RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 027277
(225 letters)
>gnl|CDD|166206 PLN02565, PLN02565, cysteine synthase.
Length = 322
Score = 350 bits (900), Expect = e-123
Identities = 168/222 (75%), Positives = 197/222 (88%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP++ S+ERRIIL A GAE+ L DPA G +G V+K EEIL +TPN YIL QFENPANP+I
Sbjct: 97 MPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKI 156
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HYETTGPEIW +GGKVDAF++GIGTGGT+TGAG++LKE+NP+IK+YG+EP ESAVL+GG
Sbjct: 157 HYETTGPEIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLSGG 216
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG IP VLDV +LDEV+ VSS+EAIET+KLLALKEGLLVGISSGAAAAA
Sbjct: 217 KPGPHKIQGIGAGFIPGVLDVDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAA 276
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 222
AI++AKRPENAGKLIVVIFPS GERYLS+ LFES++ E ENM
Sbjct: 277 AIKIAKRPENAGKLIVVIFPSFGERYLSSVLFESVKKEAENM 318
>gnl|CDD|177651 PLN00011, PLN00011, cysteine synthase.
Length = 323
Score = 348 bits (894), Expect = e-122
Identities = 167/225 (74%), Positives = 196/225 (87%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MPST S+ERRIILRALGAEV+L D ++G +G ++K EEIL++TP GYI QFENPANPEI
Sbjct: 99 MPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEI 158
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HY TTGPEIW DS GKVD +AG+GTGGT TG G+FLKEKN +IKV +EP ESAVL+GG
Sbjct: 159 HYRTTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLSGG 218
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
QPG HLIQGIG+G+IP LD+ ++DE+I V+ EEAIET+KLLALKEGLLVGISSGAAAAA
Sbjct: 219 QPGPHLIQGIGSGIIPFNLDLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAA 278
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225
A++VAKRPENAGKLIVVIFPS GERYLST LFES+R+E EN+PI+
Sbjct: 279 ALKVAKRPENAGKLIVVIFPSGGERYLSTKLFESVRYEAENLPIE 323
>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase. This model discriminates
cysteine synthases (EC 2.5.1.47) (both CysK and CysM)
from cystathionine beta-synthase, a protein found
primarily in eukaryotes and carrying a C-terminal CBS
domain lacking from this protein. Bacterial proteins
lacking the CBS domain but otherwise showing
resemblamnce to cystathionine beta-synthases and
considerable phylogenetic distance from known cysteine
synthases were excluded from the seed and score below
the trusted cutoff [Amino acid biosynthesis, Serine
family].
Length = 299
Score = 317 bits (814), Expect = e-110
Identities = 132/212 (62%), Positives = 167/212 (78%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T S+ERR +LRA GAE+ L G +G + K EE+ T +L QFENPANPE
Sbjct: 88 MPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEA 147
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HY+TTGPEIW D+ G++D F+AG+GTGGT+TG GR+LKE+NPNIK+ +EP+ES VL+GG
Sbjct: 148 HYKTTGPEIWRDTDGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGG 207
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG IP +LD++++DEVITVS E+AIET++ LA +EG+LVGISSGAA AA
Sbjct: 208 EPGPHKIQGIGAGFIPKILDLSLIDEVITVSDEDAIETARRLAREEGILVGISSGAAVAA 267
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212
A+++AKR ENA K+IV I P GERYLST LF
Sbjct: 268 ALKLAKRLENADKVIVAILPDTGERYLSTGLF 299
>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A. This model distinguishes
cysteine synthase A (CysK) from cysteine synthase B
(CysM). CysM differs in having a broader specificity
that also allows the use of thiosulfate to produce
cysteine thiosulfonate [Amino acid biosynthesis, Serine
family].
Length = 298
Score = 312 bits (802), Expect = e-108
Identities = 139/213 (65%), Positives = 168/213 (78%), Gaps = 2/213 (0%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGY-ILGQFENPANPE 59
MP T SIERR +L+A GAE+ L A G +G + K EEI TPN Y +L QFENPANPE
Sbjct: 87 MPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPE 146
Query: 60 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG 119
IH +TTGPEIW D+ GK+DAF+AG+GTGGT+TG G LKE+ PNIK+ +EP+ES VL+G
Sbjct: 147 IHRKTTGPEIWRDTDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSG 206
Query: 120 GQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAA 179
G+PG H IQGIGAG IP L+ +++DEVITVS EEAIET++ LA +EG+LVGISSGAA A
Sbjct: 207 GKPGPHKIQGIGAGFIPKNLNRSVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVA 266
Query: 180 AAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212
AA+++AKRPE KLIVVI PS GERYLST LF
Sbjct: 267 AALKLAKRPE-PDKLIVVILPSTGERYLSTPLF 298
>gnl|CDD|178587 PLN03013, PLN03013, cysteine synthase.
Length = 429
Score = 309 bits (793), Expect = e-105
Identities = 142/222 (63%), Positives = 176/222 (79%), Gaps = 1/222 (0%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP++ S+ERR++L+A GAE+ L DPA G G V+K EEIL TP+ Y+L QF+NPANP+I
Sbjct: 205 MPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKI 264
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HYETTGPEIW+D+ GKVD F+AGIGTGGT+TG GRF+KEKNP +V G+EP+ES +L+GG
Sbjct: 265 HYETTGPEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDILSGG 324
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG IP LD ++DEVI +SSEEAIET+K LALKEGL+VGISSGAAAAA
Sbjct: 325 KPGPHKIQGIGAGFIPKNLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAA 384
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM 222
AI+VAKRPENAGKLI V ++G R + T S+ +
Sbjct: 385 AIKVAKRPENAGKLIAVSLFASG-RDIYTPRCSSLSGKRWRK 425
>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine
beta-synthase (CBS) and Cysteine synthase. CBS is a
unique heme-containing enzyme that catalyzes a pyridoxal
5'-phosphate (PLP)-dependent condensation of serine and
homocysteine to give cystathionine. Deficiency of CBS
leads to homocystinuria, an inherited disease of sulfur
metabolism characterized by increased levels of the
toxic metabolite homocysteine. Cysteine synthase on the
other hand catalyzes the last step of cysteine
biosynthesis. This subgroup also includes an
O-Phosphoserine sulfhydrylase found in hyperthermophilic
archaea which produces L-cysteine from sulfide and the
more thermostable O-phospho-L-serine.
Length = 291
Score = 298 bits (766), Expect = e-103
Identities = 122/210 (58%), Positives = 151/210 (71%), Gaps = 3/210 (1%)
Query: 1 MPSTYSIERRIILRALGAEVYL--ADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANP 58
MP T S E+R +LRALGAEV L A G +G + K E+ TPN + L QFENPANP
Sbjct: 83 MPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANP 142
Query: 59 EIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN 118
E HYETT PEIW GKVDAF+AG+GTGGT+TG R+LKEKNPN+++ G++P S + +
Sbjct: 143 EAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLFS 202
Query: 119 GGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAA 178
GG PG H I+GIGAG IP LD +++DEV+ VS EEA ++ LA +EGLLVG SSGAA
Sbjct: 203 GGPPGPHKIEGIGAGFIPENLDRSLIDEVVRVSDEEAFAMARRLAREEGLLVGGSSGAAV 262
Query: 179 AAAIRVAKRPENAGKLIVVIFPSAGERYLS 208
AAA+++AKR GK IV I P +GERYLS
Sbjct: 263 AAALKLAKRLG-PGKTIVTILPDSGERYLS 291
>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase.
Length = 368
Score = 299 bits (768), Expect = e-102
Identities = 131/228 (57%), Positives = 173/228 (75%), Gaps = 3/228 (1%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MPS S+ERR+ +RA GAE+ L DP G G VKK E+L TP+ ++L QF NPAN ++
Sbjct: 141 MPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQV 200
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
H+ETTGPEIW D+ G+VD F+ GIG+GGTV+G G++LK KNPN+K+YG+EP+ES VLNGG
Sbjct: 201 HFETTGPEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVLNGG 260
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H I G G G P +LD+ ++++V+ VSSE+A+ ++ LALKEGL+VGISSGA A
Sbjct: 261 KPGPHHITGNGVGFKPDILDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVA 320
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENM---PID 225
A+R+AK PEN GKLIV + PS GERYLS+ LF+ +R E ENM +D
Sbjct: 321 ALRLAKMPENKGKLIVTVHPSFGERYLSSVLFQELRKEAENMQPVSVD 368
>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and
metabolism].
Length = 300
Score = 276 bits (708), Expect = 9e-94
Identities = 122/211 (57%), Positives = 156/211 (73%), Gaps = 4/211 (1%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGF-EGFVKKGEEILNRTPNGYI-LGQFENPANP 58
MP T S ERR +LRALGAEV L A G +G +++ +E+ P + L QFENPANP
Sbjct: 92 MPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANP 151
Query: 59 EIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN 118
E HYETTGPEIW + GKVDAF+AG+GTGGT+TG R+LKE+NPN+++ ++P S +L+
Sbjct: 152 EAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLS 211
Query: 119 GGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAA 178
GG+ G H I+GIGAG +P LD+ ++DEVI VS EEAI T++ LA +EGLLVGISSGAA
Sbjct: 212 GGE-GPHKIEGIGAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAAL 270
Query: 179 AAAIRVAKRPENAGKLIVVIFPSAGERYLST 209
AAA+++AK AGK IV I P +GERYLS
Sbjct: 271 AAALKLAKELP-AGKTIVTILPDSGERYLSK 300
>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional.
Length = 330
Score = 222 bits (567), Expect = 5e-72
Identities = 97/226 (42%), Positives = 133/226 (58%), Gaps = 14/226 (6%)
Query: 1 MPSTYSIERRIILRALGAEVYL------ADPAVGFEGFVKKGEEILNRTPNGYI-LGQFE 53
MP T S E++ +LRALGAE+ L A+P +G + EE++ PNG I QF+
Sbjct: 94 MPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFD 153
Query: 54 NPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113
NPAN E HYETTGPEIW + GKVD F+ +GTGGT+ G R+LKE NP +K+ +P+
Sbjct: 154 NPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTG 213
Query: 114 SAVLN---GGQ---PGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEG 167
SA+ + G+ G + +GIG G I L+ A +D+ I + EEA+ T+ L +EG
Sbjct: 214 SALYSYYKTGELKAEGSSITEGIGQGRITANLEGAPIDDAIRIPDEEALSTAYRLLEEEG 273
Query: 168 LLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
L +G SSG AAA+R+A+ G IV I +GERY S
Sbjct: 274 LCLGGSSGINVAAALRLARE-LGPGHTIVTILCDSGERYQSKLFNP 318
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 192 bits (489), Expect = 6e-61
Identities = 83/212 (39%), Positives = 125/212 (58%), Gaps = 10/212 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP S ER+ +RA GAE+ L G EG E+ NR G +L QF NP NP
Sbjct: 89 MPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE-GKLLDQFNNPDNPYA 147
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HY +TGPEIW +GG++ F++ +GT GT+ G RFLKE+NP +++ G++P E + + G
Sbjct: 148 HYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIPG- 206
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
I+ +P + D +++D V+ + +A T + LA++EG+ G+SSG A AA
Sbjct: 207 ------IRRWPTEYLPGIFDASLVDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAA 260
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212
A+R+A+ E ++V I G+RYLST +F
Sbjct: 261 ALRLAR--ELPDAVVVAIICDRGDRYLSTGVF 290
>gnl|CDD|236972 PRK11761, cysM, cysteine synthase B; Provisional.
Length = 296
Score = 192 bits (489), Expect = 8e-61
Identities = 90/224 (40%), Positives = 125/224 (55%), Gaps = 30/224 (13%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEG-------FVKKGEEILNRTPNGYILGQFE 53
MP S ERR +RA GAE+ L G EG +GE G +L QF
Sbjct: 93 MPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGE--------GKVLDQFA 144
Query: 54 NPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113
NP NP HYETTGPEIW + G++ F++ +GT GT+ G R+LKE+NP +++ G++P E
Sbjct: 145 NPDNPLAHYETTGPEIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEE 204
Query: 114 SAVLNGGQPGKHLIQGI---GAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV 170
G I GI +P + D + +D V+ VS +EA T + LA +EG+
Sbjct: 205 -----GSS-----IPGIRRWPEEYLPKIFDASRVDRVLDVSQQEAENTMRRLAREEGIFC 254
Query: 171 GISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFES 214
G+SSG A AAA+R+A+ NA +IV I G+RYLST +F +
Sbjct: 255 GVSSGGAVAAALRIARENPNA--VIVAIICDRGDRYLSTGVFPA 296
>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase. Members of
this family closely resemble cysteine synthase but
contain an additional C-terminal CBS domain. The
function of any bacterial member included in this family
is proposed but not proven [Amino acid biosynthesis,
Serine family].
Length = 454
Score = 181 bits (460), Expect = 7e-55
Identities = 81/216 (37%), Positives = 124/216 (57%), Gaps = 8/216 (3%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPAN 57
+P S E+ +L+ALGAE+ A F E + + ++ P +IL Q+ NP+N
Sbjct: 92 LPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSN 151
Query: 58 PEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP-----S 112
P HY+ TGPEI GK+D F+AG GTGGT+TG R+LKE NP ++ G +P +
Sbjct: 152 PLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSILA 211
Query: 113 ESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI 172
+ LN + ++GIG IP VLD ++DE I +E+ + ++ L +EGLLVG
Sbjct: 212 QPENLNKTGRTPYKVEGIGYDFIPTVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGG 271
Query: 173 SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLS 208
SSG+A AA++ A+ ++IVV+ P + Y++
Sbjct: 272 SSGSAVVAALKAAEDELTEDQVIVVLLPDSIRNYMT 307
>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein
SbnA. Members of this family include SbnA, a protein of
the staphyloferrin B biosynthesis operon of
Staphylococcus aureus. SbnA and SbnB together appear to
synthesize 2,3-diaminopropionate, a precursor of certain
siderophores and other secondary metabolites. SbnA is a
pyridoxal phosphate-dependent enzyme [Cellular
processes, Biosynthesis of natural products].
Length = 304
Score = 159 bits (405), Expect = 4e-48
Identities = 77/202 (38%), Positives = 110/202 (54%), Gaps = 7/202 (3%)
Query: 12 ILRALGAEVYLA---DPAVGFEGF-VKKGEEILNRTPNGYILGQFENPANPEIHYETTGP 67
+LRA GAEV D G+ G + + E+L P+ Y Q+ NP NP HY TG
Sbjct: 99 LLRAYGAEVEKVTEPDETGGYLGTRIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGR 158
Query: 68 EIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLI 127
EI +D G+ T GT+ G R L+E+ PN KV ++ + +V+ GG PG+ I
Sbjct: 159 EIARAFP-PLDYLFVGVSTTGTLMGCSRRLRERGPNTKVIAVD-AVGSVIFGGPPGRRHI 216
Query: 128 QGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKR 187
G+GA V+P +LD +++D+V+ V + + + LA +EG+L G SSG AA R+ R
Sbjct: 217 PGLGASVVPELLDESLIDDVVHVPEYDTVAGCRRLARREGILAGGSSGTVVAAIKRLLPR 276
Query: 188 PENAGKLIVVIFPSAGERYLST 209
G +V I P GERYL T
Sbjct: 277 IP-PGSTVVAILPDRGERYLDT 297
>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily
(fold type II); this family of pyridoxal phosphate
(PLP)-dependent enzymes catalyzes beta-replacement and
beta-elimination reactions. This CD corresponds to
aminocyclopropane-1-carboxylate deaminase (ACCD),
tryptophan synthase beta chain (Trp-synth_B),
cystathionine beta-synthase (CBS), O-acetylserine
sulfhydrylase (CS), serine dehydratase (Ser-dehyd),
threonine dehydratase (Thr-dehyd), diaminopropionate
ammonia lyase (DAL), and threonine synthase (Thr-synth).
ACCD catalyzes the conversion of
1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate
and ammonia. Tryptophan synthase folds into a tetramer,
where the beta chain is the catalytic PLP-binding
subunit and catalyzes the formation of L-tryptophan from
indole and L-serine. CBS is a tetrameric hemeprotein
that catalyzes condensation of serine and homocysteine
to cystathionine. CS is a homodimer that catalyzes the
formation of L-cysteine from O-acetyl-L-serine.
Ser-dehyd catalyzes the conversion of L- or D-serine to
pyruvate and ammonia. Thr-dehyd is active as a homodimer
and catalyzes the conversion of L-threonine to
2-oxobutanoate and ammonia. DAL is also a homodimer and
catalyzes the alpha, beta-elimination reaction of both
L- and D-alpha, beta-diaminopropionate to form pyruvate
and ammonia. Thr-synth catalyzes the formation of
threonine and inorganic phosphate from
O-phosphohomoserine.
Length = 244
Score = 148 bits (375), Expect = 3e-44
Identities = 76/201 (37%), Positives = 99/201 (49%), Gaps = 39/201 (19%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP S E+ +RALGAEV L F+ + +E+ P Y + QF+NPAN
Sbjct: 80 MPEGASPEKVAQMRALGAEVVLVPG--DFDDAIALAKELAEEDPGAYYVNQFDNPANIAG 137
Query: 61 HYETTGPEIWNDSGG-KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNG 119
T G EI GG K DA + +G GG + G R LKE PN+KV G+EP
Sbjct: 138 QG-TIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPNVKVIGVEP-------- 188
Query: 120 GQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAA 179
EV+TVS EEA+E +LLA +EG+LV SS AA A
Sbjct: 189 --------------------------EVVTVSDEEALEAIRLLAREEGILVEPSSAAALA 222
Query: 180 AAIRVAKRPENAGKLIVVIFP 200
AA+++AK+ GK +VVI
Sbjct: 223 AALKLAKKL-GKGKTVVVILT 242
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 147 bits (372), Expect = 2e-43
Identities = 74/215 (34%), Positives = 104/215 (48%), Gaps = 16/215 (7%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEG---FVKKGEEILNRTPNGYILGQFENPAN 57
+P S + +++RALGAEV L ++ ++ E+L LGQ+ NP N
Sbjct: 81 VPEGASPGKLLLMRALGAEVILVVSEGDYDDALELAEEAAELLAAYDGPIPLGQYNNP-N 139
Query: 58 PEIHYETTGPEIWNDSG-GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 116
Y+T G EI G G DA + +G GG G R LKE P I+V G+EP +
Sbjct: 140 VIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGLAAGIARGLKELGPGIRVIGVEPEGAPA 199
Query: 117 LNGG------QPGKHLIQGIGAGVIPPVLDV-----AMLDEVITVSSEEAIETSKLLALK 165
L P I G+G G+ + +V VS EEA+E +LLA +
Sbjct: 200 LARSLEAGRRVPKPTTIAGLGPGIPLDGELALELIDEYVGDVYAVSDEEALEAIRLLARR 259
Query: 166 EGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFP 200
EG+LV SS AA AAA+R+A+ GK +VV+
Sbjct: 260 EGILVEPSSAAALAAALRLAELELGKGKRVVVVLT 294
>gnl|CDD|215204 PLN02356, PLN02356, phosphateglycerate kinase.
Length = 423
Score = 119 bits (299), Expect = 1e-31
Identities = 72/193 (37%), Positives = 96/193 (49%), Gaps = 18/193 (9%)
Query: 33 VKKGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTG 92
K+ + G+ QFEN AN HYE TGPEIW + G +DAF+A GTGGT+ G
Sbjct: 207 EKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAG 266
Query: 93 AGRFLKEKNPNIKVYGIEPSESAVLNG-----------------GQPGKHLIQGIGAGVI 135
RFL+EKNPNIK + I+P S + N P + +GIG +
Sbjct: 267 VSRFLQEKNPNIKCFLIDPPGSGLFNKVTRGVMYTREEAEGRRLKNPFDTITEGIGINRL 326
Query: 136 PPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLI 195
+A LD + +EA+E S+ L +GL VG SS A+RVA+ G I
Sbjct: 327 TQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLFVGSSSAMNCVGAVRVAQSL-GPGHTI 385
Query: 196 VVIFPSAGERYLS 208
V I +G R+LS
Sbjct: 386 VTILCDSGMRHLS 398
>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino
acid degradation is the removal of nitrogen. Although
the nitrogen atoms of most amino acids are transferred
to alpha-ketoglutarate before removal, the alpha-amino
group of threonine can be directly converted into NH4+.
The direct deamination is catalyzed by threonine
dehydratase, in which pyridoxal phosphate (PLP) is the
prosthetic group. Threonine dehydratase is widely
distributed in all three major phylogenetic divisions.
Length = 304
Score = 67.5 bits (166), Expect = 2e-13
Identities = 58/217 (26%), Positives = 90/217 (41%), Gaps = 33/217 (15%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T + RA GAEV L F+ K E+ G F +P +
Sbjct: 95 MPETAPAAKVDATRAYGAEVVLYGE--DFDEAEAKARELAEEE--GLT---FIHPFD--- 144
Query: 61 HYE------TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114
+ T G EI +DA +G GG + G +K +PN KV G+EP +
Sbjct: 145 DPDVIAGQGTIGLEILEQVP-DLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGA 203
Query: 115 AV----LNGGQP-----GKHLIQGIGA---GVIPPVLDVAMLDEVITVSSEEAIETSKLL 162
L G+P + G+ G + + ++D+V+TVS +E LL
Sbjct: 204 PAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEIIRKLVDDVVTVSEDEIAAAMLLL 263
Query: 163 ALKEGLLV-GISSGAAAAAAIRVAKRPENAGKLIVVI 198
+E L+ +GA A AA+ + + + GK +VV+
Sbjct: 264 FEREKLVAEP--AGALALAALL-SGKLDLKGKKVVVV 297
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 62.6 bits (153), Expect = 1e-11
Identities = 50/221 (22%), Positives = 77/221 (34%), Gaps = 38/221 (17%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T + R GAEV L F+ EE+ G +
Sbjct: 104 MPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEE--EGLTF----------V 149
Query: 61 H----------YETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE 110
T EI DA +G GG ++G LK +P IKV G+E
Sbjct: 150 PPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVE 209
Query: 111 PSESAV----LNGGQPGKHLIQ------GIGAGVIPPV---LDVAMLDEVITVSSEEAIE 157
P + L G+ L G+ + + ++D+++ V +E
Sbjct: 210 PEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEILRELVDDIVLVDEDEICA 269
Query: 158 TSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
+ L + ++ +GA A AA+ K GK +VVI
Sbjct: 270 AMRDLFERTKIIAE-PAGALALAALLAGKIEPLQGKTVVVI 309
>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form. A
form of threonine dehydratase with two copies of the
C-terminal domain pfam00585 is described by TIGR01124.
This model describes a phylogenetically distinct form
with a single copy of pfam00585. This form branches with
the catabolic threonine dehydratase of E. coli; many
members are designated as catabolic for this reason.
However, the catabolic form lacks any pfam00585 domain.
Many members of this model are found in species with
other Ile biosynthetic enzymes [Amino acid biosynthesis,
Pyruvate family].
Length = 380
Score = 56.7 bits (137), Expect = 1e-09
Identities = 45/149 (30%), Positives = 66/149 (44%), Gaps = 18/149 (12%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE----PSESAVLNG 119
T G EI D VD I +G GG ++G K+ NPN+KV G+E PS L
Sbjct: 137 TIGLEIMED-IPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIGVEAEGAPSMYESLRE 195
Query: 120 GQPGKH-----LIQGI-----GAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLL 169
G+ + GI G + + +D+V+TV EE I + L L+ +
Sbjct: 196 GKIKAVESVRTIADGIAVKKPGDLTFNIIKE--YVDDVVTVDEEE-IANAIYLLLERHKI 252
Query: 170 VGISSGAAAAAAIRVAKRPENAGKLIVVI 198
+ +GAA AA+ K K+ VV+
Sbjct: 253 LAEGAGAAGVAALLEQKVDVKGKKIAVVL 281
>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional.
Length = 404
Score = 52.1 bits (126), Expect = 5e-08
Identities = 39/142 (27%), Positives = 64/142 (45%), Gaps = 29/142 (20%)
Query: 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQP----GKHLI- 127
VD + IG GG ++G +K P ++V G++ + L G+P I
Sbjct: 171 VDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIA 230
Query: 128 QGI---GAGVIP-PVLDVAMLDEVITVSSEE---AI----ETSKLLALKEGLLVGISSGA 176
GI G + ++ ++D+V+TVS EE AI E +KL+ EG +GA
Sbjct: 231 DGIAVKRPGDLTFEIIR-ELVDDVVTVSDEEIARAILLLLERAKLVV--EG------AGA 281
Query: 177 AAAAAIRVAKRPENAGKLIVVI 198
+ AA+ K K++ V+
Sbjct: 282 VSVAALLSGKLDVKGKKVVAVL 303
>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional.
Length = 317
Score = 50.8 bits (122), Expect = 1e-07
Identities = 54/203 (26%), Positives = 93/203 (45%), Gaps = 28/203 (13%)
Query: 13 LRALGAEV-YLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPAN-PEI--HYETTGPE 68
+RALGAEV A+ E ++ E + YI +P N P++ T G E
Sbjct: 110 IRALGAEVRLYGGDALNAELAARRAAEQQGKV---YI-----SPYNDPQVIAGQGTIGME 161
Query: 69 IWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQ 128
+ + +DA +G GG ++G +LK +P ++ G P+ S L +++
Sbjct: 162 LV-EQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVE 220
Query: 129 -------------GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSG 175
G+ G I L ++D+ + VS EE E +L+A + L+ ++G
Sbjct: 221 VAEQPTLSDGTAGGVEPGAITFPLCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAG 280
Query: 176 AAAAAAIRVAKRPENAGKLIVVI 198
A AAA+++A R + GK + V+
Sbjct: 281 VALAAALKLAPRYQ--GKKVAVV 301
>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase. This model represents
threonine dehydratase, the first step in the pathway
converting threonine into isoleucine. At least two other
clades of biosynthetic threonine dehydratases have been
charcterized (TIGR01124 and TIGR01127). Those sequences
described by this model are exclusively found in species
containg the rest of the isoleucine pathway and which
are generally lacking in members of the those other two
clades of threonine dehydratases. Members of this clade
are also often gene clustered with other elements of the
isoleucine pathway [Amino acid biosynthesis, Pyruvate
family].
Length = 409
Score = 46.3 bits (110), Expect = 5e-06
Identities = 38/148 (25%), Positives = 64/148 (43%), Gaps = 16/148 (10%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP----SESAVLNG 119
T EI + K D + +G GG ++G +L +P K+ G+EP S A L
Sbjct: 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEA 215
Query: 120 GQPG--KHLIQGIGAGVIPPVLDV------AMLDEVITVSSEEAIETSKL-LALKEGLLV 170
G+ + + + V D+ + DEV V E A+ T+ L L EG++
Sbjct: 216 GEVVTLDKIDNFVDGAAVKRVGDLNFKALKDVPDEVTLV-PEGAVCTTILDLYNLEGIVA 274
Query: 171 GISSGAAAAAAIRVAKRPENAGKLIVVI 198
+ + AA R+ + + GK +V +
Sbjct: 275 EPAGALSIAALERLGEEIK--GKTVVCV 300
>gnl|CDD|107207 cd06446, Trp-synth_B, Tryptophan synthase-beta: Trptophan synthase
is a bifunctional enzyme that catalyses the last two
steps in the biosynthesis of L-tryptophan via its alpha
and beta reactions. In the alpha reaction, indole
3-glycerol phosphate is cleaved reversibly to
glyceraldehyde 3-phosphate and indole at the active site
of the alpha subunit. In the beta reaction, indole
undergoes a PLP-dependent reaction with L-serine to form
L-tryptophan at the active site of the beta subunit.
Members of this CD, Trp-synth_B, are found in all three
major phylogenetic divisions.
Length = 365
Score = 42.9 bits (102), Expect = 5e-05
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 35/156 (22%)
Query: 74 GGKVDAFIAGIGTGGTVTG-AGRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG- 123
G D IA +G G G F+ +K+ +K+ G+E +A L GG G
Sbjct: 200 GELPDVVIACVGGGSNAAGLFYPFINDKD--VKLIGVEAGGCGLETGGHAAYLFGGTAGV 257
Query: 124 -----KHLIQGIGAGVIPPVLDVAMLD-----------------EVITVSSEEAIETSKL 161
+ +Q ++PP A LD E + V+ EEA+E KL
Sbjct: 258 LHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKL 317
Query: 162 LALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
LA EG++ + S A A AI++AK+ K+IVV
Sbjct: 318 LARTEGIIPALESSHAIAYAIKLAKKL-GKEKVIVV 352
>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed.
Length = 521
Score = 43.2 bits (102), Expect = 5e-05
Identities = 48/172 (27%), Positives = 72/172 (41%), Gaps = 24/172 (13%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG-QP 122
T EI G +DA +G GG + G ++K P IKV G+EP +S L
Sbjct: 174 TVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAA 233
Query: 123 GKHLIQG-------------IGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLL 169
G+ ++ G IG L +DEV+TVS++E K + +
Sbjct: 234 GERVVLGQVGLFADGVAVAQIGEHTFE--LCRHYVDEVVTVSTDELCAAIKDI-YDDTRS 290
Query: 170 VGISSGAAAAAAI-RVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVE 220
+ +GA A A I + A+R G+ +V I A F+ +RH E
Sbjct: 291 ITEPAGALAVAGIKKYAEREGIEGQTLVAIDSGANVN------FDRLRHVAE 336
>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed.
Length = 504
Score = 40.5 bits (96), Expect = 3e-04
Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 60/162 (37%)
Query: 64 TTGPEIWNDSGGKVDA-FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQP 122
T EI +DA F+ +G GG + G ++K+ P IKV G+EP +SA L
Sbjct: 157 TIAMEILQQHPHPLDAVFVP-VGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLK---- 211
Query: 123 GKHLIQGIGAGVIPPVLD--------VAM--------------LDEVITVSSEE---AI- 156
+ AG L VA+ +D+VITV ++E AI
Sbjct: 212 -----AALEAGE-RVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVITVDTDEICAAIK 265
Query: 157 ----------ETSKLLAL--------KEGL----LVGISSGA 176
E + LAL + G+ LV I SGA
Sbjct: 266 DVFEDTRSIAEPAGALALAGLKKYVAQHGIEGETLVAILSGA 307
>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long
form. This model describes a form of threonine
ammonia-lyase, a pyridoxal-phosphate dependent enzyme,
with two copies of the threonine dehydratase C-terminal
domain (pfam00585). Members with known function
participate in isoleucine biosynthesis and are inhibited
by isoleucine. Alternate name: threonine deaminase,
threonine dehydratase. Forms scoring between the trusted
and noise cutoff tend to branch with this subgroup of
threonine ammonia-lyase phylogenetically but have only a
single copy of the C-terminal domain [Amino acid
biosynthesis, Pyruvate family].
Length = 499
Score = 40.5 bits (95), Expect = 4e-04
Identities = 18/54 (33%), Positives = 26/54 (48%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117
T EI +DA +G GG G +K+ P IKV G+EP++S +
Sbjct: 154 TLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCM 207
>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated.
Length = 420
Score = 39.8 bits (94), Expect = 6e-04
Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 18/150 (12%)
Query: 64 TTGPEIWNDSG--GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEP----SESAVL 117
T EI G D +G GG ++G +LKE++P K+ G+EP S A L
Sbjct: 165 TVAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAAL 224
Query: 118 NGGQPGK-----HLIQGIG---AGVIPPVLDVAMLDEVITVSSEEAIETSKL-LALKEGL 168
G+P + G G + + ++D+V+ V E A+ T+ L L KEG
Sbjct: 225 EAGKPVTLEKIDKFVDGAAVARVGDLTFEILKDVVDDVVLV-PEGAVCTTILELYNKEG- 282
Query: 169 LVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
+V +GA + AA+ + K E GK +V +
Sbjct: 283 IVAEPAGALSIAALELYKD-EIKGKTVVCV 311
>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional.
Length = 406
Score = 39.9 bits (93), Expect = 6e-04
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES----AVLNG 119
T G EI D +D I +G GG ++G K NPN+K+ GIE S A L
Sbjct: 162 TIGLEIMEDLP-DLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLRE 220
Query: 120 GQ-----PGKHLIQGIGA---GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVG 171
G+ G + GI G + + +D+++TV +EE++ + + +V
Sbjct: 221 GKIVAHTSGVSICDGISVKYPGDLTFDIAKNYVDDIVTV-TEESVSKAIYKLFEREKIVA 279
Query: 172 ISSGAAAAAAIRVAKRPENAGKLIVVI 198
SGA AAI K K+ +V+
Sbjct: 280 EPSGAVGLAAIMEGKVDVKGKKVAIVV 306
>gnl|CDD|223211 COG0133, TrpB, Tryptophan synthase beta chain [Amino acid transport
and metabolism].
Length = 396
Score = 39.5 bits (93), Expect = 7e-04
Identities = 37/156 (23%), Positives = 69/156 (44%), Gaps = 35/156 (22%)
Query: 74 GGKVDAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG- 123
G DA +A +G G G F+ + ++++ G+E + +A L G+PG
Sbjct: 221 GRLPDAVVACVGGGSNAIGIFHPFIDD--ESVRLIGVEAAGKGIETGKHAATLTAGRPGV 278
Query: 124 -----KHLIQGIGAGVIPPVLDVAMLD-----------------EVITVSSEEAIETSKL 161
+L+Q ++ A LD E ++++ EEA+E +L
Sbjct: 279 LHGMKTYLLQDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQL 338
Query: 162 LALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
L+ EG++ + S A A A+++A + ++IVV
Sbjct: 339 LSRLEGIIPALESSHALAYALKLAPK-LPKDEIIVV 373
>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and
metabolism].
Length = 411
Score = 39.2 bits (92), Expect = 9e-04
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
+ VS EE +E KLLA +EG+L+ S A AA +++ ++ + + +V++
Sbjct: 317 VAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKLREKIIDPDETVVLV 367
>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional.
Length = 403
Score = 38.0 bits (89), Expect = 0.003
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 11/115 (9%)
Query: 78 DAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIE----PSESAVLNGGQP---GKHLIQGI 130
D + IG GG ++G K P+I++ G++ PS A + G G + +GI
Sbjct: 173 DTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVALPCGGSTIAEGI 232
Query: 131 GA---GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAI 182
G + + ++D+++ V SE IE + L L+ V +GAA AA+
Sbjct: 233 AVKQPGQLTLEIVRRLVDDILLV-SEADIEQAVSLLLEIEKTVVEGAGAAGLAAL 286
>gnl|CDD|232897 TIGR00263, trpB, tryptophan synthase, beta subunit. Tryptophan
synthase catalyzes the last step in the biosynthesis of
tryptophan. the beta chain contains the functional
domain for or the synthesis of tryptophan from indole
and serine. The enzyme requires pyridoxal-phosphate as a
cofactor. The pyridoxal-P attachment site is contained
within the conserved region
[LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P
attachment site] which is present between residues
90-100 of the model [Amino acid biosynthesis, Aromatic
amino acid family].
Length = 385
Score = 37.7 bits (88), Expect = 0.003
Identities = 36/153 (23%), Positives = 60/153 (39%), Gaps = 38/153 (24%)
Query: 78 DAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIE--------PSESAVLNGGQPGKHLIQ 128
DA IA +G G G F+ +P++++ G+E +A L G PG ++
Sbjct: 220 DAVIACVGGGSNAIGIFYAFID--DPSVQLIGVEAGGLGIDTDKHAATLAKGSPG--VLH 275
Query: 129 GIGA-------GVIPPVLDV-AMLD-----------------EVITVSSEEAIETSKLLA 163
G+ G I V A LD ++ +EA+E KLL+
Sbjct: 276 GMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLS 335
Query: 164 LKEGLLVGISSGAAAAAAIRVAKRPENAGKLIV 196
EG++ + S A A ++A ++V
Sbjct: 336 RNEGIIPALESSHALAHLEKIAPTLPKDQIVVV 368
>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional.
Length = 403
Score = 37.8 bits (88), Expect = 0.003
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 17/137 (12%)
Query: 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES-AVLNGGQPGKHL----IQGI 130
+D + +G GG ++G K+ NPNIK+ G+ + A+ K + ++ I
Sbjct: 168 DLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTI 227
Query: 131 GAGVIPPVLDVA---------MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAA 181
G+ V D + +D+ + V EE I + L L++ +V +GAA+ AA
Sbjct: 228 ADGI--AVRDASPINLAIILECVDDFVQVDDEE-IANAILFLLEKQKIVVEGAGAASVAA 284
Query: 182 IRVAKRPENAGKLIVVI 198
+ K GK I V+
Sbjct: 285 LLHQKIDLKKGKKIGVV 301
>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase.
Length = 591
Score = 38.0 bits (88), Expect = 0.003
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSES 114
T G EI G + A +G GG + G ++K P +K+ G+EPS++
Sbjct: 246 TVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDA 296
>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate
(PLP) dependent enzyme that catalyses the last reaction
in the synthesis of threonine from aspartate. It
proceeds by converting O-phospho-L-homoserine (OPH) into
threonine and inorganic phosphate. In plants, OPH is an
intermediate between the methionine and
threonine/isoleucine pathways. Thus threonine synthase
competes for OPH with cystathionine-gamma-synthase, the
first enzyme in the methionine pathway. These enzymes
are in general dimers. Members of this CD, Thr-synth_1,
are widely distributed in bacteria, archaea and higher
plants.
Length = 324
Score = 36.8 bits (86), Expect = 0.006
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 147 VITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIF 199
+ VS EE +E KLLA EG+ V +S A+ A ++ + VV+
Sbjct: 264 AVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKLREEGIIDKGERVVVV 316
>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated.
Length = 321
Score = 36.2 bits (84), Expect = 0.008
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 24/141 (17%)
Query: 75 GKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPG---KHLI---- 127
G +DA +G GG ++G + +P KVYG+EP N GQ ++
Sbjct: 171 GPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAG---NDGQQSFRSGEIVHIDT 227
Query: 128 ----------QGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAA 177
Q +G P + ++D+++TVS E ++ + A + ++V +G
Sbjct: 228 PRTIADGAQTQHLGNYTFPIIR--RLVDDIVTVSDAELVDAMRFFAERMKIVVE-PTGCL 284
Query: 178 AAAAIRVAKRPENAGKLIVVI 198
AAA + GK + VI
Sbjct: 285 GAAAAL-RGKVPLKGKRVGVI 304
>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated.
Length = 333
Score = 36.3 bits (84), Expect = 0.009
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 16/136 (11%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE-----SAVLN 118
T G EI D VD I IG GG + G LK NP I + G++ SE +A
Sbjct: 164 TIGLEILEDLW-DVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQ-SENVHGMAASFY 221
Query: 119 GGQPGKHLIQGIGA--------GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLV 170
G+ H G A G + + ++D+++ VS +E I + ++ +V
Sbjct: 222 AGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDE-IRNAMKDLIQRNKVV 280
Query: 171 GISSGAAAAAAIRVAK 186
+GA A AA+ K
Sbjct: 281 TEGAGALATAALLSGK 296
>gnl|CDD|237513 PRK13803, PRK13803, bifunctional phosphoribosylanthranilate
isomerase/tryptophan synthase subunit beta; Provisional.
Length = 610
Score = 35.9 bits (83), Expect = 0.012
Identities = 38/165 (23%), Positives = 69/165 (41%), Gaps = 35/165 (21%)
Query: 78 DAFIAGIGTGGTVTGA-GRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPG----- 123
DA IA +G G G FL +P++K+ G+E +A + G+ G
Sbjct: 440 DAIIACVGGGSNAIGIFYHFLD--DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGS 497
Query: 124 -KHLIQGIGAGVIPPVLDVAMLD-----------------EVITVSSEEAIETSKLLALK 165
+L+Q ++ P A LD +V+ EEA++ KLLA
Sbjct: 498 MTYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKL 557
Query: 166 EGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTA 210
EG++ + S + A A ++ ++ +++V G++ + T
Sbjct: 558 EGIIPALES-SHALAYLKEGRKKFKKKDIVIVNLSGRGDKDIPTL 601
>gnl|CDD|183851 PRK13028, PRK13028, tryptophan synthase subunit beta; Provisional.
Length = 402
Score = 33.3 bits (77), Expect = 0.073
Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 45/157 (28%)
Query: 78 DAFIAGIGTG----GTVTGAGRFLKEKNPNIKVYGIEPS--------ESAVLNGGQPGKH 125
DA +A +G G G + FL +++ +++ G+EP+ +A L G+PG
Sbjct: 232 DAVVACVGGGSNAIGLFSA---FLDDES--VRLVGVEPAGRGLDLGEHAATLTLGKPG-- 284
Query: 126 LIQGI-------GAGVIPPVLDVAM-LD-----------------EVITVSSEEAIETSK 160
+I G G PV +A LD E +T + EEA++
Sbjct: 285 VIHGFKSYVLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFF 344
Query: 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
LL+ EG++ + S A A AI++A + + I+V
Sbjct: 345 LLSRTEGIIPALESSHAVAYAIKLAPE-LSKDETILV 380
>gnl|CDD|215524 PLN02970, PLN02970, serine racemase.
Length = 328
Score = 33.5 bits (77), Expect = 0.074
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 15/130 (11%)
Query: 77 VDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQ-------- 128
+D I I GG ++G K P+IK+ EP + + +I
Sbjct: 176 LDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIA 235
Query: 129 -----GIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIR 183
+G P V D ++D+VITV +E IE KL + ++V S AAA+
Sbjct: 236 DGLRASLGDLTWPVVRD--LVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALS 293
Query: 184 VAKRPENAGK 193
+ R A K
Sbjct: 294 DSFRSNPAWK 303
>gnl|CDD|233403 TIGR01415, trpB_rel, pyridoxal-phosphate dependent TrpB-like
enzyme. This model represents a family of
pyridoxal-phosphate dependent enzyme (pfam00291) closely
related to the beta subunit of tryptophan synthase
(TIGR00263). However, the only case in which a member of
this family replaces a member of TIGR00263 is in
Sulfolobus species which contain two sequences which hit
this model, one of which is proximal to the alpha
subunit. In every other case so far, either the species
appears not to make tryptophan (there is no trp synthase
alpha subunit), or a trp synthase beta subunit matching
TIGR00263 is also found [Unknown function, Enzymes of
unknown specificity].
Length = 419
Score = 33.2 bits (76), Expect = 0.081
Identities = 20/62 (32%), Positives = 30/62 (48%)
Query: 146 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 205
E EEA E + + A EG++ S A AAAI A++ G+ V++F +G
Sbjct: 346 EARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIAAAIDEARKCRETGEEKVILFNLSGHG 405
Query: 206 YL 207
L
Sbjct: 406 LL 407
>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional.
Length = 349
Score = 33.4 bits (76), Expect = 0.082
Identities = 34/119 (28%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 78 DAFIAGIGTGGTVTGAGRFLKEKNPNI---KVYGIEPSESAV---LNGGQPGKHLIQGIG 131
D I IG GG +G LK + + +V G++ A+ L P L G+
Sbjct: 181 DVVIVPIGGGGLASGVALALKSQGVRVVGAQVEGVDSMARAIRGDLREIAPVATLADGVK 240
Query: 132 A---GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKR 187
G + L ++LD+V+ V E ET LAL+E ++ + A AA RV+ +
Sbjct: 241 VKIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRVSGK 299
>gnl|CDD|200462 cd11323, AmyAc_AGS, Alpha amylase catalytic domain found in Alpha
1,3-glucan synthase (also called uridine
diphosphoglucose-1,3-alpha-glucan glucosyltransferase
and 1,3-alpha-D-glucan synthase). Alpha 1,3-glucan
synthase (AGS, EC 2.4.1.183) is an enzyme that catalyzes
the reversible chemical reaction of UDP-glucose and
[alpha-D-glucosyl-(1-3)]n to form UDP and
[alpha-D-glucosyl-(1-3)]n+1. AGS is a component of
fungal cell walls. The cell wall of filamentous fungi is
composed of 10-15% chitin and 10-35% alpha-1,3-glucan.
AGS is triggered in fungi as a response to cell wall
stress and elongates the glucan chains in cell wall
synthesis. This group includes proteins from Ascomycetes
and Basidomycetes. The Alpha-amylase family comprises
the largest family of glycoside hydrolases (GH), with
the majority of enzymes acting on starch, glycogen, and
related oligo- and polysaccharides. These proteins
catalyze the transformation of alpha-1,4 and alpha-1,6
glucosidic linkages with retention of the anomeric
center. The protein is described as having 3 domains: A,
B, C. A is a (beta/alpha) 8-barrel; B is a loop between
the beta 3 strand and alpha 3 helix of A; C is the
C-terminal extension characterized by a Greek key. The
majority of the enzymes have an active site cleft found
between domains A and B where a triad of catalytic
residues (Asp, Glu and Asp) performs catalysis. Other
members of this family have lost the catalytic activity
as in the case of the human 4F2hc, or only have 2
residues that serve as the catalytic nucleophile and the
acid/base, such as Thermus A4 beta-galactosidase with 2
Glu residues (GH42) and human alpha-galactosidase with 2
Asp residues (GH31). The family members are quite
extensive and include: alpha amylase,
maltosyltransferase, cyclodextrin glycotransferase,
maltogenic amylase, neopullulanase, isoamylase,
1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 569
Score = 31.9 bits (73), Expect = 0.24
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 27 VGFEGFVK-------KGEEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDA 79
+GFEG++ K + +TP Y+ F N N Y P W++ G V A
Sbjct: 176 IGFEGYLNTSAPFSLKEYKAEWKTPRRYVDFNFTNTYNETCEY----PRFWDEDGTPVTA 231
Query: 80 FIAGIGTG 87
+ TG
Sbjct: 232 DVTETLTG 239
>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 31.7 bits (72), Expect = 0.29
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 145 DEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVA 185
V +EE I + L KEG+ +SS A +++
Sbjct: 296 GGTAVVVNEEEIMAGEKLLAKEGIFAELSSAVVMPALLKLG 336
>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated.
Length = 338
Score = 31.6 bits (72), Expect = 0.31
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 9/61 (14%)
Query: 137 PVLDVAMLDEV------ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPEN 190
P L M+ + I VS E +E K LA K GLLV SS A AA + +
Sbjct: 269 PFLLDYMVKALSEYGECIVVSDNEIVEAWKELAKK-GLLVEYSS-ATVYAAYK-KYSVND 325
Query: 191 A 191
+
Sbjct: 326 S 326
>gnl|CDD|235830 PRK06558, PRK06558, V-type ATP synthase subunit K; Validated.
Length = 159
Score = 30.7 bits (70), Expect = 0.31
Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 167 GLLVGISSGAAAAAAIR-VAKRPENAGKLIVVIFPSAGERYLSTALFESI 215
GL IS G AAA I+ +AKRPE K I I + E Y A S
Sbjct: 105 GLFSAISQGKVAAAGIQILAKRPEEFTKGI--ILAAMVETYAILAFVVSF 152
>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain. Members of
this family are SAM dependent methyltransferases.
Length = 98
Score = 29.7 bits (67), Expect = 0.43
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
Query: 83 GIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV 116
G GTG R L E P ++ G++ S +A+
Sbjct: 4 GCGTGTL----LRALLEALPGLEYTGVDISPAAL 33
>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine
dehydrogenase I; Provisional.
Length = 819
Score = 30.9 bits (71), Expect = 0.62
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 76 KVDAFIAGIGT-GGT----VTGAGRFLKEKNPNIKVYGIEPSESAVLN 118
+D F+ G+G GG + +LK+KN +++V GI S +L+
Sbjct: 465 VLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLD 512
>gnl|CDD|232896 TIGR00260, thrC, threonine synthase. Involved in threonine
biosynthesis it catalyses the reaction
O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE +
ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor.
the enzyme is distantly related to the serine/threonine
dehydratases which are also pyridoxal-phosphate
dependent enzymes. the pyridoxal-phosphate binding site
is a Lys (K) residues present at residue 70 of the model
[Amino acid biosynthesis, Aspartate family].
Length = 328
Score = 30.4 bits (69), Expect = 0.73
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 150 VSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAK 186
VS EE +E KLLA +EG V S + AA +++ +
Sbjct: 269 VSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKLVE 305
>gnl|CDD|235288 PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.
Length = 397
Score = 30.4 bits (70), Expect = 0.77
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 150 VSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
++ +EA+E +LL+ EG++ + S A A A+++A ++IVV
Sbjct: 330 ITDDEALEAFQLLSRLEGIIPALESSHALAYALKLAPTL-GKDQIIVV 376
>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated.
Length = 397
Score = 30.3 bits (69), Expect = 0.82
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIR 183
VS EE ++ KLLA KEG+ V +S A+ A I+
Sbjct: 311 EAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIK 346
>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated.
Length = 319
Score = 30.1 bits (68), Expect = 0.83
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 150 VSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
S +E ++ ++LL EGL +S +A AA ++ K+ ++ VI
Sbjct: 266 FSDDEMVKYAELLRRMEGLNALPASASALAALVKYLKKNGVNDNVVAVI 314
>gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1
subunit/Transcription initiation factor TFIIB
[Transcription].
Length = 285
Score = 30.0 bits (68), Expect = 0.95
Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 153 EEAIETSKLL---ALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAG------ 203
E ET+ + A+ +GLL G S + AAA I A R + + I + G
Sbjct: 115 ESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALGVSKKEI 174
Query: 204 ---ERYLSTALFESIR 216
R L L I
Sbjct: 175 GRTYRLLVRELKLKIP 190
>gnl|CDD|237087 PRK12391, PRK12391, tryptophan synthase subunit beta; Reviewed.
Length = 427
Score = 29.4 bits (67), Expect = 1.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 146 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIF 199
E E E + L A EG++ S A AAAI A + + G+ V++F
Sbjct: 355 EARAYPQTEVFEAAVLFARTEGIVPAPESSHAIAAAIDEALKAKEEGEEKVILF 408
>gnl|CDD|224269 COG1350, COG1350, Predicted alternative tryptophan synthase
beta-subunit (paralog of TrpB) [General function
prediction only].
Length = 432
Score = 29.7 bits (67), Expect = 1.4
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 146 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGER 205
E EE E + L A EG++ S A AAI A + G+ V++F +G
Sbjct: 356 EARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEALKAREEGEEKVILFNLSGHG 415
Query: 206 YL 207
L
Sbjct: 416 LL 417
>gnl|CDD|235084 PRK02901, PRK02901, O-succinylbenzoate synthase; Provisional.
Length = 327
Score = 29.2 bits (66), Expect = 1.8
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 13/46 (28%)
Query: 138 VLDVA-MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAI 182
LD+A + + VSS A++TS VGI++G A AAA+
Sbjct: 224 ALDIAEQIGLPVVVSS--ALDTS----------VGIAAGLALAAAL 257
>gnl|CDD|236013 PRK07409, PRK07409, threonine synthase; Validated.
Length = 353
Score = 29.0 bits (66), Expect = 2.0
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 150 VSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIV 196
V+ EE +E +LLA KEG+ +S A+ A ++ + + G +V
Sbjct: 267 VTDEEILEAYRLLARKEGVFCEPASAASVAGLLKAIRAGKIPEGSTVV 314
>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
Length = 331
Score = 29.0 bits (66), Expect = 2.1
Identities = 33/115 (28%), Positives = 47/115 (40%), Gaps = 25/115 (21%)
Query: 71 NDSGGKVDAFIAGIGTGGTVTG--AGRFLKEKNPNIKVYGI------EPSESAVLNGGQP 122
+ G DA + G+GGT G AG L P+I V G+ E V
Sbjct: 178 AEGGVDFDAVVVASGSGGTHAGLAAG--LAALGPDIPVIGVTVSRSAAEQEPKVAK---- 231
Query: 123 GKHLIQG----IGAGVIPPVLDVAMLDEVI----TVSSEEAIETSKLLALKEGLL 169
L Q +G P D+ + D+ + V ++E +E KLLA EG+L
Sbjct: 232 ---LAQATAELLGLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGIL 283
>gnl|CDD|233338 TIGR01275, ACC_deam_rel, pyridoxal phosphate-dependent enzymes,
D-cysteine desulfhydrase family. This model represents
a family of pyridoxal phosphate-dependent enzymes
closely related to (and often designated as putative
examples of) 1-aminocyclopropane-1-carboxylate
deaminase. It appears that members of this family
include both D-cysteine desulfhydrase (EC 4.4.1.15) and
1-aminocyclopropane-1-carboxylate deaminase (EC
3.5.99.7).
Length = 318
Score = 28.6 bits (64), Expect = 2.5
Identities = 29/129 (22%), Positives = 54/129 (41%), Gaps = 7/129 (5%)
Query: 76 KVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGGQ---PGKHLIQGIGA 132
K D+ + G+GGT+ G L P++++ G+ S + + + +G+
Sbjct: 176 KFDSIVVASGSGGTIAGLSLGLSHLMPDVELVGVTVSRFVADQTDKFVNLVQAIAEGLEL 235
Query: 133 GVIP--PVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVG-ISSGAAAAAAIRVAKRPE 189
V P+ D +SE E K +A EG+++ + +G A I ++ E
Sbjct: 236 TVSAVIPLWDDYFGPGYGVPTSEGM-EIVKKVASLEGIILDPVYTGKAFYGLIDGIRKKE 294
Query: 190 NAGKLIVVI 198
K I+ I
Sbjct: 295 FGDKPILFI 303
>gnl|CDD|119177 pfam10657, RC-P840_PscD, Photosystem P840 reaction centre protein
PscD. The photosynthetic reaction centres (RCs) of
aerotolerant organisms contain a heterodimeric core,
built up of two strongly homologous polypeptides each of
which contributes five transmembrane peptide helices to
hold a pseudo-symmetric double set of redox components.
Two molecules of PscD are housed within a subunit. PscD
may be involved in stabilising the PscB component since
it is found to co-precipitate with FMO
(Fenna-Mathews-Olson BChl a-protein) and PscB. It may
also be involved in the interaction with ferredoxin.
Length = 144
Score = 27.9 bits (62), Expect = 2.9
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 171 GISSGAAAAAA----IRVAKRPENAGKLIVVIFPSAGERYLS 208
G SG AA A I AKR + GKL + I P++G R LS
Sbjct: 21 GPWSGNAAHKAEKYFITSAKR-DRNGKLQITISPASGRRKLS 61
>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated.
Length = 394
Score = 28.4 bits (64), Expect = 3.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 148 ITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIR 183
I VS + + + LA +EGL A AAA +
Sbjct: 324 IAVSDDAILAAQRELAREEGLFACPEGAATFAAARQ 359
>gnl|CDD|106331 PRK13373, PRK13373, putative dioxygenase; Provisional.
Length = 344
Score = 28.1 bits (62), Expect = 3.7
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 7/51 (13%)
Query: 67 PEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP----NIKVYGIEPSE 113
P WNDS + DAF+A + T G+ + EK+P ++ Y IE +E
Sbjct: 194 PPFWNDSSPEADAFLARMKAFQT---HGKSVLEKDPHLLRDLAAYEIEMAE 241
>gnl|CDD|239626 cd03569, VHS_Hrs_Vps27p, VHS domain family, Hrs and Vps27p
subfamily; composed of Hrs (Hepatocyte growth
factor-regulated tyrosine kinase substrate) and its
yeast homolog Vps27p (vacuolar protein sorting). The VHS
domain, an essential part of Hrs/Vps27p, has a
superhelical structure similar to the structure of ARM
(Armadillo) repeats and is present at the N-termini of
proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p,
and EEA1) zinc finger domain C-terminal to VHS, as well
as two coiled-coil domains. Hrs has been proposed to
play a role in at least three vesicle trafficking
events: exocytosis, endocytosis, and endosome to
lysosome trafficking. Hrs is involved in promoting rapid
recycling of endocytosed signaling receptors to the
plasma membrane.
Length = 142
Score = 27.2 bits (61), Expect = 4.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 97 LKEKNPNIKVYGIEPSESAVLNGGQP 122
L KNPN+++Y + ES V N G
Sbjct: 50 LLSKNPNVQLYALLLLESCVKNCGTH 75
>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional.
Length = 322
Score = 28.0 bits (63), Expect = 4.2
Identities = 41/156 (26%), Positives = 58/156 (37%), Gaps = 30/156 (19%)
Query: 64 TTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNG 119
T G EI V + + GG +G +K P I+V G+ A L
Sbjct: 156 TIGLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAA 214
Query: 120 GQP---------GKHLIQGIGAGVIPPVLD--------VAMLDEVITVSSEEAIETSKLL 162
G+P L GIG LD A+LD+V+ + E I
Sbjct: 215 GRPVQVEEVPTLADSLGGGIG-------LDNRYTFAMCRALLDDVVLL-DEAEIAAGIRH 266
Query: 163 ALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
A +E LV +GA AA+ K G ++VV+
Sbjct: 267 AYREERLVVEGAGAVGIAALLAGKIAARDGPIVVVV 302
>gnl|CDD|221659 pfam12597, DUF3767, Protein of unknown function (DUF3767). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 112 and 199 amino
acids in length.
Length = 119
Score = 26.9 bits (60), Expect = 4.9
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 78 DAFIAGIGTGGTVTGAGRFLKEKNP 102
D+ + G G G V G RFL KN
Sbjct: 43 DSLLTGFGAGFGV-GGVRFLIGKNI 66
>gnl|CDD|220738 pfam10411, DsbC_N, Disulfide bond isomerase protein N-terminus.
This is the N-terminal domain of the disulfide bond
isomerase DsbC. The whole molecule is V-shaped, where
each arm is a DsbC monomer of two domains linked by a
hinge; and the N-termini of each monomer join to form
the dimer interface at the base of the V, so are vital
for dimerisation. DsbC is required for disulfide bond
formation and functions as a disulfide bond isomerase
during oxidative protein-folding in bacterial periplasm.
It also has chaperone activity.
Length = 56
Score = 25.5 bits (57), Expect = 5.8
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 10/43 (23%)
Query: 97 LKEKNPNIKVYGIEPSESA----VLNGGQP------GKHLIQG 129
LK+ P +KV ++PS V+ GG GK+LIQG
Sbjct: 5 LKKLLPGLKVESVKPSPIPGLYEVVTGGGVLYVDEDGKYLIQG 47
>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB. Members
of this protein family are EutB, a predicted
arylmalonate decarboxylase found in a conserved ectoine
utilization operon of species that include Sinorhizobium
meliloti 1021 (where it is known to be induced by
ectoine), Mesorhizobium loti, Silicibacter pomeroyi,
Agrobacterium tumefaciens, and Pseudomonas putida.
Members of this family resemble threonine dehydratases.
Length = 317
Score = 27.5 bits (61), Expect = 5.9
Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 16/126 (12%)
Query: 87 GGTVTGAGRFLKEKNPNIKVYGIEPSESAV----LNGGQP---------GKHLIQGIG-A 132
GG +G +K P+ +V G+ A L G+P L GIG
Sbjct: 178 GGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLD 237
Query: 133 GVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAG 192
+ + A+LDE++ VS E I A E + +GA AA+ +A + +N G
Sbjct: 238 NRVTFAMCKALLDEIVLVSEAE-IAAGIRHAYAEEREIVEGAGAVGIAAL-LAGKIKNPG 295
Query: 193 KLIVVI 198
V++
Sbjct: 296 PCAVIV 301
>gnl|CDD|184174 PRK13602, PRK13602, putative ribosomal protein L7Ae-like;
Provisional.
Length = 82
Score = 25.9 bits (57), Expect = 6.3
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 140 DVAMLDEVITVSSEEAIETSKLLALKE-GLLVGISSGAAAAAAIR 183
D + ++V +++E+ + SK+ ++K+ G GI GAAA A I+
Sbjct: 38 DPRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAVAIIK 82
>gnl|CDD|214336 CHL00018, rpoC1, RNA polymerase beta' subunit.
Length = 663
Score = 27.6 bits (62), Expect = 6.7
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 36 GEEILNRTPNGYILGQFENPANPEIHYETTGPE 68
E IL PNG I+G+ P IHY+T PE
Sbjct: 24 AERIL---PNGEIVGEVTKPYT--IHYKTNKPE 51
>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional.
Length = 338
Score = 27.4 bits (61), Expect = 6.8
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 68 EIWNDSGGKVDAFIAGIGTGGTVTG---AGRFLKEKNPNIKVYGIEP 111
E G DA A G GG ++G A + +P + G EP
Sbjct: 163 EALQQLGFSPDAIFASCGGGGLISGTYLAKELI---SPTSLLIGSEP 206
>gnl|CDD|233357 TIGR01322, scrB_fam, sucrose-6-phosphate hydrolase. [Energy
metabolism, Biosynthesis and degradation of
polysaccharides].
Length = 445
Score = 27.3 bits (61), Expect = 7.2
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 30 EGFVKKGEEILNRTPNGYILGQFENPANPE 59
+G G + N NGYI+GQ + PE
Sbjct: 225 QGLDASGYDYQNIYQNGYIVGQL-DYEAPE 253
>gnl|CDD|185319 PRK15421, PRK15421, DNA-binding transcriptional regulator MetR;
Provisional.
Length = 317
Score = 27.3 bits (60), Expect = 7.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 VGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
+GF FV+K + L TP G IL Q N P+I
Sbjct: 44 LGFRLFVRKSQP-LRFTPQGEILLQLANQVLPQI 76
>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent
methyltransferase [General function prediction only].
Length = 227
Score = 26.9 bits (60), Expect = 8.6
Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 8/38 (21%)
Query: 84 IGTGGTVTGAGRFLKE---KNPNIKVYGIEPSESAVLN 118
IG G G FL E KNP GIE V
Sbjct: 55 IGFGM-----GEFLVEMAKKNPEKNFLGIEIRVPGVAK 87
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This family
contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 26.6 bits (59), Expect = 9.0
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 169 LVGISSGAAAAAAIRVAKRPENAGKLIVV 197
LVG S G A A A A+RPE L+++
Sbjct: 69 LVGHSLGGAVALAA-AARRPERVAGLVLI 96
>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily. This
subfamily of the AAA family ATPases includes two members
each from three archaeal species. It also includes yeast
CDC48 (cell division control protein 48) and the human
ortholog, transitional endoplasmic reticulum ATPase
(valosin-containing protein). These proteins in
eukaryotes are involved in the budding and transfer of
membrane from the transitional endoplasmic reticulum to
the Golgi apparatus.
Length = 733
Score = 27.2 bits (60), Expect = 9.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 158 TSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
T+ L ++ G V I G + AI RP++ G+ I+ +
Sbjct: 25 TAARLGVEPGDFVEIEKGDRSVVAIVWPLRPDDEGRGIIRM 65
>gnl|CDD|218484 pfam05185, PRMT5, PRMT5 arginine-N-methyltransferase. The human
homologue of yeast Skb1 (Shk1 kinase-binding protein 1)
is PRMT5, an arginine-N-methyltransferase. These
proteins appear to be key mitotic regulators. They play
a role in Jak signalling in higher eukaryotes.
Length = 445
Score = 26.8 bits (60), Expect = 9.8
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 80 FIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117
+ G G G V A + +E +K+Y +E + +AV+
Sbjct: 191 LVVGAGRGPLVDRALKAAEETGRKVKIYAVEKNPNAVV 228
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.314 0.137 0.387
Gapped
Lambda K H
0.267 0.0730 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,384,331
Number of extensions: 1256272
Number of successful extensions: 1441
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1393
Number of HSP's successfully gapped: 127
Length of query: 225
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 132
Effective length of database: 6,812,680
Effective search space: 899273760
Effective search space used: 899273760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.7 bits)