RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 027277
(225 letters)
>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 320
Score = 204 bits (519), Expect = 7e-66
Identities = 151/225 (67%), Positives = 188/225 (83%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP++ S ERRIIL A G E+ L DPA G +G + K EEIL +TPNGY+L QFENPANP+I
Sbjct: 95 MPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKI 154
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HYETTGPEIW +GGK+D F++GIGTGGT+TGAG++LKE+N N+K+YG+EP ESA+L+GG
Sbjct: 155 HYETTGPEIWKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILSGG 214
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+PG H IQGIGAG IP VL+V ++DEV+ VSS+E+I+ ++ LALKEGLLVGISSGAAAAA
Sbjct: 215 KPGPHKIQGIGAGFIPSVLNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAA 274
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALFESIRHEVENMPID 225
AI++A+RPENAGKL V IFPS GERYLST LF++ R E E M +
Sbjct: 275 AIKLAQRPENAGKLFVAIFPSFGERYLSTVLFDATRKEAEAMTFE 319
>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermotoga maritima [TaxId: 2336]}
Length = 293
Score = 197 bits (502), Expect = 1e-63
Identities = 108/210 (51%), Positives = 144/210 (68%), Gaps = 3/210 (1%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP T S+ERR +L+ LGAE+ L +G +G V+K E ++R ++L QFENP N
Sbjct: 85 MPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALE-ISRETGAHMLNQFENPYNVYS 143
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPN-IKVYGIEPSESAVLNG 119
H TTGPEI ++DAF+AG+GTGGT++G GR LK N +K+ +EP++S VL+G
Sbjct: 144 HQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLSG 203
Query: 120 GQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAA 179
GQPGKH IQGIGAG +P +LD +++DEVITV EEA E ++ LA KEGLLVGISSGA A
Sbjct: 204 GQPGKHAIQGIGAGFVPKILDRSVIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVA 263
Query: 180 AAIRVAKRPENAGKLIVVIFPSAGERYLST 209
AA++VA++ +V + P ERYLS
Sbjct: 264 AALKVAQKLG-PDARVVTVAPDHAERYLSI 292
>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine
synthase) {Thermus thermophilus [TaxId: 274]}
Length = 302
Score = 172 bits (437), Expect = 9e-54
Identities = 81/172 (47%), Positives = 115/172 (66%), Gaps = 1/172 (0%)
Query: 41 NRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK 100
++ QF+NPAN HYETTGPE++ G++DAF+ G GTGGT+TG GR+LKE+
Sbjct: 131 KEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTITGVGRYLKER 190
Query: 101 NPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160
P++KV +EP+ S VL+GG+ G+H QG+G G IP LD+++LD VI V E+A ++
Sbjct: 191 IPHVKVIAVEPARSNVLSGGKMGQHGFQGMGPGFIPENLDLSLLDGVIQVWEEDAFPLAR 250
Query: 161 LLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212
LA +EGL +G+SSG AA++VA+ GK + I P G +YLST L+
Sbjct: 251 RLAREEGLFLGMSSGGIVWAALQVARE-LGPGKRVACISPDGGWKYLSTPLY 301
>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine
synthase) {Haemophilus influenzae [TaxId: 727]}
Length = 310
Score = 172 bits (437), Expect = 1e-53
Identities = 110/206 (53%), Positives = 139/206 (67%), Gaps = 8/206 (3%)
Query: 15 ALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYI-LGQFENPANPEIHYETTGPEIWNDS 73
LG + L + A G +G + K EEI+ P+ Y+ L QFENPANP+IH ETTGPEIW D+
Sbjct: 105 GLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDT 164
Query: 74 GGKVDAFIAGIGTGGTVTGAGRFLKE-KNPNIKVYGIEPSESAVLNGGQPGK------HL 126
GKVD +AG+GTGG++TG R +K I +EP ES V++ G+ H
Sbjct: 165 DGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKPGPHK 224
Query: 127 IQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAK 186
IQGIGAG IP LD++++D V TV S+ A+ T++ L +EG+L GISSGAA AAA R+AK
Sbjct: 225 IQGIGAGFIPKNLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRLAK 284
Query: 187 RPENAGKLIVVIFPSAGERYLSTALF 212
PE A KLIVVI PSA ERYLSTALF
Sbjct: 285 LPEFADKLIVVILPSASERYLSTALF 310
>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 355
Score = 159 bits (402), Expect = 6e-48
Identities = 79/221 (35%), Positives = 120/221 (54%), Gaps = 9/221 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGF---EGFVKKGEEILNRTPNGYILGQFENPAN 57
MP S E+ +LRALGAE+ F E V + N PN +IL Q+ N +N
Sbjct: 127 MPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASN 186
Query: 58 PEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117
P HY+TT EI GK+D +A +GTGGT+TG R LKEK P ++ G++P S +
Sbjct: 187 PLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILA 246
Query: 118 NGGQPGK-----HLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGI 172
+ + + ++GIG IP VLD ++D+ + EEA +++L +EGLL G
Sbjct: 247 EPEELNQTEQTTYEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGG 306
Query: 173 SSGAAAAAAIRVAKRPENAGKLIVVIFPSAGERYLSTALFE 213
S+G+ A A++ A+ + G+ VVI P + Y++ L +
Sbjct: 307 SAGSTVAVAVKAAQELQ-EGQRCVVILPDSVRNYMTKFLSD 346
>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine
synthase) {Salmonella typhimurium [TaxId: 90371]}
Length = 302
Score = 157 bits (397), Expect = 8e-48
Identities = 103/212 (48%), Positives = 143/212 (67%), Gaps = 9/212 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNG-YILGQFENPANPE 59
MP T SIERR +L+ALGA + L + A G +G ++K EEI+ P +L QF NPANPE
Sbjct: 91 MPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPE 150
Query: 60 IHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVY--GIEPSESAVL 117
IH +TTGPEIW D+ G+VD FI+G+GTGGT+TG R++K + +EP++S V+
Sbjct: 151 IHEKTTGPEIWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVI 210
Query: 118 NGG------QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVG 171
+PG H IQGIGAG IP LD+ ++D+V+ +++EEAI T++ L +EG+L G
Sbjct: 211 AQALAGEEIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAG 270
Query: 172 ISSGAAAAAAIRVAKRPENAGKLIVVIFPSAG 203
ISSGAA AAA+++ + K IVVI PS+G
Sbjct: 271 ISSGAAVAAALKLQEDESFTNKNIVVILPSSG 302
>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine
synthase) {Escherichia coli, isoform B (CysM) [TaxId:
562]}
Length = 292
Score = 140 bits (352), Expect = 3e-41
Identities = 80/212 (37%), Positives = 121/212 (57%), Gaps = 10/212 (4%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP S ERR +RA GAE+ L G EG E+ G +L QF NP NP
Sbjct: 90 MPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEM-ANRGEGKLLDQFNNPDNPYA 148
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
HY TTGPEIW +GG++ F++ +GT GT+TG RF++E++ + + G++P E + + G
Sbjct: 149 HYTTTGPEIWQQTGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPGI 208
Query: 121 QPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAA 180
+ +P + + +++DEV+ + +A T + LA++EG+ G+SSG A A
Sbjct: 209 RRWPT-------EYLPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAG 261
Query: 181 AIRVAKRPENAGKLIVVIFPSAGERYLSTALF 212
A+RVAK N ++V I G+RYLST +F
Sbjct: 262 ALRVAK--ANPDAVVVAIICDRGDRYLSTGVF 291
>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine
synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}
Length = 382
Score = 118 bits (296), Expect = 4e-32
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 12/212 (5%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
+P +++ R LGA+V + DP + ++ + QF N AN E
Sbjct: 174 LPGAAEEFGKLLPRLLGAQVIV-DPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEA 232
Query: 61 HYETTGPEIWNDS---GGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVL 117
H T EI+ S G + +GT G ++ A +L+ +P+I+ ++P++ +
Sbjct: 233 HMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSI 292
Query: 118 NGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAA 177
G + + + + +LD++ + V+ EEA+E +A +GL++G S GAA
Sbjct: 293 PGIRRVETGM------LWINMLDIS--YTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAA 344
Query: 178 AAAAIRVAKRPENAGKLIVVIFPSAGERYLST 209
A + A + VV+ P G +YLS
Sbjct: 345 VKALAKKAAEGDLEPGDYVVVVPDTGFKYLSL 376
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 107 bits (267), Expect = 2e-28
Identities = 48/225 (21%), Positives = 74/225 (32%), Gaps = 22/225 (9%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP+ + + +R G EV L L++ + F++P I
Sbjct: 105 MPTATADIKVDAVRGFGGEVLLHGANFDEAKAKA---IELSQQQGFTWVPPFDHP--MVI 159
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
+ T +D +G GG G +K+ P IKV +E +SA L
Sbjct: 160 AGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAA 219
Query: 121 QPGKHLIQ---------GIGAGVIPPV---LDVAMLDEVITVSSEEAIETSKLLALKEGL 168
H + G+ I L LD++ITV S+ K L
Sbjct: 220 LDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRA 279
Query: 169 LVGISSGAAAAAAIRVAKRPENAGKLIVVIFPSA-----GERYLS 208
+ S A A + G+ + I A G RY+S
Sbjct: 280 VAEPSGALALAGMKKYIALHNIRGERLAHILSGANVNFHGLRYVS 324
>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 386
Score = 93.8 bits (232), Expect = 4e-23
Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 35/202 (17%)
Query: 44 PNGYILGQFENPANPEIHYETTGPEI---WNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK 100
G ++G P G E ++ G++ I GG+ +
Sbjct: 182 LIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN 241
Query: 101 NPNIKVYGIEPSES--------AVLNGGQPGK-----------------------HLIQG 129
+ +K+ G+E A LN GQ G +
Sbjct: 242 DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDY 301
Query: 130 IGAGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE 189
G G L E +TV+ EEA++ L+ EG++ + S A A A+++AK
Sbjct: 302 PGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKE-M 360
Query: 190 NAGKLIVVIFPSAGERYLSTAL 211
+ ++I+V G++ L L
Sbjct: 361 SRDEIIIVNLSGRGDKDLDIVL 382
>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14
(SPCC320.14, SPCC330.15c) {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 318
Score = 91.5 bits (226), Expect = 1e-22
Identities = 40/210 (19%), Positives = 82/210 (39%), Gaps = 19/210 (9%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGQFENPANPEI 60
MP + + G +V + D + K +E ++ I+ +++ +
Sbjct: 99 MPLDAPEAKVAATKGYGGQVIMYDR--YKDDREKMAKE-ISEREGLTIIPPYDH--PHVL 153
Query: 61 HYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLNGG 120
+ T + + G +DA +G GG ++G+ + PN +VYG+EP
Sbjct: 154 AGQGTAAKELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQS 213
Query: 121 QPGKHLIQGIG------------AGVIPPVLDVAMLDEVITVSSEEAIETSKLLALKEGL 168
++ G + +D+++TVS EE I+ K A + +
Sbjct: 214 FRKGSIVHIDTPKTIADGAQTQHLGNYTFSIIKEKVDDILTVSDEELIDCLKFYAARMKI 273
Query: 169 LVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
+V + + AAA + ++ + K I +I
Sbjct: 274 VVEPTGCLSFAAARAMKEKLK--NKRIGII 301
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 83.9 bits (206), Expect = 7e-20
Identities = 28/173 (16%), Positives = 59/173 (34%), Gaps = 18/173 (10%)
Query: 41 NRTPNGYILGQFENPANPEIHYETTGPEIW--NDSGGKVDAFIAGIGTGGTVTGAGRFLK 98
++ F++P + G A +A +G GG + G +K
Sbjct: 131 QEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVK 190
Query: 99 EKNPNIKVYGIEPSESA-------------VLNGGQPGKHLIQGIGAGVIPPVLDVAMLD 145
+P V G+EP + + + ++ + G + +D
Sbjct: 191 ALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGERTFPILRERVD 250
Query: 146 EVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVVI 198
++TVS E +E +LL + +V + AA + R + + ++
Sbjct: 251 GILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL---PQTLALL 300
>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Pseudomonas sp., strain ACP [TaxId: 306]}
Length = 338
Score = 79.3 bits (194), Expect = 4e-18
Identities = 28/173 (16%), Positives = 48/173 (27%), Gaps = 14/173 (8%)
Query: 40 LNRTPNGYILGQFENPANPEIHYETTGPEIWNDS-----GGKVDAFIAGIGTGGTVTGAG 94
+ +P G + G K D + TG T G
Sbjct: 148 VRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMV 207
Query: 95 RFLKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPP-------VLDVAMLDEV 147
+V G++ S Q + Q + VLD
Sbjct: 208 VGFAADGRADRVIGVDASAKPAQTREQITRIARQTAEKVGLERDIMRADVVLDERFAGPE 267
Query: 148 ITVSSEEAIETSKLLALKEGLLVG-ISSGAAAAAAIRVAKRPE-NAGKLIVVI 198
+ +E +E +L A EG+L + G + I + + E G ++
Sbjct: 268 YGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEMVRNGEFPEGSRVLYA 320
>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 325
Score = 77.4 bits (189), Expect = 2e-17
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 5/162 (3%)
Query: 41 NRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEK 100
Y++ + Y EI S K D+ + G+GGT+ G L
Sbjct: 146 REGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSIL 205
Query: 101 NPNIKVYGIEPSESAVLNGGQPGKHLIQGI---GAGVIPPVLDVAMLDEVITVSSEEAIE 157
N +I+ GI + + + + G V + E +
Sbjct: 206 NEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGVKVEVRPELYDYSFGEYGKITGEVAQ 265
Query: 158 TSKLLALKEGLLVG-ISSGAAAAAAIRVAKRPENAGKLIVVI 198
+ + +EG+++ + +G A + +A++ E G+ I+ I
Sbjct: 266 IIRKVGTREGIILDPVYTGKAFYGLVDLARKGE-LGEKILFI 306
>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase
{Yeast (Hansenula saturnus) [TaxId: 4906]}
Length = 341
Score = 72.8 bits (177), Expect = 8e-16
Identities = 30/223 (13%), Positives = 54/223 (24%), Gaps = 25/223 (11%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKG---------------EEILNRTPN 45
I +G + V + E
Sbjct: 99 QEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKP 158
Query: 46 GYILGQFENPANPEIHY---ETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKNP 102
I + + + G K D + TG T G + +
Sbjct: 159 YPIPAGCSEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGR 218
Query: 103 NIKVYGIEPSESA-----VLNGGQPGKHLIQGIGAGVIPPVLDVAMLDEVITVSSEEAIE 157
V I+ S ++ + G+ LD V +E IE
Sbjct: 219 QDDVIAIDASFTSEKTKEQTLRIANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIE 278
Query: 158 TSKLLALKEGLLVG-ISSGAAAAAAIRVAKRPE-NAGKLIVVI 198
+ A +EG+L + G + I + K G ++ +
Sbjct: 279 AIRTCAEQEGVLTDPVYEGKSMQGLIALIKEDYFKPGANVLYV 321
>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus
[TaxId: 274]}
Length = 351
Score = 69.0 bits (167), Expect = 2e-14
Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 15/175 (8%)
Query: 51 QFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVT------GAGRFLKEKNPNI 104
+ +T E+ ++ G +G G +T A L +
Sbjct: 153 VNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITAHWMGYKAYHALGKAKRLP 212
Query: 105 KVYGIEPSESAVLNGGQPGKHL--------IQGIGAGVIPPVLDVAMLDEVITVSSEEAI 156
++ G + + +A L G+P + I + + V+ EE +
Sbjct: 213 RMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPASWQGAVRAKEESGGVIEAVTDEEIL 272
Query: 157 ETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVIFPSAGERYLSTA 210
+ LA +EG+ +S AA A ++ + +V+ G + +TA
Sbjct: 273 FAYRYLAREEGIFCEPASAAAMAGVFKLLREGRLEPESTVVLTLTGHGLKDPATA 327
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 68.7 bits (167), Expect = 2e-14
Identities = 39/241 (16%), Positives = 68/241 (28%), Gaps = 45/241 (18%)
Query: 1 MPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTP---------NGYILGQ 51
+R +GAEV G E L G G
Sbjct: 136 KDVERQSPNVFRMRLMGAEVIPVHS--GSATLKDACNEALRDWSGSYETAHYMLGTAAGP 193
Query: 52 FENPANPEIHYETTGPEIWN---DSGGKVDAFIAGIGTGGTVTGAGRFLKEKNPNIKVYG 108
P G E D G++ + GG+ + ++ + G
Sbjct: 194 HPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIG 253
Query: 109 IEPSESAV--------------------------LNGGQPGKHLIQGIGAGVIPPVLDVA 142
+EP + GQ + G A
Sbjct: 254 VEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHA 313
Query: 143 ML-----DEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPENAGKLIVV 197
L + ++++ +EA+E K L EG++ + S A A A+++ + +L+VV
Sbjct: 314 YLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVV 373
Query: 198 I 198
Sbjct: 374 N 374
>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 477
Score = 45.8 bits (107), Expect = 2e-06
Identities = 27/211 (12%), Positives = 54/211 (25%), Gaps = 30/211 (14%)
Query: 44 PNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRFLKEKN-- 101
L N E + D I G G + + K
Sbjct: 245 ELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQEL 304
Query: 102 ------PNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDVA------------- 142
P + + L+ K + + +
Sbjct: 305 GLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPVSIDRAVYALK 364
Query: 143 MLDEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVAKRPE-NAGKLIVVI--- 198
+ ++ ++EE + + A G+ + +G A A ++ + VV+
Sbjct: 365 KCNGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNQGVIAPTDRTVVVSTA 424
Query: 199 ----FPSAGERYLSTALFESIRHEVENMPID 225
F + Y S A+ + N P+D
Sbjct: 425 HGLKFTQSKIDYHSNAIPDMACR-FSNPPVD 454
>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 319
Score = 42.9 bits (99), Expect = 1e-05
Identities = 26/186 (13%), Positives = 48/186 (25%), Gaps = 19/186 (10%)
Query: 37 EEILNRTPNGYILGQFENPANPEIHYETTGPEIWNDSGGKVDAFIAGIGTGGTVTGAGRF 96
+ + P + F++P E H ++ G G
Sbjct: 118 KALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGL 177
Query: 97 LKEKNPNIKVYGIEPSESAVLNGGQPGKHLIQGIGAGVIPPVLDV------------AML 144
+ ++ V +E + + L+ + L V
Sbjct: 178 QECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHP 237
Query: 145 DEVITVSSEEAIETSKLLALKEGLLVGISSGAAAAAAIRVA-------KRPENAGKLIVV 197
+S +EA+ + E +LV + GAA AA +VV
Sbjct: 238 IFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVV 297
Query: 198 IFPSAG 203
I
Sbjct: 298 IVCGGS 303
>d1dgna_ a.77.1.3 (A:) Iceberg {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 25.2 bits (55), Expect = 3.2
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 126 LIQGIGAGVIPPVLDVAMLDEVITVSSEEAIETSK 160
I +GAG I +LD + DEVI+ +
Sbjct: 12 FIHSVGAGTINALLDCLLEDEVISQEDMNKVRDEN 46
>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex
aeolicus [TaxId: 63363]}
Length = 171
Score = 25.3 bits (54), Expect = 4.8
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSE 113
+ +G G + L+ K+YG + +
Sbjct: 4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP 36
>d1nbwb_ c.51.3.2 (B:) Glycerol dehydratase reactivase, beta subunit
{Klebsiella pneumoniae [TaxId: 573]}
Length = 113
Score = 24.3 bits (53), Expect = 8.4
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 124 KHLIQGIGAGVIPPVLDVAMLDEVITVS-SEEAIETSKLLALKEGLLVGISSGAAAAAAI 182
L G+ +P + IT +A L A L VGI A+ A+
Sbjct: 19 NELCWGLEEQGVPC--------QTITYDGGGDAAALGALAARSSPLRVGIGLSASGEIAL 70
Query: 183 RVAKRPENA 191
A+ P +A
Sbjct: 71 THAQLPADA 79
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate
isomerase (RpiA), catalytic domain {Escherichia coli
[TaxId: 562]}
Length = 124
Score = 24.1 bits (52), Expect = 9.2
Identities = 9/38 (23%), Positives = 11/38 (28%)
Query: 81 IAGIGTGGTVTGAGRFLKEKNPNIKVYGIEPSESAVLN 118
I G+GTG T L I+ S
Sbjct: 1 IVGVGTGSTAAHFIDALGTMKGQIEGAVSSSDASTEKL 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.314 0.137 0.387
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 885,491
Number of extensions: 44325
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 26
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (24.2 bits)