEEEEC
Confidence 44556799998876321 012222333334332 233322222 3333 334455566777777 579999999
Q ss_pred cCcc
Q 027277 84 IGTG 87 (225)
Q Consensus 84 ~G~G 87 (225)
+|..
T Consensus 100 AG~~ 103 (286)
T PRK07791 100 AGIL 103 (286)
T ss_pred CCCC
Confidence 8853
No 262
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=29.18 E-value=1.3e+02 Score=25.53 Aligned_cols=51 Identities=18% Similarity=0.142 Sum_probs=34.1
Q ss_pred hHhhhHHHHHHhhCCCcc--EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 61 HYETTGPEIWNDSGGKVD--AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 61 g~~t~~~Ei~~Ql~~~~d--~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
|+-.+..|+++.+...|. +|=|.+|+||-..-+... ..++.+|+|++-+..
T Consensus 3 H~pVll~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~---~~~~g~VigiD~D~~ 55 (296)
T PRK00050 3 HIPVLLDEVVDALAIKPDGIYVDGTFGGGGHSRAILER---LGPKGRLIAIDRDPD 55 (296)
T ss_pred CccccHHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHh---CCCCCEEEEEcCCHH
Confidence 556677899998864553 444678888776655443 234678999976653
No 263
>PRK07063 short chain dehydrogenase; Provisional
Probab=29.15 E-value=2.9e+02 Score=21.90 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=39.4
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh-CCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNR-TPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... .+...+.+.++... .+..+...+. |... ......+..++.++. +.+|.+|..+|..
T Consensus 24 a~~l~~~G~~vv~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-g~id~li~~ag~~ 97 (260)
T PRK07063 24 ARAFAREGAAVALADLD--AALAERAAAAIARDVAGARVLAVPA-DVTD-AASVAAAVAAAEEAF-GPLDVLVNNAGIN 97 (260)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhccCCceEEEEEc-cCCC-HHHHHHHHHHHHHHh-CCCcEEEECCCcC
Confidence 44556679999988753 22222333333221 1122222222 2333 344555566777776 5799999998853
No 264
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=29.11 E-value=1.2e+02 Score=25.67 Aligned_cols=75 Identities=17% Similarity=0.057 Sum_probs=44.4
Q ss_pred hHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC--ccEEEEe
Q 027277 6 SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK--VDAFIAG 83 (225)
Q Consensus 6 ~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~--~d~iv~~ 83 (225)
.....+.++..|-+++....... .++.+.+++...+.-+...+-. |=+|+ .|+..-+.+. +..-++|
T Consensus 22 ~~~~~~~l~~~g~~~~~~~t~~~-g~a~~~a~~a~~~~~D~via~G---------GDGTv-~evingl~~~~~~~LgilP 90 (301)
T COG1597 22 LREVEELLEEAGHELSVRVTEEA-GDAIEIAREAAVEGYDTVIAAG---------GDGTV-NEVANGLAGTDDPPLGILP 90 (301)
T ss_pred HHHHHHHHHhcCCeEEEEEeecC-ccHHHHHHHHHhcCCCEEEEec---------CcchH-HHHHHHHhcCCCCceEEec
Confidence 45566778889998876654322 5788888887766323333322 22222 3554444221 2267999
Q ss_pred cCcchhHH
Q 027277 84 IGTGGTVT 91 (225)
Q Consensus 84 ~G~Gg~~a 91 (225)
+||+-.+|
T Consensus 91 ~GT~NdfA 98 (301)
T COG1597 91 GGTANDFA 98 (301)
T ss_pred CCchHHHH
Confidence 99987764
No 265
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.99 E-value=1.5e+02 Score=23.92 Aligned_cols=33 Identities=18% Similarity=0.271 Sum_probs=20.7
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
+||+||++ +.....|+..++++.+ .++.|+|.+
T Consensus 195 ~~~ai~~~--~d~~a~gv~~al~~~g~~ip~di~vig~d 231 (283)
T cd06279 195 RPTAILCM--SDVLALGALQVARELGLRVPEDLSVVGFD 231 (283)
T ss_pred CCcEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEeeeC
Confidence 46777755 3445567777877654 246676664
No 266
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=28.91 E-value=2.7e+02 Score=21.46 Aligned_cols=49 Identities=16% Similarity=0.078 Sum_probs=32.7
Q ss_pred HhhhHHHHHHhhCCCccEEEEecCc-chhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 62 YETTGPEIWNDSGGKVDAFIAGIGT-GGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 62 ~~t~~~Ei~~Ql~~~~d~iv~~~G~-Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
|...+.|+-+.+. +.++.++.-|+ .|++.-++++.++. .-+++||-|..
T Consensus 17 ~~~~A~~lG~~la-~~g~~lV~GGg~~GlM~a~a~ga~~~--gG~viGi~p~~ 66 (178)
T TIGR00730 17 YKELAAELGAYLA-GQGWGLVYGGGRVGLMGAIADAAMEN--GGTAVGVNPSG 66 (178)
T ss_pred HHHHHHHHHHHHH-HCCCEEEECCChHhHHHHHHHHHHhc--CCeEEEecchh
Confidence 5556666666663 33555555554 78888888888764 35789997654
No 267
>PRK10727 DNA-binding transcriptional regulator GalR; Provisional
Probab=28.75 E-value=1.5e+02 Score=24.80 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=24.0
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
..||+|||. +-.+..|+..++++.+- ++.|+|.+
T Consensus 236 ~~~~ai~~~--nD~~A~g~~~al~~~G~~vP~disVigfD 273 (343)
T PRK10727 236 RNFTAVACY--NDSMAAGAMGVLNDNGIDVPGEISLIGFD 273 (343)
T ss_pred CCCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceeEEeec
Confidence 347888875 45566688889988763 56777774
No 268
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=28.54 E-value=4.1e+02 Score=23.37 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=42.0
Q ss_pred HHHHHHHHHcCCE--EEEeCCCCChHHHHHHHHHHHHhCCCeEEe--CCCCCCCChHhhHhhhHHHHHHhhCCCccEEEE
Q 027277 7 IERRIILRALGAE--VYLADPAVGFEGFVKKGEEILNRTPNGYIL--GQFENPANPEIHYETTGPEIWNDSGGKVDAFIA 82 (225)
Q Consensus 7 ~~k~~~~~~~GA~--v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~ 82 (225)
..-.+.++.+|.+ ++++++.-.-....+...+..++.+-.+.+ .--.||.. ....-+.|.+++. ++|. |+
T Consensus 18 ~~l~~~~~~~g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~---~~v~~~~~~~~~~--~~D~-iI 91 (377)
T COG1454 18 KELGEEVKRLGAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTI---ETVEAGAEVAREF--GPDT-II 91 (377)
T ss_pred HHHHHHHHhcCCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCH---HHHHHHHHHHHhc--CCCE-EE
Confidence 3444555667753 455554211112334444444444212222 22224432 3444566777776 4775 66
Q ss_pred ecCcchhHHHHHHHHH
Q 027277 83 GIGTGGTVTGAGRFLK 98 (225)
Q Consensus 83 ~~G~Gg~~aGi~~~~k 98 (225)
++|||+.+ -++++..
T Consensus 92 alGGGS~~-D~AK~i~ 106 (377)
T COG1454 92 ALGGGSVI-DAAKAIA 106 (377)
T ss_pred EeCCccHH-HHHHHHH
Confidence 88888776 4455444
No 269
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=28.50 E-value=93 Score=24.06 Aligned_cols=37 Identities=24% Similarity=0.155 Sum_probs=30.9
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
=+|+.+.|.|-|.+.+..+++..+...+|+-||=-..
T Consensus 8 i~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg 44 (173)
T TIGR00708 8 IIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKG 44 (173)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 4788899999999999999999888889988864443
No 270
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=28.42 E-value=59 Score=27.22 Aligned_cols=39 Identities=36% Similarity=0.585 Sum_probs=27.6
Q ss_pred ccEEEEe-cCcchhHHHHHHHHHh---hCCCcEEEEEeCCCCc
Q 027277 77 VDAFIAG-IGTGGTVTGAGRFLKE---KNPNIKVYGIEPSESA 115 (225)
Q Consensus 77 ~d~iv~~-~G~Gg~~aGi~~~~k~---~~~~~~vigVe~~~~~ 115 (225)
.+.|+=| ||+|+++..+...++. ......++|+|.....
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~ 89 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEA 89 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHH
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHH
Confidence 4567777 7999999888877642 2467899999987654
No 271
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=28.26 E-value=1.5e+02 Score=27.88 Aligned_cols=44 Identities=16% Similarity=0.163 Sum_probs=30.5
Q ss_pred hHHHHHHhhCCCccEEEEecCcchhHH--HHHHHHHhhCCCcEEEEEe
Q 027277 65 TGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 65 ~~~Ei~~Ql~~~~d~iv~~~G~Gg~~a--Gi~~~~k~~~~~~~vigVe 110 (225)
-+.|.++++ ++|++|+--|.|+.-. =++.++++.+.+++||||-
T Consensus 164 ~i~e~l~~l--~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIP 209 (610)
T PLN03028 164 AALAACEAL--KLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVP 209 (610)
T ss_pred HHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEec
Confidence 345667766 4899888776666432 3555677777789999994
No 272
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=28.16 E-value=1.8e+02 Score=23.30 Aligned_cols=34 Identities=21% Similarity=0.175 Sum_probs=22.4
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEeC
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIEP 111 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe~ 111 (225)
+||+||+.- .-...|+..++++.+ .+++|+|++-
T Consensus 180 ~~~ai~~~~--d~~a~g~~~~l~~~g~~vP~di~vvg~d~ 217 (269)
T cd06297 180 PPLAVFASA--DQQALGALQEAVELGLTVGEDVRVVGFDD 217 (269)
T ss_pred CCcEEEEcC--cHHHHHHHHHHHHcCCCCCCceEEEEECC
Confidence 478877763 335568888888765 2567777743
No 273
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=28.15 E-value=4.6e+02 Score=23.79 Aligned_cols=108 Identities=13% Similarity=0.123 Sum_probs=62.2
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCC---CCh-HHHHHHHHHHHHhCCCe-E----EeCCCC-CC--CChHhhHhhhHHH
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPA---VGF-EGFVKKGEEILNRTPNG-Y----ILGQFE-NP--ANPEIHYETTGPE 68 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~---~~~-~~~~~~a~~~~~~~~~~-~----~~~~~~-~~--~~~~~g~~t~~~E 68 (225)
+|..+...-+.....-|++.+..... +.| -++.+...+.+++-... . |-.+.. .. ..........+.+
T Consensus 288 ~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~ 367 (473)
T TIGR01064 288 RPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVE 367 (473)
T ss_pred CCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHH
Confidence 36666777777778889998777542 122 35555555544322111 1 111100 00 0112234444567
Q ss_pred HHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 69 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 69 i~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
+.+.+ +.++||+.+-+|.+.--+++ +.|++.|+++.|...
T Consensus 368 ~a~~~--~akaIVv~T~SG~TA~~vSr----~rp~~PIiAvT~~~~ 407 (473)
T TIGR01064 368 AAEKL--DAKAIVVLTESGRTARLLSK----YRPNAPIIAVTPNER 407 (473)
T ss_pred HHhhc--CCCEEEEEcCChHHHHHHHh----hCCCCCEEEEcCCHH
Confidence 76776 47899999999988655544 468899999977544
No 274
>PRK07677 short chain dehydrogenase; Provisional
Probab=27.92 E-value=3.1e+02 Score=21.70 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=37.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+... .+...+...++.+......++ +. |... ..-...+..++.+++ +.+|.+|..+|.
T Consensus 18 a~~l~~~G~~Vi~~~r~--~~~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~lI~~ag~ 88 (252)
T PRK07677 18 AKRFAEEGANVVITGRT--KEKLEEAKLEIEQFPGQVLTV-QM-DVRN-PEDVQKMVEQIDEKF-GRIDALINNAAG 88 (252)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcCCcEEEE-Ee-cCCC-HHHHHHHHHHHHHHh-CCccEEEECCCC
Confidence 44556689999888753 222222222332222122222 22 2222 233444555777777 469999988874
No 275
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=27.88 E-value=3.5e+02 Score=22.40 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=25.9
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCc-EEEEEeCCCCc
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNI-KVYGIEPSESA 115 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~-~vigVe~~~~~ 115 (225)
+|. |+.+|+=||+.-+..++....... .-+|+=|.++.
T Consensus 53 ~d~-vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTg 91 (293)
T TIGR03702 53 VST-VIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTA 91 (293)
T ss_pred CCE-EEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCch
Confidence 564 557788888888888886543222 24788888774
No 276
>PRK13057 putative lipid kinase; Reviewed
Probab=27.85 E-value=3.5e+02 Score=22.32 Aligned_cols=70 Identities=16% Similarity=0.025 Sum_probs=0.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCC-ccEEEEecCcch
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGK-VDAFIAGIGTGG 88 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~-~d~iv~~~G~Gg 88 (225)
+..++..|-++..... ..-.++.+.+++..... +...+ ..|=+|+. |++..+... +-.-++|.|||.
T Consensus 19 ~~~l~~~g~~~~~~~t-~~~~~a~~~~~~~~~~~-d~iiv---------~GGDGTv~-~v~~~l~~~~~~lgiiP~GT~N 86 (287)
T PRK13057 19 RAALEAAGLELVEPPA-EDPDDLSEVIEAYADGV-DLVIV---------GGGDGTLN-AAAPALVETGLPLGILPLGTAN 86 (287)
T ss_pred HHHHHHcCCeEEEEec-CCHHHHHHHHHHHHcCC-CEEEE---------ECchHHHH-HHHHHHhcCCCcEEEECCCCcc
Q ss_pred hHH
Q 027277 89 TVT 91 (225)
Q Consensus 89 ~~a 91 (225)
.++
T Consensus 87 dfa 89 (287)
T PRK13057 87 DLA 89 (287)
T ss_pred HHH
No 277
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=27.69 E-value=2.7e+02 Score=20.99 Aligned_cols=81 Identities=15% Similarity=0.128 Sum_probs=43.2
Q ss_pred EEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHh-hhHHHHHHhhCC-CccEEEEecCcchhHHHHHHHHH
Q 027277 21 YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYE-TTGPEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLK 98 (225)
Q Consensus 21 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~-t~~~Ei~~Ql~~-~~d~iv~~~G~Gg~~aGi~~~~k 98 (225)
+++++..+. ...+.+.+..++. +..|--. ...+|.. .--.++.+++.. .++.||+..|.-+.+.|+..++-
T Consensus 5 Ii~gs~SD~-~~~~~a~~~L~~~-gi~~~~~-----V~saHR~p~~l~~~~~~~~~~~~~viIa~AG~~a~Lpgvva~~t 77 (150)
T PF00731_consen 5 IIMGSTSDL-PIAEEAAKTLEEF-GIPYEVR-----VASAHRTPERLLEFVKEYEARGADVIIAVAGMSAALPGVVASLT 77 (150)
T ss_dssp EEESSGGGH-HHHHHHHHHHHHT-T-EEEEE-----E--TTTSHHHHHHHHHHTTTTTESEEEEEEESS--HHHHHHHHS
T ss_pred EEeCCHHHH-HHHHHHHHHHHHc-CCCEEEE-----EEeccCCHHHHHHHHHHhccCCCEEEEEECCCcccchhhheecc
Confidence 344433333 3456666666777 4322111 1012211 112356666642 48999999999899999988874
Q ss_pred hhCCCcEEEEEeCC
Q 027277 99 EKNPNIKVYGIEPS 112 (225)
Q Consensus 99 ~~~~~~~vigVe~~ 112 (225)
...||||-+.
T Consensus 78 ----~~PVIgvP~~ 87 (150)
T PF00731_consen 78 ----TLPVIGVPVS 87 (150)
T ss_dssp ----SS-EEEEEE-
T ss_pred ----CCCEEEeecC
Confidence 4569999433
No 278
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=27.62 E-value=3.2e+02 Score=21.78 Aligned_cols=33 Identities=24% Similarity=0.316 Sum_probs=22.8
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
.||+|||+ +.....|+..++++.+ .++.|+|.+
T Consensus 179 ~~~ai~~~--~d~~a~g~~~~l~~~g~~vp~di~v~g~d 215 (270)
T cd01544 179 LPTAFFIA--SDPMAIGALRALQEAGIKVPEDVSVISFN 215 (270)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 47887775 5667778888887764 246677764
No 279
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=27.62 E-value=2.9e+02 Score=23.63 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=44.6
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-e-EEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-G-YILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 87 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~-~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~G 87 (225)
+.++.+|-++.++.+...++...+...+..++.+- . +++.. .+|. .. ...++.+++. .++| +|+++|||
T Consensus 16 ~~~~~~g~~~liv~~~~~~~~~~~~v~~~l~~~~i~~~~~~~~-~~p~--~~----~v~~~~~~~~~~~~d-~IIavGGG 87 (349)
T cd08550 16 AILSTFGSKVAVVGGKTVLKKSRPRFEAALAKSIIVVDVIVFG-GECS--TE----EVVKALCGAEEQEAD-VIIGVGGG 87 (349)
T ss_pred HHHHHcCCeEEEEEChHHHHHHHHHHHHHHHhcCCeeEEEEcC-CCCC--HH----HHHHHHHHHHhcCCC-EEEEecCc
Confidence 45677887776555322334444444544444411 1 22211 2332 11 2334444443 2466 57789887
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEeC
Q 027277 88 GTVTGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 88 g~~aGi~~~~k~~~~~~~vigVe~ 111 (225)
+.+ =+++++.... ..+++.|-+
T Consensus 88 s~~-D~aK~ia~~~-~~p~i~VPT 109 (349)
T cd08550 88 KTL-DTAKAVADRL-DKPIVIVPT 109 (349)
T ss_pred HHH-HHHHHHHHHc-CCCEEEeCC
Confidence 665 4444443322 356777744
No 280
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=27.60 E-value=3.3e+02 Score=22.01 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=40.2
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+-..|++|+.+... +...+.+.++..+.+...++ +. |-.. ..-...+..++.++. +.+|.+|..+|.+
T Consensus 25 a~~la~~G~~vil~~r~---~~~~~~~~~~~~~~~~~~~~-~~-Dl~~-~~~v~~~~~~~~~~~-g~iD~linnAg~~ 95 (262)
T PRK07984 25 AQAMHREGAELAFTYQN---DKLKGRVEEFAAQLGSDIVL-PC-DVAE-DASIDAMFAELGKVW-PKFDGFVHSIGFA 95 (262)
T ss_pred HHHHHHCCCEEEEEecc---hhHHHHHHHHHhccCCceEe-ec-CCCC-HHHHHHHHHHHHhhc-CCCCEEEECCccC
Confidence 44455579999888642 12223344444443222222 22 3333 344555666777777 5799999999853
No 281
>PRK10586 putative oxidoreductase; Provisional
Probab=27.56 E-value=3.3e+02 Score=23.64 Aligned_cols=93 Identities=9% Similarity=0.084 Sum_probs=45.1
Q ss_pred HHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchh
Q 027277 11 IILRALGA-EVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 89 (225)
Q Consensus 11 ~~~~~~GA-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~ 89 (225)
+.++.+|. ++.++.+...++.......+..++. +.-+. .|+.... +.++- ++.++.....| +|+++|+|..
T Consensus 27 ~~~~~~g~~~~lvv~g~~~~~~~~~~~~~~l~~~-~~~~~-~~~g~~~----~~~v~-~l~~~~~~~~d-~iiavGGGs~ 98 (362)
T PRK10586 27 DFFTDEQLSRAVWIYGERAIAAAQPYLPPAFELP-GAKHI-LFRGHCS----ESDVA-QLAAASGDDRQ-VVIGVGGGAL 98 (362)
T ss_pred HHHHhcCCCeEEEEEChHHHHHHHHHHHHHHHHc-CCeEE-EeCCCCC----HHHHH-HHHHHhccCCC-EEEEecCcHH
Confidence 34577884 6666654333443333334444444 32221 2221111 22222 44444433456 5778888766
Q ss_pred HHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 90 VTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 90 ~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
+ =+++++... .+.+++.|-+..
T Consensus 99 i-D~aK~~a~~-~~~p~i~vPT~a 120 (362)
T PRK10586 99 L-DTAKALARR-LGLPFVAIPTIA 120 (362)
T ss_pred H-HHHHHHHhh-cCCCEEEEeCCc
Confidence 6 555655432 345677775443
No 282
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=27.55 E-value=1.2e+02 Score=23.85 Aligned_cols=75 Identities=20% Similarity=0.188 Sum_probs=44.3
Q ss_pred CCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHH
Q 027277 17 GAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRF 96 (225)
Q Consensus 17 GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~ 96 (225)
..+|+-++.. +++.+..++-+++. + + +|-.. ..| -++|.+.++. .||+||+. +|+.+-+|...
T Consensus 58 ~~~v~AIe~~---~~a~~~~~~N~~~f-g---~---~n~~v-v~g---~Ap~~L~~~~-~~daiFIG--Gg~~i~~ile~ 120 (187)
T COG2242 58 SGRVIAIERD---EEALELIERNAARF-G---V---DNLEV-VEG---DAPEALPDLP-SPDAIFIG--GGGNIEEILEA 120 (187)
T ss_pred CceEEEEecC---HHHHHHHHHHHHHh-C---C---CcEEE-Eec---cchHhhcCCC-CCCEEEEC--CCCCHHHHHHH
Confidence 3455555532 35555555555544 2 1 23333 334 3578888884 79999975 55888888887
Q ss_pred HHhh-CCCcEEEE
Q 027277 97 LKEK-NPNIKVYG 108 (225)
Q Consensus 97 ~k~~-~~~~~vig 108 (225)
+.+. .+.-||+.
T Consensus 121 ~~~~l~~ggrlV~ 133 (187)
T COG2242 121 AWERLKPGGRLVA 133 (187)
T ss_pred HHHHcCcCCeEEE
Confidence 7654 45445543
No 283
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.43 E-value=71 Score=24.24 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCC
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFE 53 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 53 (225)
+|.+-+..-..+.|.+++++.+.+....++ +-+.+|.||++|.+
T Consensus 91 iP~gd~~sL~~LaRqldvDILl~G~Th~f~---------Aye~eg~ffvnPGS 134 (183)
T KOG3325|consen 91 IPWGDPESLALLARQLDVDILLTGHTHKFE---------AYEHEGKFFVNPGS 134 (183)
T ss_pred ecCCCHHHHHHHHHhcCCcEEEeCCceeEE---------EEEeCCcEEeCCCc
Confidence 467766666666688999998888642221 11234789999874
No 284
>PRK12483 threonine dehydratase; Reviewed
Probab=27.40 E-value=4.9e+02 Score=23.95 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=23.9
Q ss_pred EEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 027277 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 116 (225)
Q Consensus 81 v~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~ 116 (225)
|+++++|-+..|++.+.+.++ .+.+.|.|...+.
T Consensus 88 VV~aSaGNha~gvA~aA~~lG--i~~~IvmP~~tp~ 121 (521)
T PRK12483 88 VITASAGNHAQGVALAAARLG--VKAVIVMPRTTPQ 121 (521)
T ss_pred EEEECCCHHHHHHHHHHHHhC--CCEEEEECCCCCH
Confidence 445567888888888777766 5666777877653
No 285
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=27.36 E-value=2.6e+02 Score=22.94 Aligned_cols=29 Identities=24% Similarity=0.134 Sum_probs=21.0
Q ss_pred HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 027277 12 ILRALGAEVYLADPAVGFEGFVKKGEEILNRT 43 (225)
Q Consensus 12 ~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~ 43 (225)
-|...||+|.-++-+ +...+.|+..+.+.
T Consensus 76 ~mAr~Ga~VtgiD~s---e~~I~~Ak~ha~e~ 104 (243)
T COG2227 76 PLARLGASVTGIDAS---EKPIEVAKLHALES 104 (243)
T ss_pred HHHHCCCeeEEecCC---hHHHHHHHHhhhhc
Confidence 456779999888853 46677777777765
No 286
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=27.25 E-value=99 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=31.2
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
=.|+.+.|.|-|.+.++.+++..+...+|.-||=-..
T Consensus 25 v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg 61 (191)
T PRK05986 25 LIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKG 61 (191)
T ss_pred EEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecC
Confidence 3788899999999999999999988889888864443
No 287
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=27.23 E-value=5.2e+02 Score=24.15 Aligned_cols=43 Identities=12% Similarity=0.228 Sum_probs=33.2
Q ss_pred HHHHhhC-CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEe
Q 027277 68 EIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 68 Ei~~Ql~-~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe 110 (225)
|++++.+ .+.|.++++++.=-.-.-+....|+.+|+.+|++-.
T Consensus 455 ~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 455 ELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred HHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 6677764 358999999988666556777888889999998753
No 288
>PRK07574 formate dehydrogenase; Provisional
Probab=27.22 E-value=2.6e+02 Score=24.58 Aligned_cols=94 Identities=10% Similarity=0.061 Sum_probs=52.4
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHH--------HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEE
Q 027277 9 RRIILRALGAEVYLADPAVGFEGF--------VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAF 80 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~i 80 (225)
-.++++.+|++|+.+++...-.+. .....++.++- +...++- |.+ ..=..-+..|.+++++ +..+
T Consensus 207 vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a-DvV~l~l---Plt-~~T~~li~~~~l~~mk--~ga~ 279 (385)
T PRK07574 207 VLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVC-DVVTIHC---PLH-PETEHLFDADVLSRMK--RGSY 279 (385)
T ss_pred HHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcC-CEEEEcC---CCC-HHHHHHhCHHHHhcCC--CCcE
Confidence 356678899999988864210110 01123444443 4554442 222 2223445678888884 6789
Q ss_pred EEecCcchhH--HHHHHHHHhhCCCcEEEEEeC
Q 027277 81 IAGIGTGGTV--TGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 81 v~~~G~Gg~~--aGi~~~~k~~~~~~~vigVe~ 111 (225)
++-++.|+.+ ..+..+++. ...+=.+.++
T Consensus 280 lIN~aRG~iVDe~AL~~AL~s--G~i~GAaLDV 310 (385)
T PRK07574 280 LVNTARGKIVDRDAVVRALES--GHLAGYAGDV 310 (385)
T ss_pred EEECCCCchhhHHHHHHHHHh--CCccEEEEec
Confidence 9999999887 445555543 2333344443
No 289
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=27.19 E-value=2e+02 Score=23.75 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=26.7
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCC
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQF 52 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 52 (225)
......|.+|.+|+.. ..+.+..++.+++- |.+|+++-
T Consensus 58 ~~~~~~~g~ILfVgTK---~~a~~~V~~~A~r~-g~~yV~~R 95 (252)
T COG0052 58 RRIAANGGKILFVGTK---KQAQEPVKEFAERT-GAYYVNGR 95 (252)
T ss_pred HHHHcCCCEEEEEech---HHHHHHHHHHHHHh-CCceecCc
Confidence 3444569999999853 46667777777776 67777643
No 290
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=26.89 E-value=3.2e+02 Score=21.60 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=37.0
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
+.+...|++|+.++.. .+...+...++ ++.+..+..-+. |... ......+..++.+++ +.+|.||..+|..
T Consensus 28 ~~l~~~G~~V~~~~r~--~~~~~~~~~~i-~~~~~~~~~~~~-D~~~-~~~~~~~~~~~~~~~-~~~d~li~~ag~~ 98 (255)
T PRK07523 28 EGLAQAGAEVILNGRD--PAKLAAAAESL-KGQGLSAHALAF-DVTD-HDAVRAAIDAFEAEI-GPIDILVNNAGMQ 98 (255)
T ss_pred HHHHHcCCEEEEEeCC--HHHHHHHHHHH-HhcCceEEEEEc-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCCC
Confidence 4455569999888753 12222222222 222122222222 2333 344555555666666 5799999999864
No 291
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=26.86 E-value=1.5e+02 Score=20.60 Aligned_cols=39 Identities=10% Similarity=0.208 Sum_probs=26.8
Q ss_pred HHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCC
Q 027277 178 AAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVEN 221 (225)
Q Consensus 178 laa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~ 221 (225)
...+.++.+. .+..+.|+|- |+|..+.+ +|.+...+..+
T Consensus 52 ~~~i~~i~~~--fP~~kfiLIG-Dsgq~Dpe--iY~~ia~~~P~ 90 (100)
T PF09949_consen 52 RDNIERILRD--FPERKFILIG-DSGQHDPE--IYAEIARRFPG 90 (100)
T ss_pred HHHHHHHHHH--CCCCcEEEEe-eCCCcCHH--HHHHHHHHCCC
Confidence 3344444443 5677888887 99999877 68877766654
No 292
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=26.83 E-value=2.2e+02 Score=22.69 Aligned_cols=55 Identities=25% Similarity=0.217 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCeecc---hHHHHHHHHHHHhhcCCCCC-CEEEEEecCCCCCCcCh
Q 027277 152 SEEAIETSKLLALKEGLLVGI---SSGAAAAAAIRVAKRPENAG-KLIVVIFPSAGERYLST 209 (225)
Q Consensus 152 d~e~~~a~~~l~~~eGi~~ep---ssgaalaa~~~~~~~~~~~~-~~vv~v~~~gG~~~~~~ 209 (225)
..+..+.....++.-|+-... .+|.+++..++.. . ..+ .+.|+|+|..||.==|-
T Consensus 7 ~~~~~~~~~~~~~~lg~~~~~LMEnAG~aVa~~i~~~--~-~~~~~~~v~vlcG~GnNGGDG 65 (203)
T COG0062 7 AAEMMAIDDLNAEALGLPLDILMENAGLAVARAILRE--Y-PLGRARRVLVLCGPGNNGGDG 65 (203)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH--c-CcccCCEEEEEECCCCccHHH
Confidence 344455555555544443322 3344444433321 1 111 44556666888865443
No 293
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=26.78 E-value=1.7e+02 Score=25.30 Aligned_cols=36 Identities=33% Similarity=0.531 Sum_probs=20.6
Q ss_pred ccEEEEecC-cchhHHH----HHHHHHhhCC-CcEEEEEeCC
Q 027277 77 VDAFIAGIG-TGGTVTG----AGRFLKEKNP-NIKVYGIEPS 112 (225)
Q Consensus 77 ~d~iv~~~G-~Gg~~aG----i~~~~k~~~~-~~~vigVe~~ 112 (225)
.|.+++.+| +|||=+| ++..+++.++ .+-.+.+-|.
T Consensus 98 ~d~~~i~aglGGGTGsG~~p~iae~lke~~~~~~~~iv~~P~ 139 (349)
T cd02202 98 ADAILVIAGLGGGTGSGGAPVLAKELKERYEEPVYALGVLPA 139 (349)
T ss_pred ccEEEEecccCCCccccHHHHHHHHHHHhCCccEEEEEEecC
Confidence 788888877 3455555 4455666665 2333444444
No 294
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=26.77 E-value=1.8e+02 Score=25.79 Aligned_cols=95 Identities=21% Similarity=0.223 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCEEEEeCCCCChH--HH--HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEe
Q 027277 8 ERRIILRALGAEVYLADPAVGFE--GF--VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAG 83 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~--~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~ 83 (225)
.-.++++.+|++|+.+++..... .. .....++.++- +...++- |.+ ..-+.-+..|.++++ ++.++++-
T Consensus 165 ~vA~~~~~fGm~V~~~d~~~~~~~~~~~~~~~l~ell~~s-DiVslh~---Plt-~~T~~li~~~~l~~m--k~ga~lIN 237 (409)
T PRK11790 165 QLSVLAESLGMRVYFYDIEDKLPLGNARQVGSLEELLAQS-DVVSLHV---PET-PSTKNMIGAEELALM--KPGAILIN 237 (409)
T ss_pred HHHHHHHHCCCEEEEECCCcccccCCceecCCHHHHHhhC-CEEEEcC---CCC-hHHhhccCHHHHhcC--CCCeEEEE
Confidence 34566789999999988632110 00 11234555554 5555542 333 333556677888988 47899999
Q ss_pred cCcchhH--HHHHHHHHhhCCCcEEEEEeC
Q 027277 84 IGTGGTV--TGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 84 ~G~Gg~~--aGi~~~~k~~~~~~~vigVe~ 111 (225)
++-|+.+ ..+..+++. ...+=.+.++
T Consensus 238 ~aRG~~vde~aL~~aL~~--g~i~gaalDV 265 (409)
T PRK11790 238 ASRGTVVDIDALADALKS--GHLAGAAIDV 265 (409)
T ss_pred CCCCcccCHHHHHHHHHc--CCceEEEEcC
Confidence 9999887 555666653 2344444443
No 295
>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes. Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....
Probab=26.77 E-value=1.1e+02 Score=20.71 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=27.4
Q ss_pred eecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHh
Q 027277 169 LVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHE 218 (225)
Q Consensus 169 ~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~ 218 (225)
+.+.+|-+.+.++++.+.+. ....++.+++ |+++.+..+|.+.+.+
T Consensus 2 IagGtGIaP~~s~l~~~~~~-~~~~~v~l~~---~~r~~~~~~~~~~l~~ 47 (109)
T PF00175_consen 2 IAGGTGIAPFLSMLRYLLER-NDNRKVTLFY---GARTPEDLLFRDELEA 47 (109)
T ss_dssp EEEGGGGHHHHHHHHHHHHH-TCTSEEEEEE---EESSGGGSTTHHHHHH
T ss_pred eecceeHHHHHHHHHHHHHh-CCCCCEEEEE---EEcccccccchhHHHH
Confidence 34446667777777766543 3456777776 4556666566655443
No 296
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=26.70 E-value=3.1e+02 Score=21.44 Aligned_cols=72 Identities=21% Similarity=0.171 Sum_probs=36.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.+.... .+...+...++........++ +. |... ......+..++.+++ +.+|+||..+|.
T Consensus 23 a~~l~~~g~~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~ 94 (247)
T PRK12935 23 TVALAQEGAKVVINYNSS-KEAAENLVNELGKEGHDVYAV-QA-DVSK-VEDANRLVEEAVNHF-GKVDILVNNAGI 94 (247)
T ss_pred HHHHHHcCCEEEEEcCCc-HHHHHHHHHHHHhcCCeEEEE-EC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 344556799998654321 122222223332221122223 22 2333 334444556777776 579999999886
No 297
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.58 E-value=3.2e+02 Score=21.43 Aligned_cols=73 Identities=15% Similarity=0.182 Sum_probs=37.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+..... +-+...+...++........++ +. +-.. ......+..++.+++ +.+|.||..+|.+
T Consensus 21 a~~l~~~g~~v~~~~~r-~~~~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 93 (250)
T PRK08063 21 ALRLAEEGYDIAVNYAR-SRKAAEETAEEIEALGRKALAV-KA-NVGD-VEKIKEMFAQIDEEF-GRLDVFVNNAASG 93 (250)
T ss_pred HHHHHHCCCEEEEEcCC-CHHHHHHHHHHHHhcCCeEEEE-Ec-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 45556679998764221 1122222223332222122222 22 2333 344455556777777 4799999998864
No 298
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=26.49 E-value=1.2e+02 Score=23.13 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=31.1
Q ss_pred HHHHHhhC-CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 67 PEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 67 ~Ei~~Ql~-~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
.|+.++.. ..++.||+..|.-+.+.|+..++- ...||||-+..
T Consensus 43 ~~~~~~a~~~g~~viIa~AG~aa~Lpgvva~~t----~~PVIgvP~~~ 86 (156)
T TIGR01162 43 LEYAKEAEERGIKVIIAGAGGAAHLPGMVAALT----PLPVIGVPVPS 86 (156)
T ss_pred HHHHHHHHHCCCeEEEEeCCccchhHHHHHhcc----CCCEEEecCCc
Confidence 35555542 247899999999999999988763 45699996644
No 299
>PRK07109 short chain dehydrogenase; Provisional
Probab=26.40 E-value=4e+02 Score=22.52 Aligned_cols=72 Identities=15% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... .+...+...++........++ +. |... ..-...+..++.+++ +.+|.+|..+|..
T Consensus 25 a~~la~~G~~Vvl~~R~--~~~l~~~~~~l~~~g~~~~~v-~~-Dv~d-~~~v~~~~~~~~~~~-g~iD~lInnAg~~ 96 (334)
T PRK07109 25 ARAFARRGAKVVLLARG--EEGLEALAAEIRAAGGEALAV-VA-DVAD-AEAVQAAADRAEEEL-GPIDTWVNNAMVT 96 (334)
T ss_pred HHHHHHCCCEEEEEECC--HHHHHHHHHHHHHcCCcEEEE-Ee-cCCC-HHHHHHHHHHHHHHC-CCCCEEEECCCcC
Confidence 34555679999888753 222222223332222122222 22 2223 233444556666777 5799999998864
No 300
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.36 E-value=1.8e+02 Score=23.06 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEEe
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGIE 110 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigVe 110 (225)
..||+|+++ +.....|+.+++++.+ .++.|++.+
T Consensus 177 ~~~~ai~~~--~d~~a~~~~~~l~~~g~~~p~~i~v~~~d 214 (270)
T cd06296 177 ERPTAIFAG--NDLMALGVYEAARERGLRIPEDLSVVGFD 214 (270)
T ss_pred CCCcEEEEc--CcHHHHHHHHHHHHhCCCCCCceEEEEEC
Confidence 347888866 4456668888888765 346777774
No 301
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=26.32 E-value=3.4e+02 Score=21.64 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=36.3
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
-.+.+...|++|+.++... +.. .++.++.+. ..++ +. |... .........++.++. +.+|.+|..+|.
T Consensus 22 ia~~l~~~G~~V~~~~r~~--~~~----~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-g~id~li~~ag~ 90 (263)
T PRK06200 22 LVERFLAEGARVAVLERSA--EKL----ASLRQRFGDHVLVV-EG-DVTS-YADNQRAVDQTVDAF-GKLDCFVGNAGI 90 (263)
T ss_pred HHHHHHHCCCEEEEEeCCH--HHH----HHHHHHhCCcceEE-Ec-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCC
Confidence 3455566799998887531 222 222222212 2222 22 2222 233444556777776 579999999885
No 302
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=26.21 E-value=1.5e+02 Score=23.45 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=22.7
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||. +..+..|+..++++.+. ++.|+|.+
T Consensus 175 ~~~ai~~~--~d~~a~g~~~~l~~~g~~~p~di~iig~d 211 (265)
T cd06285 175 PPTAIFAV--NDFAAIGVMGAARDRGLRVPDDVALVGYN 211 (265)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeec
Confidence 57888876 44466689999988653 45666664
No 303
>PRK12354 carbamate kinase; Reviewed
Probab=26.14 E-value=55 Score=27.82 Aligned_cols=54 Identities=9% Similarity=-0.035 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCeEEeCCCCCCCChHh----hHhhhHHHHHHhhCCCccEEEEecCcchhH
Q 027277 34 KKGEEILNRTPNGYILGQFENPANPEI----HYETTGPEIWNDSGGKVDAFIAGIGTGGTV 90 (225)
Q Consensus 34 ~~a~~~~~~~~~~~~~~~~~~~~~~~~----g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~ 90 (225)
+.|+++.+++ +|.+... .+.+..+. =...+-.+.++.+ -+-+.|++++|+||.-
T Consensus 130 ~~a~~~~~e~-g~~~~~d-g~g~rrVv~SP~P~~ive~~~I~~L-l~~g~ivIa~GGGGIP 187 (307)
T PRK12354 130 AEAERLAAEK-GWTIKPD-GDYFRRVVPSPRPKRIVEIRPIRWL-LEKGHLVICAGGGGIP 187 (307)
T ss_pred HHHHHHHHhc-CCEEeec-CCceEEEecCCCCcceeCHHHHHHH-HHCCCEEEEeCCCccC
Confidence 5677777776 6766654 11110000 0000112333333 1235678888888764
No 304
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=26.06 E-value=3.3e+02 Score=21.41 Aligned_cols=72 Identities=18% Similarity=0.145 Sum_probs=37.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|.+|+.+.... +...+...++........++. .|-.. ......+..++.++. +.+|.||..+|..
T Consensus 21 a~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~~--~Dl~~-~~~~~~~~~~~~~~~-~~~d~vi~~a~~~ 92 (258)
T PRK12429 21 ALALAKEGAKVVIADLND--EAAAAAAEALQKAGGKAIGVA--MDVTD-EEAINAGIDYAVETF-GGVDILVNNAGIQ 92 (258)
T ss_pred HHHHHHCCCeEEEEeCCH--HHHHHHHHHHHhcCCcEEEEE--cCCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 445556799998887532 222222333322221222222 12333 334444555666666 4699999988754
No 305
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=25.77 E-value=3.3e+02 Score=21.44 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=36.4
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
-...+...|++|+.+.... +...+...++.+......++ +. +... ...-.....++.++. +.+|.+|..+|..
T Consensus 23 la~~l~~~G~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~~-~~-Dl~~-~~~~~~~~~~~~~~~-~~~d~vi~~ag~~ 95 (262)
T PRK13394 23 IALELARAGAAVAIADLNQ--DGANAVADEINKAGGKAIGV-AM-DVTN-EDAVNAGIDKVAERF-GSVDILVSNAGIQ 95 (262)
T ss_pred HHHHHHHCCCeEEEEeCCh--HHHHHHHHHHHhcCceEEEE-EC-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCccC
Confidence 3455667899998887532 22222233332222122222 21 2222 222333444555555 4689999998863
No 306
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.73 E-value=3.3e+02 Score=21.40 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=37.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.... .+.......++........++ +. +-.. ..-...+..++.++. +.+|.||...|..
T Consensus 19 a~~L~~~g~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 91 (256)
T PRK12745 19 ARALAAAGFDLAINDRPD-DEELAATQQELRALGVEVIFF-PA-DVAD-LSAHEAMLDAAQAAW-GRIDCLVNNAGVG 91 (256)
T ss_pred HHHHHHCCCEEEEEecCc-hhHHHHHHHHHHhcCCceEEE-Ee-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCccC
Confidence 445566799999887532 112112222222222122232 22 2333 333455556676666 4699999998753
No 307
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=25.67 E-value=1.8e+02 Score=26.95 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=30.2
Q ss_pred hHHHHHHhhCCCccEEEEecCcchhHH--HHHHHHHhhCCCcEEEEEeCC
Q 027277 65 TGPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 65 ~~~Ei~~Ql~~~~d~iv~~~G~Gg~~a--Gi~~~~k~~~~~~~vigVe~~ 112 (225)
-+.|.++++ .+|++|+--|.|+.-. =++.++++.+.+++||||--.
T Consensus 157 ~i~~~l~~~--~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKT 204 (550)
T cd00765 157 QAEETAKKL--DLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKT 204 (550)
T ss_pred HHHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 345777776 4898887766654432 244566666777999999543
No 308
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=25.66 E-value=2.5e+02 Score=23.80 Aligned_cols=85 Identities=13% Similarity=0.080 Sum_probs=48.6
Q ss_pred HHHHHHHHcCCEEEEeCCCCC----hHHH--HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEE
Q 027277 8 ERRIILRALGAEVYLADPAVG----FEGF--VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFI 81 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~----~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv 81 (225)
.-.+.++.+|++|+.+++... .+.. .....++.++- +...++- |.+ ..-...+..+.+++++ +..++
T Consensus 150 ~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l~~a-Dvvv~~l---Plt-~~T~~li~~~~l~~mk--~ga~l 222 (312)
T PRK15469 150 KVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQT-RVLINLL---PNT-PETVGIINQQLLEQLP--DGAYL 222 (312)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHHhcC-CEEEECC---CCC-HHHHHHhHHHHHhcCC--CCcEE
Confidence 345667889999988875321 1110 11123334443 4444432 333 2334555678888884 67899
Q ss_pred EecCcchhH--HHHHHHHHh
Q 027277 82 AGIGTGGTV--TGAGRFLKE 99 (225)
Q Consensus 82 ~~~G~Gg~~--aGi~~~~k~ 99 (225)
+-+|-|+.+ ..+..++++
T Consensus 223 IN~aRG~vVde~aL~~aL~~ 242 (312)
T PRK15469 223 LNLARGVHVVEDDLLAALDS 242 (312)
T ss_pred EECCCccccCHHHHHHHHhc
Confidence 999999887 455555553
No 309
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=25.64 E-value=48 Score=22.19 Aligned_cols=31 Identities=26% Similarity=0.341 Sum_probs=21.4
Q ss_pred EecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcc
Q 027277 82 AGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 116 (225)
Q Consensus 82 ~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~ 116 (225)
+.+|+|.++.-+... .+..++++++++....
T Consensus 3 iGcG~G~~~~~l~~~----~~~~~~~~~D~s~~~l 33 (99)
T PF08242_consen 3 IGCGTGRLLRALLEE----LPDARYTGVDISPSML 33 (99)
T ss_dssp ESTTTS-TTTTHHHH----C-EEEEEEEESSSSTT
T ss_pred eCccChHHHHHHHHh----CCCCEEEEEECCHHHH
Confidence 567888777655443 3789999999988754
No 310
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=25.61 E-value=3.4e+02 Score=21.47 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=22.2
Q ss_pred HHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC---CcEEEEEe
Q 027277 68 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP---NIKVYGIE 110 (225)
Q Consensus 68 Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~---~~~vigVe 110 (225)
+++++. +.|++|+|.- ..+..|+..++++.+. ++.|+|.+
T Consensus 176 ~~l~~~-~~~~ai~~~~--d~~a~~~~~~l~~~g~~~~di~ivg~d 218 (272)
T cd06301 176 NWLSSG-GKIDAVVANN--DEMALGAIMALKAAGKSDKDVPVAGID 218 (272)
T ss_pred HHHHhC-CCCCEEEECC--CchHHHHHHHHHHcCCCCCCcEEEeeC
Confidence 444433 3577776642 2344477777776543 45666663
No 311
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=25.58 E-value=3.4e+02 Score=21.45 Aligned_cols=33 Identities=18% Similarity=0.299 Sum_probs=18.3
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+||++. +....|+..++++.+. ++.|+|+.
T Consensus 177 ~~~ai~~~~--d~~a~g~~~~l~~~g~~ip~di~v~g~d 213 (268)
T cd06270 177 PFTAVFCAN--DEMAAGAISALREHGISVPQDVSIIGFD 213 (268)
T ss_pred CCCEEEEcC--cHHHHHHHHHHHHcCCCCCCceeEEEec
Confidence 366666553 3345567777766542 34555553
No 312
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=25.58 E-value=2e+02 Score=20.40 Aligned_cols=47 Identities=21% Similarity=0.152 Sum_probs=29.3
Q ss_pred HHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCC-c-EEEEEeCCCCc
Q 027277 67 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-I-KVYGIEPSESA 115 (225)
Q Consensus 67 ~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~-~-~vigVe~~~~~ 115 (225)
.++++++. ..| .|+.+|+=||+.-+..++...... . --+|+=|.+..
T Consensus 41 ~~~~~~~~-~~d-~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GTg 89 (124)
T smart00046 41 LVIFRDLP-KFD-RVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGTG 89 (124)
T ss_pred HHHHhhcC-cCC-EEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCCh
Confidence 34455552 355 455688889999999988754322 1 24677777663
No 313
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=25.11 E-value=1.9e+02 Score=26.91 Aligned_cols=44 Identities=16% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCccEEEEecCcchhHH--HHHHHHHhhCCCcEEEEEeC
Q 027277 66 GPEIWNDSGGKVDAFIAGIGTGGTVT--GAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 66 ~~Ei~~Ql~~~~d~iv~~~G~Gg~~a--Gi~~~~k~~~~~~~vigVe~ 111 (225)
+.|.++++ .+|++|+--|.|+... =++.+|++.+.+++||||--
T Consensus 182 ~~~~l~~l--~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPK 227 (568)
T PLN02251 182 AEETATKL--DLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPK 227 (568)
T ss_pred HHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCc
Confidence 45666666 4899888766665432 34456666777899999943
No 314
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=25.06 E-value=3.8e+02 Score=21.86 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=33.5
Q ss_pred HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcc
Q 027277 13 LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 87 (225)
Q Consensus 13 ~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~G 87 (225)
....|-.|.++++.. +...+.+..+.+++ +.-.+..++.+.. ..- -.+|.+++. ..||.|+++.|.-
T Consensus 101 ~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~-~~e----~~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 101 AGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFT-PEQ----RQALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred HHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCC-HHH----HHHHHHHHHhcCCCEEEEECCCc
Confidence 345678888888542 22333334444555 4322211111111 111 123555553 3599999999874
No 315
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=24.76 E-value=2e+02 Score=26.68 Aligned_cols=45 Identities=11% Similarity=0.174 Sum_probs=30.2
Q ss_pred HHHHHHhhCCCccEEEEecCcchhH--HHHHHHHHhhCCCcEEEEEeCC
Q 027277 66 GPEIWNDSGGKVDAFIAGIGTGGTV--TGAGRFLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 66 ~~Ei~~Ql~~~~d~iv~~~G~Gg~~--aGi~~~~k~~~~~~~vigVe~~ 112 (225)
+.|.++++ .+|++|+--|.|+.- +=++.+|++.+.+++||||--.
T Consensus 153 ~~~~l~~~--~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkT 199 (539)
T TIGR02477 153 ALTTAKKL--KLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKT 199 (539)
T ss_pred HHHHHHHc--CCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 45667776 489888876666543 2344566666778999999544
No 316
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=24.69 E-value=2e+02 Score=23.83 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=21.8
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||. +..+..|+..++++.+. ++.|+|.+
T Consensus 236 ~p~ai~~~--~d~~A~g~~~al~~~g~~vP~dvsvvgfd 272 (329)
T TIGR01481 236 LPTAVFVA--SDEMAAGILNAAMDAGIKVPEDLEVITSN 272 (329)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 47887774 44466688888887653 45666664
No 317
>PRK06181 short chain dehydrogenase; Provisional
Probab=24.68 E-value=3.6e+02 Score=21.40 Aligned_cols=72 Identities=14% Similarity=0.142 Sum_probs=37.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|.+|+.+... .+...+...++.... ........ +... ......+..++.+++ +.+|.||.++|..
T Consensus 18 a~~l~~~g~~Vi~~~r~--~~~~~~~~~~l~~~~-~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 89 (263)
T PRK06181 18 AVRLARAGAQLVLAARN--ETRLASLAQELADHG-GEALVVPT-DVSD-AEACERLIEAAVARF-GGIDILVNNAGIT 89 (263)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhcC-CcEEEEEc-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCcc
Confidence 34455679999988753 222222333332222 22222121 2223 333444455666666 4699999998753
No 318
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=24.68 E-value=3.3e+02 Score=21.06 Aligned_cols=73 Identities=19% Similarity=0.100 Sum_probs=36.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+..... ........++........++. . +... ......+..++.+++ +.+|.||..+|..
T Consensus 22 ~~~l~~~G~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~-Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 94 (248)
T PRK05557 22 AERLAAQGANVVINYASSE-AGAEALVAEIGALGGKALAVQ-G-DVSD-AESVERAVDEAKAEF-GGVDILVNNAGIT 94 (248)
T ss_pred HHHHHHCCCEEEEEeCCch-hHHHHHHHHHHhcCCceEEEE-c-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCcC
Confidence 4445566999876654221 111122222322221233332 1 2233 233344455666666 4689999998753
No 319
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=24.64 E-value=2.5e+02 Score=19.80 Aligned_cols=43 Identities=19% Similarity=0.131 Sum_probs=26.0
Q ss_pred CCCCChHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhC
Q 027277 1 MPSTYSIERRIILRALGAEVYLADPA-VGFEGFVKKGEEILNRT 43 (225)
Q Consensus 1 vP~~~~~~k~~~~~~~GA~v~~~~~~-~~~~~~~~~a~~~~~~~ 43 (225)
||+.+=..-.+..+.+|+.+++-+-. +++.+..+..+++..+.
T Consensus 8 MP~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~ 51 (113)
T PF09673_consen 8 MPDASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKD 51 (113)
T ss_pred CCHHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 45555555555666677777765421 35666677777776654
No 320
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=24.59 E-value=2.7e+02 Score=19.94 Aligned_cols=70 Identities=10% Similarity=0.042 Sum_probs=35.7
Q ss_pred HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcch
Q 027277 13 LRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGG 88 (225)
Q Consensus 13 ~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg 88 (225)
....+.+++.=.+ .++.+++..+.+.+.+.-....+-..+.|.. ..-+-. +.++.| ...|.|+.|+-=||
T Consensus 30 ~~~~~~~~~~Q~g-~dLG~Rm~~a~~~~~~g~~~vvliGsD~P~l-~~~~l~---~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 30 WLPSGFSFFPQQG-GDLGERMANAFQQAARGYEPVVLIGSDCPDL-TPDDLE---QAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp HH-TTSEEEE--S-SSHHHHHHHHHHHHHTT-SEEEEE-SS-TT---HHHHH---HHHHHT-TT-SEEEEEBTTSS
T ss_pred ccCCCCEEeecCC-CCHHHHHHHHHHHHHcCCCcEEEEcCCCCCC-CHHHHH---HHHHHh-ccCCEEEeeccCCC
Confidence 3344555554443 5677888887776633223555555566766 333332 334445 23588999987665
No 321
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=24.58 E-value=2.7e+02 Score=21.75 Aligned_cols=65 Identities=14% Similarity=0.061 Sum_probs=39.6
Q ss_pred CeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 45 NGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 45 ~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
+..+.+.|-|...-......++.++.+.+.. .+|+|+ ++.++|..-|...+.+. +.+.+-+...+
T Consensus 18 ~~i~~~~~~~~~~~p~~l~~v~~~l~~~~~~~~~d~Vv-~~ea~Gi~la~~lA~~L---g~p~v~vRK~~ 83 (191)
T TIGR01744 18 GILKVDSFLNHQIDPKLMQEVGEEFARRFADDGITKIV-TIEASGIAPAIMTGLKL---GVPVVFARKKK 83 (191)
T ss_pred CEEEEehhhccccCHHHHHHHHHHHHHHhccCCCCEEE-EEccccHHHHHHHHHHH---CCCEEEEEeCC
Confidence 4666666654331134567778888888754 589774 56677777676655543 34555565543
No 322
>PLN02306 hydroxypyruvate reductase
Probab=24.41 E-value=3.1e+02 Score=24.14 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=52.2
Q ss_pred HHcCCEEEEeCCCCChH-HH---------------------HHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHH
Q 027277 14 RALGAEVYLADPAVGFE-GF---------------------VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWN 71 (225)
Q Consensus 14 ~~~GA~v~~~~~~~~~~-~~---------------------~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 71 (225)
+.+|++|+.+++....+ +. .....++.++- +...++- |.+ ..-+.-+..|.++
T Consensus 186 ~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~s-DiV~lh~---Plt-~~T~~lin~~~l~ 260 (386)
T PLN02306 186 EGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREA-DVISLHP---VLD-KTTYHLINKERLA 260 (386)
T ss_pred hcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhC-CEEEEeC---CCC-hhhhhhcCHHHHH
Confidence 48999999988532110 00 00123444443 4555532 233 2335667778889
Q ss_pred hhCCCccEEEEecCcchhH--HHHHHHHHhhCCCcEEEEEeCC
Q 027277 72 DSGGKVDAFIAGIGTGGTV--TGAGRFLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 72 Ql~~~~d~iv~~~G~Gg~~--aGi~~~~k~~~~~~~vigVe~~ 112 (225)
+| +++++++-+|-|+++ ..+..+++. ....-.+.++.
T Consensus 261 ~M--K~ga~lIN~aRG~lVDe~AL~~AL~s--g~i~gAaLDVf 299 (386)
T PLN02306 261 LM--KKEAVLVNASRGPVIDEVALVEHLKA--NPMFRVGLDVF 299 (386)
T ss_pred hC--CCCeEEEECCCccccCHHHHHHHHHh--CCeeEEEEeCC
Confidence 99 478999999999987 555566653 22344444443
No 323
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=24.39 E-value=4.5e+02 Score=23.32 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=19.5
Q ss_pred HhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 59 EIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 59 ~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.-..+..++.+++ +++|.+|-++|.+
T Consensus 115 ~E~v~~lie~I~e~~-G~IDiLVnSaA~~ 142 (398)
T PRK13656 115 DEIKQKVIELIKQDL-GQVDLVVYSLASP 142 (398)
T ss_pred HHHHHHHHHHHHHhc-CCCCEEEECCccC
Confidence 344455666777777 5789988888776
No 324
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=24.33 E-value=4.6e+02 Score=22.49 Aligned_cols=97 Identities=12% Similarity=0.095 Sum_probs=50.7
Q ss_pred HHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC--CeEEeC-CCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcchh
Q 027277 13 LRALGAEVYLADPAVGFEGFVKKGEEILNRTP--NGYILG-QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGT 89 (225)
Q Consensus 13 ~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~-~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~ 89 (225)
.+..|--=+.+.. ....+.+...++.++++ ....++ +.++.......-+..|.+.+++.=.+-| ++++|.|-|
T Consensus 50 Ar~~GiV~I~i~~--~~~~~~~Le~~L~~~fgL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gd--vigV~wGrT 125 (321)
T COG2390 50 AREEGIVKISINS--PVEGCLELEQQLKERFGLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGD--VIGVGWGRT 125 (321)
T ss_pred HHHCCeEEEEeCC--CCcchHHHHHHHHHhcCCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCC--EEEEeccHH
Confidence 3445543233332 34466677777777763 233333 2233222123344445555554422334 889999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 90 VTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 90 ~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
+.-+...+.... ...+..|+-.|.
T Consensus 126 v~a~~~~l~~~~-~~~~~vV~l~GG 149 (321)
T COG2390 126 LSAVVDNLPPAP-LRDVKVVQLTGG 149 (321)
T ss_pred HHHHHHhcCcCc-cCCeEEEECCCC
Confidence 998888775442 223444555544
No 325
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=24.20 E-value=2.1e+02 Score=24.69 Aligned_cols=55 Identities=27% Similarity=0.245 Sum_probs=28.4
Q ss_pred CCCCChHhhHhhhHHHHHHhhCCCccEEEEecC-cchhHHHH----HHHHHhhCCCcEEEEEe
Q 027277 53 ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG-TGGTVTGA----GRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 53 ~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G-~Gg~~aGi----~~~~k~~~~~~~vigVe 110 (225)
.||.........--.||.+.+ +..|.+|+.+| +|||-+|. ++.+|+++ .-+++|-
T Consensus 73 a~P~vG~~aAee~~~~I~~~l-~g~dmvfitaG~GGGTGtGaaPVvakiake~g--~ltvavv 132 (338)
T COG0206 73 ANPEVGRAAAEESIEEIEEAL-KGADMVFVTAGMGGGTGTGAAPVVAEIAKELG--ALTVAVV 132 (338)
T ss_pred CCcHHHHHHHHHHHHHHHHHh-ccCCeEEEEeeecCCccccccHHHHHHHHhcC--CcEEEEE
Confidence 345443333333444555666 45787888877 45555553 33445533 3445553
No 326
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.14 E-value=2e+02 Score=22.88 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=22.7
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
||+|||+ +.....|+..++++.+. ++.|++++
T Consensus 182 ~~ai~~~--~d~~a~g~~~~l~~~g~~ip~di~ii~~d 217 (273)
T cd06292 182 PTAIVAA--SDLMALGAIRAARRRGLRVPEDVSVVGYD 217 (273)
T ss_pred CCEEEEc--CcHHHHHHHHHHHHcCCCCCcceEEEeeC
Confidence 8888866 45566788888887653 46777774
No 327
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=24.12 E-value=2.1e+02 Score=23.04 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=24.1
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
-..+-+.||+|.+..-+...+ ..+..+++||+++..
T Consensus 58 ~~vLDlGcGtG~~~~~l~~~~--~~~~~~v~gvD~S~~ 93 (247)
T PRK15451 58 TQVYDLGCSLGAATLSVRRNI--HHDNCKIIAIDNSPA 93 (247)
T ss_pred CEEEEEcccCCHHHHHHHHhc--CCCCCeEEEEeCCHH
Confidence 346777888887654443322 247789999998764
No 328
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=24.08 E-value=3.3e+02 Score=20.71 Aligned_cols=40 Identities=18% Similarity=0.174 Sum_probs=24.1
Q ss_pred HHHHHHcCCEEEEeCCCC------------ChHHHHHHHHHHHHhCCCeEEeC
Q 027277 10 RIILRALGAEVYLADPAV------------GFEGFVKKGEEILNRTPNGYILG 50 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~------------~~~~~~~~a~~~~~~~~~~~~~~ 50 (225)
++.++..|++++++.+.. ......+..+++++++ +..+++
T Consensus 100 i~~~~~~~~~~il~tp~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~vD 151 (198)
T cd01821 100 IAEARAKGATPILVTPVTRRTFDEGGKVEDTLGDYPAAMRELAAEE-GVPLID 151 (198)
T ss_pred HHHHHHCCCeEEEECCccccccCCCCcccccchhHHHHHHHHHHHh-CCCEEe
Confidence 455677899988875321 1223345667777776 555555
No 329
>PRK12939 short chain dehydrogenase; Provisional
Probab=24.01 E-value=3.5e+02 Score=21.08 Aligned_cols=72 Identities=13% Similarity=-0.003 Sum_probs=37.1
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... .+...+...++.... ..+.+.+. |-.. ..-...+..++.++. +++|.||..+|..
T Consensus 24 a~~l~~~G~~v~~~~r~--~~~~~~~~~~~~~~~-~~~~~~~~-Dl~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 95 (250)
T PRK12939 24 AEALAEAGATVAFNDGL--AAEARELAAALEAAG-GRAHAIAA-DLAD-PASVQRFFDAAAAAL-GGLDGLVNNAGIT 95 (250)
T ss_pred HHHHHHcCCEEEEEeCC--HHHHHHHHHHHHhcC-CcEEEEEc-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 44556679999888642 222223333332222 11222222 2222 233344555666666 5799999999864
No 330
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=24.01 E-value=3.5e+02 Score=21.11 Aligned_cols=71 Identities=18% Similarity=0.123 Sum_probs=36.6
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
...+...|++|+.+... .+...+...++.+......++ +. |... ..--..+..++.+++ +.+|.+|...|.
T Consensus 20 a~~l~~~g~~v~~~~r~--~~~~~~~~~~~~~~~~~~~~~-~~-d~~~-~~~~~~~~~~~~~~~-~~~d~vi~~ag~ 90 (250)
T TIGR03206 20 CRRFAEEGAKVAVFDLN--REAAEKVAADIRAKGGNAQAF-AC-DITD-RDSVDTAVAAAEQAL-GPVDVLVNNAGW 90 (250)
T ss_pred HHHHHHCCCEEEEecCC--HHHHHHHHHHHHhcCCcEEEE-Ec-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 34455679999888743 222222222232222122222 22 2222 222333455777777 579999999874
No 331
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=23.88 E-value=4.4e+02 Score=22.60 Aligned_cols=95 Identities=19% Similarity=0.256 Sum_probs=46.1
Q ss_pred HHHHHcCCEEEEeCCCCChHH--HHHHHHHHHHhCCCeE-EeCCC-CCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 11 IILRALGAEVYLADPAVGFEG--FVKKGEEILNRTPNGY-ILGQF-ENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~-~~~~~-~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
+.++.+| ++.++... .+.. ..+......++.+-.+ ..+.+ .+|.. .. ..-+.++++.. ++| +|+++||
T Consensus 16 ~~l~~~g-r~lvVt~~-~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~--~~-v~~~~~~~~~~--~~D-~IIaiGG 87 (366)
T PF00465_consen 16 EELKRLG-RVLVVTDP-SLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTL--ED-VDEAAEQARKF--GAD-CIIAIGG 87 (366)
T ss_dssp HHHHCTT-EEEEEEEH-HHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BH--HH-HHHHHHHHHHT--TSS-EEEEEES
T ss_pred HHHHhcC-CEEEEECc-hHHhCccHHHHHHHHhhCceEEEEEecCCCCCcH--HH-HHHHHHHHHhc--CCC-EEEEcCC
Confidence 4467788 88766532 2322 3455554444442222 22211 23321 22 22233444433 477 6778988
Q ss_pred chhHHHHHHHHHhh--C----------------CCcEEEEEeCCCC
Q 027277 87 GGTVTGAGRFLKEK--N----------------PNIKVYGIEPSES 114 (225)
Q Consensus 87 Gg~~aGi~~~~k~~--~----------------~~~~vigVe~~~~ 114 (225)
|+.+ -+++++..+ + +..++|.|-+..+
T Consensus 88 GS~~-D~aK~va~~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt~g 132 (366)
T PF00465_consen 88 GSVM-DAAKAVALLLANPGDLRDLLGKGPPPTKPALPLIAIPTTAG 132 (366)
T ss_dssp HHHH-HHHHHHHHHHTSSSCGGGGGCECSCCSS--SEEEEEESSSS
T ss_pred CCcC-cHHHHHHhhccCCCcHHHHHhhccccccCCCcEEEeeCCcc
Confidence 8776 445554432 1 1268888866544
No 332
>PTZ00357 methyltransferase; Provisional
Probab=23.87 E-value=1.3e+02 Score=28.96 Aligned_cols=36 Identities=14% Similarity=0.290 Sum_probs=31.6
Q ss_pred EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
..|+.+|-|-++.-..++++..+-+++|++||-...
T Consensus 704 ImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPp 739 (1072)
T PTZ00357 704 LVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLP 739 (1072)
T ss_pred EEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcc
Confidence 577888999999999999999999999999997744
No 333
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=23.72 E-value=3.6e+02 Score=21.10 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=34.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+... +.+.......++........++ +. |... ..-...+..++.+++ +++|.+|..+|.+
T Consensus 19 a~~l~~~g~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~-Dl~~-~~~~~~~~~~~~~~~-~~id~li~~ag~~ 91 (248)
T PRK06947 19 AVLAAARGWSVGINYAR-DAAAAEETADAVRAAGGRACVV-AG-DVAN-EADVIAMFDAVQSAF-GRLDALVNNAGIV 91 (248)
T ss_pred HHHHHHCCCEEEEEeCC-CHHHHHHHHHHHHhcCCcEEEE-Ee-ccCC-HHHHHHHHHHHHHhc-CCCCEEEECCccC
Confidence 34455569998765421 1122222222222221122222 22 2222 222333445666666 5799999999854
No 334
>PRK05855 short chain dehydrogenase; Validated
Probab=23.70 E-value=5.4e+02 Score=23.14 Aligned_cols=72 Identities=17% Similarity=0.111 Sum_probs=37.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+..+ .+...+.+.++. +.+......+. +-.. ..-...+..++.++. +.+|.+|..+|.+
T Consensus 332 a~~l~~~G~~v~~~~r~--~~~~~~~~~~~~-~~~~~~~~~~~-Dv~~-~~~~~~~~~~~~~~~-g~id~lv~~Ag~~ 403 (582)
T PRK05855 332 ALAFAREGAEVVASDID--EAAAERTAELIR-AAGAVAHAYRV-DVSD-ADAMEAFAEWVRAEH-GVPDIVVNNAGIG 403 (582)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHH-hcCCeEEEEEc-CCCC-HHHHHHHHHHHHHhc-CCCcEEEECCccC
Confidence 34455678888888753 222223333332 22222222222 2223 233444556666666 5799999999864
No 335
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=23.67 E-value=1e+02 Score=23.08 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=34.5
Q ss_pred cCcCeEEEeCHHHHHHHHHHHHHhcCCeecchHHHHHHHHHHH
Q 027277 142 AMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRV 184 (225)
Q Consensus 142 ~~~~~~~~v~d~e~~~a~~~l~~~eGi~~epssgaalaa~~~~ 184 (225)
..++-.+.|.+.+.++.+|.++ .|+.+-|.+|--+|.-+.+
T Consensus 89 ~AvGlVVNV~t~~~L~~Lr~la--pgl~l~P~sgddLA~rL~l 129 (142)
T PF11072_consen 89 GAVGLVVNVATEAALQRLRQLA--PGLPLLPVSGDDLARRLGL 129 (142)
T ss_pred CCeEEEEecCCHHHHHHHHHHc--CCCeecCCCHHHHHHHhCC
Confidence 4567789999999999999997 6999999888888776654
No 336
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=23.56 E-value=4.5e+02 Score=22.28 Aligned_cols=32 Identities=25% Similarity=0.273 Sum_probs=20.3
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
||+|||.. --+..|+..++++.+- ++.|+|.+
T Consensus 238 ptAif~~n--D~~Alg~l~~~~~~g~~vP~disviGfD 273 (333)
T COG1609 238 PTAIFCAN--DLMALGALRALRELGLRVPEDLSVIGFD 273 (333)
T ss_pred CcEEEEcC--cHHHHHHHHHHHHcCCCCCCeeEEEEec
Confidence 78887764 4466777777776542 25566664
No 337
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=23.49 E-value=4.2e+02 Score=21.81 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=29.1
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
.||+||+.. .+....++.+.+++.+.+++++++......
T Consensus 191 ~~dav~~~~-~~~~a~~~i~~~~~~G~~~~~~~~~~~~~~ 229 (336)
T cd06326 191 RPQAVIMVG-AYKAAAAFIRALRKAGGGAQFYNLSFVGAD 229 (336)
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHhcCCCCcEEEEeccCHH
Confidence 489888875 334567889999998888898888665543
No 338
>PRK06114 short chain dehydrogenase; Provisional
Probab=23.46 E-value=3.8e+02 Score=21.23 Aligned_cols=73 Identities=16% Similarity=0.194 Sum_probs=37.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+..... +...+...++........++ +. +... ......+..++.+++ +.+|.+|...|..
T Consensus 25 a~~l~~~G~~v~~~~r~~~-~~~~~~~~~l~~~~~~~~~~-~~-D~~~-~~~i~~~~~~~~~~~-g~id~li~~ag~~ 97 (254)
T PRK06114 25 AIGLAQAGADVALFDLRTD-DGLAETAEHIEAAGRRAIQI-AA-DVTS-KADLRAAVARTEAEL-GALTLAVNAAGIA 97 (254)
T ss_pred HHHHHHCCCEEEEEeCCcc-hHHHHHHHHHHhcCCceEEE-Ec-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 4455667999988875321 11222233333322122222 11 2222 233344455666666 5799999998854
No 339
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=23.36 E-value=90 Score=25.63 Aligned_cols=35 Identities=37% Similarity=0.486 Sum_probs=21.5
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.|+||+..|.||.... ..|.+ .++.+|..+|.-..
T Consensus 1 yD~iIVGsG~~G~v~A--~rLs~-~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVA--SRLSE-AGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHH--HHHTT-STTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHH--HHHhh-CCCCcEEEEEcccc
Confidence 4899999888776532 23332 34578999987554
No 340
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=23.25 E-value=3.7e+02 Score=24.03 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=7.9
Q ss_pred CCCChHHHHHHHHHcC
Q 027277 2 PSTYSIERRIILRALG 17 (225)
Q Consensus 2 P~~~~~~k~~~~~~~G 17 (225)
|.....+.+++++.++
T Consensus 201 P~RIT~ell~~Lk~~~ 216 (417)
T TIGR03820 201 PQRITDELVAILKKHH 216 (417)
T ss_pred ccccCHHHHHHHHhcC
Confidence 3334445555555555
No 341
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=23.15 E-value=3.9e+02 Score=22.12 Aligned_cols=75 Identities=12% Similarity=-0.013 Sum_probs=36.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCC-CccEEEEecCcch
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGG 88 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G~Gg 88 (225)
+..++..|.++.+... ..-.++.+.+++.+++..+...+-..+ .. .+ .+...+++.-.. .+---++|+|||-
T Consensus 20 ~~~l~~~g~~~~v~~t-~~~~~a~~~a~~~~~~~~d~vv~~GGD-GT---i~--ev~ngl~~~~~~~~~~lgiiP~GTgN 92 (293)
T TIGR03702 20 VGDLRDEGIQLHVRVT-WEKGDAQRYVAEALALGVSTVIAGGGD-GT---LR--EVATALAQIRDDAAPALGLLPLGTAN 92 (293)
T ss_pred HHHHHHCCCeEEEEEe-cCCCCHHHHHHHHHHcCCCEEEEEcCC-hH---HH--HHHHHHHhhCCCCCCcEEEEcCCchh
Confidence 4457778887644322 112356667777654433444443332 11 11 111222221111 2347899999997
Q ss_pred hHH
Q 027277 89 TVT 91 (225)
Q Consensus 89 ~~a 91 (225)
-+|
T Consensus 93 dfA 95 (293)
T TIGR03702 93 DFA 95 (293)
T ss_pred HHH
Confidence 764
No 342
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=23.11 E-value=4.2e+02 Score=21.62 Aligned_cols=32 Identities=22% Similarity=0.380 Sum_probs=18.1
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGI 109 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigV 109 (225)
.|++|++.. ..+..|+..++++.+. ++.|+|+
T Consensus 185 ~~~ai~~~~--D~~A~g~~~al~~~g~~~dv~vvG~ 218 (298)
T cd06302 185 DLKGIIGPT--SVGIPGAARAVEEAGLKGKVAVTGL 218 (298)
T ss_pred CceEEEECC--CcchhHHHHHHHhcCCCCCEEEEEe
Confidence 466666642 3455566777766543 4555555
No 343
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=23.08 E-value=1.9e+02 Score=23.01 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=17.3
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC----CCcEEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN----PNIKVYGI 109 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~----~~~~vigV 109 (225)
.||+|||+ +..+..|+..++++.+ .++.|+|.
T Consensus 183 ~~~av~~~--~d~~a~g~~~al~~~g~~~p~dv~vvg~ 218 (273)
T cd01541 183 RPTAIVCY--NDEIALRVIDLLKELGLKIPEDISVVGF 218 (273)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCCcEEEEEc
Confidence 36666664 2334456666666653 23455555
No 344
>PRK07201 short chain dehydrogenase; Provisional
Probab=23.04 E-value=6.1e+02 Score=23.51 Aligned_cols=72 Identities=19% Similarity=0.238 Sum_probs=37.8
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
...+...|++|+.+... -+...+...++........++ +. |-.. ......+..++.++. +.+|.+|..+|.+
T Consensus 388 a~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~-~~-Dv~~-~~~~~~~~~~~~~~~-g~id~li~~Ag~~ 459 (657)
T PRK07201 388 AIKVAEAGATVFLVARN--GEALDELVAEIRAKGGTAHAY-TC-DLTD-SAAVDHTVKDILAEH-GHVDYLVNNAGRS 459 (657)
T ss_pred HHHHHHCCCEEEEEECC--HHHHHHHHHHHHhcCCcEEEE-Ee-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCCCC
Confidence 34455668998888753 222223333332222122222 22 2333 333444555666666 5799999999854
No 345
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=22.97 E-value=3.8e+02 Score=21.16 Aligned_cols=70 Identities=17% Similarity=0.156 Sum_probs=36.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.++... ...+...++........++ +. |... ......+..++.+++ +.+|.+|..+|.
T Consensus 25 a~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~lv~nAg~ 94 (260)
T PRK12823 25 ALRAAAEGARVVLVDRSE---LVHEVAAELRAAGGEALAL-TA-DLET-YAGAQAAMAAAVEAF-GRIDVLINNVGG 94 (260)
T ss_pred HHHHHHCCCEEEEEeCch---HHHHHHHHHHhcCCeEEEE-EE-eCCC-HHHHHHHHHHHHHHc-CCCeEEEECCcc
Confidence 344556799999887532 2222333333222122222 22 2222 233445556777766 579999998874
No 346
>PRK08628 short chain dehydrogenase; Provisional
Probab=22.95 E-value=3.8e+02 Score=21.14 Aligned_cols=71 Identities=14% Similarity=0.183 Sum_probs=38.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.... +..+...++.+......++ +. |-.. ......+..++.++. +.+|.||..+|..
T Consensus 24 a~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~vi~~ag~~ 94 (258)
T PRK08628 24 SLRLAEEGAIPVIFGRSA---PDDEFAEELRALQPRAEFV-QV-DLTD-DAQCRDAVEQTVAKF-GRIDGLVNNAGVN 94 (258)
T ss_pred HHHHHHcCCcEEEEcCCh---hhHHHHHHHHhcCCceEEE-Ec-cCCC-HHHHHHHHHHHHHhc-CCCCEEEECCccc
Confidence 344555799988877532 1123333443332222222 22 2333 334455556777776 5799999999853
No 347
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=22.95 E-value=4.4e+02 Score=21.88 Aligned_cols=77 Identities=16% Similarity=0.141 Sum_probs=45.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 7 IERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 7 ~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+-.+.+-..|.+|+++.++ .+...+.+.++..+++....+.+.| -.. ...-..+-.|+.++. ..+|.+|=.+|-
T Consensus 20 ~~~A~~lA~~g~~liLvaR~--~~kL~~la~~l~~~~~v~v~vi~~D-Ls~-~~~~~~l~~~l~~~~-~~IdvLVNNAG~ 94 (265)
T COG0300 20 AELAKQLARRGYNLILVARR--EDKLEALAKELEDKTGVEVEVIPAD-LSD-PEALERLEDELKERG-GPIDVLVNNAGF 94 (265)
T ss_pred HHHHHHHHHCCCEEEEEeCc--HHHHHHHHHHHHHhhCceEEEEECc-CCC-hhHHHHHHHHHHhcC-CcccEEEECCCc
Confidence 34456677789999999864 2334455566665553333344433 111 122344445665553 469999999998
Q ss_pred ch
Q 027277 87 GG 88 (225)
Q Consensus 87 Gg 88 (225)
|.
T Consensus 95 g~ 96 (265)
T COG0300 95 GT 96 (265)
T ss_pred CC
Confidence 73
No 348
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=22.92 E-value=3.9e+02 Score=21.25 Aligned_cols=73 Identities=15% Similarity=0.055 Sum_probs=37.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
...+...|++|+.+... +.+.....+.++..+.+.....-+.+ -.. ......+..++.++. +++|++|..+|.
T Consensus 25 a~~l~~~G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D-~~~-~~~~~~~~~~~~~~~-g~id~lv~nAg~ 97 (260)
T PRK08416 25 VYEFAQSGVNIAFTYNS-NVEEANKIAEDLEQKYGIKAKAYPLN-ILE-PETYKELFKKIDEDF-DRVDFFISNAII 97 (260)
T ss_pred HHHHHHCCCEEEEEcCC-CHHHHHHHHHHHHHhcCCceEEEEcC-CCC-HHHHHHHHHHHHHhc-CCccEEEECccc
Confidence 34455679999887532 22223333334433322222222222 222 233455556776666 579999988863
No 349
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=22.90 E-value=1.4e+02 Score=25.47 Aligned_cols=52 Identities=21% Similarity=0.235 Sum_probs=30.1
Q ss_pred hhHhhhHHHHHHhhCCCccEEE--EecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 60 IHYETTGPEIWNDSGGKVDAFI--AGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 60 ~g~~t~~~Ei~~Ql~~~~d~iv--~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
.|+-.+..|+++-+..+++-++ |..|+||....|... .++.+|+|++-....
T Consensus 3 ~H~PVll~Evl~~L~~~~~g~~vD~T~G~GGHS~aiL~~----~~~~~li~~DrD~~a 56 (310)
T PF01795_consen 3 YHIPVLLKEVLEALNPKPGGIYVDCTFGGGGHSKAILEK----LPNGRLIGIDRDPEA 56 (310)
T ss_dssp S---TTHHHHHHHHT--TT-EEEETT-TTSHHHHHHHHT-----TT-EEEEEES-HHH
T ss_pred ceecccHHHHHHhhCcCCCceEEeecCCcHHHHHHHHHh----CCCCeEEEecCCHHH
Confidence 3667778899999876666444 567888887665433 345899999876543
No 350
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=22.87 E-value=3.1e+02 Score=21.39 Aligned_cols=65 Identities=12% Similarity=0.046 Sum_probs=37.8
Q ss_pred CCeEEeCCCCC-CCChHhhHhhhHHHHHHhhCC-CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 44 PNGYILGQFEN-PANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 44 ~~~~~~~~~~~-~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
++..|++.+-| +.+ -.-...++.++++++.. .+|.|+++. ++|..-|...+.+. +..++-+...+
T Consensus 17 ~~~~~~~~~~~~~~~-P~~l~~i~~~la~~~~~~~~D~Ivg~e-~~GiplA~~lA~~L---g~p~v~vRK~~ 83 (189)
T PRK09219 17 GNILKVDSFLNHQVD-PKLMNEIGKEFARRFKDEGITKILTIE-ASGIAPAVMAALAL---GVPVVFAKKKK 83 (189)
T ss_pred CCEEEEhhhhccccC-HHHHHHHHHHHHHHhccCCCCEEEEEc-cccHHHHHHHHHHH---CCCEEEEEECC
Confidence 46777776643 333 34566778788888754 489876654 55555554444432 24555565443
No 351
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=22.74 E-value=1.8e+02 Score=22.68 Aligned_cols=38 Identities=5% Similarity=-0.081 Sum_probs=32.1
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.=+|++.-|=|-|.|.+..+++..+..-||+-||=-..
T Consensus 23 li~VYtGdGKGKTTAAlGlalRAaG~G~rV~iiQFlKg 60 (178)
T PRK07414 23 LVQVFTSSQRNFFTSVMAQALRIAGQGTPVLIVQFLKG 60 (178)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHhcCCCEEEEEEEecC
Confidence 34788888889999999999999999999999964443
No 352
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=22.60 E-value=2.6e+02 Score=19.07 Aligned_cols=83 Identities=19% Similarity=0.242 Sum_probs=50.6
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhC-CCccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSG-GKVDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~-~~~d~iv~~~G~G 87 (225)
-.+.++..+-+|+.++.. .+ .+.++.++ +..++. .++.. .+.+++.+ .+.+.+++..+.=
T Consensus 13 i~~~L~~~~~~vvvid~d---~~---~~~~~~~~--~~~~i~--gd~~~---------~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 13 IAEQLKEGGIDVVVIDRD---PE---RVEELREE--GVEVIY--GDATD---------PEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp HHHHHHHTTSEEEEEESS---HH---HHHHHHHT--TSEEEE--S-TTS---------HHHHHHTTGGCESEEEEESSSH
T ss_pred HHHHHHhCCCEEEEEECC---cH---HHHHHHhc--cccccc--ccchh---------hhHHhhcCccccCEEEEccCCH
Confidence 345666666689888842 12 23333333 333332 23333 24555553 3578999998876
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEe
Q 027277 88 GTVTGAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 88 g~~aGi~~~~k~~~~~~~vigVe 110 (225)
..-.=++..+|++++..+|++.-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEE
Confidence 66666777889999999988753
No 353
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.56 E-value=2.3e+02 Score=22.52 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=8.6
Q ss_pred HHHHHHcCCEEEEeC
Q 027277 10 RIILRALGAEVYLAD 24 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~ 24 (225)
++.++..|.-++.++
T Consensus 73 ~~~l~~~~ipvV~~~ 87 (268)
T cd06277 73 IKEIKELGIPFVLVD 87 (268)
T ss_pred HHHHhhcCCCEEEEc
Confidence 445555566666655
No 354
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=22.53 E-value=1e+02 Score=24.76 Aligned_cols=51 Identities=20% Similarity=0.080 Sum_probs=33.7
Q ss_pred HHHHHHhhC-CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCcccc
Q 027277 66 GPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN 118 (225)
Q Consensus 66 ~~Ei~~Ql~-~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~~~~ 118 (225)
-+||.+++. ....+|++|++.|. .|+-..++..-..--+-.+-|.-...+.
T Consensus 65 ~~~l~~~~~e~g~kavIvp~~~~~--~g~~~~lk~~~e~~gi~~~~P~~~CsL~ 116 (217)
T PF02593_consen 65 TYELPEIAKEAGVKAVIVPSESPK--PGLRRQLKKQLEEFGIEVEFPKPFCSLE 116 (217)
T ss_pred HHHHHHHHHHcCCCEEEEecCCCc--cchHHHHHHHHHhcCceeecCccccccC
Confidence 456766664 35889999999998 7888888876443333344455444443
No 355
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=22.50 E-value=2.6e+02 Score=23.58 Aligned_cols=36 Identities=28% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCccEEEEecC-cchhHHHHHH----HHHhhCCCcEEEEEeCC
Q 027277 75 GKVDAFIAGIG-TGGTVTGAGR----FLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 75 ~~~d~iv~~~G-~Gg~~aGi~~----~~k~~~~~~~vigVe~~ 112 (225)
..-|.||+.+| +|||=+|.+- .+|+.+. .+++|-|.
T Consensus 83 e~~D~v~i~aglGGGTGSG~ap~ia~~~ke~~~--~~~~vvt~ 123 (303)
T cd02191 83 VHVDMVFITAGLGGGTGTGGAPVVAEHLKRIGT--LTVAVVTL 123 (303)
T ss_pred cCCCEEEEEeccCCccchhHHHHHHHHHHHhCC--CEEEEEeC
Confidence 34788888877 4455566554 4455555 35555443
No 356
>PRK10423 transcriptional repressor RbsR; Provisional
Probab=22.38 E-value=2.5e+02 Score=23.19 Aligned_cols=33 Identities=21% Similarity=0.339 Sum_probs=21.3
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||+ +-.+..|+..++++.+. ++.|+|.+
T Consensus 235 ~~~ai~~~--~d~~A~g~~~~l~~~g~~vP~dvsvigfd 271 (327)
T PRK10423 235 RPQAVFTG--NDAMAVGVYQALYQAGLSVPQDIAVIGYD 271 (327)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 47887775 34455688888877653 45666663
No 357
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=22.34 E-value=2.9e+02 Score=22.28 Aligned_cols=50 Identities=18% Similarity=0.298 Sum_probs=30.5
Q ss_pred hHhhhHHHHHHhhCCCc--cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 61 HYETTGPEIWNDSGGKV--DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 61 g~~t~~~Ei~~Ql~~~~--d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
++......+++.+.... ..+=+.||+|.+. ..+....|..+|+|++++..
T Consensus 13 ~~~~~~~~ll~~l~~~~~~~vLDlGcG~G~~~----~~l~~~~p~~~v~gvD~s~~ 64 (255)
T PRK14103 13 HRGRPFYDLLARVGAERARRVVDLGCGPGNLT----RYLARRWPGAVIEALDSSPE 64 (255)
T ss_pred HhhCHHHHHHHhCCCCCCCEEEEEcCCCCHHH----HHHHHHCCCCEEEEEECCHH
Confidence 44445567777764332 3455666666543 34555557789999998654
No 358
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=22.32 E-value=2.2e+02 Score=22.52 Aligned_cols=31 Identities=26% Similarity=0.310 Sum_probs=18.4
Q ss_pred EEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 80 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 80 iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
+=.++|||-+ |++.++ ++ .-+|+||++....
T Consensus 50 ~DlG~GTG~L--a~ga~~--lG-a~~V~~vdiD~~a 80 (198)
T COG2263 50 LDLGAGTGIL--AIGAAL--LG-ASRVLAVDIDPEA 80 (198)
T ss_pred EEcCCCcCHH--HHHHHh--cC-CcEEEEEecCHHH
Confidence 3345666655 443333 33 3689999987754
No 359
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=22.32 E-value=2.3e+02 Score=21.64 Aligned_cols=39 Identities=23% Similarity=0.137 Sum_probs=26.9
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
+++|++++..|-|- ++-+...+++.+..+-++|+++..+
T Consensus 104 ~~iD~~vLvSgD~D-F~~Lv~~lre~G~~V~v~g~~~~ts 142 (160)
T TIGR00288 104 PNIDAVALVTRDAD-FLPVINKAKENGKETIVIGAEPGFS 142 (160)
T ss_pred CCCCEEEEEeccHh-HHHHHHHHHHCCCEEEEEeCCCCCh
Confidence 56899999988754 5578888888765555555544333
No 360
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=22.29 E-value=4.1e+02 Score=21.24 Aligned_cols=75 Identities=17% Similarity=0.175 Sum_probs=35.5
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eE-EeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPN-GY-ILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+-..|++|+.+... +.+...+...++....++ .. +.-...++.........+..++.+.+ +.+|.||..+|.
T Consensus 18 a~~l~~~G~~V~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~~~~~~~~~~~~~~~~~-g~iD~lv~nAG~ 94 (267)
T TIGR02685 18 AVALHQEGYRVVLHYHR-SAAAASTLAAELNARRPNSAVTCQADLSNSATLFSRCEAIIDACFRAF-GRCDVLVNNASA 94 (267)
T ss_pred HHHHHhCCCeEEEEcCC-cHHHHHHHHHHHHhccCCceEEEEccCCCchhhHHHHHHHHHHHHHcc-CCceEEEECCcc
Confidence 44555679999887532 122333333334332222 22 22122233221112233334444555 469999999885
No 361
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=22.29 E-value=1.1e+02 Score=25.50 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=26.7
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
++..+++..|++||+-...+.++.. .++|+|+..-.-
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~--~~pilgin~G~l 90 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARL--DIPVLGINLGHL 90 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccC--CCCEEEEeCCCc
Confidence 3456778889999988877776543 378999976543
No 362
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.28 E-value=3.9e+02 Score=20.92 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=20.6
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhC-----CCcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKN-----PNIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~-----~~~~vigVe 110 (225)
+||+|++. ++.+..|+..++++.+ .++.|++.+
T Consensus 174 ~~~~i~~~--~~~~a~~~~~~l~~~~~~~~p~di~i~~~d 211 (266)
T cd06278 174 RPDAIFCA--NDLLAIGVMDAARQEGGLRVPEDVSVIGFD 211 (266)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHhcCCCCccceEEEEeC
Confidence 47877776 3445567788887642 245666664
No 363
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=22.25 E-value=1.9e+02 Score=23.05 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=18.1
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeC
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~ 111 (225)
||+|||+- -.+..|+..++++++ +.|+|.+-
T Consensus 180 ~~ai~~~~--d~~A~gv~~al~~~g--v~vigfD~ 210 (260)
T cd06304 180 ADVIFAAA--GGTGPGVIQAAKEAG--VYAIGVDS 210 (260)
T ss_pred CCEEEEcC--CCCchHHHHHHHHcC--CEEEeecC
Confidence 56665542 234446777777666 66666643
No 364
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=22.23 E-value=1.2e+02 Score=26.92 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=19.9
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
|.||+..|.+|..|.+..+ ....+|+.||+...
T Consensus 1 DVVVvGgG~aG~~AAi~AA----r~G~~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAA----RAGAKVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHH----HTTS-EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHH----HCCCEEEEEECCcc
Confidence 6788877777776665543 33568999997765
No 365
>PRK04457 spermidine synthase; Provisional
Probab=22.03 E-value=2.6e+02 Score=22.95 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=21.6
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
..+.+.+|+|.+. ..+....|..+|++||-...
T Consensus 69 ~vL~IG~G~G~l~----~~l~~~~p~~~v~~VEidp~ 101 (262)
T PRK04457 69 HILQIGLGGGSLA----KFIYTYLPDTRQTAVEINPQ 101 (262)
T ss_pred EEEEECCCHhHHH----HHHHHhCCCCeEEEEECCHH
Confidence 4666666665543 34444567889999998654
No 366
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=22.01 E-value=1e+02 Score=26.85 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=20.9
Q ss_pred cEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 78 d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
|.||+..|.+|+.|.+.. .....+|+.||....
T Consensus 1 DVvVIG~G~AGl~AA~~A----ae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEA----AEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHH----HHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHH----hhhcCeEEEEEeecc
Confidence 778888777777665533 234458999987665
No 367
>PRK05599 hypothetical protein; Provisional
Probab=21.94 E-value=4.1e+02 Score=21.05 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=35.1
Q ss_pred cCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 16 LGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 16 ~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
-|++|+.+.+. .+...+.+.++.+..+.....-+.+ -.. ......+..++.++. +++|.+|..+|..
T Consensus 22 ~g~~Vil~~r~--~~~~~~~~~~l~~~~~~~~~~~~~D-v~d-~~~v~~~~~~~~~~~-g~id~lv~nag~~ 88 (246)
T PRK05599 22 HGEDVVLAARR--PEAAQGLASDLRQRGATSVHVLSFD-AQD-LDTHRELVKQTQELA-GEISLAVVAFGIL 88 (246)
T ss_pred CCCEEEEEeCC--HHHHHHHHHHHHhccCCceEEEEcc-cCC-HHHHHHHHHHHHHhc-CCCCEEEEecCcC
Confidence 39999998753 2333333344433221212222222 222 233444555666666 5799999988753
No 368
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=21.84 E-value=1.1e+02 Score=24.42 Aligned_cols=23 Identities=26% Similarity=0.445 Sum_probs=12.4
Q ss_pred hcCCeecc--hHHHHHHHHHHHhhc
Q 027277 165 KEGLLVGI--SSGAAAAAAIRVAKR 187 (225)
Q Consensus 165 ~eGi~~ep--ssgaalaa~~~~~~~ 187 (225)
+.=+++|| ++|.++..+++..++
T Consensus 125 ~~viv~DPMLATG~s~i~ai~~L~~ 149 (210)
T COG0035 125 RTVIVLDPMLATGGSAIAAIDLLKK 149 (210)
T ss_pred CeEEEECchhhccHhHHHHHHHHHH
Confidence 33456677 555555555555544
No 369
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.82 E-value=4.2e+02 Score=21.22 Aligned_cols=72 Identities=13% Similarity=0.085 Sum_probs=39.7
Q ss_pred HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 9 RRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
-.+.+-..|++|+.+.... ...+...++.++.+...+ -+. |... ......+..++.++. +.+|.+|..+|..
T Consensus 24 ~a~~l~~~G~~v~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~-Dv~d-~~~v~~~~~~~~~~~-g~iD~lvnnAG~~ 95 (260)
T PRK06997 24 IAKACKREGAELAFTYVGD---RFKDRITEFAAEFGSDLV-FPC-DVAS-DEQIDALFASLGQHW-DGLDGLVHSIGFA 95 (260)
T ss_pred HHHHHHHCCCeEEEEccch---HHHHHHHHHHHhcCCcce-eec-cCCC-HHHHHHHHHHHHHHh-CCCcEEEEccccC
Confidence 3445556799998875321 112223334333322221 122 3333 345566666777777 5799999998864
No 370
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.80 E-value=4e+02 Score=20.87 Aligned_cols=54 Identities=19% Similarity=0.056 Sum_probs=36.2
Q ss_pred HhhHhhhHHHHHHhhCCCccEEEEecCc----chhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 59 EIHYETTGPEIWNDSGGKVDAFIAGIGT----GGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 59 ~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~----Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
...|.....+++++.+ ||.|+++... |..+++...+.-....-..++.++.++.
T Consensus 93 ~e~~a~al~~~i~~~~--p~lVL~~~t~~~~~grdlaprlAarLga~lvsdv~~l~~~~~ 150 (202)
T cd01714 93 TLATAKALAAAIKKIG--VDLILTGKQSIDGDTGQVGPLLAELLGWPQITYVSKIEIEGG 150 (202)
T ss_pred hHHHHHHHHHHHHHhC--CCEEEEcCCcccCCcCcHHHHHHHHhCCCccceEEEEEEeCC
Confidence 4677777778888763 8999999665 6677666555444344456777765543
No 371
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=21.78 E-value=1.8e+02 Score=23.38 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=18.8
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEe
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 110 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe 110 (225)
||+|++. +..+..|+..++++.+ +.|+|..
T Consensus 184 pdaI~~~--nd~~A~gv~~al~~~g--isIvGfD 213 (265)
T cd06354 184 ADVIFAA--AGGTGNGVFQAAKEAG--VYAIGVD 213 (265)
T ss_pred CcEEEEC--CCCCchHHHHHHHhcC--CeEEEec
Confidence 6766655 3345557777777766 6666664
No 372
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=21.78 E-value=2.5e+02 Score=22.55 Aligned_cols=50 Identities=18% Similarity=0.277 Sum_probs=31.7
Q ss_pred hHhhhHHHHHHhhCCC--ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 61 HYETTGPEIWNDSGGK--VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 61 g~~t~~~Ei~~Ql~~~--~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.+...+.++++++... -..+=+.||+|.+.. .+....+..+|+||+++..
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~----~la~~~~~~~v~gvD~s~~ 66 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTE----LLVERWPAARITGIDSSPA 66 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHH----HHHHHCCCCEEEEEECCHH
Confidence 3445567888877433 235566777775543 4444456789999998754
No 373
>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional
Probab=21.73 E-value=1.4e+02 Score=24.13 Aligned_cols=65 Identities=22% Similarity=0.101 Sum_probs=42.1
Q ss_pred HHHHHHHHHh--cCCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 156 IETSKLLALK--EGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 156 ~~a~~~l~~~--eGi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
++.++...++ ..+.+.-|+|+==.+++.++.+.. .++.+++.+.|.-..+++-|-+...++.|++
T Consensus 29 ~e~i~~a~~~~~~~i~vs~SGGKDS~vlL~L~~~~~---~~i~vvfiDTG~~~pet~e~~~~~~~~~gl~ 95 (241)
T PRK02090 29 QERLAWALENFGGRLALVSSFGAEDAVLLHLVAQVD---PDIPVIFLDTGYLFPETYRFIDELTERLLLN 95 (241)
T ss_pred HHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHhcC---CCCcEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 3334444332 346777789988888888887642 2355555588876666776777777776664
No 374
>PRK14987 gluconate operon transcriptional regulator; Provisional
Probab=21.72 E-value=4.6e+02 Score=21.64 Aligned_cols=33 Identities=12% Similarity=0.209 Sum_probs=22.5
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+|||. +-.+..|+..++++.+- ++.|+|.+
T Consensus 239 ~~~ai~~~--nD~~A~g~~~al~~~g~~vP~disvigfD 275 (331)
T PRK14987 239 QLDGVFCT--NDDLAVGAAFECQRLGLKVPDDMAIAGFH 275 (331)
T ss_pred CCCEEEEC--CcHHHHHHHHHHHHcCCCCCCccEEEeeC
Confidence 47888875 44566688888887652 46677764
No 375
>PRK13054 lipid kinase; Reviewed
Probab=21.62 E-value=4.7e+02 Score=21.70 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHHhh-CCCccEEEEecCcchhHHHHHHHHHhhCCCc-EEEEEeCCCCc
Q 027277 68 EIWNDS-GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNI-KVYGIEPSESA 115 (225)
Q Consensus 68 Ei~~Ql-~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~-~vigVe~~~~~ 115 (225)
|+.+|. ...+|. |+.+|+=||+..+..++....... -.+||=|.++.
T Consensus 47 ~~a~~~~~~~~d~-vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~GTg 95 (300)
T PRK13054 47 RYVEEALALGVAT-VIAGGGDGTINEVATALAQLEGDARPALGILPLGTA 95 (300)
T ss_pred HHHHHHHHcCCCE-EEEECCccHHHHHHHHHHhhccCCCCcEEEEeCCcH
Confidence 444443 133675 456777788889988886542111 13788888874
No 376
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=21.61 E-value=2.1e+02 Score=21.56 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=30.9
Q ss_pred hHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 61 g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
-|...+.|+-+.+. +-.+.++.-|..|+..-+.++..+. .-+++||-|..
T Consensus 15 ~~~~~A~~lg~~La-~~g~~lv~Gg~~GlM~a~a~ga~~~--gg~viGVlp~~ 64 (159)
T TIGR00725 15 ELYEIAYRLGKELA-KKGHILINGGRTGVMEAVSKGAREA--GGLVVGILPDE 64 (159)
T ss_pred HHHHHHHHHHHHHH-HCCCEEEcCCchhHHHHHHHHHHHC--CCeEEEECChh
Confidence 45556677766663 2245666645556666666677654 46889997754
No 377
>PRK07454 short chain dehydrogenase; Provisional
Probab=21.47 E-value=4e+02 Score=20.77 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=36.7
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+..+ .+...+...++.+......++ +. +-.. .........++.+.. +++|.+|.++|..
T Consensus 23 a~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~~-~~-D~~~-~~~~~~~~~~~~~~~-~~id~lv~~ag~~ 94 (241)
T PRK07454 23 ALAFAKAGWDLALVARS--QDALEALAAELRSTGVKAAAY-SI-DLSN-PEAIAPGIAELLEQF-GCPDVLINNAGMA 94 (241)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHhCCCcEEEE-Ec-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCcc
Confidence 44455679999988753 222222222232222122232 22 2222 223333445666666 5699999998854
No 378
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.45 E-value=4.5e+02 Score=21.38 Aligned_cols=73 Identities=16% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 8 ERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 8 ~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.-.+.+-..|++|+.+.... +..+...++.++.+...++ +. |-.. ......+..++.++. +++|.+|..+|..
T Consensus 22 aiA~~la~~G~~Vil~~r~~---~~~~~~~~~~~~~~~~~~~-~~-Dv~d-~~~v~~~~~~i~~~~-g~iDilVnnAG~~ 94 (274)
T PRK08415 22 GIAKACFEQGAELAFTYLNE---ALKKRVEPIAQELGSDYVY-EL-DVSK-PEHFKSLAESLKKDL-GKIDFIVHSVAFA 94 (274)
T ss_pred HHHHHHHHCCCEEEEEecCH---HHHHHHHHHHHhcCCceEE-Ee-cCCC-HHHHHHHHHHHHHHc-CCCCEEEECCccC
Confidence 33445556799999887531 1122333343332222221 22 2333 334555666777776 5799999999853
No 379
>PTZ00010 tubulin beta chain; Provisional
Probab=21.45 E-value=2e+02 Score=25.80 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=35.4
Q ss_pred eEEeCCCCCCCChHhhHhhhHHHHHHhhC----------CCccEEEEecC-cchhHHHHHHH----HHhhCCCcEE--EE
Q 027277 46 GYILGQFENPANPEIHYETTGPEIWNDSG----------GKVDAFIAGIG-TGGTVTGAGRF----LKEKNPNIKV--YG 108 (225)
Q Consensus 46 ~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~----------~~~d~iv~~~G-~Gg~~aGi~~~----~k~~~~~~~v--ig 108 (225)
.++....+...+|..||.+.|.|+.++.- +.++.+++..+ +|||=+|++.. +++.+|+.-+ ++
T Consensus 89 ~~~~~~~gagNnwa~G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~~~ 168 (445)
T PTZ00010 89 NFIFGQSGAGNNWAKGHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFS 168 (445)
T ss_pred ceeecccCCccccccchhhhhHHHHHHHHHHHhhhhhhccCccceEEEeccCCCccccHHHHHHHHHHhhCCccceeeeE
Confidence 34444445556667788888887765531 23555544433 34455565544 4445554323 34
Q ss_pred EeCC
Q 027277 109 IEPS 112 (225)
Q Consensus 109 Ve~~ 112 (225)
|-|.
T Consensus 169 v~P~ 172 (445)
T PTZ00010 169 VFPS 172 (445)
T ss_pred ecCC
Confidence 4454
No 380
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=21.44 E-value=2.4e+02 Score=22.29 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=22.8
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.+|+|+++. ..+..|+..++++.+. ++.|+|.+
T Consensus 178 ~~~ai~~~~--d~~a~g~~~~l~~~g~~vp~di~vvg~d 214 (269)
T cd06275 178 RPTAVFCGN--DLMAMGALCAAQEAGLRVPQDLSIIGYD 214 (269)
T ss_pred CCcEEEECC--hHHHHHHHHHHHHcCCCCCcceEEEEeC
Confidence 578888753 4566688888887653 46677764
No 381
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=21.43 E-value=4.7e+02 Score=22.29 Aligned_cols=34 Identities=6% Similarity=0.120 Sum_probs=20.0
Q ss_pred hhhHHHHHHhhCCCccEEEEecCcchhH--HHHHHHHH
Q 027277 63 ETTGPEIWNDSGGKVDAFIAGIGTGGTV--TGAGRFLK 98 (225)
Q Consensus 63 ~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~--aGi~~~~k 98 (225)
..+..+++++++ ++.+++-+|-|+++ ..+..+++
T Consensus 214 ~li~~~~l~~mk--~gavlIN~aRG~~vd~~aL~~aL~ 249 (330)
T PRK12480 214 HLFDKAMFDHVK--KGAILVNAARGAVINTPDLIAAVN 249 (330)
T ss_pred HHHhHHHHhcCC--CCcEEEEcCCccccCHHHHHHHHH
Confidence 334556666663 56777777777766 33444443
No 382
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=21.41 E-value=2.5e+02 Score=22.10 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=21.5
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+||++ +.....|+..++++.+- +++|++++
T Consensus 181 ~~~ai~~~--~d~~a~g~~~al~~~g~~vp~~i~iig~d 217 (268)
T cd06271 181 RPTAIVCS--SELMALGVLAALAEAGLRPGRDVSVVGFD 217 (268)
T ss_pred CCCEEEEc--CcHHHHHHHHHHHHhCCCCCcceeEEEec
Confidence 47887775 34455688888877642 45666664
No 383
>PRK08275 putative oxidoreductase; Provisional
Probab=21.36 E-value=1.2e+02 Score=27.79 Aligned_cols=34 Identities=29% Similarity=0.514 Sum_probs=22.8
Q ss_pred ccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCC
Q 027277 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPS 112 (225)
Q Consensus 77 ~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~ 112 (225)
.|.||+..|.+|+.|.+... +.++..+|+.++-.
T Consensus 10 ~DVlVIG~G~AGl~AAi~aa--~~g~g~~VilveK~ 43 (554)
T PRK08275 10 TDILVIGGGTAGPMAAIKAK--ERNPALRVLLLEKA 43 (554)
T ss_pred cCEEEECcCHHHHHHHHHHH--HhCCCCeEEEEeCC
Confidence 68999988877777765442 22345678888744
No 384
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=21.34 E-value=4.1e+02 Score=22.65 Aligned_cols=92 Identities=15% Similarity=0.061 Sum_probs=44.2
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeE-EeCCCCCCCChHhhHhhhHHHHHHhhCC-CccEEEEecCcch
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGQFENPANPEIHYETTGPEIWNDSGG-KVDAFIAGIGTGG 88 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~-~~d~iv~~~G~Gg 88 (225)
+.++.+|-++.++.+...++...+...+..++.+-.+ |..-..||.. ....|+.++... ++| +|+++|||+
T Consensus 16 ~~~~~~~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~------~~v~~~~~~~~~~~~D-~IIavGGGS 88 (351)
T cd08170 16 EYLARLGKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTR------AEIERLAEIARDNGAD-VVIGIGGGK 88 (351)
T ss_pred HHHHHhCCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCH------HHHHHHHHHHhhcCCC-EEEEecCch
Confidence 4456677777666542223334444444444431111 2111124432 123455555432 477 578999887
Q ss_pred hHHHHHHHHHhhCCCcEEEEEeC
Q 027277 89 TVTGAGRFLKEKNPNIKVYGIEP 111 (225)
Q Consensus 89 ~~aGi~~~~k~~~~~~~vigVe~ 111 (225)
.+ =++++.... ...+++.|-+
T Consensus 89 ~i-D~aK~ia~~-~~~P~iaIPT 109 (351)
T cd08170 89 TL-DTAKAVADY-LGAPVVIVPT 109 (351)
T ss_pred hh-HHHHHHHHH-cCCCEEEeCC
Confidence 76 334444332 2456777743
No 385
>PRK07208 hypothetical protein; Provisional
Probab=21.34 E-value=3.2e+02 Score=24.24 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=20.0
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
..|.+|+..| ++|++.++.......+|+.+|...
T Consensus 4 ~~~vvIiGaG----isGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 4 KKSVVIIGAG----PAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCcEEEECcC----HHHHHHHHHHHHCCCcEEEEecCC
Confidence 3577777655 455555554443355677777654
No 386
>PRK13660 hypothetical protein; Provisional
Probab=21.11 E-value=2.5e+02 Score=21.88 Aligned_cols=51 Identities=20% Similarity=0.100 Sum_probs=33.1
Q ss_pred hhHHHHHHhhCCCccEEEEec--CcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 64 TTGPEIWNDSGGKVDAFIAGI--GTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 64 t~~~Ei~~Ql~~~~d~iv~~~--G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.+=.+|.+.+....++++++. |.--..+-++..+|..+|+.+++.+-|...
T Consensus 30 aL~~~l~~~~e~G~~wfi~ggalG~d~wAaEvvl~LK~~yp~lkL~~~~PF~~ 82 (182)
T PRK13660 30 AIKRKLIALLEEGLEWVIISGQLGVELWAAEVVLELKEEYPDLKLAVITPFEE 82 (182)
T ss_pred HHHHHHHHHHHCCCCEEEECCcchHHHHHHHHHHHHHhhCCCeEEEEEeCccc
Confidence 333455555544578877763 233344566777788889999999977655
No 387
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=21.10 E-value=2.9e+02 Score=24.29 Aligned_cols=88 Identities=18% Similarity=0.169 Sum_probs=50.8
Q ss_pred HHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecC
Q 027277 9 RRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIG 85 (225)
Q Consensus 9 k~~~~~~~GA~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G 85 (225)
-.+.++.+|++|+.+++.....+ ......++.++- +...++---++.....-+.-+..|.+++|+ ++.+++-+|
T Consensus 131 vA~~l~a~G~~V~~~dp~~~~~~~~~~~~~L~ell~~s-DiI~lh~PLt~~g~~~T~~li~~~~l~~mk--~gailIN~a 207 (378)
T PRK15438 131 LQARLEALGIKTLLCDPPRADRGDEGDFRSLDELVQEA-DILTFHTPLFKDGPYKTLHLADEKLIRSLK--PGAILINAC 207 (378)
T ss_pred HHHHHHHCCCEEEEECCcccccccccccCCHHHHHhhC-CEEEEeCCCCCCcccccccccCHHHHhcCC--CCcEEEECC
Confidence 34667899999999985321001 111234454444 554433211221101124456678889884 789999999
Q ss_pred cchhH--HHHHHHHHh
Q 027277 86 TGGTV--TGAGRFLKE 99 (225)
Q Consensus 86 ~Gg~~--aGi~~~~k~ 99 (225)
-|+.+ ..+..+++.
T Consensus 208 RG~vVDe~AL~~aL~~ 223 (378)
T PRK15438 208 RGAVVDNTALLTCLNE 223 (378)
T ss_pred CchhcCHHHHHHHHHh
Confidence 99987 555566654
No 388
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=21.06 E-value=1.4e+02 Score=21.89 Aligned_cols=33 Identities=33% Similarity=0.518 Sum_probs=21.5
Q ss_pred EEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCC
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~ 114 (225)
.+=+.||+|-..-.++. .+++..+++||+....
T Consensus 7 iLDlGcG~G~~~~~l~~---~~~~~~~i~gvD~s~~ 39 (152)
T PF13847_consen 7 ILDLGCGTGRLLIQLAK---ELNPGAKIIGVDISEE 39 (152)
T ss_dssp EEEET-TTSHHHHHHHH---HSTTTSEEEEEESSHH
T ss_pred EEEecCcCcHHHHHHHH---hcCCCCEEEEEECcHH
Confidence 34466777766654433 5577889999987764
No 389
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=21.04 E-value=3.3e+02 Score=23.63 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=14.2
Q ss_pred HHHHHHHHc--CCEEEEeCCCCChHHH
Q 027277 8 ERRIILRAL--GAEVYLADPAVGFEGF 32 (225)
Q Consensus 8 ~k~~~~~~~--GA~v~~~~~~~~~~~~ 32 (225)
+|++.+... |++++.++....+.+.
T Consensus 110 er~~~L~~a~~~~d~iviD~AhGhs~~ 136 (343)
T TIGR01305 110 EKMTSILEAVPQLKFICLDVANGYSEH 136 (343)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCcHHH
Confidence 455555444 4777777765444443
No 390
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.03 E-value=4.2e+02 Score=20.92 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=15.9
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEE
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGI 109 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigV 109 (225)
+||+|+|. +..+..|+..++++.+. ++.|+|.
T Consensus 181 ~~~ai~~~--~d~~a~g~~~al~~~g~~di~v~g~ 213 (271)
T cd06321 181 KLDGVFAI--NDPTAIGADLAAKQAGRNDIKITSV 213 (271)
T ss_pred CCCEEEEC--CchhHHHHHHHHHHcCCCCcEEEEe
Confidence 45666654 22344466666665443 3444443
No 391
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.01 E-value=2.9e+02 Score=21.97 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=21.4
Q ss_pred CccEEEEecCcchhHHHHHHHHHhhCC----CcEEEEEe
Q 027277 76 KVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIE 110 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~aGi~~~~k~~~~----~~~vigVe 110 (225)
.||+||+. +.....|+..++++.+. ++.|++++
T Consensus 186 ~~~ai~~~--~~~~a~g~~~~l~~~g~~ip~~i~ii~~d 222 (275)
T cd06295 186 DFDAVFAA--SDLMALGALRALREAGRRVPEDVAVVGFD 222 (275)
T ss_pred CCCEEEEC--CcHHHHHHHHHHHHhCCCCccceEEEeeC
Confidence 47777776 34556688888877653 45666664
No 392
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=20.82 E-value=5.6e+02 Score=22.24 Aligned_cols=14 Identities=29% Similarity=0.629 Sum_probs=10.8
Q ss_pred CccEEEEecCcchhH
Q 027277 76 KVDAFIAGIGTGGTV 90 (225)
Q Consensus 76 ~~d~iv~~~G~Gg~~ 90 (225)
++| +|+++|||+.+
T Consensus 87 ~~D-~IIaiGGGS~i 100 (382)
T PRK10624 87 GAD-YLIAIGGGSPQ 100 (382)
T ss_pred CCC-EEEEeCChHHH
Confidence 477 57889988776
No 393
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.76 E-value=4.3e+02 Score=20.89 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=19.3
Q ss_pred CCccEEEEecCcchhHHHHHHHHHhhCC--CcEEEEEe
Q 027277 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNP--NIKVYGIE 110 (225)
Q Consensus 75 ~~~d~iv~~~G~Gg~~aGi~~~~k~~~~--~~~vigVe 110 (225)
+.+|+||+.. .....|+..++++.+. ++.|+|.+
T Consensus 184 ~~~~ai~~~~--d~~a~g~~~al~~~g~~~di~vvg~d 219 (277)
T cd06319 184 PDIRAIWLQG--SDRYQGALDAIATAGKTGKVLLICFD 219 (277)
T ss_pred CCCCEEEECC--CccchHHHHHHHHcCCCCCEEEEEcC
Confidence 3466766653 3344577777776553 35555554
No 394
>PRK07024 short chain dehydrogenase; Provisional
Probab=20.61 E-value=4.4e+02 Score=20.90 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=35.2
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
+.+...|++|+.++.. .+..+...+.....+...++ +. |... ......+..++.++. +.+|.+|..+|.
T Consensus 20 ~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~-~~-Dl~~-~~~i~~~~~~~~~~~-g~id~lv~~ag~ 88 (257)
T PRK07024 20 REYARQGATLGLVARR---TDALQAFAARLPKAARVSVY-AA-DVRD-ADALAAAAADFIAAH-GLPDVVIANAGI 88 (257)
T ss_pred HHHHHCCCEEEEEeCC---HHHHHHHHHhcccCCeeEEE-Ec-CCCC-HHHHHHHHHHHHHhC-CCCCEEEECCCc
Confidence 3455569999988753 22222222211111122222 22 2333 333444555666666 568999998875
No 395
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=20.59 E-value=5.9e+02 Score=22.42 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=43.6
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHh--hCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWND--SGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Q--l~~~~d~iv~~~G~G 87 (225)
++.++..+.+++.|+. ++..+..+.++++. + +++.|-. ....+|... +.++ +...-..+++-+|+|
T Consensus 312 l~air~~~g~~v~Vsd----~eI~~A~~~l~~~~-g-i~vEpa~--A~alAal~k----~~~~g~i~~~~~Vv~vlTG~g 379 (398)
T TIGR03844 312 FDALIATGGQMYGVSN----KEAVSAGKLFEESE-G-IDILPAA--AVAVAALVK----AVESGFIGPDDDILLNITGGG 379 (398)
T ss_pred HHHHHHhCCEEEEECH----HHHHHHHHHHHhhC-C-ccccccH--HHHHHHHHH----HHHhCCCCCCCeEEEEECCcc
Confidence 6788999999999983 34554444555544 4 5565421 111233222 2222 311112344445443
Q ss_pred hhHHHHHHHHHhhCCCcEEEEEeCCC
Q 027277 88 GTVTGAGRFLKEKNPNIKVYGIEPSE 113 (225)
Q Consensus 88 g~~aGi~~~~k~~~~~~~vigVe~~~ 113 (225)
+|.+..+-+.+=|+|+.
T Consensus 380 ---------lK~~~~~~~~~~~~~~~ 396 (398)
T TIGR03844 380 ---------YKRLREDLPRYQIEPDL 396 (398)
T ss_pred ---------hhhHHhhCceeecCCcc
Confidence 55555566677777653
No 396
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=20.57 E-value=4.6e+02 Score=21.16 Aligned_cols=55 Identities=25% Similarity=0.221 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhcCCeecc-hHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcCh
Q 027277 152 SEEAIETSKLLALKEGLLVGI-SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209 (225)
Q Consensus 152 d~e~~~a~~~l~~~eGi~~ep-ssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~ 209 (225)
...+...+-.+. +++++-|- -+-+-..+..++..+ ...+++++|+++|.=.+.++
T Consensus 97 wrraR~~l~~m~-~~~~~~eniDGeAl~~a~~rL~~r--~e~rkiLiViSDG~P~d~st 152 (219)
T PF11775_consen 97 WRRARRNLGLMM-REGLLKENIDGEALRWAAERLLAR--PEQRKILIVISDGAPADDST 152 (219)
T ss_pred hhhHHHhHHHHh-hccccccCCcHHHHHHHHHHHHcC--CccceEEEEEeCCCcCcccc
Confidence 333444444444 46777777 555555666677655 35678999997776554443
No 397
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=20.56 E-value=5.7e+02 Score=22.23 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=33.4
Q ss_pred HHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCC-eEEeCCCC-CCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 11 IILRALGAEVYLADPAVGFE-GFVKKGEEILNRTPN-GYILGQFE-NPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~-~~~~~a~~~~~~~~~-~~~~~~~~-~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
+.++.+|-++.++.+....+ ...+...+..++.+- ....+... ++. ..-... +.+++.+ .++|. |+++|||
T Consensus 16 ~~~~~~g~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~~~--~~~v~~-~~~~~~~--~~~D~-IIaiGGG 89 (386)
T cd08191 16 RLAARLGSRALIVTDERMAGTPVFAELVQALAAAGVEVEVFDGVLPDLP--RSELCD-AASAAAR--AGPDV-IIGLGGG 89 (386)
T ss_pred HHHHHcCCeEEEEECcchhhcchHHHHHHHHHHcCCeEEEECCCCCCcC--HHHHHH-HHHHHHh--cCCCE-EEEeCCc
Confidence 45677886675554322222 344444444444311 22222221 222 111111 2233333 35775 7789988
Q ss_pred hhH
Q 027277 88 GTV 90 (225)
Q Consensus 88 g~~ 90 (225)
+.+
T Consensus 90 S~i 92 (386)
T cd08191 90 SCI 92 (386)
T ss_pred hHH
Confidence 776
No 398
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=20.55 E-value=4.7e+02 Score=21.22 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=25.1
Q ss_pred HHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCC-CcEEEEEe
Q 027277 68 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP-NIKVYGIE 110 (225)
Q Consensus 68 Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~-~~~vigVe 110 (225)
++++.- +.||+|++.- -....|+...+++.+. ++.|+|.+
T Consensus 200 ~~l~~~-~~~~ai~~~~--d~~A~g~l~al~~~G~~dv~vig~d 240 (295)
T PRK10653 200 NLLTAH-PDVQAVFAQN--DEMALGALRALQTAGKSDVMVVGFD 240 (295)
T ss_pred HHHHhC-CCcCEEEECC--ChhHHHHHHHHHHcCCCceEEEEeC
Confidence 444432 3577777643 3344578888888775 67777775
No 399
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=20.54 E-value=4.1e+02 Score=20.79 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=31.6
Q ss_pred hhHhhhHHHHHHhhCCCccEEEEecCcchhHHHHHHHHHhhCCCcEEEEEeCCCCc
Q 027277 60 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESA 115 (225)
Q Consensus 60 ~g~~t~~~Ei~~Ql~~~~d~iv~~~G~Gg~~aGi~~~~k~~~~~~~vigVe~~~~~ 115 (225)
......-.+++.++...-..+=++||+|-.+.-+ ....+..+++||+.+...
T Consensus 28 ~~~~~~~~~~l~~~~~~~~VLDiGCG~G~~~~~L----~~~~~~~~v~giDiS~~~ 79 (204)
T TIGR03587 28 AAKLAMFARALNRLPKIASILELGANIGMNLAAL----KRLLPFKHIYGVEINEYA 79 (204)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEecCCCHHHHHH----HHhCCCCeEEEEECCHHH
Confidence 3343344455555533234677888888766544 333356789999987654
No 400
>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin). This enzyme, involved in the assimilation of inorganic sulfate, is designated cysH in Bacteria and MET16 in Saccharomyces cerevisiae. Synonyms include phosphoadenosine phosphosulfate reductase, PAPS reductase, and PAPS reductase, thioredoxin-dependent. In a reaction requiring reduced thioredoxin and NADPH, it converts 3(prime)-phosphoadenylylsulfate (PAPS) to sulfite and adenosine 3(prime),5(prime) diphosphate (PAP). A related family of plant enzymes, scoring below the trusted cutoff, differs in having a thioredoxin-like C-terminal domain, not requiring thioredoxin, and in having a preference for 5(prime)-adenylylsulfate (APS) over PAPS.
Probab=20.48 E-value=2.1e+02 Score=22.40 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=37.9
Q ss_pred CCeecchHHHHHHHHHHHhhcCCCCCCEEEEEecCCCCCCcChhhchhHHHhcCCCC
Q 027277 167 GLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMP 223 (225)
Q Consensus 167 Gi~~epssgaalaa~~~~~~~~~~~~~~vv~v~~~gG~~~~~~~~~~~~~~~~~~~~ 223 (225)
.+.+--|+|+-=.+++.++.+.. + +-.|+++ +.|..+.+++-|-+......|++
T Consensus 15 ~~~~s~SgGKDS~Vll~L~~~~~-~-~~~v~f~-DTg~efpeT~efv~~~~~~~~l~ 68 (212)
T TIGR00434 15 HLVYSTSFGIQGAVLLDLVSKIS-P-DIPVIFL-DTGYHFPETYELIDELTERYPLN 68 (212)
T ss_pred CEEEEecCCHHHHHHHHHHHhcC-C-CCcEEEe-cCCCCCHHHHHHHHHHHHHhCCc
Confidence 45666688888888888887642 2 2234444 88999999887777777776654
No 401
>PRK07576 short chain dehydrogenase; Provisional
Probab=20.44 E-value=4.5e+02 Score=21.01 Aligned_cols=71 Identities=17% Similarity=0.185 Sum_probs=36.3
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~ 86 (225)
.+.+...|++|+.++.. .++..+...++.+...... ..+.+ ... ..-......++.++. +.+|.+|...|.
T Consensus 26 a~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~-~~~~D-v~~-~~~i~~~~~~~~~~~-~~iD~vi~~ag~ 96 (264)
T PRK07576 26 AQAFARAGANVAVASRS--QEKVDAAVAQLQQAGPEGL-GVSAD-VRD-YAAVEAAFAQIADEF-GPIDVLVSGAAG 96 (264)
T ss_pred HHHHHHCCCEEEEEeCC--HHHHHHHHHHHHHhCCceE-EEECC-CCC-HHHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 34456679999988753 2222222233333221222 22222 222 233344455666666 468999988764
No 402
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=20.43 E-value=1.5e+02 Score=25.03 Aligned_cols=28 Identities=32% Similarity=0.376 Sum_probs=17.4
Q ss_pred HHHhhCCCccEEEEecC-cchhHHHHHHHH
Q 027277 69 IWNDSGGKVDAFIAGIG-TGGTVTGAGRFL 97 (225)
Q Consensus 69 i~~Ql~~~~d~iv~~~G-~Gg~~aGi~~~~ 97 (225)
|.+++ ...|.+|+.+| +|||=+|++..+
T Consensus 78 I~~~l-~~~d~v~i~aglGGGTGSG~ap~i 106 (304)
T cd02201 78 IKEAL-EGADMVFITAGMGGGTGTGAAPVI 106 (304)
T ss_pred HHHHH-hCCCEEEEeeccCCCcchhHHHHH
Confidence 33444 35788888887 556666665544
No 403
>PRK13059 putative lipid kinase; Reviewed
Probab=20.33 E-value=4.4e+02 Score=21.88 Aligned_cols=70 Identities=13% Similarity=0.057 Sum_probs=0.0
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhh---CCCccEEEEecCc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDS---GGKVDAFIAGIGT 86 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql---~~~~d~iv~~~G~ 86 (225)
+..++..|.++.... ....+..+.+++.+++..+...+-..+...+ |++..+ +.++-.-++|.||
T Consensus 25 ~~~l~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~d~vi~~GGDGTv~----------evv~gl~~~~~~~~lgviP~GT 92 (295)
T PRK13059 25 IRIHQEKGYLVVPYR--ISLEYDLKNAFKDIDESYKYILIAGGDGTVD----------NVVNAMKKLNIDLPIGILPVGT 92 (295)
T ss_pred HHHHHHCCcEEEEEE--ccCcchHHHHHHHhhcCCCEEEEECCccHHH----------HHHHHHHhcCCCCcEEEECCCC
Q ss_pred chhHH
Q 027277 87 GGTVT 91 (225)
Q Consensus 87 Gg~~a 91 (225)
|-.++
T Consensus 93 gNdfA 97 (295)
T PRK13059 93 ANDFA 97 (295)
T ss_pred HhHHH
No 404
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=20.28 E-value=1.5e+02 Score=26.83 Aligned_cols=27 Identities=15% Similarity=-0.087 Sum_probs=23.2
Q ss_pred EEEeCHHHHHHHHHHHHHhcCCeecch
Q 027277 147 VITVSSEEAIETSKLLALKEGLLVGIS 173 (225)
Q Consensus 147 ~~~v~d~e~~~a~~~l~~~eGi~~eps 173 (225)
.|.|+=.+..+++-.-|+.-|+-+=|.
T Consensus 177 NYvv~L~~~v~wLg~kAEe~GvEiyPg 203 (621)
T KOG2415|consen 177 NYVVSLGQLVRWLGEKAEELGVEIYPG 203 (621)
T ss_pred cEEEEHHHHHHHHHHHHHhhCceeccc
Confidence 588888999999888888889888884
No 405
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=20.27 E-value=4.2e+02 Score=20.55 Aligned_cols=72 Identities=17% Similarity=0.043 Sum_probs=36.2
Q ss_pred HHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 11 IILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 11 ~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
+.+...|++|+....... +...+...+..... ......+. |... ...-..+..++.++. +++|.+|..+|..
T Consensus 20 ~~l~~~g~~vi~~~r~~~-~~~~~~~~~~~~~~-~~~~~~~~-D~~~-~~~v~~~~~~~~~~~-~~id~vi~~ag~~ 91 (245)
T PRK12824 20 RELLNDGYRVIATYFSGN-DCAKDWFEEYGFTE-DQVRLKEL-DVTD-TEECAEALAEIEEEE-GPVDILVNNAGIT 91 (245)
T ss_pred HHHHHcCCEEEEEeCCcH-HHHHHHHHHhhccC-CeEEEEEc-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 444556999988875321 22222212221111 22222222 2333 333444455666666 5699999998864
No 406
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=20.16 E-value=5e+02 Score=21.38 Aligned_cols=72 Identities=17% Similarity=0.202 Sum_probs=41.1
Q ss_pred hHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-CeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEec
Q 027277 6 SIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP-NGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGI 84 (225)
Q Consensus 6 ~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~ 84 (225)
-+.-.+.+..-|++|+.+.+. .+ +..+++.+.+ +..++...+ -.. ..-.......+.++. +++|.+|--+
T Consensus 19 G~A~A~~l~~~G~~vvl~aRR---~d---rL~~la~~~~~~~~~~~~~D-VtD-~~~~~~~i~~~~~~~-g~iDiLvNNA 89 (246)
T COG4221 19 GEATARALAEAGAKVVLAARR---EE---RLEALADEIGAGAALALALD-VTD-RAAVEAAIEALPEEF-GRIDILVNNA 89 (246)
T ss_pred HHHHHHHHHHCCCeEEEEecc---HH---HHHHHHHhhccCceEEEeec-cCC-HHHHHHHHHHHHHhh-CcccEEEecC
Confidence 345566777889999999853 23 3334444442 234444443 222 223333444455556 5799999988
Q ss_pred Cc
Q 027277 85 GT 86 (225)
Q Consensus 85 G~ 86 (225)
|.
T Consensus 90 Gl 91 (246)
T COG4221 90 GL 91 (246)
T ss_pred CC
Confidence 74
No 407
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=20.06 E-value=1.8e+02 Score=24.73 Aligned_cols=36 Identities=19% Similarity=0.073 Sum_probs=27.4
Q ss_pred EEEEecCcchhHHHHHHHHHhh--CCCcEEEEEeCCCC
Q 027277 79 AFIAGIGTGGTVTGAGRFLKEK--NPNIKVYGIEPSES 114 (225)
Q Consensus 79 ~iv~~~G~Gg~~aGi~~~~k~~--~~~~~vigVe~~~~ 114 (225)
.|..|+|+|=|.+.+...++.. ....+++-+.|..+
T Consensus 3 vi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~ 40 (358)
T TIGR01587 3 VIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRA 40 (358)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHH
Confidence 4678899999999888887654 34568888888654
No 408
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=20.06 E-value=4.5e+02 Score=20.81 Aligned_cols=71 Identities=15% Similarity=0.267 Sum_probs=37.1
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEeCCCCCCCChHhhHhhhHHHHHHhhCCCccEEEEecCcc
Q 027277 10 RIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTG 87 (225)
Q Consensus 10 ~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~Ql~~~~d~iv~~~G~G 87 (225)
.+.+...|++|+.+.... .. +.+.+...+.+..+..-+. |... ......+..++.++. +.+|.+|...|..
T Consensus 32 a~~l~~~G~~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~-D~~~-~~~i~~~~~~~~~~~-g~id~li~~ag~~ 102 (258)
T PRK06935 32 AVALAKAGADIIITTHGT---NW-DETRRLIEKEGRKVTFVQV-DLTK-PESAEKVVKEALEEF-GKIDILVNNAGTI 102 (258)
T ss_pred HHHHHHCCCEEEEEeCCc---HH-HHHHHHHHhcCCceEEEEc-CCCC-HHHHHHHHHHHHHHc-CCCCEEEECCCCC
Confidence 344556799988876431 11 2222222222222222222 2333 334455566777776 5789999988753
No 409
>PLN02541 uracil phosphoribosyltransferase
Probab=20.04 E-value=1.5e+02 Score=24.35 Aligned_cols=20 Identities=30% Similarity=0.331 Sum_probs=10.1
Q ss_pred Ceecc--hHHHHHHHHHHHhhc
Q 027277 168 LLVGI--SSGAAAAAAIRVAKR 187 (225)
Q Consensus 168 i~~ep--ssgaalaa~~~~~~~ 187 (225)
+++|| ++|.++.++++++++
T Consensus 161 lllDpmLATGgS~~~ai~~L~~ 182 (244)
T PLN02541 161 LVVDPMLATGGTIVAAIDELVS 182 (244)
T ss_pred EEECcchhhhHHHHHHHHHHHH
Confidence 45666 444444455544433
Done!