Query 027280
Match_columns 225
No_of_seqs 160 out of 1304
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:36:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0810 SNARE protein Syntaxin 100.0 3.7E-47 8.1E-52 329.7 25.6 217 1-222 80-296 (297)
2 COG5074 t-SNARE complex subuni 100.0 1.4E-32 3.1E-37 226.1 22.7 170 43-213 96-268 (280)
3 KOG0811 SNARE protein PEP12/VA 100.0 2.3E-27 5E-32 203.0 23.2 176 39-217 87-265 (269)
4 KOG0809 SNARE protein TLG2/Syn 99.9 2.2E-26 4.8E-31 195.7 18.6 195 5-218 106-303 (305)
5 COG5325 t-SNARE complex subuni 99.9 4.8E-20 1E-24 155.9 22.7 92 124-215 187-278 (283)
6 KOG0812 SNARE protein SED5/Syn 99.8 1.3E-16 2.8E-21 135.6 21.0 198 2-205 75-299 (311)
7 cd00179 SynN Syntaxin N-termin 99.6 8.5E-15 1.8E-19 115.9 12.2 104 1-109 46-149 (151)
8 PF05739 SNARE: SNARE domain; 99.5 1.1E-13 2.3E-18 94.1 10.1 63 129-191 1-63 (63)
9 cd00193 t_SNARE Soluble NSF (N 99.4 3.5E-12 7.5E-17 85.2 8.4 59 128-186 2-60 (60)
10 smart00397 t_SNARE Helical reg 99.3 4.6E-11 1E-15 81.0 9.1 64 123-186 3-66 (66)
11 KOG3202 SNARE protein TLG1/Syn 99.1 3.8E-08 8.1E-13 83.3 22.3 156 39-215 76-234 (235)
12 smart00503 SynN Syntaxin N-ter 98.6 2.4E-07 5.1E-12 69.9 8.3 70 1-75 48-117 (117)
13 KOG3894 SNARE protein Syntaxin 98.5 1.6E-06 3.5E-11 75.4 11.9 87 123-209 223-309 (316)
14 KOG0860 Synaptobrevin/VAMP-lik 98.1 8.7E-05 1.9E-09 55.9 11.6 85 130-216 27-114 (116)
15 PF00957 Synaptobrevin: Synapt 98.0 0.00018 4E-09 51.9 11.9 49 132-180 3-51 (89)
16 KOG3385 V-SNARE [Intracellular 97.9 0.00011 2.3E-09 55.2 9.0 82 128-211 32-113 (118)
17 PF00804 Syntaxin: Syntaxin; 97.7 0.00011 2.4E-09 53.6 5.6 57 1-60 47-103 (103)
18 PF09753 Use1: Membrane fusion 97.1 0.017 3.8E-07 49.6 13.4 74 141-217 176-249 (251)
19 KOG0810 SNARE protein Syntaxin 96.8 0.1 2.2E-06 46.0 15.6 89 128-216 195-287 (297)
20 KOG0811 SNARE protein PEP12/VA 96.7 0.05 1.1E-06 47.2 12.6 93 129-221 170-266 (269)
21 PF14523 Syntaxin_2: Syntaxin- 96.5 0.023 5E-07 41.6 8.1 63 4-76 38-100 (102)
22 COG5074 t-SNARE complex subuni 96.4 0.065 1.4E-06 45.3 11.2 73 131-204 191-263 (280)
23 KOG1666 V-SNARE [Intracellular 96.0 0.73 1.6E-05 38.5 21.4 79 134-213 137-215 (220)
24 COG5325 t-SNARE complex subuni 96.0 0.17 3.7E-06 43.8 12.0 90 120-213 190-279 (283)
25 KOG3065 SNAP-25 (synaptosome-a 95.2 0.1 2.2E-06 45.4 8.0 56 130-185 216-271 (273)
26 PF00957 Synaptobrevin: Synapt 94.5 1.2 2.6E-05 31.8 12.3 25 121-145 20-44 (89)
27 KOG0809 SNARE protein TLG2/Syn 94.1 3 6.5E-05 36.6 14.1 203 3-217 61-299 (305)
28 PF05478 Prominin: Prominin; 93.4 9.7 0.00021 38.2 22.0 55 134-190 359-413 (806)
29 KOG2678 Predicted membrane pro 91.1 4.4 9.5E-05 34.2 10.8 89 128-219 146-240 (244)
30 PF03904 DUF334: Domain of unk 90.5 9.9 0.00021 32.2 12.9 48 168-215 121-168 (230)
31 PF03908 Sec20: Sec20; InterP 88.5 7.4 0.00016 28.0 12.2 43 154-197 30-72 (92)
32 PF10717 ODV-E18: Occlusion-de 88.2 0.69 1.5E-05 32.8 3.4 13 211-223 38-50 (85)
33 PF11166 DUF2951: Protein of u 87.9 8.6 0.00019 28.0 11.7 83 131-217 10-93 (98)
34 KOG0859 Synaptobrevin/VAMP-lik 86.5 1.3 2.8E-05 36.7 4.5 34 132-165 125-158 (217)
35 PF10779 XhlA: Haemolysin XhlA 81.4 14 0.00031 25.2 9.3 44 156-203 16-59 (71)
36 PF10717 ODV-E18: Occlusion-de 80.3 3 6.5E-05 29.7 3.8 27 197-223 27-53 (85)
37 PRK10884 SH3 domain-containing 75.8 46 0.00099 27.8 13.6 74 146-219 118-197 (206)
38 PF04102 SlyX: SlyX; InterPro 72.5 27 0.00059 23.7 7.0 49 132-180 4-52 (69)
39 PF09753 Use1: Membrane fusion 71.4 64 0.0014 27.5 10.5 88 124-214 154-243 (251)
40 PF00523 Fusion_gly: Fusion gl 71.0 6.6 0.00014 37.1 4.5 9 15-23 64-72 (490)
41 PF06789 UPF0258: Uncharacteri 69.2 0.92 2E-05 35.9 -1.2 14 179-192 115-128 (159)
42 KOG3251 Golgi SNAP receptor co 68.8 70 0.0015 26.9 20.0 54 155-209 152-205 (213)
43 PHA02975 hypothetical protein; 67.6 10 0.00022 25.9 3.7 20 189-208 37-56 (69)
44 PHA02844 putative transmembran 67.2 9.1 0.0002 26.6 3.4 11 194-204 46-56 (75)
45 PF02346 Vac_Fusion: Chordopox 67.1 34 0.00073 22.6 6.5 44 133-176 2-45 (57)
46 PF12352 V-SNARE_C: Snare regi 67.1 34 0.00073 22.6 10.2 56 133-188 9-64 (66)
47 PRK14762 membrane protein; Pro 66.7 10 0.00022 20.7 2.9 18 199-216 6-23 (27)
48 PRK04325 hypothetical protein; 66.1 41 0.00089 23.3 8.3 45 134-178 11-55 (74)
49 PRK10404 hypothetical protein; 65.8 52 0.0011 24.3 10.8 28 180-208 66-93 (101)
50 PF05957 DUF883: Bacterial pro 65.7 47 0.001 23.7 11.5 18 192-209 70-87 (94)
51 PF12911 OppC_N: N-terminal TM 64.0 19 0.0004 23.0 4.4 19 201-219 23-41 (56)
52 PRK10573 type IV pilin biogene 62.7 93 0.002 28.2 10.3 77 136-217 110-190 (399)
53 KOG0860 Synaptobrevin/VAMP-lik 62.2 67 0.0015 24.4 10.4 20 194-213 95-114 (116)
54 PF12669 P12: Virus attachment 62.0 7 0.00015 25.9 2.1 10 213-222 18-27 (58)
55 PHA03054 IMV membrane protein; 61.8 13 0.00029 25.5 3.4 10 195-204 47-56 (72)
56 PHA02819 hypothetical protein; 61.1 13 0.00029 25.5 3.3 9 195-203 45-53 (71)
57 PF04505 Dispanin: Interferon- 60.9 5.1 0.00011 28.4 1.4 30 179-208 49-78 (82)
58 PF09548 Spore_III_AB: Stage I 60.7 29 0.00062 27.8 5.9 27 182-208 139-166 (170)
59 KOG0812 SNARE protein SED5/Syn 60.6 1.2E+02 0.0026 26.8 10.3 64 125-188 213-276 (311)
60 PRK00295 hypothetical protein; 60.1 52 0.0011 22.4 7.9 46 133-178 6-51 (68)
61 PRK08307 stage III sporulation 60.1 30 0.00064 27.9 5.9 28 181-208 139-167 (171)
62 TIGR02833 spore_III_AB stage I 59.9 30 0.00065 27.9 5.9 28 181-208 138-166 (170)
63 PHA02650 hypothetical protein; 59.7 19 0.0004 25.4 3.9 9 194-202 47-55 (81)
64 PF03597 CcoS: Cytochrome oxid 58.8 14 0.0003 23.2 2.9 24 199-222 5-28 (45)
65 PF09889 DUF2116: Uncharacteri 58.5 30 0.00064 23.0 4.6 16 196-211 37-52 (59)
66 PRK10884 SH3 domain-containing 58.1 1.1E+02 0.0024 25.5 13.1 87 130-219 98-193 (206)
67 PF14992 TMCO5: TMCO5 family 57.9 1.3E+02 0.0029 26.4 12.7 55 123-177 121-175 (280)
68 PF09125 COX2-transmemb: Cytoc 57.4 23 0.0005 21.2 3.5 19 194-212 14-32 (38)
69 TIGR00847 ccoS cytochrome oxid 56.6 17 0.00036 23.5 3.1 24 199-222 6-29 (51)
70 PRK02793 phi X174 lysis protei 56.5 63 0.0014 22.2 7.9 47 132-178 8-54 (72)
71 PRK00736 hypothetical protein; 56.3 61 0.0013 22.0 7.9 46 133-178 6-51 (68)
72 PF11239 DUF3040: Protein of u 56.2 26 0.00056 24.6 4.4 19 160-178 9-27 (82)
73 PHA02692 hypothetical protein; 55.8 20 0.00043 24.7 3.5 9 194-202 43-51 (70)
74 KOG4331 Polytopic membrane pro 55.1 2.4E+02 0.0053 28.6 16.0 56 4-60 250-305 (865)
75 KOG4684 Uncharacterized conser 54.4 15 0.00033 30.9 3.3 29 193-222 207-235 (275)
76 KOG3065 SNAP-25 (synaptosome-a 54.1 54 0.0012 28.7 6.8 43 143-185 90-132 (273)
77 PF06143 Baculo_11_kDa: Baculo 53.2 21 0.00045 25.6 3.4 6 182-187 21-26 (84)
78 COG2443 Sss1 Preprotein transl 52.7 71 0.0015 21.7 5.8 28 164-191 3-30 (65)
79 PRK04406 hypothetical protein; 50.9 82 0.0018 21.9 7.9 47 132-178 11-57 (75)
80 PHA02673 ORF109 EEV glycoprote 50.7 16 0.00035 29.2 2.7 16 182-197 17-32 (161)
81 TIGR02302 aProt_lowcomp conser 49.5 1.7E+02 0.0038 29.8 10.4 22 144-165 621-642 (851)
82 PF06789 UPF0258: Uncharacteri 48.9 11 0.00024 29.9 1.6 31 186-216 125-155 (159)
83 PF06072 Herpes_US9: Alphaherp 48.7 48 0.001 22.1 4.3 14 177-190 9-22 (60)
84 TIGR02120 GspF general secreti 48.7 2.1E+02 0.0045 25.9 10.5 43 136-178 112-154 (399)
85 PRK13865 type IV secretion sys 48.6 64 0.0014 27.4 6.3 25 196-220 41-65 (229)
86 PRK10132 hypothetical protein; 48.2 1.1E+02 0.0025 22.7 11.4 16 194-209 85-100 (108)
87 PF06143 Baculo_11_kDa: Baculo 47.3 46 0.001 23.8 4.4 11 198-208 41-51 (84)
88 TIGR02120 GspF general secreti 47.1 2.2E+02 0.0047 25.7 10.2 41 137-178 316-356 (399)
89 PRK09400 secE preprotein trans 46.9 84 0.0018 21.0 5.4 47 167-213 5-51 (61)
90 PF04210 MtrG: Tetrahydrometha 46.2 96 0.0021 21.3 7.3 13 197-209 49-61 (70)
91 PRK02119 hypothetical protein; 45.5 99 0.0021 21.3 8.1 47 132-178 9-55 (73)
92 PF14812 PBP1_TM: Transmembran 45.4 1.1 2.4E-05 31.8 -4.0 13 190-202 61-73 (81)
93 PHA03240 envelope glycoprotein 45.3 20 0.00044 30.2 2.7 20 195-214 211-230 (258)
94 COG3352 FlaC Putative archaeal 45.3 1.6E+02 0.0034 23.5 8.7 66 119-184 73-139 (157)
95 PF01519 DUF16: Protein of unk 44.5 1.3E+02 0.0028 22.3 7.9 47 130-176 51-97 (102)
96 PF06667 PspB: Phage shock pro 44.0 35 0.00075 23.9 3.3 8 217-224 28-35 (75)
97 PHA02819 hypothetical protein; 43.0 49 0.0011 22.8 3.8 28 187-214 34-61 (71)
98 PF09164 VitD-bind_III: Vitami 42.8 35 0.00076 23.2 3.0 28 73-101 13-40 (68)
99 PHA03164 hypothetical protein; 42.7 51 0.0011 23.1 3.9 11 206-216 71-81 (88)
100 cd00193 t_SNARE Soluble NSF (N 42.7 83 0.0018 19.6 8.1 52 138-189 5-56 (60)
101 TIGR01478 STEVOR variant surfa 42.4 18 0.0004 31.7 2.1 24 55-79 66-90 (295)
102 COG3197 FixS Uncharacterized p 42.3 23 0.0005 23.4 2.1 22 201-222 8-29 (58)
103 KOG1693 emp24/gp25L/p24 family 42.1 1.2E+02 0.0027 25.3 6.7 24 196-219 177-200 (209)
104 PF01601 Corona_S2: Coronaviru 41.4 13 0.00028 35.9 1.1 54 154-212 510-564 (610)
105 PTZ00370 STEVOR; Provisional 41.1 20 0.00043 31.5 2.1 25 54-79 64-89 (296)
106 PF14575 EphA2_TM: Ephrin type 40.6 23 0.00051 24.5 2.1 17 197-213 5-21 (75)
107 TIGR02976 phageshock_pspB phag 40.5 44 0.00095 23.3 3.4 7 218-224 29-35 (75)
108 PF04888 SseC: Secretion syste 39.3 2.6E+02 0.0056 24.3 9.0 24 170-193 33-56 (306)
109 PF09548 Spore_III_AB: Stage I 39.2 1.2E+02 0.0027 24.1 6.4 61 140-206 106-168 (170)
110 PF10661 EssA: WXG100 protein 39.2 49 0.0011 26.1 3.9 24 191-214 114-137 (145)
111 PF10814 DUF2562: Protein of u 38.1 1.9E+02 0.004 22.3 6.7 51 167-217 62-113 (133)
112 PRK00846 hypothetical protein; 38.0 1.4E+02 0.0031 20.9 7.9 48 132-179 13-60 (77)
113 PF11395 DUF2873: Protein of u 37.8 60 0.0013 19.5 3.1 6 197-202 11-16 (43)
114 PRK13872 conjugal transfer pro 37.4 94 0.002 26.1 5.7 9 211-219 57-65 (228)
115 COG4068 Uncharacterized protei 37.4 42 0.00091 22.3 2.7 8 183-190 33-40 (64)
116 PRK09458 pspB phage shock prot 37.2 47 0.001 23.2 3.1 7 218-224 29-35 (75)
117 PF10749 DUF2534: Protein of u 37.0 50 0.0011 23.4 3.2 15 194-208 12-26 (85)
118 COG4942 Membrane-bound metallo 37.0 3.5E+02 0.0076 25.2 10.4 59 127-185 40-98 (420)
119 PTZ00478 Sec superfamily; Prov 37.0 1.4E+02 0.003 21.2 5.4 52 162-213 13-64 (81)
120 PF08114 PMP1_2: ATPase proteo 37.0 30 0.00066 21.2 1.8 20 200-219 14-33 (43)
121 PF11598 COMP: Cartilage oligo 36.8 92 0.002 19.5 4.1 27 136-162 5-31 (45)
122 KOG2927 Membrane component of 36.8 30 0.00065 31.3 2.6 23 195-218 189-211 (372)
123 PF07432 Hc1: Histone H1-like 36.0 1.9E+02 0.0041 22.0 6.4 45 144-188 2-46 (123)
124 PHA02844 putative transmembran 35.8 48 0.001 23.1 2.9 25 189-213 38-62 (75)
125 KOG3202 SNARE protein TLG1/Syn 35.8 2.8E+02 0.0061 23.7 9.6 18 154-171 146-163 (235)
126 PF10027 DUF2269: Predicted in 35.7 45 0.00098 25.9 3.3 32 187-218 119-150 (150)
127 COG2966 Uncharacterized conser 35.7 69 0.0015 27.6 4.6 47 162-208 92-138 (250)
128 KOG1666 V-SNARE [Intracellular 35.6 1.2E+02 0.0026 25.6 5.8 31 168-198 164-194 (220)
129 PF00015 MCPsignal: Methyl-acc 35.6 2.3E+02 0.0049 22.6 11.6 60 125-184 128-187 (213)
130 PF05399 EVI2A: Ectropic viral 35.4 47 0.001 27.9 3.3 18 196-213 131-148 (227)
131 PF00517 GP41: Retroviral enve 35.3 86 0.0019 26.0 5.0 14 130-143 106-119 (204)
132 PF06422 PDR_CDR: CDR ABC tran 35.2 80 0.0017 23.1 4.3 26 178-204 32-57 (103)
133 PRK15041 methyl-accepting chem 35.1 4E+02 0.0087 25.3 12.8 52 127-178 435-486 (554)
134 PF03653 UPF0093: Uncharacteri 35.0 39 0.00085 26.5 2.8 26 194-219 122-147 (147)
135 PHA02675 ORF104 fusion protein 35.0 1.7E+02 0.0037 20.9 7.6 39 138-176 36-74 (90)
136 PRK01844 hypothetical protein; 34.7 50 0.0011 22.9 2.9 20 196-215 4-24 (72)
137 PF07412 Geminin: Geminin; In 34.5 1.4E+02 0.0031 24.8 6.1 66 101-167 102-167 (200)
138 PHA02650 hypothetical protein; 33.9 63 0.0014 22.8 3.3 22 192-213 42-63 (81)
139 COG1314 SecG Preprotein transl 33.4 59 0.0013 23.3 3.2 13 205-217 10-22 (86)
140 TIGR00327 secE_euk_arch protei 33.2 1.3E+02 0.0028 20.1 4.6 35 170-204 4-38 (61)
141 PRK09793 methyl-accepting prot 33.0 4.2E+02 0.0092 24.9 11.1 50 131-180 435-484 (533)
142 PF06783 UPF0239: Uncharacteri 32.7 72 0.0015 22.8 3.5 24 196-219 21-44 (85)
143 PF15102 TMEM154: TMEM154 prot 32.6 33 0.00072 27.1 2.0 6 216-221 82-87 (146)
144 KOG0859 Synaptobrevin/VAMP-lik 32.5 1.1E+02 0.0023 25.6 5.0 11 158-168 138-148 (217)
145 PF05739 SNARE: SNARE domain; 32.4 1.4E+02 0.003 19.1 8.3 51 131-181 10-60 (63)
146 PF06738 DUF1212: Protein of u 32.3 99 0.0021 24.8 4.9 33 166-198 74-106 (193)
147 PF06013 WXG100: Proteins of 1 32.1 1.5E+02 0.0033 19.5 9.5 63 2-65 10-72 (86)
148 TIGR00701 conserved hypothetic 32.0 45 0.00097 26.1 2.6 25 196-220 118-142 (142)
149 PHA02849 putative transmembran 31.8 59 0.0013 22.9 2.9 24 196-219 17-40 (82)
150 PRK10573 type IV pilin biogene 31.5 3.9E+02 0.0085 24.1 10.4 42 135-177 313-354 (399)
151 PRK00523 hypothetical protein; 30.6 65 0.0014 22.3 2.9 11 205-215 15-25 (72)
152 KOG3498 Preprotein translocase 30.4 1.8E+02 0.0038 19.8 5.0 29 163-191 2-30 (67)
153 PF09177 Syntaxin-6_N: Syntaxi 30.4 1.5E+02 0.0033 21.2 5.1 53 5-57 41-94 (97)
154 PF05546 She9_MDM33: She9 / Md 30.3 3.3E+02 0.0071 22.8 20.2 26 195-220 152-177 (207)
155 COG3736 VirB8 Type IV secretor 30.3 1.4E+02 0.003 25.6 5.5 9 210-218 58-66 (239)
156 COG1930 CbiN ABC-type cobalt t 30.1 79 0.0017 23.0 3.4 16 199-214 8-23 (97)
157 COG5278 Predicted periplasmic 29.9 3.3E+02 0.0072 22.7 10.4 12 128-139 104-115 (207)
158 PHA03164 hypothetical protein; 29.8 57 0.0012 22.9 2.5 38 186-223 47-85 (88)
159 COG1459 PulF Type II secretory 29.4 4.5E+02 0.0098 24.2 10.3 56 123-178 96-151 (397)
160 PF15106 TMEM156: TMEM156 prot 29.4 49 0.0011 27.8 2.5 21 194-215 174-194 (226)
161 PHA02414 hypothetical protein 29.3 2.3E+02 0.0051 20.8 8.5 44 133-176 30-73 (111)
162 PF05454 DAG1: Dystroglycan (D 29.2 18 0.00039 31.9 0.0 19 205-223 159-177 (290)
163 PF04995 CcmD: Heme exporter p 28.9 95 0.0021 19.2 3.3 17 196-212 8-24 (46)
164 KOG2546 Abl interactor ABI-1, 28.9 2.2E+02 0.0047 26.7 6.7 49 129-177 52-100 (483)
165 PRK11901 hypothetical protein; 28.7 56 0.0012 29.2 3.0 24 194-217 35-59 (327)
166 PF13198 DUF4014: Protein of u 28.6 73 0.0016 22.0 2.8 9 188-196 8-16 (72)
167 PRK13887 conjugal transfer pro 28.2 1.6E+02 0.0034 25.1 5.6 25 195-219 54-79 (250)
168 KOG2678 Predicted membrane pro 27.2 3.9E+02 0.0086 22.8 12.1 28 169-196 185-213 (244)
169 KOG3850 Predicted membrane pro 27.2 5.1E+02 0.011 24.0 18.1 8 166-173 352-359 (455)
170 COG1459 PulF Type II secretory 27.0 2.2E+02 0.0048 26.2 6.7 42 150-191 109-150 (397)
171 PRK15048 methyl-accepting chem 26.9 5.4E+02 0.012 24.2 12.8 50 129-178 435-484 (553)
172 PF05377 FlaC_arch: Flagella a 25.9 2E+02 0.0043 18.9 5.7 25 127-151 23-47 (55)
173 COG4575 ElaB Uncharacterized c 25.8 2.8E+02 0.0061 20.6 10.0 24 185-209 74-97 (104)
174 PHA02657 hypothetical protein; 25.8 82 0.0018 22.6 2.8 24 196-219 27-50 (95)
175 PF00482 T2SF: Type II secreti 25.5 2.4E+02 0.0052 19.7 7.1 10 157-166 72-81 (124)
176 PF12955 DUF3844: Domain of un 25.0 1.1E+02 0.0025 22.6 3.6 27 196-222 69-95 (103)
177 PF08412 Ion_trans_N: Ion tran 24.8 1.2E+02 0.0025 21.3 3.5 26 195-220 46-71 (77)
178 TIGR03141 cytochro_ccmD heme e 24.5 1.3E+02 0.0028 18.5 3.3 17 196-212 9-25 (45)
179 KOG4025 Putative apoptosis rel 24.5 3.9E+02 0.0085 21.8 7.3 19 6-24 124-142 (207)
180 PF11293 DUF3094: Protein of u 24.3 1.5E+02 0.0033 19.4 3.6 21 192-212 27-47 (55)
181 PF05478 Prominin: Prominin; 24.1 7.5E+02 0.016 24.9 19.3 46 137-182 355-401 (806)
182 COG4640 Predicted membrane pro 24.0 83 0.0018 29.1 3.2 8 178-185 31-38 (465)
183 PF12325 TMF_TATA_bd: TATA ele 23.8 1.4E+02 0.003 22.7 4.0 30 122-151 86-115 (120)
184 PF13779 DUF4175: Domain of un 23.7 8E+02 0.017 25.1 11.4 27 139-165 581-607 (820)
185 PF12166 DUF3595: Protein of u 23.6 74 0.0016 29.2 2.9 20 196-215 63-82 (422)
186 PF09788 Tmemb_55A: Transmembr 23.5 82 0.0018 27.2 2.9 7 196-202 198-204 (256)
187 smart00397 t_SNARE Helical reg 23.5 2E+02 0.0043 18.1 9.4 53 135-187 8-60 (66)
188 PRK11677 hypothetical protein; 23.3 3.6E+02 0.0078 20.9 8.0 51 135-185 36-86 (134)
189 PF13721 SecD-TM1: SecD export 23.3 1.2E+02 0.0025 22.2 3.4 23 195-217 6-28 (101)
190 PF05545 FixQ: Cbb3-type cytoc 23.2 1.3E+02 0.0027 18.8 3.1 19 201-219 15-33 (49)
191 PF10498 IFT57: Intra-flagella 23.1 3E+02 0.0065 25.0 6.7 54 4-69 228-281 (359)
192 PF02009 Rifin_STEVOR: Rifin/s 22.9 72 0.0015 28.3 2.6 34 43-80 39-72 (299)
193 PHA02642 C-type lectin-like pr 22.7 45 0.00097 28.1 1.2 10 195-204 49-58 (216)
194 PHA02911 C-type lectin-like pr 22.6 1E+02 0.0022 25.8 3.2 7 187-193 22-28 (213)
195 PRK08307 stage III sporulation 22.2 3.5E+02 0.0076 21.6 6.3 61 140-206 107-169 (171)
196 PRK01026 tetrahydromethanopter 22.2 2.9E+02 0.0062 19.4 7.7 13 161-173 23-35 (77)
197 PF04415 DUF515: Protein of un 22.0 56 0.0012 30.3 1.8 23 193-215 28-50 (416)
198 PF05399 EVI2A: Ectropic viral 22.0 94 0.002 26.2 2.9 12 199-210 130-141 (227)
199 PHA02513 V1 structural protein 21.6 2E+02 0.0043 21.8 4.3 16 198-214 70-85 (135)
200 COG4499 Predicted membrane pro 21.3 1.8E+02 0.0038 26.9 4.7 22 193-214 219-240 (434)
201 PF15145 DUF4577: Domain of un 21.3 1.1E+02 0.0025 23.1 2.9 19 194-212 60-78 (128)
202 PF11119 DUF2633: Protein of u 21.3 96 0.0021 20.6 2.3 26 194-219 7-33 (59)
203 COG4736 CcoQ Cbb3-type cytochr 21.0 1.4E+02 0.003 20.0 3.0 20 200-219 14-33 (60)
204 KOG0862 Synaptobrevin/VAMP-lik 20.8 5.2E+02 0.011 21.8 9.7 40 131-170 133-172 (216)
205 PF04728 LPP: Lipoprotein leuc 20.8 2.6E+02 0.0056 18.4 7.0 18 167-184 31-48 (56)
206 KOG0972 Huntingtin interacting 20.7 3E+02 0.0065 24.5 5.8 17 51-67 270-286 (384)
207 PF05624 LSR: Lipolysis stimul 20.6 47 0.001 20.9 0.7 18 199-216 5-22 (49)
208 PRK13673 hypothetical protein; 20.5 1.4E+02 0.0031 22.7 3.4 21 128-148 36-56 (118)
209 PF02520 DUF148: Domain of unk 20.5 3.5E+02 0.0076 19.7 8.1 17 85-101 11-27 (113)
210 KOG1326 Membrane-associated pr 20.2 1E+02 0.0022 31.8 3.2 24 192-215 1068-1091(1105)
211 PF11837 DUF3357: Domain of un 20.0 35 0.00075 25.3 0.0 9 196-204 28-36 (106)
212 PF04906 Tweety: Tweety; Inte 20.0 4.5E+02 0.0098 24.2 7.3 11 138-148 124-134 (406)
213 TIGR02833 spore_III_AB stage I 20.0 4.2E+02 0.009 21.2 6.3 61 140-206 106-168 (170)
214 PF07010 Endomucin: Endomucin; 20.0 1.3E+02 0.0028 25.7 3.4 7 218-224 214-220 (259)
No 1
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.7e-47 Score=329.72 Aligned_cols=217 Identities=44% Similarity=0.698 Sum_probs=199.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVER 80 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r 80 (225)
|++.+++|...++.||.+|+.+++++...+..+ +.++..|+|++|+..++++|.++|.+|+.+|..|+.+|++++.|
T Consensus 80 l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~---~~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~R 156 (297)
T KOG0810|consen 80 LESLVDEIRRRARKIKTKLKALEKENEADETQN---RSSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQR 156 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC---CCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999988764333 33455799999999999999999999999999999999999988
Q ss_pred hhhhcCCCCCChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 027280 81 RVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGD 160 (225)
Q Consensus 81 ~~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge 160 (225)
+|..+.+..++|++++.++++|+++.|++..+. ++++.+.+|.++++||.+|.+||++|.|||+||.||++||+.|||
T Consensus 157 ql~i~~~~~~~de~ie~~ie~g~~~~f~~~~i~--~~~~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgE 234 (297)
T KOG0810|consen 157 QLFIVGGEETTDEEIEEMIESGGSEVFTQKAIQ--DRGQAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGE 234 (297)
T ss_pred HHhhhCCCcCChHHHHHHHHCCChHHHHHHHHH--HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 776655448999999999999999999998887 467788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHhccccCC
Q 027280 161 MLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKPWSSN 222 (225)
Q Consensus 161 ~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~~i~~~~~~~ 222 (225)
|||+||+||.+|.+||++|..++.+|..||+++|||+||++++++|+++++++++++||++.
T Consensus 235 mvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ii~~iii~~v~v~~i~~~~~~~ 296 (297)
T KOG0810|consen 235 MVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIIIIIILIIIIVVLVVVIVVPLVLF 296 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeeeehHHHHHHHHHhhhhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999864
No 2
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.4e-32 Score=226.05 Aligned_cols=170 Identities=29% Similarity=0.511 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCChHHHHHhhhcCChhHHHHHHHHH-hchhchH
Q 027280 43 RSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQE-QGRGQIM 121 (225)
Q Consensus 43 rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~-~~~~q~~ 121 (225)
-.++.|....+.+|.+++++|+.++..|++.|+++..|+| .++.|.+|+++++..+++.++.++|.+++.. .+++.++
T Consensus 96 ~~k~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy-~Ia~P~ATEdeve~aInd~nG~qvfsqalL~anr~geAk 174 (280)
T COG5074 96 ANKQAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQY-IIAQPEATEDEVEAAINDVNGQQVFSQALLNANRRGEAK 174 (280)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh-hhcCCccchHHHHHHhcccchHHHHHHHHHhcCccchHH
Confidence 4578888999999999999999999999999999987665 6788999999999999988888999888764 4678889
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--hhHHH
Q 027280 122 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR--KWMCI 199 (225)
Q Consensus 122 ~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r--k~~~~ 199 (225)
.+|.++++||.+|++||++|.||.+||+||+.||.+|.+++|.|+.|++++..++++|+.++.+|.+|.+++| ||.||
T Consensus 175 taL~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~ 254 (280)
T COG5074 175 TALAEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCY 254 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999888 46788
Q ss_pred HHHHHHHHHHHHHH
Q 027280 200 AIIILLIIVAIIVV 213 (225)
Q Consensus 200 ~~~i~~ii~~ii~~ 213 (225)
++++++|+++++++
T Consensus 255 gI~~iii~viv~vv 268 (280)
T COG5074 255 GICFIIIIVIVVVV 268 (280)
T ss_pred hhHHHHHHHHHHHH
Confidence 77766655544444
No 3
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.3e-27 Score=203.00 Aligned_cols=176 Identities=26% Similarity=0.354 Sum_probs=128.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhhcCCCCCChHHHHH--hhhcCChhHHHHHHHHHh
Q 027280 39 TGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYRE-VVERRVYTVTGKRADEETIDQ--LIETGDSEQIFQKAIQEQ 115 (225)
Q Consensus 39 s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~-~~~r~~~~i~~~~~t~eeie~--~~e~~~~~~~~q~~~~~~ 115 (225)
.++.+..+.+.+.|.+.|..++++|+.+|.......+. -..|. .-.++.+ +++-+. ....+....-.+......
T Consensus 87 ~~~~~~~k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~--s~~s~~~-~~~~~~~~~~~~~~~~~~~q~e~~~q 163 (269)
T KOG0811|consen 87 ESDLRQLKIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARG--SQNSQQL-DEESPRVDELSNNGSQSQQQLEEQAQ 163 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccc--cccchhh-hhhhhhhhhhhccchhhhhHHHHHHh
Confidence 45578999999999999999999999998876665541 11110 0001111 111111 111111111111011111
Q ss_pred chhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccch
Q 027280 116 GRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 195 (225)
Q Consensus 116 ~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk 195 (225)
....+...+..+++|...|.+||.+|.||++||+||+.||++||++||+||+||++|..+|+.|+.+|.+|.+|+++++|
T Consensus 164 ~~e~~~~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k 243 (269)
T KOG0811|consen 164 DNEILEYQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARK 243 (269)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 11112235778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIK 217 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~ 217 (225)
|.|++++|++++++++.++|+.
T Consensus 244 ~~~~ll~v~~~v~lii~l~i~~ 265 (269)
T KOG0811|consen 244 KKCILLLVGGPVGLIIGLIIAG 265 (269)
T ss_pred chhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999998888877654
No 4
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-26 Score=195.68 Aligned_cols=195 Identities=22% Similarity=0.306 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Q 027280 5 VDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVER--RV 82 (225)
Q Consensus 5 ~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r--~~ 82 (225)
+.+|+.+..++.+.|+.++... + .+..++.-+++|.+..+..+++.+..+|+..|..|-+..+.+-.+ .|
T Consensus 106 tq~Itqll~~cqk~iq~~~a~~-------n-~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~ 177 (305)
T KOG0809|consen 106 TQEITQLLQKCQKLIQRLSASL-------N-QLSPSERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEY 177 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc-------C-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccch
Confidence 4445555555555555554431 1 122345678889999999999999999999887666655554332 12
Q ss_pred hhcCCCCCChHHHHHhhhcCChhHHH-HHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 027280 83 YTVTGKRADEETIDQLIETGDSEQIF-QKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM 161 (225)
Q Consensus 83 ~~i~~~~~t~eeie~~~e~~~~~~~~-q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~ 161 (225)
..-..|.....+.+++ ....| +.+++ ........+.+|.++|.++.++|.||++||.||+.||.+||.+
T Consensus 178 e~~~~~~~~~~dd~d~-----~~~~~qe~ql~-----~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtv 247 (305)
T KOG0809|consen 178 EDSLDNTVDLPDDEDF-----SDRTFQEQQLM-----LFENNEEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTV 247 (305)
T ss_pred hhhccccccCcchhhh-----hhhhHHHHHHH-----HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 2211222211111111 11122 22222 1223566789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 027280 162 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 218 (225)
Q Consensus 162 id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~~i~~~ 218 (225)
||+|||||+++..+|+.|.++|.||..|||+++|++||++++++||+++++++ +++
T Consensus 248 vDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~llvlli-lk~ 303 (305)
T KOG0809|consen 248 VDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIALLVLLI-LKK 303 (305)
T ss_pred hhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHHHHHHH-hhc
Confidence 99999999999999999999999999999999999999999888888766654 443
No 5
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.87 E-value=4.8e-20 Score=155.93 Aligned_cols=92 Identities=28% Similarity=0.542 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH
Q 027280 124 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIII 203 (225)
Q Consensus 124 l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i 203 (225)
...+.+|.++|.+|.++|.||++||.||+.+|.+||+.||+||+|++++..|++.|.++|.+|..|||+.+||..|++++
T Consensus 187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli 266 (283)
T COG5325 187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI 266 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence 33489999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHH
Q 027280 204 LLIIVAIIVVAV 215 (225)
Q Consensus 204 ~~ii~~ii~~~i 215 (225)
++||++++++.+
T Consensus 267 l~vv~lfv~l~~ 278 (283)
T COG5325 267 LLVVLLFVSLIK 278 (283)
T ss_pred HHHHHHHHHHHH
Confidence 777777665543
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.3e-16 Score=135.63 Aligned_cols=198 Identities=19% Similarity=0.300 Sum_probs=133.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCC---CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKP---GCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVV 78 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~---~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~ 78 (225)
||...||.+++..||.+|..|++.+....+.. +...+....-+-++.+..|..++.++...|+.+.+.-....++.-
T Consensus 75 ~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~gn~s~~~~~~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k 154 (311)
T KOG0812|consen 75 DDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANGNLSNKQLVQHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVK 154 (311)
T ss_pred cCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhccccchHhhhhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 67788999999999999999999876643221 111111124567888999999999999999998764444444433
Q ss_pred Hhhh-hh-----cCC-CC----CChHHHHH-------------hhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHH
Q 027280 79 ERRV-YT-----VTG-KR----ADEETIDQ-------------LIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAV 134 (225)
Q Consensus 79 ~r~~-~~-----i~~-~~----~t~eeie~-------------~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i 134 (225)
.|+. +. +++ |. +...-... -++.|+++...++.+.. ..+..+.+++|.+.+
T Consensus 155 ~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ln~gd~~~~qqqQm~l-----l~es~~Y~Q~R~~~~ 229 (311)
T KOG0812|consen 155 NRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVESLNMGDSSNPQQQQMAL-----LDESDEYVQERAKTM 229 (311)
T ss_pred hHHHHhccccCCCCCcccCcccccCCchhhhcCchhhcccccccccccCCCCCHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 2322 11 111 10 00000000 11112211111111111 112367899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHH
Q 027280 135 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILL 205 (225)
Q Consensus 135 ~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ 205 (225)
..||.+|.||.+||.+||+||.+|||++.+||+||+.+..+++.|..+|.|....-+++| |+++-++.++
T Consensus 230 q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNR-wLmvkiF~i~ 299 (311)
T KOG0812|consen 230 QNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNR-WLMVKIFGIL 299 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccch-HHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999888887766 5444443333
No 7
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=99.61 E-value=8.5e-15 Score=115.95 Aligned_cols=104 Identities=33% Similarity=0.580 Sum_probs=90.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVER 80 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r 80 (225)
|++.+++++.+++.|+..|+.|+..+...... +++++.|++++++.+|.++|.++|++|+.+|..|+..||+++.|
T Consensus 46 l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~----~~s~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k~~i~R 121 (151)
T cd00179 46 LESLVQEIKKLAKEIKGKLKELEESNEQNEAL----NGSSVDRIRKTQHSGLSKKFVEVMTEFNKAQRKYRERYKERIQR 121 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999876543211 26788999999999999999999999999999999999999988
Q ss_pred hhhhcCCCCCChHHHHHhhhcCChhHHHH
Q 027280 81 RVYTVTGKRADEETIDQLIETGDSEQIFQ 109 (225)
Q Consensus 81 ~~~~i~~~~~t~eeie~~~e~~~~~~~~q 109 (225)
+| .+.+|++||+++++++++|++..|++
T Consensus 122 q~-~i~~~~~tdeei~~~~~~~~~~~~~~ 149 (151)
T cd00179 122 QL-EITGGEATDEELEDMLESGNSEIFTS 149 (151)
T ss_pred HH-HHcCCCCChHHHHHHHHcCChhhhcC
Confidence 76 55789999999999999998776664
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.53 E-value=1.1e-13 Score=94.07 Aligned_cols=63 Identities=41% Similarity=0.646 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027280 129 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 191 (225)
Q Consensus 129 ~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk 191 (225)
+|+++|..|+.++.+|++||.+|+.+|.+||++||+|++||+.|..++..|..+|.+|.+|+|
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~k 63 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQK 63 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999999999999999999999999999999999999999985
No 9
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.37 E-value=3.5e-12 Score=85.16 Aligned_cols=59 Identities=44% Similarity=0.653 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 128 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 186 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A 186 (225)
++|++++..|+.++.+|++||.+|+.+|.+||++||+|++|++.+..++..|..+|.+|
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999999999875
No 10
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.26 E-value=4.6e-11 Score=81.02 Aligned_cols=64 Identities=38% Similarity=0.542 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 186 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A 186 (225)
....+.+|+.++..|+.++.++++||.+|+.+|.+|+++||+|++|++.+..++..|...|.+|
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 3456889999999999999999999999999999999999999999999999999999999764
No 11
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=3.8e-08 Score=83.30 Aligned_cols=156 Identities=12% Similarity=0.248 Sum_probs=107.1
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCh---HHHHHhhhcCChhHHHHHHHHHh
Q 027280 39 TGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERRVYTVTGKRADE---ETIDQLIETGDSEQIFQKAIQEQ 115 (225)
Q Consensus 39 s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~~~~i~~~~~t~---eeie~~~e~~~~~~~~q~~~~~~ 115 (225)
..|.+-|+..+..+..++...-..|... .+... ..|.. ..+++..+ +........++ .+...
T Consensus 76 e~El~~R~~~i~~lr~q~~~~~~~~~~~--~~~~~----~~r~~--l~~~~~~~~~~~~~~~~~~~D~----v~~~~--- 140 (235)
T KOG3202|consen 76 EFELSRRRRFIDNLRTQLRQMKSKMAMS--GFANS----NIRDI--LLGPEKSPNLDEAMSRASGLDN----VQEIV--- 140 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccccc----cchhh--hcCCCCCCchhhhHHHhhccCc----HHHHH---
Confidence 3467888899999888888877777541 11111 11221 23444433 22222221111 11110
Q ss_pred chhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccch
Q 027280 116 GRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRK 195 (225)
Q Consensus 116 ~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk 195 (225)
...-..+++....+..|+.+|.-++.|-..++..+.+||.+||..++-++.+...+..+.+.|.+..+ .++.+.
T Consensus 141 -----~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~-~~s~~~ 214 (235)
T KOG3202|consen 141 -----QLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR-MASQCS 214 (235)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcccc
Confidence 01122467888999999999999999999999999999999999999999999999999999999998 556667
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027280 196 WMCIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i 215 (225)
+||+++++++++++++++++
T Consensus 215 ~~~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 215 QWCAILLLVGLLLLVVIIFI 234 (235)
T ss_pred chhHHHHHHHHHHHHHHHhc
Confidence 77777777666666665553
No 12
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=98.60 E-value=2.4e-07 Score=69.93 Aligned_cols=70 Identities=37% Similarity=0.676 Sum_probs=58.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYR 75 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k 75 (225)
|++..++++.++..|+..|+.|++.+.... . .++++.|++++++..|+++|+++|.+|+.+|..|+..||
T Consensus 48 l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~---~--~~~~~~r~~~~q~~~L~~~f~~~m~~fq~~Q~~~~~~~k 117 (117)
T smart00503 48 LERLIDDIKRLAKEIRAKLKELEKENLENR---A--SGSASDRTRKAQTEKLRKKFKEVMNEFQRLQRKYREREK 117 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhc---c--cCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 356788999999999999999988755431 1 146778999999999999999999999999888776664
No 13
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=1.6e-06 Score=75.39 Aligned_cols=87 Identities=25% Similarity=0.373 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAII 202 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~ 202 (225)
.++...+--+++.+|++.+.|+..|-.-|+..|-+|...||.|-+++..|..++..|+..|.+|.......|+|+.++++
T Consensus 223 l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~ll 302 (316)
T KOG3894|consen 223 LLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLL 302 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHH
Confidence 45667777889999999999999999999999999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHH
Q 027280 203 ILLIIVA 209 (225)
Q Consensus 203 i~~ii~~ 209 (225)
++-.+++
T Consensus 303 vlsf~lL 309 (316)
T KOG3894|consen 303 VLSFSLL 309 (316)
T ss_pred HHHHHHH
Confidence 6655554
No 14
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=8.7e-05 Score=55.90 Aligned_cols=85 Identities=15% Similarity=0.326 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHH
Q 027280 130 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS---AVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLI 206 (225)
Q Consensus 130 R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~---a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~i 206 (225)
..+.+..++..+.++.+++.+=-.-|-+.|+-||.+++-.++ +...-+++...|++ +|..++.|++.|++++++|
T Consensus 27 ~~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkr--k~wWkn~Km~~il~~v~~i 104 (116)
T KOG0860|consen 27 ANDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKR--KMWWKNCKMRIILGLVIII 104 (116)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999999999999876554 33333444444443 5555666666666666666
Q ss_pred HHHHHHHHHh
Q 027280 207 IVAIIVVAVI 216 (225)
Q Consensus 207 i~~ii~~~i~ 216 (225)
++++++++++
T Consensus 105 ~l~iiii~~~ 114 (116)
T KOG0860|consen 105 LLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHh
Confidence 6666666553
No 15
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=98.03 E-value=0.00018 Score=51.90 Aligned_cols=49 Identities=14% Similarity=0.295 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
+.+.+++..+.++.++..+=-..+.+.|+.|+.+++..+.-......-.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~ 51 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFK 51 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHH
Confidence 4677888999999999999888899999999999988777555554433
No 16
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.92 E-value=0.00011 Score=55.18 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHH
Q 027280 128 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLII 207 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii 207 (225)
.+-.+.+..|.+.+.-|+.+--+++.-|..|..++|.+++..+.+......+...+..-.+. +.++.+||++++++|+
T Consensus 32 ~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~--sg~~l~~~m~~f~lV~ 109 (118)
T KOG3385|consen 32 RENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR--SGISLLCWMAVFSLVA 109 (118)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc--CCcchHHHHHHHHHHH
Confidence 34456788999999999999999999999999999999999999999999999999876655 6678888877666665
Q ss_pred HHHH
Q 027280 208 VAII 211 (225)
Q Consensus 208 ~~ii 211 (225)
++++
T Consensus 110 ~fi~ 113 (118)
T KOG3385|consen 110 FFIL 113 (118)
T ss_pred HHHh
Confidence 5443
No 17
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=97.66 E-value=0.00011 Score=53.61 Aligned_cols=57 Identities=26% Similarity=0.418 Sum_probs=45.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~ 60 (225)
|+.-+.+|+.++..|+.+|+.|++.+... ....+++++.|+|++++..|+++|+++|
T Consensus 47 l~~l~~~i~~~~~~~~~~lk~l~~~~~~~---~~~~~~~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 47 LDELTDEIKQLFQKIKKRLKQLSKDNEDS---EGEEPSSNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCTT--SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhh---cccCCCcHHHHHHHHHHHHHHHHHHHHC
Confidence 35678899999999999999999985421 1224567889999999999999999987
No 18
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=97.10 E-value=0.017 Score=49.56 Aligned_cols=74 Identities=19% Similarity=0.309 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHhc
Q 027280 141 LLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAVIK 217 (225)
Q Consensus 141 i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~~i~~ 217 (225)
...|.+-..-++..+.+-..+|+..+..++.....+......|.. |.+++.+||.|++++++++++|+++.+++
T Consensus 176 a~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~---~~~~~~~~~~~~~i~~v~~~Fi~mvl~ir 249 (251)
T PF09753_consen 176 ARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKE---HSSKSWGCWTWLMIFVVIIVFIMMVLFIR 249 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhcccHHHHHHHHHHHHHHHHHHHHhe
Confidence 344555566677889999999999999999999999999998875 33333446655555555555444444443
No 19
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.79 E-value=0.1 Score=46.04 Aligned_cols=89 Identities=17% Similarity=0.255 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc----hhHHHHHHH
Q 027280 128 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR----KWMCIAIII 203 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r----k~~~~~~~i 203 (225)
.+-..+++.=...|.+|-.-..+|..|...=..++..=...|+....+|+.|.....+|...-+++. +-.+|.+++
T Consensus 195 ~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~i~ 274 (297)
T KOG0810|consen 195 KQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKIII 274 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhceeee
Confidence 3334566666678999999999999999999999999999999999999999999999888877665 336787777
Q ss_pred HHHHHHHHHHHHh
Q 027280 204 LLIIVAIIVVAVI 216 (225)
Q Consensus 204 ~~ii~~ii~~~i~ 216 (225)
+++++++++++++
T Consensus 275 ii~~iii~~v~v~ 287 (297)
T KOG0810|consen 275 IIILIIIIVVLVV 287 (297)
T ss_pred ehHHHHHHHHHhh
Confidence 7777765555443
No 20
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.65 E-value=0.05 Score=47.23 Aligned_cols=93 Identities=13% Similarity=0.155 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc----hhHHHHHHHH
Q 027280 129 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR----KWMCIAIIIL 204 (225)
Q Consensus 129 ~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r----k~~~~~~~i~ 204 (225)
.-...+..=+..|.+|..=..|+..++.+=|.||..=-.-|+...++|+.+..+.+.|...=+++- +..=+.++++
T Consensus 170 ~~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll 249 (269)
T KOG0811|consen 170 YQLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILL 249 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 345555666677777777778888888888888877777778888888888877777776544432 2234554444
Q ss_pred HHHHHHHHHHHhccccC
Q 027280 205 LIIVAIIVVAVIKPWSS 221 (225)
Q Consensus 205 ~ii~~ii~~~i~~~~~~ 221 (225)
+|+++++++++++-|+.
T Consensus 250 ~v~~~v~lii~l~i~~~ 266 (269)
T KOG0811|consen 250 LVGGPVGLIIGLIIAGI 266 (269)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44444444444555544
No 21
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=96.46 E-value=0.023 Score=41.62 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 4 DVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYRE 76 (225)
Q Consensus 4 ~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~ 76 (225)
...++++++..|...|+.+..- .......+..+.+...|.+.|..++++|+.+|..|.+..+.
T Consensus 38 ~~~~~~~l~k~~~~~l~~l~~~----------~~~~~~~~~~k~~~~KL~~df~~~l~~fq~~q~~~~~~~k~ 100 (102)
T PF14523_consen 38 LIQKTNQLIKEISELLKKLNSL----------SSDRSNDRQQKLQREKLSRDFKEALQEFQKAQRRYAEKEKQ 100 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh----------hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455556666666666665443 01234568888899999999999999999988777665543
No 22
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.065 Score=45.33 Aligned_cols=73 Identities=16% Similarity=0.323 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIIL 204 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~ 204 (225)
.+-+.+|-+-..++.+|..+=-.+|..=...+...+.||+.+..++++|.+..++| +.+|-...-+|++++++
T Consensus 191 Ekt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaa-Rkkki~c~gI~~iii~v 263 (280)
T COG5074 191 EKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAA-RKKKIRCYGICFIIIIV 263 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHH-HhcceehhhhHHHHHHH
Confidence 33344444444444445555555565555566677778888888888887775443 33333333344443333
No 23
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.04 E-value=0.73 Score=38.51 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH
Q 027280 134 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 134 i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~ 213 (225)
|+.=..-..|--+|=.++-.=++.|-+.|.+--.-.-++.+++.++.+-|..-.+.-- ..||.|.++++++++++.+++
T Consensus 137 l~ds~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~-~nk~~~~aii~~l~~~il~il 215 (220)
T KOG1666|consen 137 LKDSQRIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLI-RNKFTLTAIIALLVLAILLIL 215 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444445555557889999988888888888888888888866444332 246777666665555544443
No 24
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=95.99 E-value=0.17 Score=43.76 Aligned_cols=90 Identities=17% Similarity=0.307 Sum_probs=76.2
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 027280 120 IMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 199 (225)
Q Consensus 120 ~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~ 199 (225)
......++..=++.|.+|..-..+|..+..+=+.+|.-=...|++..+|+..|.....+|..+=++ .++.+.++++
T Consensus 190 ~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrr----t~k~~~~~Ll 265 (283)
T COG5325 190 ITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRR----TKKCRFYLLL 265 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhh----hccchhhHHH
Confidence 345677899999999999999999999999999999999999999999999999999999988654 4556777777
Q ss_pred HHHHHHHHHHHHHH
Q 027280 200 AIIILLIIVAIIVV 213 (225)
Q Consensus 200 ~~~i~~ii~~ii~~ 213 (225)
++++++++++.++.
T Consensus 266 il~vv~lfv~l~~k 279 (283)
T COG5325 266 ILLVVLLFVSLIKK 279 (283)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766666665554
No 25
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.22 E-value=0.1 Score=45.41 Aligned_cols=56 Identities=27% Similarity=0.346 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 130 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 130 R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
-...+.+|-..+..|..|..+|+..|+.|.+.||+|+++++.....|..+++.+++
T Consensus 216 iD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~k 271 (273)
T KOG3065|consen 216 IDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKK 271 (273)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHh
Confidence 45567888899999999999999999999999999999999999999999887754
No 26
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=94.51 E-value=1.2 Score=31.77 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 121 MDTLAEIQERHDAVRDLERKLLELQ 145 (225)
Q Consensus 121 ~~~l~~i~~R~~~i~~ie~~i~el~ 145 (225)
...++.+-+|.+.+..|+....+|.
T Consensus 20 ~~Ni~~ll~Rge~L~~L~~kt~~L~ 44 (89)
T PF00957_consen 20 RENIDKLLERGEKLEELEDKTEELS 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHH
Confidence 3455566666666666665444443
No 27
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.09 E-value=3 Score=36.60 Aligned_cols=203 Identities=16% Similarity=0.286 Sum_probs=116.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHH----HHHHHHHHHHHHHHHHHHHH----HH-----------
Q 027280 3 KDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGV----DRSRTATTLGLKKKFKDKMG----EF----------- 63 (225)
Q Consensus 3 ~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e----~rir~~~~~~L~~~f~~~~~----~f----------- 63 (225)
|.+++|.-....+|.+|..|-+...++- .|+++..+.+ ..+... +..+-.+-...++ .+
T Consensus 61 d~~~ev~~~l~rvrrk~~eLgk~~~Khl-~PsF~Dk~ede~~IE~ltq~-Itqll~~cqk~iq~~~a~~n~~~~~e~~~~ 138 (305)
T KOG0809|consen 61 DVAEEVDYYLSRVRRKIDELGKAHAKHL-RPSFSDKREDEHEIEELTQE-ITQLLQKCQKLIQRLSASLNQLSPSERLLR 138 (305)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCccchhHHHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 5788999999999999999998877664 5666554332 122222 2222211111111 11
Q ss_pred --------HHHHHHHHHHHHHHHHhhhhh-cCCCCC----ChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHH
Q 027280 64 --------QVLRENIHQEYREVVERRVYT-VTGKRA----DEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQER 130 (225)
Q Consensus 64 --------~~~q~~~~~~~k~~~~r~~~~-i~~~~~----t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R 130 (225)
..+| ....+||..-. .|+. +.+... -++-.+..+..++...+-..-++ ...+-..++-
T Consensus 139 ~n~~~~la~~LQ-~~s~~fR~~Qs-~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~q-------e~ql~~~e~~ 209 (305)
T KOG0809|consen 139 KNAQGYLALQLQ-TLSREFRGLQS-KYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQ-------EQQLMLFENN 209 (305)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHH-HHHHHhhchhhcccchhhhccccccCcchhhhhhhhHH-------HHHHHHHhcc
Confidence 1111 11223333321 2331 222211 11222333444444343332221 2356666776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc---chh-HHHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS---RKW-MCIAIIILLI 206 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~---rk~-~~~~~~i~~i 206 (225)
.....+=|+.|..|.+=..||+.+..+=|.+|-.=-.=|+-.--|+++....++.|.+---|+ .|. .-+.++++++
T Consensus 210 ~~~~~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~ 289 (305)
T KOG0809|consen 210 EEVVREREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLT 289 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHH
Confidence 777888899999999999999999999999886666667777889999999999998754433 233 3454444444
Q ss_pred HHHHHHHHHhc
Q 027280 207 IVAIIVVAVIK 217 (225)
Q Consensus 207 i~~ii~~~i~~ 217 (225)
++ +|++.++.
T Consensus 290 l~-ii~llvll 299 (305)
T KOG0809|consen 290 LL-IIALLVLL 299 (305)
T ss_pred HH-HHHHHHHH
Confidence 44 44444443
No 28
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=93.36 E-value=9.7 Score=38.24 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 027280 134 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQ 190 (225)
Q Consensus 134 i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~q 190 (225)
+..+.+.+..+.+-+.+++.-+-.+ +...+..-...+..++.......++...|.
T Consensus 359 v~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR 413 (806)
T PF05478_consen 359 VPPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDSYR 413 (806)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 3455566666666666666666555 555566666677777777666776666553
No 29
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=91.13 E-value=4.4 Score=34.22 Aligned_cols=89 Identities=19% Similarity=0.378 Sum_probs=43.2
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc-chhHHHHH
Q 027280 128 QERHDAV-RDLERKLLELQQIFLDMA----VLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNS-RKWMCIAI 201 (225)
Q Consensus 128 ~~R~~~i-~~ie~~i~el~~lf~dl~----~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~-rk~~~~~~ 201 (225)
-++++-+ .+|-.++..|..-|...+ ..+.+-.+.+-.-+--++.......-...-++ +|.++. .-|+.|.+
T Consensus 146 l~~q~~lQeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve---~y~ksk~s~wf~~~m 222 (244)
T KOG2678|consen 146 LEDQDTLQEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVE---KYDKSKLSYWFYITM 222 (244)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHH---HHHHhhhhHHHHHHH
Confidence 3344433 344555555544444433 23334444444444444444444444444444 344443 35666666
Q ss_pred HHHHHHHHHHHHHHhccc
Q 027280 202 IILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 202 ~i~~ii~~ii~~~i~~~~ 219 (225)
+|++|+.+|..|.|+.-+
T Consensus 223 iI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 223 IIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 666666666666665543
No 30
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=90.47 E-value=9.9 Score=32.18 Aligned_cols=48 Identities=10% Similarity=0.191 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHH
Q 027280 168 QVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 168 nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~~i 215 (225)
++....+..+...++++.+.+.-+++.+++|.++..++.|++++++++
T Consensus 121 ei~k~r~e~~~ml~evK~~~E~y~k~~k~~~~gi~aml~Vf~LF~lvm 168 (230)
T PF03904_consen 121 EIKKVREENKSMLQEVKQSHEKYQKRQKSMYKGIGAMLFVFMLFALVM 168 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344455566666777777777777777888887776655555555444
No 31
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=88.48 E-value=7.4 Score=27.95 Aligned_cols=43 Identities=9% Similarity=0.214 Sum_probs=23.8
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhH
Q 027280 154 LVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 197 (225)
Q Consensus 154 lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~ 197 (225)
.+.+|.+.+....+.......-+..+.+-+.+-.+..+. -||+
T Consensus 30 ~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~-D~~l 72 (92)
T PF03908_consen 30 TLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKT-DRIL 72 (92)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHH
Confidence 345566666666666666666666666666544443333 3444
No 32
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=88.24 E-value=0.69 Score=32.84 Aligned_cols=13 Identities=31% Similarity=0.296 Sum_probs=6.0
Q ss_pred HHHHHhccccCCC
Q 027280 211 IVVAVIKPWSSNK 223 (225)
Q Consensus 211 i~~~i~~~~~~~~ 223 (225)
|++++|.-+.||+
T Consensus 38 iLlImlfqsSS~~ 50 (85)
T PF10717_consen 38 ILLIMLFQSSSNG 50 (85)
T ss_pred HHHHHHHhccCCC
Confidence 3344455554443
No 33
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=87.91 E-value=8.6 Score=28.03 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhH-HHHHHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM-CIAIIILLIIVA 209 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~-~~~~~i~~ii~~ 209 (225)
...|..||.+-..+..=+.++-.=++.|..+-+..+.+++.-... ..-..+..+ +..|.-+-|. |++.+++.|+.
T Consensus 10 e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~--~n~Knir~~KmwilGlvgTi~g- 85 (98)
T PF11166_consen 10 EWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKK--KNDKNIRDIKMWILGLVGTIFG- 85 (98)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHH--HHHhhHHHHHHHHHHHHHHHHH-
Confidence 346777777777776667777777788888888888888874332 112222222 2223333244 44444444444
Q ss_pred HHHHHHhc
Q 027280 210 IIVVAVIK 217 (225)
Q Consensus 210 ii~~~i~~ 217 (225)
.+++++|.
T Consensus 86 sliia~lr 93 (98)
T PF11166_consen 86 SLIIALLR 93 (98)
T ss_pred HHHHHHHH
Confidence 45555554
No 34
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.48 E-value=1.3 Score=36.73 Aligned_cols=34 Identities=9% Similarity=0.287 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNI 165 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~I 165 (225)
..+-++...+.|+.+++.+=-..|-+.||-|.-.
T Consensus 125 d~lskvkaqv~evk~vM~eNIekvldRGekiELL 158 (217)
T KOG0859|consen 125 SKLAKVKAQVTEVKGVMMENIEKVLDRGEKIELL 158 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCeEEee
Confidence 3556666788888888888878888888865443
No 35
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=81.42 E-value=14 Score=25.17 Aligned_cols=44 Identities=25% Similarity=0.443 Sum_probs=24.6
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHH
Q 027280 156 DAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIII 203 (225)
Q Consensus 156 ~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i 203 (225)
....+-++.+|.+-......+...+.+|.+- +.+.+|.+-+++.
T Consensus 16 ~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I----~~n~kW~~r~iiG 59 (71)
T PF10779_consen 16 DNHEERIDKLEKRDAANEKDIKNLNKQLEKI----KSNTKWIWRTIIG 59 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 3355566666666666666666666666543 3445665543333
No 36
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=80.35 E-value=3 Score=29.66 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccCCC
Q 027280 197 MCIAIIILLIIVAIIVVAVIKPWSSNK 223 (225)
Q Consensus 197 ~~~~~~i~~ii~~ii~~~i~~~~~~~~ 223 (225)
+..++++++||||+|+++=--+.+++.
T Consensus 27 lMtILivLVIIiLlImlfqsSS~~~~s 53 (85)
T PF10717_consen 27 LMTILIVLVIIILLIMLFQSSSNGNSS 53 (85)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 445555666666666666555554443
No 37
>PRK10884 SH3 domain-containing protein; Provisional
Probab=75.85 E-value=46 Score=27.81 Aligned_cols=74 Identities=8% Similarity=0.104 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c--cccchhHHHHHHHHH-HHHHHHHHHHhccc
Q 027280 146 QIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL---Q--KNSRKWMCIAIIILL-IIVAIIVVAVIKPW 219 (225)
Q Consensus 146 ~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~---q--k~~rk~~~~~~~i~~-ii~~ii~~~i~~~~ 219 (225)
+...+|..-+.+-...+..++..-......+..+..++..+..- . ....+|+.++..+++ =+++.+++|-+.|+
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf~~Gg~v~~~GlllGlilp~l~pr 197 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWFMYGGGVAGIGLLLGLLLPHLIPR 197 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccccc
Confidence 33444444444444555555555555555555555555432111 1 112356666544432 22334444545543
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=72.49 E-value=27 Score=23.70 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
..|..||..+.-.-+...+|+..|..|...||..+..+..-...+....
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577788888888888888888899999999998888887777666543
No 39
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=71.45 E-value=64 Score=27.49 Aligned_cols=88 Identities=16% Similarity=0.293 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHH
Q 027280 124 LAEIQERHDAVR-DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR-KWMCIAI 201 (225)
Q Consensus 124 l~~i~~R~~~i~-~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r-k~~~~~~ 201 (225)
++.+-.+|+.++ +|-.+|..|..-.++-+... +..|..=..-++.+...++.-...|..+...-+... +.+.|+.
T Consensus 154 ~e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~---~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~ 230 (251)
T PF09753_consen 154 LEKILQHHRNLQEDLTEEMLSLARQLKENSLAF---SQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWT 230 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 334444555553 45555544444444333322 233333344466777777777778887776666644 4455555
Q ss_pred HHHHHHHHHHHHH
Q 027280 202 IILLIIVAIIVVA 214 (225)
Q Consensus 202 ~i~~ii~~ii~~~ 214 (225)
+++++++++++|+
T Consensus 231 ~~~i~~v~~~Fi~ 243 (251)
T PF09753_consen 231 WLMIFVVIIVFIM 243 (251)
T ss_pred HHHHHHHHHHHHH
Confidence 5555444443333
No 40
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=70.97 E-value=6.6 Score=37.14 Aligned_cols=9 Identities=11% Similarity=0.589 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 027280 15 IKSKIEELD 23 (225)
Q Consensus 15 ik~~l~~l~ 23 (225)
++..|..+.
T Consensus 64 i~~~l~~~~ 72 (490)
T PF00523_consen 64 IQDNLNRIN 72 (490)
T ss_dssp HHHHHHHHH
T ss_pred HHhhHHHHh
Confidence 333344443
No 41
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=69.17 E-value=0.92 Score=35.93 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHccc
Q 027280 179 GNTALQKAKKLQKN 192 (225)
Q Consensus 179 ~~~~L~~A~~~qk~ 192 (225)
|.--|-+-.+.+.+
T Consensus 115 GyDsLLKkKEae~k 128 (159)
T PF06789_consen 115 GYDSLLKKKEAELK 128 (159)
T ss_pred chHHHHHHHHHHHH
Confidence 44445444444433
No 42
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.80 E-value=70 Score=26.91 Aligned_cols=54 Identities=11% Similarity=0.205 Sum_probs=27.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHH
Q 027280 155 VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVA 209 (225)
Q Consensus 155 V~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ 209 (225)
+.+|+-.|-.+-.-+-....-+.=.+.-|.--.+.-+. -||+.|+.+|+++|++
T Consensus 152 l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~-Dk~iF~~G~i~~~v~~ 205 (213)
T KOG3251|consen 152 LVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVRE-DKIIFYGGVILTLVIM 205 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence 45666666666666555555555445444443333332 2455555555444443
No 43
>PHA02975 hypothetical protein; Provisional
Probab=67.58 E-value=10 Score=25.95 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=9.4
Q ss_pred HccccchhHHHHHHHHHHHH
Q 027280 189 LQKNSRKWMCIAIIILLIIV 208 (225)
Q Consensus 189 ~qk~~rk~~~~~~~i~~ii~ 208 (225)
+.+++..|++++++++.+++
T Consensus 37 ~~~~~~~~~~~ii~i~~v~~ 56 (69)
T PHA02975 37 PKKKSSLSIILIIFIIFITC 56 (69)
T ss_pred CCcCCchHHHHHHHHHHHHH
Confidence 44455555554444443333
No 44
>PHA02844 putative transmembrane protein; Provisional
Probab=67.19 E-value=9.1 Score=26.61 Aligned_cols=11 Identities=9% Similarity=0.012 Sum_probs=4.6
Q ss_pred chhHHHHHHHH
Q 027280 194 RKWMCIAIIIL 204 (225)
Q Consensus 194 rk~~~~~~~i~ 204 (225)
..|+.++++++
T Consensus 46 ~~~~~~ii~i~ 56 (75)
T PHA02844 46 SSTKIWILTII 56 (75)
T ss_pred hhHHHHHHHHH
Confidence 34444444333
No 45
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=67.13 E-value=34 Score=22.63 Aligned_cols=44 Identities=14% Similarity=0.351 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 176 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 176 (225)
+++.++.-+..|-..|.....--..+++.++++|.+++.-..++
T Consensus 2 ~~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~m 45 (57)
T PF02346_consen 2 RIKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYM 45 (57)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 46678888888888999999999999999999999998855544
No 46
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=67.12 E-value=34 Score=22.61 Aligned_cols=56 Identities=13% Similarity=0.176 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
.|..-...+.+..++-.+...-+..|++.|.++...+..+..++..+..-|..-.+
T Consensus 9 ~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~r 64 (66)
T PF12352_consen 9 SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISR 64 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHc
Confidence 34444455666666677777778899999999999999999999999988876443
No 47
>PRK14762 membrane protein; Provisional
Probab=66.65 E-value=10 Score=20.68 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027280 199 IAIIILLIIVAIIVVAVI 216 (225)
Q Consensus 199 ~~~~i~~ii~~ii~~~i~ 216 (225)
|.+.++.++.+.++..++
T Consensus 6 w~i~iifligllvvtgvf 23 (27)
T PRK14762 6 WAVLIIFLIGLLVVTGVF 23 (27)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443
No 48
>PRK04325 hypothetical protein; Provisional
Probab=66.14 E-value=41 Score=23.26 Aligned_cols=45 Identities=18% Similarity=0.259 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 134 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 134 i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
|..||..+.-.-+...+|+..|..|...|+.....+..-.+.+..
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888999999999999988887776666544
No 49
>PRK10404 hypothetical protein; Provisional
Probab=65.77 E-value=52 Score=24.27 Aligned_cols=28 Identities=18% Similarity=0.326 Sum_probs=14.9
Q ss_pred HHHHHHHHHHccccchhHHHHHHHHHHHH
Q 027280 180 NTALQKAKKLQKNSRKWMCIAIIILLIIV 208 (225)
Q Consensus 180 ~~~L~~A~~~qk~~rk~~~~~~~i~~ii~ 208 (225)
..-...|..|-+. .+|.-+++..++=++
T Consensus 66 k~aa~~td~yV~e-~Pw~avGiaagvGll 93 (101)
T PRK10404 66 KQAVYRADDYVHE-KPWQGIGVGAAVGLV 93 (101)
T ss_pred HHHHHHHHHHHHh-CcHHHHHHHHHHHHH
Confidence 3334444555544 688877665543333
No 50
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=65.65 E-value=47 Score=23.72 Aligned_cols=18 Identities=11% Similarity=0.261 Sum_probs=10.3
Q ss_pred ccchhHHHHHHHHHHHHH
Q 027280 192 NSRKWMCIAIIILLIIVA 209 (225)
Q Consensus 192 ~~rk~~~~~~~i~~ii~~ 209 (225)
+.+||.-+++.+++=+++
T Consensus 70 ~e~P~~svgiAagvG~ll 87 (94)
T PF05957_consen 70 RENPWQSVGIAAGVGFLL 87 (94)
T ss_pred HHChHHHHHHHHHHHHHH
Confidence 446888766655543333
No 51
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=63.96 E-value=19 Score=22.98 Aligned_cols=19 Identities=32% Similarity=0.766 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 027280 201 IIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 201 ~~i~~ii~~ii~~~i~~~~ 219 (225)
++++++++++++-+.+.|+
T Consensus 23 ~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 23 IILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3344444445555566666
No 52
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=62.66 E-value=93 Score=28.20 Aligned_cols=77 Identities=13% Similarity=0.222 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccccchhHH-HHHHHHHHHHHHH
Q 027280 136 DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDH---VQSGNTALQKAKKLQKNSRKWMC-IAIIILLIIVAII 211 (225)
Q Consensus 136 ~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~---v~~~~~~L~~A~~~qk~~rk~~~-~~~~i~~ii~~ii 211 (225)
.+.+.+......|.++..-...-||.--+++.-...+.++ ..+-.+.+.+|-.| +.+. ++.++++++++.+
T Consensus 110 sls~al~~~~~~fp~~~~~li~~GE~sG~L~~~l~~la~~~~~~~~~~~~i~~al~Y-----P~~ll~~~~~v~~~~~~~ 184 (399)
T PRK10573 110 AFSEALLQWPQVFPPLYQALIATGELTGKLDECCFQLARQQEAQQQLTKKVKKALRY-----PLIILAVALLVVLAMLHF 184 (399)
T ss_pred cHHHHHHhCcCcCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 3555555555555555443444555444445444444443 22333344444444 3332 2223333444445
Q ss_pred HHHHhc
Q 027280 212 VVAVIK 217 (225)
Q Consensus 212 ~~~i~~ 217 (225)
++|.+.
T Consensus 185 vlP~f~ 190 (399)
T PRK10573 185 VLPEFA 190 (399)
T ss_pred HhhhHH
Confidence 555544
No 53
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.20 E-value=67 Score=24.37 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=10.1
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 027280 194 RKWMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ii~~ 213 (225)
+-++|++++++++|+++.++
T Consensus 95 ~~il~~v~~i~l~iiii~~~ 114 (116)
T KOG0860|consen 95 RIILGLVIIILLVVIIIYIF 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555544443
No 54
>PF12669 P12: Virus attachment protein p12 family
Probab=62.02 E-value=7 Score=25.86 Aligned_cols=10 Identities=20% Similarity=0.046 Sum_probs=6.1
Q ss_pred HHHhccccCC
Q 027280 213 VAVIKPWSSN 222 (225)
Q Consensus 213 ~~i~~~~~~~ 222 (225)
..+++.+++|
T Consensus 18 r~~~k~~K~G 27 (58)
T PF12669_consen 18 RKFIKDKKKG 27 (58)
T ss_pred HHHHHHhhcC
Confidence 4556666665
No 55
>PHA03054 IMV membrane protein; Provisional
Probab=61.79 E-value=13 Score=25.55 Aligned_cols=10 Identities=30% Similarity=0.829 Sum_probs=4.0
Q ss_pred hhHHHHHHHH
Q 027280 195 KWMCIAIIIL 204 (225)
Q Consensus 195 k~~~~~~~i~ 204 (225)
.|+.++++++
T Consensus 47 ~~~~~ii~l~ 56 (72)
T PHA03054 47 GWYWLIIIFF 56 (72)
T ss_pred hHHHHHHHHH
Confidence 3444433333
No 56
>PHA02819 hypothetical protein; Provisional
Probab=61.13 E-value=13 Score=25.52 Aligned_cols=9 Identities=11% Similarity=-0.001 Sum_probs=3.5
Q ss_pred hhHHHHHHH
Q 027280 195 KWMCIAIII 203 (225)
Q Consensus 195 k~~~~~~~i 203 (225)
.|+.+++++
T Consensus 45 ~~~~~ii~l 53 (71)
T PHA02819 45 LRYYLIIGL 53 (71)
T ss_pred hHHHHHHHH
Confidence 344333333
No 57
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=60.94 E-value=5.1 Score=28.37 Aligned_cols=30 Identities=30% Similarity=0.616 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHccccchhHHHHHHHHHHHH
Q 027280 179 GNTALQKAKKLQKNSRKWMCIAIIILLIIV 208 (225)
Q Consensus 179 ~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~ 208 (225)
...+.+.|.++-+++|+|..+.+++.++++
T Consensus 49 ~~Gd~~~A~~aS~~Ak~~~~ia~~~g~~~~ 78 (82)
T PF04505_consen 49 AAGDYEGARRASRKAKKWSIIAIIIGIVII 78 (82)
T ss_pred HCCCHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 444677787777777777665555544443
No 58
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=60.70 E-value=29 Score=27.84 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=11.9
Q ss_pred HHHHHHHHccccch-hHHHHHHHHHHHH
Q 027280 182 ALQKAKKLQKNSRK-WMCIAIIILLIIV 208 (225)
Q Consensus 182 ~L~~A~~~qk~~rk-~~~~~~~i~~ii~ 208 (225)
++..|..-.++..| |.+.++++.+.++
T Consensus 139 ~~~~a~~~~~~~~Klyr~LGvl~G~~lv 166 (170)
T PF09548_consen 139 QLEEAREEAKKKGKLYRSLGVLGGLFLV 166 (170)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34444444444344 4455555444433
No 59
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.64 E-value=1.2e+02 Score=26.78 Aligned_cols=64 Identities=13% Similarity=0.281 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 125 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 125 ~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
..+.+-.+-+..=..++..+-.-..+|+.+..+=..||-.=+.-+.-.-++|..+.-.+.-|..
T Consensus 213 ~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ 276 (311)
T KOG0812|consen 213 ALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHS 276 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHH
Confidence 3344444555555566777777777777777777777777777777777777777777766544
No 60
>PRK00295 hypothetical protein; Provisional
Probab=60.10 E-value=52 Score=22.36 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
.|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888888888888888899999999999999988887777666554
No 61
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=60.07 E-value=30 Score=27.91 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=14.5
Q ss_pred HHHHHHHHHccccch-hHHHHHHHHHHHH
Q 027280 181 TALQKAKKLQKNSRK-WMCIAIIILLIIV 208 (225)
Q Consensus 181 ~~L~~A~~~qk~~rk-~~~~~~~i~~ii~ 208 (225)
.++..|...++++.| |.+.++++++.++
T Consensus 139 ~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lv 167 (171)
T PRK08307 139 REEEEAEEEQKKNEKMYKYLGFLAGLLIV 167 (171)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 344555555555555 4455555554444
No 62
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=59.95 E-value=30 Score=27.86 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=14.2
Q ss_pred HHHHHHHHHccccchh-HHHHHHHHHHHH
Q 027280 181 TALQKAKKLQKNSRKW-MCIAIIILLIIV 208 (225)
Q Consensus 181 ~~L~~A~~~qk~~rk~-~~~~~~i~~ii~ 208 (225)
.++..|..-++++.|. .+.++++++.++
T Consensus 138 ~~~~~a~~~~~k~~Kmy~~LGvl~Gl~lv 166 (170)
T TIGR02833 138 RQLTEAEDEQKKNEKMYRYLGVLVGLMIV 166 (170)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 3444555555555554 455555554444
No 63
>PHA02650 hypothetical protein; Provisional
Probab=59.72 E-value=19 Score=25.42 Aligned_cols=9 Identities=0% Similarity=-0.190 Sum_probs=3.4
Q ss_pred chhHHHHHH
Q 027280 194 RKWMCIAII 202 (225)
Q Consensus 194 rk~~~~~~~ 202 (225)
..|+.++++
T Consensus 47 ~~~~~~ii~ 55 (81)
T PHA02650 47 FNGQNFIFL 55 (81)
T ss_pred chHHHHHHH
Confidence 334433333
No 64
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=58.84 E-value=14 Score=23.21 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC
Q 027280 199 IAIIILLIIVAIIVVAVIKPWSSN 222 (225)
Q Consensus 199 ~~~~i~~ii~~ii~~~i~~~~~~~ 222 (225)
+++.+.++++++.+.+.++..+||
T Consensus 5 ~lip~sl~l~~~~l~~f~Wavk~G 28 (45)
T PF03597_consen 5 ILIPVSLILGLIALAAFLWAVKSG 28 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 344444555555555555666665
No 65
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=58.49 E-value=30 Score=23.03 Aligned_cols=16 Identities=6% Similarity=0.050 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHH
Q 027280 196 WMCIAIIILLIIVAII 211 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii 211 (225)
..-+++++++++++++
T Consensus 37 ~~~~i~~~~~i~~l~v 52 (59)
T PF09889_consen 37 KTQYIFFGIFILFLAV 52 (59)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455555444444333
No 66
>PRK10884 SH3 domain-containing protein; Provisional
Probab=58.10 E-value=1.1e+02 Score=25.52 Aligned_cols=87 Identities=13% Similarity=0.046 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc---------hhHHHH
Q 027280 130 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR---------KWMCIA 200 (225)
Q Consensus 130 R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r---------k~~~~~ 200 (225)
=..++.++...+.++. .+......+-.+-++.-+..+..-...-.+...+|..+..--..-. ..+=+|
T Consensus 98 le~el~~l~~~l~~~~---~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~~~wf 174 (206)
T PRK10884 98 LENQVKTLTDKLNNID---NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTIIMQWF 174 (206)
T ss_pred HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555554444444 4444444444444555555555555555566666666555443311 124688
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 027280 201 IIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 201 ~~i~~ii~~ii~~~i~~~~ 219 (225)
+..+.|+++.+++.++.|.
T Consensus 175 ~~Gg~v~~~GlllGlilp~ 193 (206)
T PRK10884 175 MYGGGVAGIGLLLGLLLPH 193 (206)
T ss_pred HHchHHHHHHHHHHHHhcc
Confidence 8899999999999998885
No 67
>PF14992 TMCO5: TMCO5 family
Probab=57.94 E-value=1.3e+02 Score=26.38 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 177 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 177 (225)
....+....+++.+++.+...++++=.|=+.-++.=.+.+.+||...+...-+.+
T Consensus 121 l~~~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~lLe~e 175 (280)
T PF14992_consen 121 LLESCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEMLLLEKE 175 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556667778888888888888888888888888777777888876665554443
No 68
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=57.44 E-value=23 Score=21.19 Aligned_cols=19 Identities=32% Similarity=0.852 Sum_probs=10.1
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 027280 194 RKWMCIAIIILLIIVAIIV 212 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ii~ 212 (225)
|.|+.+.+..+++++++|.
T Consensus 14 r~Wi~F~l~mi~vFi~li~ 32 (38)
T PF09125_consen 14 RGWIAFALAMILVFIALIG 32 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3566665555555554443
No 69
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=56.63 E-value=17 Score=23.51 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccCC
Q 027280 199 IAIIILLIIVAIIVVAVIKPWSSN 222 (225)
Q Consensus 199 ~~~~i~~ii~~ii~~~i~~~~~~~ 222 (225)
+++.+.++++++.+.+.++..++|
T Consensus 6 ~LIpiSl~l~~~~l~~f~Wavk~G 29 (51)
T TIGR00847 6 ILIPISLLLGGVGLVAFLWSLKSG 29 (51)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccC
Confidence 344444555555555555666665
No 70
>PRK02793 phi X174 lysis protein; Provisional
Probab=56.50 E-value=63 Score=22.21 Aligned_cols=47 Identities=13% Similarity=0.218 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
..|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777888888888888888888999999888888777776665544
No 71
>PRK00736 hypothetical protein; Provisional
Probab=56.27 E-value=61 Score=22.00 Aligned_cols=46 Identities=11% Similarity=0.242 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
.|..||..+.-.-+...+|+..|..|...||.+...+..-.+.+..
T Consensus 6 Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 6 RLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888888888999999999888877777666644
No 72
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=56.24 E-value=26 Score=24.57 Aligned_cols=19 Identities=21% Similarity=0.284 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027280 160 DMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 160 e~id~Ie~nv~~a~~~v~~ 178 (225)
..++.||.+....-.....
T Consensus 9 r~L~eiEr~L~~~DP~fa~ 27 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAA 27 (82)
T ss_pred HHHHHHHHHHHhcCcHHHH
Confidence 3788888888765554433
No 73
>PHA02692 hypothetical protein; Provisional
Probab=55.81 E-value=20 Score=24.68 Aligned_cols=9 Identities=22% Similarity=0.671 Sum_probs=3.9
Q ss_pred chhHHHHHH
Q 027280 194 RKWMCIAII 202 (225)
Q Consensus 194 rk~~~~~~~ 202 (225)
..|+.++++
T Consensus 43 ~~~~~~ii~ 51 (70)
T PHA02692 43 VPWTTVFLI 51 (70)
T ss_pred cchHHHHHH
Confidence 344444444
No 74
>KOG4331 consensus Polytopic membrane protein Prominin [General function prediction only]
Probab=55.07 E-value=2.4e+02 Score=28.58 Aligned_cols=56 Identities=18% Similarity=0.153 Sum_probs=31.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Q 027280 4 DVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKM 60 (225)
Q Consensus 4 ~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~ 60 (225)
..+.+.+.+..++.-.+.++..+...+.. +.+-.....++|+.+-.+|+.-++..+
T Consensus 250 ~l~~v~~~~~el~~~~~ave~m~~~L~~~-~s~~~~~~~~lr~~~~~sL~~llq~~~ 305 (865)
T KOG4331|consen 250 VLDYVLSAAQELREMSEAVENMNDTLDSL-GSQLNDGASKLRERVNASLKVLLQVVL 305 (865)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHhhHHHHHHHHHHHHHHHHHhHH
Confidence 35677777777777777766654433221 101112234677666666666555543
No 75
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=54.44 E-value=15 Score=30.93 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhccccCC
Q 027280 193 SRKWMCIAIIILLIIVAIIVVAVIKPWSSN 222 (225)
Q Consensus 193 ~rk~~~~~~~i~~ii~~ii~~~i~~~~~~~ 222 (225)
+++.+|++++.+++++..+++.+.. |+.+
T Consensus 207 r~Ra~~ffilal~~avta~~lt~gT-~s~a 235 (275)
T KOG4684|consen 207 RRRALLFFILALTVAVTAVILTMGT-ASVA 235 (275)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh-hhhc
Confidence 3567788787777777777776644 6554
No 76
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.15 E-value=54 Score=28.67 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 143 ELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 143 el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
+....-..-..++.+||+.|++||.|++........|.+.|..
T Consensus 90 e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~ 132 (273)
T KOG3065|consen 90 ESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTE 132 (273)
T ss_pred HHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHH
Confidence 3344445566678899999999999999998888888887754
No 77
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=53.25 E-value=21 Score=25.57 Aligned_cols=6 Identities=17% Similarity=0.230 Sum_probs=2.3
Q ss_pred HHHHHH
Q 027280 182 ALQKAK 187 (225)
Q Consensus 182 ~L~~A~ 187 (225)
+|.+-.
T Consensus 21 QL~qlV 26 (84)
T PF06143_consen 21 QLEQLV 26 (84)
T ss_pred HHHHHH
Confidence 344333
No 78
>COG2443 Sss1 Preprotein translocase subunit Sss1 [Intracellular trafficking and secretion]
Probab=52.65 E-value=71 Score=21.69 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027280 164 NIESQVSSAVDHVQSGNTALQKAKKLQK 191 (225)
Q Consensus 164 ~Ie~nv~~a~~~v~~~~~~L~~A~~~qk 191 (225)
.+++-.+...+++++...-|+.|++--+
T Consensus 3 ~~~~~~e~~~~~lke~~rvl~~arKP~~ 30 (65)
T COG2443 3 QMMDKPEELREFLKEYRRVLKVARKPDW 30 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 4566677888888888888887766544
No 79
>PRK04406 hypothetical protein; Provisional
Probab=50.87 E-value=82 Score=21.87 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
..|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 11 ERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35777888888888888888888999998888888777776655543
No 80
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=50.65 E-value=16 Score=29.24 Aligned_cols=16 Identities=25% Similarity=0.335 Sum_probs=9.5
Q ss_pred HHHHHHHHccccchhH
Q 027280 182 ALQKAKKLQKNSRKWM 197 (225)
Q Consensus 182 ~L~~A~~~qk~~rk~~ 197 (225)
.-....++||..+|++
T Consensus 17 ~y~as~~r~k~~~R~i 32 (161)
T PHA02673 17 NYVASVKRQKAIRRYI 32 (161)
T ss_pred chhhHHHHHHHHHHHH
Confidence 3334456777777764
No 81
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=49.46 E-value=1.7e+02 Score=29.77 Aligned_cols=22 Identities=18% Similarity=0.288 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHH
Q 027280 144 LQQIFLDMAVLVDAQGDMLDNI 165 (225)
Q Consensus 144 l~~lf~dl~~lV~~Qge~id~I 165 (225)
..+...+|+.++.+|..+.|.=
T Consensus 621 ~~q~m~~L~e~lr~QQ~L~D~t 642 (851)
T TIGR02302 621 MEQQMNKLGELMRKQQQLRDET 642 (851)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3666777777777787777754
No 82
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=48.89 E-value=11 Score=29.95 Aligned_cols=31 Identities=16% Similarity=0.323 Sum_probs=17.3
Q ss_pred HHHHccccchhHHHHHHHHHHHHHHHHHHHh
Q 027280 186 AKKLQKNSRKWMCIAIIILLIIVAIIVVAVI 216 (225)
Q Consensus 186 A~~~qk~~rk~~~~~~~i~~ii~~ii~~~i~ 216 (225)
|...+.+-+|..+++++.++++++||+++|+
T Consensus 125 ae~kr~K~Cki~~Li~~~vc~~ilVivVpi~ 155 (159)
T PF06789_consen 125 AELKRSKVCKIFALIVLAVCAVILVIVVPIC 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheEEEEEEEE
Confidence 3444556566666655555555555555553
No 83
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=48.69 E-value=48 Score=22.08 Aligned_cols=14 Identities=14% Similarity=0.306 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHc
Q 027280 177 QSGNTALQKAKKLQ 190 (225)
Q Consensus 177 ~~~~~~L~~A~~~q 190 (225)
+.|..-|.+--++|
T Consensus 9 ETA~~FL~RvGr~q 22 (60)
T PF06072_consen 9 ETATEFLRRVGRQQ 22 (60)
T ss_pred ccHHHHHHHHhHHH
Confidence 44556666665555
No 84
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=48.69 E-value=2.1e+02 Score=25.88 Aligned_cols=43 Identities=14% Similarity=0.193 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 136 DLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 136 ~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
.+.+.+......|.++..-+..-||.=-+++.......++.+.
T Consensus 112 sls~al~~~~~~fp~~~~~~i~~GE~sG~L~~~L~~~a~~~~~ 154 (399)
T TIGR02120 112 SLADALAQHPRDFPPLYRALVAAGEASGALDAVLERLADYLEE 154 (399)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 3445555545556666554545555555556556665555544
No 85
>PRK13865 type IV secretion system protein VirB8; Provisional
Probab=48.61 E-value=64 Score=27.37 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPWS 220 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~~ 220 (225)
|++.++.+++.++.++.++.+.|-+
T Consensus 41 w~va~~~~~~~~~~~~Av~~l~PLK 65 (229)
T PRK13865 41 AAVAGIAVAGNVAQAFAIATMVPLE 65 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4333333333333344444444443
No 86
>PRK10132 hypothetical protein; Provisional
Probab=48.17 E-value=1.1e+02 Score=22.75 Aligned_cols=16 Identities=19% Similarity=0.382 Sum_probs=9.7
Q ss_pred chhHHHHHHHHHHHHH
Q 027280 194 RKWMCIAIIILLIIVA 209 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ 209 (225)
++|.-+++..++=+++
T Consensus 85 ~Pw~svgiaagvG~ll 100 (108)
T PRK10132 85 RPWCSVGTAAAVGIFI 100 (108)
T ss_pred CcHHHHHHHHHHHHHH
Confidence 6888777655543333
No 87
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=47.31 E-value=46 Score=23.79 Aligned_cols=11 Identities=18% Similarity=0.863 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 027280 198 CIAIIILLIIV 208 (225)
Q Consensus 198 ~~~~~i~~ii~ 208 (225)
|++++++++++
T Consensus 41 c~~lVfVii~l 51 (84)
T PF06143_consen 41 CCFLVFVIIVL 51 (84)
T ss_pred HHHHHHHHHHH
Confidence 44333333333
No 88
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=47.11 E-value=2.2e+02 Score=25.72 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 137 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 137 ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
+...+.+ ..+|.++..-....||.-.+++.-+..+.++.++
T Consensus 316 ls~al~~-~~~fp~~~~~mi~~GE~sG~L~~~L~~~a~~~~~ 356 (399)
T TIGR02120 316 LSRALRA-TGLFPPLLVHMIASGEKSGQLETMLERAADNQER 356 (399)
T ss_pred HHHHHhc-CCCCCHHHHHHHHHHhhhccHHHHHHHHHHHHHH
Confidence 4444444 2256666666667788777777777666665543
No 89
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=46.85 E-value=84 Score=20.97 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH
Q 027280 167 SQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 167 ~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~ 213 (225)
...+...+.+.....-++.|.+--++-.+..+....++++++.++.+
T Consensus 5 ~~~e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~~iG~~i~G~iGf 51 (61)
T PRK09400 5 KLQENVKNFLEDYKRVLKVARKPTREEFLLVAKVTGLGILLIGLIGF 51 (61)
T ss_pred HHHHhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566667777777777777665555444444433333333333333
No 90
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=46.19 E-value=96 Score=21.33 Aligned_cols=13 Identities=31% Similarity=0.452 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 027280 197 MCIAIIILLIIVA 209 (225)
Q Consensus 197 ~~~~~~i~~ii~~ 209 (225)
+.+++++.+++.+
T Consensus 49 IlYG~v~Glii~~ 61 (70)
T PF04210_consen 49 ILYGLVIGLIIFI 61 (70)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555544443
No 91
>PRK02119 hypothetical protein; Provisional
Probab=45.54 E-value=99 Score=21.29 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
..|..||..+.-.-+...+|+..|..|...||.....+..-...+..
T Consensus 9 ~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 9 NRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888888889999999999888887776665544
No 92
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=45.35 E-value=1.1 Score=31.78 Aligned_cols=13 Identities=23% Similarity=0.777 Sum_probs=1.2
Q ss_pred ccccchhHHHHHH
Q 027280 190 QKNSRKWMCIAII 202 (225)
Q Consensus 190 qk~~rk~~~~~~~ 202 (225)
.++.++|+++++-
T Consensus 61 ~rkKrrwlwLlik 73 (81)
T PF14812_consen 61 PRKKRRWLWLLIK 73 (81)
T ss_dssp ----------TTT
T ss_pred ccccchhHHHHHH
Confidence 4444556555443
No 93
>PHA03240 envelope glycoprotein M; Provisional
Probab=45.32 E-value=20 Score=30.22 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=12.3
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 027280 195 KWMCIAIIILLIIVAIIVVA 214 (225)
Q Consensus 195 k~~~~~~~i~~ii~~ii~~~ 214 (225)
.-..|++++++||++||++.
T Consensus 211 aH~~WIiilIIiIiIIIL~c 230 (258)
T PHA03240 211 AHIAWIFIAIIIIIVIILFF 230 (258)
T ss_pred chHhHHHHHHHHHHHHHHHH
Confidence 35777777766666555543
No 94
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=45.30 E-value=1.6e+02 Score=23.53 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=48.0
Q ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 027280 119 QIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM-LDNIESQVSSAVDHVQSGNTALQ 184 (225)
Q Consensus 119 q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~-id~Ie~nv~~a~~~v~~~~~~L~ 184 (225)
++....+.++.=.+.|+.|......+..=|+-+.....++.+. ++.++.+|..-..-++.+.+.+.
T Consensus 73 ~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~ 139 (157)
T COG3352 73 QLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLR 139 (157)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3344555566666667777777777777777777788888887 89999999988877777766654
No 95
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=44.54 E-value=1.3e+02 Score=22.32 Aligned_cols=47 Identities=19% Similarity=0.235 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027280 130 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 176 (225)
Q Consensus 130 R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 176 (225)
.-+.|..|.+.+.-..+-...+..-+..||+.++.|..-+..-....
T Consensus 51 qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRL 97 (102)
T PF01519_consen 51 QGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRL 97 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666677777777777777777789999988887766654443
No 96
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=44.05 E-value=35 Score=23.86 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=4.4
Q ss_pred ccccCCCC
Q 027280 217 KPWSSNKG 224 (225)
Q Consensus 217 ~~~~~~~~ 224 (225)
..|++|+|
T Consensus 28 sk~~~~~g 35 (75)
T PF06667_consen 28 SKWKSSQG 35 (75)
T ss_pred HhcccCCC
Confidence 35666655
No 97
>PHA02819 hypothetical protein; Provisional
Probab=42.98 E-value=49 Score=22.77 Aligned_cols=28 Identities=14% Similarity=0.307 Sum_probs=19.8
Q ss_pred HHHccccchhHHHHHHHHHHHHHHHHHH
Q 027280 187 KKLQKNSRKWMCIAIIILLIIVAIIVVA 214 (225)
Q Consensus 187 ~~~qk~~rk~~~~~~~i~~ii~~ii~~~ 214 (225)
..+.++++++.-+.+++++++++++++.
T Consensus 34 ~s~~~~~~~~~~~~~~ii~l~~~~~~~~ 61 (71)
T PHA02819 34 ENYNKKTKKSFLRYYLIIGLVTIVFVII 61 (71)
T ss_pred CCCcccccCChhHHHHHHHHHHHHHHHH
Confidence 3466677788888888888776655543
No 98
>PF09164 VitD-bind_III: Vitamin D binding protein, domain III; InterPro: IPR015247 This domain is predominantly found in Vitamin D binding proteins, and adopts a multihelical structure. It is required for formation of an actin 'clamp', allowing the protein to bind to actin []. ; PDB: 1MA9_A 1KW2_A 1KXP_D 1J7E_A 1J78_A 1LOT_A.
Probab=42.76 E-value=35 Score=23.23 Aligned_cols=28 Identities=21% Similarity=0.389 Sum_probs=17.4
Q ss_pred HHHHHHHhhhhhcCCCCCChHHHHHhhhc
Q 027280 73 EYREVVERRVYTVTGKRADEETIDQLIET 101 (225)
Q Consensus 73 ~~k~~~~r~~~~i~~~~~t~eeie~~~e~ 101 (225)
+||+++..++. -.-|++++.++..|++.
T Consensus 13 EyKKrL~e~l~-~k~P~at~~~l~~lve~ 40 (68)
T PF09164_consen 13 EYKKRLAERLR-AKLPDATPTELKELVEK 40 (68)
T ss_dssp HHHHHHHHHHH-HH-TTS-HHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHCCCCCHHHHHHHHHH
Confidence 46666644332 22378999999999875
No 99
>PHA03164 hypothetical protein; Provisional
Probab=42.67 E-value=51 Score=23.12 Aligned_cols=11 Identities=36% Similarity=0.561 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 027280 206 IIVAIIVVAVI 216 (225)
Q Consensus 206 ii~~ii~~~i~ 216 (225)
|+.+++++.++
T Consensus 71 ILfiifvlyvF 81 (88)
T PHA03164 71 ILFIIFVLYVF 81 (88)
T ss_pred HHHHHHHHHhe
Confidence 33333334443
No 100
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=42.66 E-value=83 Score=19.60 Aligned_cols=52 Identities=13% Similarity=0.240 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 138 ERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 189 (225)
Q Consensus 138 e~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~ 189 (225)
.+.+..|.....++..+...=|.+|..=..-++....+++.+...+..|.+.
T Consensus 5 ~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~ 56 (60)
T cd00193 5 DEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666655555666666666666666655543
No 101
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.38 E-value=18 Score=31.71 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH
Q 027280 55 KFK-DKMGEFQVLRENIHQEYREVVE 79 (225)
Q Consensus 55 ~f~-~~~~~f~~~q~~~~~~~k~~~~ 79 (225)
+|. ++++.||.....| ..|.++++
T Consensus 66 ~~n~eaikkyqqT~~~f-~e~~e~~~ 90 (295)
T TIGR01478 66 KLNEEAIKKYQETHDPY-EQLQELVE 90 (295)
T ss_pred HHhHHHhhhhhhhcchH-HHHHHHHH
Confidence 344 3788888776666 45666664
No 102
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=42.33 E-value=23 Score=23.44 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhccccCC
Q 027280 201 IIILLIIVAIIVVAVIKPWSSN 222 (225)
Q Consensus 201 ~~i~~ii~~ii~~~i~~~~~~~ 222 (225)
+.+.++++.+++.+.++.-+||
T Consensus 8 ipvsi~l~~v~l~~flWavksg 29 (58)
T COG3197 8 IPVSILLGAVGLGAFLWAVKSG 29 (58)
T ss_pred HHHHHHHHHHHHHHHHHhcccC
Confidence 3334444444444456666776
No 103
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.15 E-value=1.2e+02 Score=25.27 Aligned_cols=24 Identities=25% Similarity=0.596 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~ 219 (225)
||-++.+++++++-+.=+.||+.+
T Consensus 177 ~~Sl~e~~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 177 WWSLLEIIAVVVISIAQVFILKFF 200 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455555544446666644
No 104
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=41.35 E-value=13 Score=35.92 Aligned_cols=54 Identities=13% Similarity=0.352 Sum_probs=15.7
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHHHHH
Q 027280 154 LVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR-KWMCIAIIILLIIVAIIV 212 (225)
Q Consensus 154 lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r-k~~~~~~~i~~ii~~ii~ 212 (225)
.+.-++|+ ..++..-.++...-.+|++-.+|..=-+ +||.|+++++.+++++.+
T Consensus 510 ~LNLt~EI-----~~Lq~~I~~LN~tlVdLe~Ln~~e~YiKWPWyVWL~i~~~li~~~~~ 564 (610)
T PF01601_consen 510 YLNLTSEI-----DELQEVIDNLNNTLVDLEWLNRYETYIKWPWYVWLAIILALIAFALI 564 (610)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHCCHHHCCHHTTCCCHH--------------------
T ss_pred eeccHHHH-----HHHHHHHHHhhhhheeHHHhcceeEEeehHHHHHHHHHHHHHHHHHH
Confidence 34445555 2233333344455556655544442211 566666555544444333
No 105
>PTZ00370 STEVOR; Provisional
Probab=41.07 E-value=20 Score=31.54 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=15.5
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHH
Q 027280 54 KKFK-DKMGEFQVLRENIHQEYREVVE 79 (225)
Q Consensus 54 ~~f~-~~~~~f~~~q~~~~~~~k~~~~ 79 (225)
.+|. +++..||.....| ..|.++++
T Consensus 64 d~~n~eaikkyqqT~~~f-~e~~e~~~ 89 (296)
T PTZ00370 64 DKMNEEAIKKYQQTHDPY-EQLKEVVE 89 (296)
T ss_pred HHHhHHHhhhhhhhcchH-HHHHHHHH
Confidence 3344 3777887776666 35666664
No 106
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=40.59 E-value=23 Score=24.55 Aligned_cols=17 Identities=35% Similarity=0.653 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027280 197 MCIAIIILLIIVAIIVV 213 (225)
Q Consensus 197 ~~~~~~i~~ii~~ii~~ 213 (225)
.+++.++++++++++++
T Consensus 5 ~~~~g~~~ll~~v~~~~ 21 (75)
T PF14575_consen 5 SIIVGVLLLLVLVIIVI 21 (75)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhheeEE
Confidence 34555555555444433
No 107
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.55 E-value=44 Score=23.32 Aligned_cols=7 Identities=0% Similarity=-0.040 Sum_probs=3.7
Q ss_pred cccCCCC
Q 027280 218 PWSSNKG 224 (225)
Q Consensus 218 ~~~~~~~ 224 (225)
.|+.|+|
T Consensus 29 k~~~~~~ 35 (75)
T TIGR02976 29 KRKTAAS 35 (75)
T ss_pred hhccCCC
Confidence 5555554
No 108
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=39.27 E-value=2.6e+02 Score=24.35 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcccc
Q 027280 170 SSAVDHVQSGNTALQKAKKLQKNS 193 (225)
Q Consensus 170 ~~a~~~v~~~~~~L~~A~~~qk~~ 193 (225)
....++-++-.+..++|.+-+|..
T Consensus 33 ~~~~e~~~~~~e~~~kaeeaqK~G 56 (306)
T PF04888_consen 33 KKAEEKAEEIEEAQEKAEEAQKAG 56 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555555555666666666663
No 109
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=39.25 E-value=1.2e+02 Score=24.12 Aligned_cols=61 Identities=10% Similarity=0.091 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHH
Q 027280 140 KLLELQQIFLDMAVL-VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKW-MCIAIIILLI 206 (225)
Q Consensus 140 ~i~el~~lf~dl~~l-V~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~-~~~~~~i~~i 206 (225)
+...|.++...|+.. ++.|-..++-. .++-....+.+..+. .++.|-.+.. .+.+++++++
T Consensus 106 d~e~L~~lg~~LG~~D~~~Q~k~i~l~---~~~L~~~~~~a~~~~---~~~~Klyr~LGvl~G~~lvIl 168 (170)
T PF09548_consen 106 DKEILLELGKSLGYSDREMQEKHIELY---LEQLEQQLEEAREEA---KKKGKLYRSLGVLGGLFLVIL 168 (170)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHH---HHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHH
Confidence 334444444444322 33444444333 333334444444443 3455556665 4444444444
No 110
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=39.18 E-value=49 Score=26.07 Aligned_cols=24 Identities=8% Similarity=-0.136 Sum_probs=9.9
Q ss_pred cccchhHHHHHHHHHHHHHHHHHH
Q 027280 191 KNSRKWMCIAIIILLIIVAIIVVA 214 (225)
Q Consensus 191 k~~rk~~~~~~~i~~ii~~ii~~~ 214 (225)
++...|+++++++++|+++.+++.
T Consensus 114 ~~~~~~~i~~~i~g~ll~i~~giy 137 (145)
T PF10661_consen 114 KKPISPTILLSIGGILLAICGGIY 137 (145)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444334433
No 111
>PF10814 DUF2562: Protein of unknown function (DUF2562); InterPro: IPR024245 This protein of unknown function appears to be found predominantly in Mycobacterium spp.
Probab=38.07 E-value=1.9e+02 Score=22.33 Aligned_cols=51 Identities=14% Similarity=0.307 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHHHHHHHHhc
Q 027280 167 SQVSSAVDHVQSGNTALQKAKKLQKNSR-KWMCIAIIILLIIVAIIVVAVIK 217 (225)
Q Consensus 167 ~nv~~a~~~v~~~~~~L~~A~~~qk~~r-k~~~~~~~i~~ii~~ii~~~i~~ 217 (225)
.-...|.+-|..==+-|+.|...++..+ .|++.++.++++..-.+.|.|+.
T Consensus 62 ~elaAAqevV~~LP~alq~aR~~~rr~rRplliagv~~~vLagGavAfsivR 113 (133)
T PF10814_consen 62 QELAAAQEVVANLPQALQGARRRRRRRRRPLLIAGVAVAVLAGGAVAFSIVR 113 (133)
T ss_pred hHHHHHHHHHhhhHHHHHHHHHhccccccchHHHHHHHHHHhccceEEEEee
Confidence 3344555555555566777777776644 45544433444444444444443
No 112
>PRK00846 hypothetical protein; Provisional
Probab=38.02 E-value=1.4e+02 Score=20.92 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSG 179 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~ 179 (225)
..|..||..+.-.-+...+|+..|..|...||.....+..-.+.+...
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356777777777778888888888888888888888777766666544
No 113
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=37.77 E-value=60 Score=19.53 Aligned_cols=6 Identities=17% Similarity=0.739 Sum_probs=2.5
Q ss_pred HHHHHH
Q 027280 197 MCIAII 202 (225)
Q Consensus 197 ~~~~~~ 202 (225)
+|++.+
T Consensus 11 lc~l~~ 16 (43)
T PF11395_consen 11 LCFLSF 16 (43)
T ss_pred HHHHHH
Confidence 344433
No 114
>PRK13872 conjugal transfer protein TrbF; Provisional
Probab=37.42 E-value=94 Score=26.06 Aligned_cols=9 Identities=0% Similarity=-0.425 Sum_probs=3.7
Q ss_pred HHHHHhccc
Q 027280 211 IVVAVIKPW 219 (225)
Q Consensus 211 i~~~i~~~~ 219 (225)
+.++.+.|.
T Consensus 57 ~av~~l~pl 65 (228)
T PRK13872 57 GGLVWQSAR 65 (228)
T ss_pred HHHHHhhcc
Confidence 334444443
No 115
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=37.41 E-value=42 Score=22.33 Aligned_cols=8 Identities=50% Similarity=0.596 Sum_probs=3.2
Q ss_pred HHHHHHHc
Q 027280 183 LQKAKKLQ 190 (225)
Q Consensus 183 L~~A~~~q 190 (225)
|.+-.+.+
T Consensus 33 l~ker~R~ 40 (64)
T COG4068 33 LNKERKRQ 40 (64)
T ss_pred HHHHHHHH
Confidence 44433333
No 116
>PRK09458 pspB phage shock protein B; Provisional
Probab=37.17 E-value=47 Score=23.20 Aligned_cols=7 Identities=14% Similarity=0.354 Sum_probs=3.7
Q ss_pred cccCCCC
Q 027280 218 PWSSNKG 224 (225)
Q Consensus 218 ~~~~~~~ 224 (225)
.|+++.|
T Consensus 29 k~~~~~~ 35 (75)
T PRK09458 29 KRQGSQG 35 (75)
T ss_pred cccCCCC
Confidence 4555554
No 117
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=37.05 E-value=50 Score=23.45 Aligned_cols=15 Identities=33% Similarity=0.488 Sum_probs=6.0
Q ss_pred chhHHHHHHHHHHHH
Q 027280 194 RKWMCIAIIILLIIV 208 (225)
Q Consensus 194 rk~~~~~~~i~~ii~ 208 (225)
.|+.++.++++.+++
T Consensus 12 ~kkFl~~l~~vfiia 26 (85)
T PF10749_consen 12 GKKFLLALAIVFIIA 26 (85)
T ss_pred hhHHHHHHHHHHHHH
Confidence 344443344443333
No 118
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=37.03 E-value=3.5e+02 Score=25.21 Aligned_cols=59 Identities=14% Similarity=0.238 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 127 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 127 i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
+.+-..+|..+++.|.+..+-+..|...+.++..-|+.|+..+-.+.....+..+.|..
T Consensus 40 l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~ 98 (420)
T COG4942 40 LKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIAD 98 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 34445577777777777777777777777777777777777777776666655555443
No 119
>PTZ00478 Sec superfamily; Provisional
Probab=37.01 E-value=1.4e+02 Score=21.24 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHH
Q 027280 162 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 162 id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~~ii~~ 213 (225)
.|.+++-++...+.+..+..-++++.+--++-....+....+++++.-+|.+
T Consensus 13 m~~~~~v~~~~~eF~kds~r~vkrctKPdrkEf~kiakat~iGf~imG~IGy 64 (81)
T PTZ00478 13 SNPVGYVVSGVQEFANDSRRLIRKCTKPDAKEYTNIAYACSVGFFIMGFIGY 64 (81)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777788888888888888766554444333444444444444333433
No 120
>PF08114 PMP1_2: ATPase proteolipid family; InterPro: IPR012589 This family consists of small proteolipids associated with the plasma membrane H+ ATPase. Two proteolipids (PMP1 and PMP2) are associated with the ATPase and both genes are similarly expressed in the wild-type strain of yeast. No modification of the level of transcription of one PMP gene is detected in a strain deleted of the other. Though both proteolipids show similarity with other small proteolipids associated with other cation -transporting ATPases, their functions remain unclear [].
Probab=36.97 E-value=30 Score=21.24 Aligned_cols=20 Identities=15% Similarity=0.496 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 027280 200 AIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 200 ~~~i~~ii~~ii~~~i~~~~ 219 (225)
++++.++.+.++.+++.++|
T Consensus 14 F~lVglv~i~iva~~iYRKw 33 (43)
T PF08114_consen 14 FCLVGLVGIGIVALFIYRKW 33 (43)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556666666
No 121
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=36.78 E-value=92 Score=19.52 Aligned_cols=27 Identities=26% Similarity=0.324 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 027280 136 DLERKLLELQQIFLDMAVLVDAQGDML 162 (225)
Q Consensus 136 ~ie~~i~el~~lf~dl~~lV~~Qge~i 162 (225)
.|-..+.+++.++.+|-.++.+|-.-+
T Consensus 5 ~l~~ql~~l~~~l~elk~~l~~Q~kE~ 31 (45)
T PF11598_consen 5 QLIKQLSELNQMLQELKELLRQQIKET 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677888888888888887775433
No 122
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.77 E-value=30 Score=31.31 Aligned_cols=23 Identities=22% Similarity=0.735 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcc
Q 027280 195 KWMCIAIIILLIIVAIIVVAVIKP 218 (225)
Q Consensus 195 k~~~~~~~i~~ii~~ii~~~i~~~ 218 (225)
.|+.++++++++++.++++| |+|
T Consensus 189 ~~~vl~~~fvl~tlaivLFP-LWP 211 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLFP-LWP 211 (372)
T ss_pred hHHHHHHHHHHHHHHHHhcc-cCc
Confidence 45555555555555555555 444
No 123
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=35.96 E-value=1.9e+02 Score=21.99 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 144 LQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 144 l~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
|.++|..|..|++.=..-.+.+|...-.|-..+..+..+|++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~~K~EKGNKAAGtRaRK~sleLeKLaK 46 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADAEKAEKGNKAAGTRARKASLELEKLAK 46 (123)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 456666666666543333456777777788888888888876544
No 124
>PHA02844 putative transmembrane protein; Provisional
Probab=35.84 E-value=48 Score=23.07 Aligned_cols=25 Identities=28% Similarity=0.285 Sum_probs=17.1
Q ss_pred HccccchhHHHHHHHHHHHHHHHHH
Q 027280 189 LQKNSRKWMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 189 ~qk~~rk~~~~~~~i~~ii~~ii~~ 213 (225)
+.+++.++.-+.+++++++++++++
T Consensus 38 ~~~~~~~~~~~~~~ii~i~~v~~~~ 62 (75)
T PHA02844 38 VNKNNVCSSSTKIWILTIIFVVFAT 62 (75)
T ss_pred ccccccCChhHHHHHHHHHHHHHHH
Confidence 5556677888888887766655543
No 125
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.77 E-value=2.8e+02 Score=23.70 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=11.3
Q ss_pred HHHHhhHHHHHHHHHHHH
Q 027280 154 LVDAQGDMLDNIESQVSS 171 (225)
Q Consensus 154 lV~~Qge~id~Ie~nv~~ 171 (225)
|+.+|.+.+|.|+..|..
T Consensus 146 m~~eQDe~Ld~ls~ti~r 163 (235)
T KOG3202|consen 146 MLQEQDEGLDGLSATVQR 163 (235)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677777766665544
No 126
>PF10027 DUF2269: Predicted integral membrane protein (DUF2269); InterPro: IPR018729 Members of this family of bacterial hypothetical integral membrane proteins have no known function.
Probab=35.68 E-value=45 Score=25.87 Aligned_cols=32 Identities=31% Similarity=0.705 Sum_probs=23.0
Q ss_pred HHHccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 027280 187 KKLQKNSRKWMCIAIIILLIIVAIIVVAVIKP 218 (225)
Q Consensus 187 ~~~qk~~rk~~~~~~~i~~ii~~ii~~~i~~~ 218 (225)
.+|++..++|..+..+..++.++++.+-++||
T Consensus 119 ~~y~~~~~~~~~~g~~~~~~~~~i~~LMV~KP 150 (150)
T PF10027_consen 119 PEYKRLFRRWFILGWIAFLLLVVIVVLMVFKP 150 (150)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 36667777888777777766666777777776
No 127
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=35.66 E-value=69 Score=27.57 Aligned_cols=47 Identities=13% Similarity=0.254 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Q 027280 162 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIV 208 (225)
Q Consensus 162 id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~ 208 (225)
+++|-..+++-..++++|.+.|.+-.+...+..+|++.+...+....
T Consensus 92 v~~i~~~v~~~~~~~e~a~~~l~~i~~~~~~y~~~l~~~~~g~~~~~ 138 (250)
T COG2966 92 VNRISRAVEHGRLDLEEAHKKLDEIQKQPLRYSRWLVLLMAGLAAAA 138 (250)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhhhCccccccHHHHHHHHHHHHH
Confidence 44555556666667888888888777677777788776655443333
No 128
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.57 E-value=1.2e+02 Score=25.60 Aligned_cols=31 Identities=16% Similarity=0.317 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccchhHH
Q 027280 168 QVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 198 (225)
Q Consensus 168 nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~ 198 (225)
.++.|.+-......+|.++.+--+...+.+|
T Consensus 164 ~L~rar~rL~~td~~lgkS~kiL~tM~RR~~ 194 (220)
T KOG1666|consen 164 QLERARERLRETDANLGKSRKILTTMTRRLI 194 (220)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHHHHHH
Confidence 4556666666666777776666665444433
No 129
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=35.55 E-value=2.3e+02 Score=22.56 Aligned_cols=60 Identities=7% Similarity=0.251 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 125 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 184 (225)
Q Consensus 125 ~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 184 (225)
..+.+-...+..+...+.++...+.+++.-+.+|...+..|...+......++.....+.
T Consensus 128 ~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~~~~~ 187 (213)
T PF00015_consen 128 ESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINESIEEISEISEQISASSE 187 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556777788888888888888888888888888887777666665555544433
No 130
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=35.44 E-value=47 Score=27.94 Aligned_cols=18 Identities=22% Similarity=0.737 Sum_probs=8.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 027280 196 WMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~ 213 (225)
..|+++|.|+++|..++|
T Consensus 131 LIClIIIAVLfLICT~Lf 148 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLF 148 (227)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555545444444443
No 131
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=35.31 E-value=86 Score=26.02 Aligned_cols=14 Identities=0% Similarity=0.188 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 027280 130 RHDAVRDLERKLLE 143 (225)
Q Consensus 130 R~~~i~~ie~~i~e 143 (225)
-++++..++..|..
T Consensus 106 W~~~i~~~~~~i~~ 119 (204)
T PF00517_consen 106 WEKEISNYTGNIYN 119 (204)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHH
Confidence 44444444444433
No 132
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=35.15 E-value=80 Score=23.11 Aligned_cols=26 Identities=23% Similarity=0.484 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHccccchhHHHHHHHH
Q 027280 178 SGNTALQKAKKLQKNSRKWMCIAIIIL 204 (225)
Q Consensus 178 ~~~~~L~~A~~~qk~~rk~~~~~~~i~ 204 (225)
.|..-|..+-.|..+ .+|.=++|+++
T Consensus 32 ~G~~YL~~~y~y~~s-h~WRN~GIli~ 57 (103)
T PF06422_consen 32 SGDDYLEESYGYSYS-HRWRNFGILIA 57 (103)
T ss_pred eHHHHHhhhcccccc-chhhhHHHHHH
Confidence 455667666666655 45644444433
No 133
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=35.14 E-value=4e+02 Score=25.31 Aligned_cols=52 Identities=13% Similarity=0.216 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 127 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 127 i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
+..-...+..|...+.++.+++.+++.-+.+|...++.|..++.....-++.
T Consensus 435 ~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~eq~~~~~~i~~~i~~i~~~~~~ 486 (554)
T PRK15041 435 VESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQ 486 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556788889999999999999999999999999998888776665554
No 134
>PF03653 UPF0093: Uncharacterised protein family (UPF0093); InterPro: IPR005265 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments). There is some indirect indication of a link between this protein and the function or assembly of cytochromes: in Escherichia coli, strains overproducing this protein turn pink, perhaps because of an excess of accumulated haems [].
Probab=34.97 E-value=39 Score=26.48 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=15.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccc
Q 027280 194 RKWMCIAIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ii~~~i~~~~ 219 (225)
+.+.++--+..+++++|++++++|||
T Consensus 122 ~~~r~~nei~~ll~i~Iv~lvv~KPF 147 (147)
T PF03653_consen 122 KFFRIFNEIPTLLLIAIVILVVVKPF 147 (147)
T ss_pred HHHHHHhHHHHHHHHHHHHHheeCCC
Confidence 33444444555555566777778886
No 135
>PHA02675 ORF104 fusion protein; Provisional
Probab=34.95 E-value=1.7e+02 Score=20.92 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027280 138 ERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 176 (225)
Q Consensus 138 e~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 176 (225)
|.-+..|-+.|..+......-++.|+++|.+.+.....+
T Consensus 36 e~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~M 74 (90)
T PHA02675 36 EERLVSLLDSYKTITDCCRETGARLDRLERHLETLREAL 74 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444557788888888889999999999988754443
No 136
>PRK01844 hypothetical protein; Provisional
Probab=34.66 E-value=50 Score=22.89 Aligned_cols=20 Identities=15% Similarity=0.351 Sum_probs=8.7
Q ss_pred hHHHHHH-HHHHHHHHHHHHH
Q 027280 196 WMCIAII-ILLIIVAIIVVAV 215 (225)
Q Consensus 196 ~~~~~~~-i~~ii~~ii~~~i 215 (225)
|++|++. +.+++.+++.+++
T Consensus 4 ~~~I~l~I~~li~G~~~Gff~ 24 (72)
T PRK01844 4 WLGILVGVVALVAGVALGFFI 24 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4433333 3344444444554
No 137
>PF07412 Geminin: Geminin; InterPro: IPR022786 This family contains the eukaryotic protein geminin (approximately 200 residues long). Geminin inhibits DNA replication by preventing the incorporation of MCM complex into prereplication complex, and is degraded during the mitotic phase of the cell cycle. It has been proposed that geminin inhibits DNA replication during S, G2, and M phases and that geminin destruction at the metaphase-anaphase transition permits replication in the succeeding cell cycle []. ; GO: 0008156 negative regulation of DNA replication; PDB: 1T6F_B 2LP0_B 1UII_B 2WVR_B 2ZXX_B.
Probab=34.50 E-value=1.4e+02 Score=24.82 Aligned_cols=66 Identities=18% Similarity=0.333 Sum_probs=34.2
Q ss_pred cCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 027280 101 TGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIES 167 (225)
Q Consensus 101 ~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~ 167 (225)
.+-++.++.. +...++..+..+|.+-+.=|.+|..++..|..|.+--.+|..++.+=..+.+.|+.
T Consensus 102 e~Pse~YWk~-lAE~RR~AL~eaL~ENe~Lh~~ie~~~eEi~~lk~en~~L~elae~~~~la~~ie~ 167 (200)
T PF07412_consen 102 EGPSENYWKE-LAEERRKALEEALEENEKLHKEIEQKDEEIAKLKEENEELKELAEHVQYLAEVIER 167 (200)
T ss_dssp SSCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556653 33344444455666666666666666666665555544444444444444444443
No 138
>PHA02650 hypothetical protein; Provisional
Probab=33.90 E-value=63 Score=22.80 Aligned_cols=22 Identities=36% Similarity=0.499 Sum_probs=15.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 027280 192 NSRKWMCIAIIILLIIVAIIVV 213 (225)
Q Consensus 192 ~~rk~~~~~~~i~~ii~~ii~~ 213 (225)
++.+|.-+.+++++++++++++
T Consensus 42 ~~~~~~~~~~~ii~i~~v~i~~ 63 (81)
T PHA02650 42 KSVSWFNGQNFIFLIFSLIIVA 63 (81)
T ss_pred cccCCchHHHHHHHHHHHHHHH
Confidence 5567888888888877665553
No 139
>COG1314 SecG Preprotein translocase subunit SecG [Intracellular trafficking and secretion]
Probab=33.42 E-value=59 Score=23.28 Aligned_cols=13 Identities=8% Similarity=0.488 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHhc
Q 027280 205 LIIVAIIVVAVIK 217 (225)
Q Consensus 205 ~ii~~ii~~~i~~ 217 (225)
+++++++++.++.
T Consensus 10 i~~a~~LI~~VLl 22 (86)
T COG1314 10 IVVALALIILVLL 22 (86)
T ss_pred HHHHHHHHHheee
Confidence 3333334444444
No 140
>TIGR00327 secE_euk_arch protein translocase SEC61 complex gamma subunit, archaeal and eukaryotic. This model describes archaeal SEC61-like and eukaryotic SEC61 but not bacterial secE proteins, for which a Pfam pfam00584 (SecE) has been created.
Probab=33.16 E-value=1.3e+02 Score=20.14 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHH
Q 027280 170 SSAVDHVQSGNTALQKAKKLQKNSRKWMCIAIIIL 204 (225)
Q Consensus 170 ~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~ 204 (225)
+...+.+.....-++.|.+--++-....+....++
T Consensus 4 e~~~~f~k~~~r~lk~~~KPd~~Ef~~iak~t~iG 38 (61)
T TIGR00327 4 EAPVEFIKEGTRVLAVCKKPDLEEYLKVAKVTGIG 38 (61)
T ss_pred chHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44566677777777776665554444433333333
No 141
>PRK09793 methyl-accepting protein IV; Provisional
Probab=33.02 E-value=4.2e+02 Score=24.95 Aligned_cols=50 Identities=14% Similarity=0.204 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
...+..|...+.++.+.+.+++..+.+|...++.|..+++....-+++..
T Consensus 435 ~~~~~~i~~~~~~~~~~~~~i~~~~~e~~~~~~~i~~~i~~i~~~~~~~~ 484 (533)
T PRK09793 435 AATMTDIVSSVTRVNDIMGEIASASEEQRRGIEQVAQAVSQMDQVTQQNA 484 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888899999999999999999999888888777665555443
No 142
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=32.69 E-value=72 Score=22.84 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~ 219 (225)
.+-|+++++.|+=+|++++|+.+-
T Consensus 21 llRYGLf~GAIFQliCilAiI~~~ 44 (85)
T PF06783_consen 21 LLRYGLFVGAIFQLICILAIILPI 44 (85)
T ss_pred HHHHHHHHHHHHHHHHHHheeeec
Confidence 355778888888888888877764
No 143
>PF15102 TMEM154: TMEM154 protein family
Probab=32.58 E-value=33 Score=27.10 Aligned_cols=6 Identities=17% Similarity=-0.030 Sum_probs=2.5
Q ss_pred hccccC
Q 027280 216 IKPWSS 221 (225)
Q Consensus 216 ~~~~~~ 221 (225)
.+.|+.
T Consensus 82 ~kRkr~ 87 (146)
T PF15102_consen 82 YKRKRT 87 (146)
T ss_pred Eeeccc
Confidence 344443
No 144
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.53 E-value=1.1e+02 Score=25.65 Aligned_cols=11 Identities=45% Similarity=0.758 Sum_probs=5.8
Q ss_pred hhHHHHHHHHH
Q 027280 158 QGDMLDNIESQ 168 (225)
Q Consensus 158 Qge~id~Ie~n 168 (225)
-|-|+++||-=
T Consensus 138 k~vM~eNIekv 148 (217)
T KOG0859|consen 138 KGVMMENIEKV 148 (217)
T ss_pred HHHHHHHHHHH
Confidence 45555555543
No 145
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=32.39 E-value=1.4e+02 Score=19.13 Aligned_cols=51 Identities=8% Similarity=0.227 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNT 181 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~ 181 (225)
+..+..|..-..+++.+..+=+.++..=...+|....++..+...+.++.+
T Consensus 10 ~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~ 60 (63)
T PF05739_consen 10 EQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALK 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555566666666666666666666666666544
No 146
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=32.29 E-value=99 Score=24.84 Aligned_cols=33 Identities=6% Similarity=0.194 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccchhHH
Q 027280 166 ESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 198 (225)
Q Consensus 166 e~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~ 198 (225)
-.++....-..+++.++|++-.+......+|..
T Consensus 74 ~~~~~~~~~~~~ea~~~L~~I~~~~~~y~~~~~ 106 (193)
T PF06738_consen 74 SRRIVAGQLSLEEAIERLDEIDREPPRYPPWLV 106 (193)
T ss_pred HHHHhcCCCCHHHHHHHHHHHhhCCCCCCHHHH
Confidence 333444444567788888777666645555643
No 147
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=32.12 E-value=1.5e+02 Score=19.50 Aligned_cols=63 Identities=6% Similarity=0.092 Sum_probs=33.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQV 65 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~ 65 (225)
++....+...+..++..+..|+.....+... =.+..+....-.-..+..-..++.+.+.++..
T Consensus 10 ~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~-W~G~a~~af~~~~~~~~~~~~~~~~~L~~~~~ 72 (86)
T PF06013_consen 10 RAAAQQLQAQADELQSQLQQLESSIDSLQAS-WQGEAADAFQDKFEEWNQAFRQLNEALEELSQ 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-BTSSTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777888888888888888776555211 01223333444433344444444444444443
No 148
>TIGR00701 conserved hypothetical integral membrane protein. It appears this conserved hypothetical integral membrane protein is found only in gram negative bacteria. Completed genomes that include a member of this family include Rickettsia prowazekii, Synechocystis sp. PCC6803, and Helicobacter pylori. These proteins have 3 (Helicobacter pylori) to 5 (Synechocystis sp. PCC 6803) GES predicted transmembrane regions. Most members have 4 GES predicted transmembrane regions.
Probab=31.95 E-value=45 Score=26.10 Aligned_cols=25 Identities=20% Similarity=0.546 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPWS 220 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~~ 220 (225)
+.++--+..++++++++++++||+.
T Consensus 118 ~r~~ne~p~llli~iV~lvV~KPf~ 142 (142)
T TIGR00701 118 YRIVNEAPTILMVIIVILVVVKPFD 142 (142)
T ss_pred HHHHHHHHHHHHHHHHHheeeCCCC
Confidence 4444455556666677777889873
No 149
>PHA02849 putative transmembrane protein; Provisional
Probab=31.83 E-value=59 Score=22.88 Aligned_cols=24 Identities=17% Similarity=0.408 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~ 219 (225)
.+.+.+++++|++++.++.-|..|
T Consensus 17 v~vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 17 VTVILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555
No 150
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=31.52 E-value=3.9e+02 Score=24.09 Aligned_cols=42 Identities=12% Similarity=0.102 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027280 135 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 177 (225)
Q Consensus 135 ~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 177 (225)
..+.+.+.+.. .|..+..-...-||.--+++.-++...++.+
T Consensus 313 ~sls~al~~~~-~fp~~~~~~i~~GE~sG~L~~~L~~la~~~~ 354 (399)
T PRK10573 313 IPLWLALKNHP-LFPPLCLQLVRVGEESGSLDLMLENLAHWHQ 354 (399)
T ss_pred ccHHHHHhhCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34555555544 6666665556667665555555555544443
No 151
>PRK00523 hypothetical protein; Provisional
Probab=30.64 E-value=65 Score=22.33 Aligned_cols=11 Identities=45% Similarity=0.395 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 027280 205 LIIVAIIVVAV 215 (225)
Q Consensus 205 ~ii~~ii~~~i 215 (225)
+++.+++.+++
T Consensus 15 li~G~~~Gffi 25 (72)
T PRK00523 15 LIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 152
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.45 E-value=1.8e+02 Score=19.77 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027280 163 DNIESQVSSAVDHVQSGNTALQKAKKLQK 191 (225)
Q Consensus 163 d~Ie~nv~~a~~~v~~~~~~L~~A~~~qk 191 (225)
|+++.-++-..+++..+..-+++..+--+
T Consensus 2 ~~~~~~~~~~~~f~k~s~rf~krC~KPdr 30 (67)
T KOG3498|consen 2 DQVDQLVEPLRDFAKDSIRFVKRCTKPDR 30 (67)
T ss_pred chHHHhcchHHHHHHHHHHHHHHhcCCcH
Confidence 45666677778888888877766544433
No 153
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=30.39 E-value=1.5e+02 Score=21.17 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCC-CCCCCcHHHHHHHHHHHHHHHHHH
Q 027280 5 VDEVGKISRFIKSKIEELDRENLTSRQKP-GCGKGTGVDRSRTATTLGLKKKFK 57 (225)
Q Consensus 5 ~~ei~~l~~~ik~~l~~l~~~~~~~~~~~-~~~~~s~e~rir~~~~~~L~~~f~ 57 (225)
..++......|..+|+.|++.+......| .++-+..+..-|+..+..+..++.
T Consensus 41 ~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~ 94 (97)
T PF09177_consen 41 KRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIK 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555666655543332222 112223345555555555555444
No 154
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=30.33 E-value=3.3e+02 Score=22.84 Aligned_cols=26 Identities=12% Similarity=0.581 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccc
Q 027280 195 KWMCIAIIILLIIVAIIVVAVIKPWS 220 (225)
Q Consensus 195 k~~~~~~~i~~ii~~ii~~~i~~~~~ 220 (225)
-|-.++++.+=+++++++.+++=||+
T Consensus 152 TwgT~~lmgvNvllFl~~~~~~EPwk 177 (207)
T PF05546_consen 152 TWGTWGLMGVNVLLFLVAQLLVEPWK 177 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 46666677776666666666777986
No 155
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=30.30 E-value=1.4e+02 Score=25.63 Aligned_cols=9 Identities=33% Similarity=0.892 Sum_probs=3.8
Q ss_pred HHHHHHhcc
Q 027280 210 IIVVAVIKP 218 (225)
Q Consensus 210 ii~~~i~~~ 218 (225)
++.++++.|
T Consensus 58 ~~~Ia~llP 66 (239)
T COG3736 58 VIAIAILLP 66 (239)
T ss_pred HHHHHhhcc
Confidence 344444444
No 156
>COG1930 CbiN ABC-type cobalt transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=30.08 E-value=79 Score=23.00 Aligned_cols=16 Identities=13% Similarity=0.112 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 027280 199 IAIIILLIIVAIIVVA 214 (225)
Q Consensus 199 ~~~~i~~ii~~ii~~~ 214 (225)
.++++.+|+++.+++.
T Consensus 8 ~ll~i~~i~~l~li~~ 23 (97)
T COG1930 8 NLLAIGIILALPLIPF 23 (97)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333444444434333
No 157
>COG5278 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=29.91 E-value=3.3e+02 Score=22.75 Aligned_cols=12 Identities=33% Similarity=0.446 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 027280 128 QERHDAVRDLER 139 (225)
Q Consensus 128 ~~R~~~i~~ie~ 139 (225)
+++++-+..++.
T Consensus 104 p~~~~~l~~l~~ 115 (207)
T COG5278 104 PELLESLDDLEP 115 (207)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 158
>PHA03164 hypothetical protein; Provisional
Probab=29.80 E-value=57 Score=22.90 Aligned_cols=38 Identities=24% Similarity=0.349 Sum_probs=17.5
Q ss_pred HHHHccccchhHHHHHHHHHHH-HHHHHHHHhccccCCC
Q 027280 186 AKKLQKNSRKWMCIAIIILLII-VAIIVVAVIKPWSSNK 223 (225)
Q Consensus 186 A~~~qk~~rk~~~~~~~i~~ii-~~ii~~~i~~~~~~~~ 223 (225)
|..-.++.||-..++++.+++| .+.+++.++--|.-|.
T Consensus 47 awnlwnnrRktftFlvLtgLaIamILfiifvlyvFnVnr 85 (88)
T PHA03164 47 AWNLWNNRRKTFTFLVLTGLAIAMILFIIFVLYVFNVNR 85 (88)
T ss_pred hHHHHHhhhheeehHHHHHHHHHHHHHHHHHHHheeecc
Confidence 3344444444444444444444 4444455565664443
No 159
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.44 E-value=4.5e+02 Score=24.18 Aligned_cols=56 Identities=21% Similarity=0.340 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
.+..+...-++=..+-+.+......|.++-.....-||.--+++.-++...+|.++
T Consensus 96 ~l~~i~~~l~~G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~ 151 (397)
T COG1459 96 VLTSILEELESGKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEK 151 (397)
T ss_pred HHHHHHHHHHCCCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33334333333344555555666666666666666666665665555555555543
No 160
>PF15106 TMEM156: TMEM156 protein family
Probab=29.37 E-value=49 Score=27.82 Aligned_cols=21 Identities=14% Similarity=0.442 Sum_probs=8.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHH
Q 027280 194 RKWMCIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ii~~~i 215 (225)
-|..|+.+++++ +++.|+++|
T Consensus 174 mKITWYvLVllV-fiflii~iI 194 (226)
T PF15106_consen 174 MKITWYVLVLLV-FIFLIILII 194 (226)
T ss_pred hhhHHHHHHHHH-HHHHHHHHH
Confidence 355555444333 333344444
No 161
>PHA02414 hypothetical protein
Probab=29.27 E-value=2.3e+02 Score=20.82 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 176 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 176 (225)
+-..|+..+.||.+|..-+..-+.-|.|---.|-|.++.-.+.+
T Consensus 30 dn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i 73 (111)
T PHA02414 30 DNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKI 73 (111)
T ss_pred chHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHH
Confidence 45678889999999998888888888888778888877644443
No 162
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=29.21 E-value=18 Score=31.86 Aligned_cols=19 Identities=26% Similarity=0.349 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhccccCCC
Q 027280 205 LIIVAIIVVAVIKPWSSNK 223 (225)
Q Consensus 205 ~ii~~ii~~~i~~~~~~~~ 223 (225)
++|+.+|+...++..++||
T Consensus 159 LLIA~iIa~icyrrkR~GK 177 (290)
T PF05454_consen 159 LLIAGIIACICYRRKRKGK 177 (290)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHhhhhhhccc
Confidence 3333333333344445554
No 163
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=28.87 E-value=95 Score=19.19 Aligned_cols=17 Identities=18% Similarity=0.436 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027280 196 WMCIAIIILLIIVAIIV 212 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~ 212 (225)
|.++++.+++++++++.
T Consensus 8 W~sYg~t~~~l~~l~~~ 24 (46)
T PF04995_consen 8 WSSYGVTALVLAGLIVW 24 (46)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666665555443
No 164
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=28.87 E-value=2.2e+02 Score=26.68 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 027280 129 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQ 177 (225)
Q Consensus 129 ~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~ 177 (225)
.|....+.|+..-..++.|..+.-.|+..|...|...|.++.....-|.
T Consensus 52 tk~~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~ 100 (483)
T KOG2546|consen 52 TKAYTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVD 100 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhe
Confidence 3556777888888999999999999999999999999999998776654
No 165
>PRK11901 hypothetical protein; Reviewed
Probab=28.73 E-value=56 Score=29.24 Aligned_cols=24 Identities=38% Similarity=0.632 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHH-hc
Q 027280 194 RKWMCIAIIILLIIVAIIVVAV-IK 217 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ii~~~i-~~ 217 (225)
|.-++|++-|+++++|||.|.. ||
T Consensus 35 RQh~MiGiGilVLlLLIi~IgSALk 59 (327)
T PRK11901 35 RQHMMIGIGILVLLLLIIAIGSALK 59 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4456666666666665555553 55
No 166
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=28.65 E-value=73 Score=22.00 Aligned_cols=9 Identities=33% Similarity=0.394 Sum_probs=5.3
Q ss_pred HHccccchh
Q 027280 188 KLQKNSRKW 196 (225)
Q Consensus 188 ~~qk~~rk~ 196 (225)
+|-+++|+-
T Consensus 8 ~Y~rrSr~~ 16 (72)
T PF13198_consen 8 EYPRRSRKT 16 (72)
T ss_pred HccchhHHH
Confidence 566666653
No 167
>PRK13887 conjugal transfer protein TrbF; Provisional
Probab=28.17 E-value=1.6e+02 Score=25.14 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=9.7
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHhccc
Q 027280 195 KWMCIAII-ILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 195 k~~~~~~~-i~~ii~~ii~~~i~~~~ 219 (225)
.|+++.++ +++.++.++.++.+.|.
T Consensus 54 ~w~v~a~~~~~ia~~~v~av~~l~pl 79 (250)
T PRK13887 54 TWQVVGILSLLIALAAVGGVIHIGSQ 79 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45543332 33333333334444444
No 168
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=27.23 E-value=3.9e+02 Score=22.76 Aligned_cols=28 Identities=7% Similarity=0.101 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcccc-chh
Q 027280 169 VSSAVDHVQSGNTALQKAKKLQKNS-RKW 196 (225)
Q Consensus 169 v~~a~~~v~~~~~~L~~A~~~qk~~-rk~ 196 (225)
+..+.--++....-|..+.+.-.+- .+|
T Consensus 185 l~~~~k~~D~N~~~L~~~Serve~y~ksk 213 (244)
T KOG2678|consen 185 LGAAEKGIDVNSQGLMDVSERVEKYDKSK 213 (244)
T ss_pred HHHHHHHHhHHHHHHHhhhHHHHHHHHhh
Confidence 3334444445555555555554443 344
No 169
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=27.20 E-value=5.1e+02 Score=24.01 Aligned_cols=8 Identities=13% Similarity=0.206 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 027280 166 ESQVSSAV 173 (225)
Q Consensus 166 e~nv~~a~ 173 (225)
+.+++.-.
T Consensus 352 qEalEscq 359 (455)
T KOG3850|consen 352 QEALESCQ 359 (455)
T ss_pred HHHHHHHH
Confidence 33333333
No 170
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.02 E-value=2.2e+02 Score=26.18 Aligned_cols=42 Identities=10% Similarity=0.120 Sum_probs=25.8
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027280 150 DMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 191 (225)
Q Consensus 150 dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk 191 (225)
-++..+...+...+....++-.+-+....=..-|.+..+|.+
T Consensus 109 sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e 150 (397)
T COG1459 109 SLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLE 150 (397)
T ss_pred cHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 355566677777888888877777765544444444444443
No 171
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=26.89 E-value=5.4e+02 Score=24.22 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 129 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 129 ~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
.=.+.+..+...+.++.+.+.+++..+.+|...++.|..+++....-+++
T Consensus 435 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~ 484 (553)
T PRK15048 435 SAGETMNNIVNAVTRVTDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQ 484 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677888999999999999999999999999998888777666653
No 172
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.94 E-value=2e+02 Score=18.86 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 127 IQERHDAVRDLERKLLELQQIFLDM 151 (225)
Q Consensus 127 i~~R~~~i~~ie~~i~el~~lf~dl 151 (225)
.++=.+.+..|++++.+|-.||.-.
T Consensus 23 n~~i~~~ve~i~envk~ll~lYE~V 47 (55)
T PF05377_consen 23 NEEISESVEKIEENVKDLLSLYEVV 47 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444456677777777777766543
No 173
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=25.77 E-value=2.8e+02 Score=20.60 Aligned_cols=24 Identities=4% Similarity=0.263 Sum_probs=11.7
Q ss_pred HHHHHccccchhHHHHHHHHHHHHH
Q 027280 185 KAKKLQKNSRKWMCIAIIILLIIVA 209 (225)
Q Consensus 185 ~A~~~qk~~rk~~~~~~~i~~ii~~ 209 (225)
.|..|-.- ++|.-+++...+=+++
T Consensus 74 ~tD~yV~e-~PWq~VGvaAaVGlll 97 (104)
T COG4575 74 ATDDYVRE-NPWQGVGVAAAVGLLL 97 (104)
T ss_pred HHHHHHHc-CCchHHHHHHHHHHHH
Confidence 33344433 5777666554443333
No 174
>PHA02657 hypothetical protein; Provisional
Probab=25.76 E-value=82 Score=22.60 Aligned_cols=24 Identities=17% Similarity=0.541 Sum_probs=13.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~ 219 (225)
.+.+.+++++|.+++.++.-|..|
T Consensus 27 imVitvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 27 ILVFTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555556666
No 175
>PF00482 T2SF: Type II secretion system (T2SS), protein F; InterPro: IPR018076 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) [], have been found to be evolutionary related. These are proteins of about 400 amino acids that are highly hydrophobic and which are thought to be integral protein of the inner membrane. Proteins with this domain form a platform for the type II secretion machinery, as well as the type IV pili and the archaeal flagellae [].; PDB: 2VMA_A 3C1Q_A 2VMB_B 2WHN_B.
Probab=25.48 E-value=2.4e+02 Score=19.71 Aligned_cols=10 Identities=30% Similarity=0.634 Sum_probs=3.3
Q ss_pred HhhHHHHHHH
Q 027280 157 AQGDMLDNIE 166 (225)
Q Consensus 157 ~Qge~id~Ie 166 (225)
.-|.+-+.++
T Consensus 72 ~g~~~~~~l~ 81 (124)
T PF00482_consen 72 SGGDLSEVLE 81 (124)
T ss_dssp HHT-HHHHHH
T ss_pred hCCcHHHHHH
Confidence 3333333333
No 176
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=25.05 E-value=1.1e+02 Score=22.64 Aligned_cols=27 Identities=15% Similarity=0.399 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccccCC
Q 027280 196 WMCIAIIILLIIVAIIVVAVIKPWSSN 222 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~~~~~~ 222 (225)
|++...-|++|++++..|..|...++-
T Consensus 69 ~L~~~~ti~lv~~~~~~I~lL~svG~e 95 (103)
T PF12955_consen 69 WLFAGFTIALVVLVAGAIGLLFSVGSE 95 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 344444455555555556666666543
No 177
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels.
Probab=24.79 E-value=1.2e+02 Score=21.26 Aligned_cols=26 Identities=12% Similarity=0.392 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhcccc
Q 027280 195 KWMCIAIIILLIIVAIIVVAVIKPWS 220 (225)
Q Consensus 195 k~~~~~~~i~~ii~~ii~~~i~~~~~ 220 (225)
|.+|=+++++++++.++++|+...+-
T Consensus 46 R~~WD~~m~~~~~~~~~~iP~~isF~ 71 (77)
T PF08412_consen 46 RFYWDLIMLILLLYNLIIIPFRISFF 71 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhheEe
Confidence 44555555666666667777655553
No 178
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=24.51 E-value=1.3e+02 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.538 Sum_probs=9.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q 027280 196 WMCIAIIILLIIVAIIV 212 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~ 212 (225)
|.++++.+++++++++.
T Consensus 9 W~sYg~t~l~l~~li~~ 25 (45)
T TIGR03141 9 WLAYGITALVLAGLILW 25 (45)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666666555554433
No 179
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=24.45 E-value=3.9e+02 Score=21.77 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 027280 6 DEVGKISRFIKSKIEELDR 24 (225)
Q Consensus 6 ~ei~~l~~~ik~~l~~l~~ 24 (225)
+.|+.++..||+-|+..+.
T Consensus 124 eTIK~IASaIKkLLd~vN~ 142 (207)
T KOG4025|consen 124 ETIKLIASAIKKLLDAVNA 142 (207)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888855
No 180
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.27 E-value=1.5e+02 Score=19.35 Aligned_cols=21 Identities=19% Similarity=0.471 Sum_probs=11.2
Q ss_pred ccchhHHHHHHHHHHHHHHHH
Q 027280 192 NSRKWMCIAIIILLIIVAIIV 212 (225)
Q Consensus 192 ~~rk~~~~~~~i~~ii~~ii~ 212 (225)
--|.|..+++++++++.+..+
T Consensus 27 PFrP~~Ll~~li~Vv~gl~ll 47 (55)
T PF11293_consen 27 PFRPWRLLIVLIVVVIGLGLL 47 (55)
T ss_pred CcchHHHHHHHHHHHHHHHHH
Confidence 345666665555555554443
No 181
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=24.07 E-value=7.5e+02 Score=24.94 Aligned_cols=46 Identities=11% Similarity=0.234 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHHHHHHHH
Q 027280 137 LERKLLELQQIFLDMAVLVDAQGDMLDN-IESQVSSAVDHVQSGNTA 182 (225)
Q Consensus 137 ie~~i~el~~lf~dl~~lV~~Qge~id~-Ie~nv~~a~~~v~~~~~~ 182 (225)
....+.++.........-+..+.+.+-. +..++......++.....
T Consensus 355 t~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~ 401 (806)
T PF05478_consen 355 TSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRS 401 (806)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhc
Confidence 3344445555555566666666555544 345555555555444333
No 182
>COG4640 Predicted membrane protein [Function unknown]
Probab=24.02 E-value=83 Score=29.06 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 027280 178 SGNTALQK 185 (225)
Q Consensus 178 ~~~~~L~~ 185 (225)
+|++.+..
T Consensus 31 qan~~tn~ 38 (465)
T COG4640 31 QANKSTNE 38 (465)
T ss_pred hhhHHHHH
Confidence 34444433
No 183
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.84 E-value=1.4e+02 Score=22.75 Aligned_cols=30 Identities=17% Similarity=0.429 Sum_probs=24.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 122 DTLAEIQERHDAVRDLERKLLELQQIFLDM 151 (225)
Q Consensus 122 ~~l~~i~~R~~~i~~ie~~i~el~~lf~dl 151 (225)
..|..+=++.+++..|.-+|.||.+||...
T Consensus 86 t~LellGEK~E~veEL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 86 TLLELLGEKSEEVEELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778889999999999999999874
No 184
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=23.66 E-value=8e+02 Score=25.06 Aligned_cols=27 Identities=22% Similarity=0.382 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 027280 139 RKLLELQQIFLDMAVLVDAQGDMLDNI 165 (225)
Q Consensus 139 ~~i~el~~lf~dl~~lV~~Qge~id~I 165 (225)
..-.+..+...+|+.++.+|..+.|.=
T Consensus 581 ~~~~~~~q~m~~L~dl~r~Qq~L~D~t 607 (820)
T PF13779_consen 581 QQQQEMQQAMEELGDLLRRQQQLMDET 607 (820)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667778888888999999998864
No 185
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=23.57 E-value=74 Score=29.18 Aligned_cols=20 Identities=20% Similarity=0.375 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 027280 196 WMCIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i 215 (225)
+++.+++++++++++|.+|+
T Consensus 63 K~~~G~~~~~~li~iiw~PL 82 (422)
T PF12166_consen 63 KYLMGGLLLLLLIIIIWFPL 82 (422)
T ss_pred EeeehHHHHHHHHHHHHHHH
Confidence 34555665555555555554
No 186
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=23.54 E-value=82 Score=27.24 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=2.6
Q ss_pred hHHHHHH
Q 027280 196 WMCIAII 202 (225)
Q Consensus 196 ~~~~~~~ 202 (225)
+++++++
T Consensus 198 ~i~f~ll 204 (256)
T PF09788_consen 198 AIIFFLL 204 (256)
T ss_pred HHHHHHH
Confidence 3333333
No 187
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=23.53 E-value=2e+02 Score=18.06 Aligned_cols=53 Identities=19% Similarity=0.304 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 135 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 187 (225)
Q Consensus 135 ~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~ 187 (225)
.+-...+..|.....++..+...=|..|+.=...++....++..+...+..|.
T Consensus 8 ~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~ 60 (66)
T smart00397 8 EERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKAN 60 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444445555555555444444
No 188
>PRK11677 hypothetical protein; Provisional
Probab=23.35 E-value=3.6e+02 Score=20.94 Aligned_cols=51 Identities=16% Similarity=0.293 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 135 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 135 ~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
.+|++.-.+|.+-=.++...+.+=.++++++-.+......++.+|...|--
T Consensus 36 ~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~~s~~Llp 86 (134)
T PRK11677 36 YELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAKSSSELLP 86 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 355566666666667777778888888899999999999999999888854
No 189
>PF13721 SecD-TM1: SecD export protein N-terminal TM region
Probab=23.26 E-value=1.2e+02 Score=22.23 Aligned_cols=23 Identities=17% Similarity=0.508 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Q 027280 195 KWMCIAIIILLIIVAIIVVAVIK 217 (225)
Q Consensus 195 k~~~~~~~i~~ii~~ii~~~i~~ 217 (225)
.|..+++++++++.++..+|=+.
T Consensus 6 ~WKyllil~vl~~~~lyALPnly 28 (101)
T PF13721_consen 6 LWKYLLILVVLLLGALYALPNLY 28 (101)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcc
Confidence 56666666666666555565443
No 190
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=23.22 E-value=1.3e+02 Score=18.78 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHhccc
Q 027280 201 IIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 201 ~~i~~ii~~ii~~~i~~~~ 219 (225)
+++++++.+.+++..++|.
T Consensus 15 ~v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 15 TVLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 3333444444444445443
No 191
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=23.09 E-value=3e+02 Score=25.01 Aligned_cols=54 Identities=11% Similarity=0.175 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 4 DVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLREN 69 (225)
Q Consensus 4 ~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~ 69 (225)
..+.|.......+..|+.+..+..... .-..-|+. .|.++|...+.+|+..+..
T Consensus 228 ~~~~I~~~~~~~~~~L~kl~~~i~~~l---------ekI~sREk---~iN~qle~l~~eYr~~~~~ 281 (359)
T PF10498_consen 228 HKKSIESALPETKSQLDKLQQDISKTL---------EKIESREK---YINNQLEPLIQEYRSAQDE 281 (359)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHH---------HHHHHHHH---HHHHHhHHHHHHHHHHHHH
Confidence 344555566666666666666543321 00122222 3344666666666665543
No 192
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=22.95 E-value=72 Score=28.28 Aligned_cols=34 Identities=12% Similarity=0.188 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027280 43 RSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVER 80 (225)
Q Consensus 43 rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r 80 (225)
++.++.-..-..+| .+|..-=...+.+||+++.+
T Consensus 39 ~Vme~F~rqTsQRF----~EYdErm~~kRqkcKEqcDK 72 (299)
T PF02009_consen 39 SVMENFDRQTSQRF----EEYDERMQEKRQKCKEQCDK 72 (299)
T ss_pred HHHHHHHHHHHHHH----HHHHhhhhhhHHHHHHHhcc
Confidence 44444444444444 44443222345567777643
No 193
>PHA02642 C-type lectin-like protein; Provisional
Probab=22.67 E-value=45 Score=28.13 Aligned_cols=10 Identities=40% Similarity=0.594 Sum_probs=4.5
Q ss_pred hhHHHHHHHH
Q 027280 195 KWMCIAIIIL 204 (225)
Q Consensus 195 k~~~~~~~i~ 204 (225)
|.+|+.++|+
T Consensus 49 ~~~~c~~~i~ 58 (216)
T PHA02642 49 KLYCCIITIC 58 (216)
T ss_pred ceeeeeehHH
Confidence 5554444433
No 194
>PHA02911 C-type lectin-like protein; Provisional
Probab=22.63 E-value=1e+02 Score=25.81 Aligned_cols=7 Identities=29% Similarity=0.235 Sum_probs=3.6
Q ss_pred HHHcccc
Q 027280 187 KKLQKNS 193 (225)
Q Consensus 187 ~~~qk~~ 193 (225)
.-|||..
T Consensus 22 ~~~~~~~ 28 (213)
T PHA02911 22 SIYQKEK 28 (213)
T ss_pred hhhhhhh
Confidence 3466553
No 195
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=22.21 E-value=3.5e+02 Score=21.61 Aligned_cols=61 Identities=11% Similarity=0.091 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHH
Q 027280 140 KLLELQQIFLDMAVL-VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKW-MCIAIIILLI 206 (225)
Q Consensus 140 ~i~el~~lf~dl~~l-V~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~-~~~~~~i~~i 206 (225)
+...|.++...|+.. ++.|...++-...++ ....+.|..+. .++.|-.+.. .|.+++++++
T Consensus 107 d~eiL~~lg~~LG~~D~e~Q~k~i~L~~e~L---~~~~~~a~~~~---~k~~Kmy~~LGvl~Gl~lvIl 169 (171)
T PRK08307 107 DIEILLQFGKTLGQSDREGQQKHIRLALEHL---EREEEEAEEEQ---KKNEKMYKYLGFLAGLLIVIL 169 (171)
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHHHHHHHHH---HHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHH
Confidence 344555555555554 444444444333333 33334444333 3455556655 3444444443
No 196
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=22.15 E-value=2.9e+02 Score=19.40 Aligned_cols=13 Identities=38% Similarity=0.422 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 027280 161 MLDNIESQVSSAV 173 (225)
Q Consensus 161 ~id~Ie~nv~~a~ 173 (225)
-+|.||..|+.+.
T Consensus 23 rLD~iEeKVEftn 35 (77)
T PRK01026 23 RLDEIEEKVEFTN 35 (77)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666555543
No 197
>PF04415 DUF515: Protein of unknown function (DUF515) ; InterPro: IPR007509 This is a family of hypothetical archaeal proteins.
Probab=22.00 E-value=56 Score=30.28 Aligned_cols=23 Identities=35% Similarity=0.590 Sum_probs=12.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 027280 193 SRKWMCIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 193 ~rk~~~~~~~i~~ii~~ii~~~i 215 (225)
.|+.+.++.++++||++++++.+
T Consensus 28 ~~~riiiGa~Vl~iIii~~~~~~ 50 (416)
T PF04415_consen 28 RRKRIIIGAAVLIIIIIFIVYNI 50 (416)
T ss_pred hhhhhhhhhhhHhHHHHHHHHHH
Confidence 34445555555555555555544
No 198
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=21.95 E-value=94 Score=26.17 Aligned_cols=12 Identities=25% Similarity=0.528 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 027280 199 IAIIILLIIVAI 210 (225)
Q Consensus 199 ~~~~i~~ii~~i 210 (225)
+++++++|.+|+
T Consensus 130 mLIClIIIAVLf 141 (227)
T PF05399_consen 130 MLICLIIIAVLF 141 (227)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 199
>PHA02513 V1 structural protein V1; Reviewed
Probab=21.62 E-value=2e+02 Score=21.77 Aligned_cols=16 Identities=19% Similarity=0.602 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027280 198 CIAIIILLIIVAIIVVA 214 (225)
Q Consensus 198 ~~~~~i~~ii~~ii~~~ 214 (225)
++++.+.+++. +++++
T Consensus 70 ii~L~IFIliG-ivl~~ 85 (135)
T PHA02513 70 LLGLFIFILIG-IVLLP 85 (135)
T ss_pred HHHHHHHHHHH-HHHhh
Confidence 33333333333 34433
No 200
>COG4499 Predicted membrane protein [Function unknown]
Probab=21.33 E-value=1.8e+02 Score=26.94 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=12.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 027280 193 SRKWMCIAIIILLIIVAIIVVA 214 (225)
Q Consensus 193 ~rk~~~~~~~i~~ii~~ii~~~ 214 (225)
..||.-+++++++|.+++.+..
T Consensus 219 ifk~~giGliillvl~li~~~Y 240 (434)
T COG4499 219 IFKYFGIGLIILLVLLLIYFTY 240 (434)
T ss_pred ehhhHHHhHHHHHHHHHHHHHH
Confidence 3467767666666655555433
No 201
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=21.29 E-value=1.1e+02 Score=23.06 Aligned_cols=19 Identities=32% Similarity=0.621 Sum_probs=9.8
Q ss_pred chhHHHHHHHHHHHHHHHH
Q 027280 194 RKWMCIAIIILLIIVAIIV 212 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~ii~ 212 (225)
+...+++++++++|-++++
T Consensus 60 ~~lffvglii~LivSLaLV 78 (128)
T PF15145_consen 60 RSLFFVGLIIVLIVSLALV 78 (128)
T ss_pred eeehHHHHHHHHHHHHHHH
Confidence 3445555555555555444
No 202
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=21.27 E-value=96 Score=20.64 Aligned_cols=26 Identities=23% Similarity=0.497 Sum_probs=12.0
Q ss_pred chhHHHHHHHHHHHHHH-HHHHHhccc
Q 027280 194 RKWMCIAIIILLIIVAI-IVVAVIKPW 219 (225)
Q Consensus 194 rk~~~~~~~i~~ii~~i-i~~~i~~~~ 219 (225)
.+..-|+++|-.+|++. ++...+..|
T Consensus 7 ~~mtriVLLISfiIlfgRl~Y~~I~a~ 33 (59)
T PF11119_consen 7 SRMTRIVLLISFIILFGRLIYSAIGAW 33 (59)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444445555555544 444334444
No 203
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.03 E-value=1.4e+02 Score=19.97 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhccc
Q 027280 200 AIIILLIIVAIIVVAVIKPW 219 (225)
Q Consensus 200 ~~~i~~ii~~ii~~~i~~~~ 219 (225)
+++.+.++.+.++..++.|.
T Consensus 14 ~t~~~~l~fiavi~~ayr~~ 33 (60)
T COG4736 14 GTIAFTLFFIAVIYFAYRPG 33 (60)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 34444444444555555554
No 204
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.82 E-value=5.2e+02 Score=21.83 Aligned_cols=40 Identities=23% Similarity=0.370 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVS 170 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~ 170 (225)
.+.+.++.....++..+...=-..|-.-|+.++..+.-..
T Consensus 133 ~~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s 172 (216)
T KOG0862|consen 133 QRNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMAS 172 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhh
Confidence 3456667777777777777766677777888777664433
No 205
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=20.80 E-value=2.6e+02 Score=18.38 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027280 167 SQVSSAVDHVQSGNTALQ 184 (225)
Q Consensus 167 ~nv~~a~~~v~~~~~~L~ 184 (225)
..+..|.+....|+..|.
T Consensus 31 ~~v~~ak~EAaRAN~RlD 48 (56)
T PF04728_consen 31 ADVQAAKEEAARANQRLD 48 (56)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555554
No 206
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=20.68 E-value=3e+02 Score=24.54 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 027280 51 GLKKKFKDKMGEFQVLR 67 (225)
Q Consensus 51 ~L~~~f~~~~~~f~~~q 67 (225)
.|.+.+..+|++|+.++
T Consensus 270 ~lNnqL~~l~q~fr~a~ 286 (384)
T KOG0972|consen 270 SLNNQLASLMQKFRRAT 286 (384)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566777777777654
No 207
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=20.59 E-value=47 Score=20.94 Aligned_cols=18 Identities=17% Similarity=0.541 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 027280 199 IAIIILLIIVAIIVVAVI 216 (225)
Q Consensus 199 ~~~~i~~ii~~ii~~~i~ 216 (225)
++++++..+++++++.|-
T Consensus 5 V~~iilg~~ll~~LigiC 22 (49)
T PF05624_consen 5 VVLIILGALLLLLLIGIC 22 (49)
T ss_pred EeHHHHHHHHHHHHHHHH
Confidence 334444444444555553
No 208
>PRK13673 hypothetical protein; Provisional
Probab=20.54 E-value=1.4e+02 Score=22.65 Aligned_cols=21 Identities=14% Similarity=-0.083 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 027280 128 QERHDAVRDLERKLLELQQIF 148 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf 148 (225)
-.|---+.-|-+.+.-+...|
T Consensus 36 ilRLfyil~iiTG~~l~~~~~ 56 (118)
T PRK13673 36 ILRLFYILIIITGFWLLIRSF 56 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666655555554
No 209
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=20.51 E-value=3.5e+02 Score=19.73 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=12.0
Q ss_pred cCCCCCChHHHHHhhhc
Q 027280 85 VTGKRADEETIDQLIET 101 (225)
Q Consensus 85 i~~~~~t~eeie~~~e~ 101 (225)
+.+++.|..+++.-+..
T Consensus 11 ~~n~~lt~~e~~~~l~~ 27 (113)
T PF02520_consen 11 FQNPNLTKAEIEEQLDE 27 (113)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 44677888888776654
No 210
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=20.18 E-value=1e+02 Score=31.85 Aligned_cols=24 Identities=13% Similarity=0.639 Sum_probs=10.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 027280 192 NSRKWMCIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 192 ~~rk~~~~~~~i~~ii~~ii~~~i 215 (225)
...+|.++.+++++|++|.+++++
T Consensus 1068 ~~yr~~il~~l~ililll~l~~fl 1091 (1105)
T KOG1326|consen 1068 HRYRWYILLLLLILILLLLLALFL 1091 (1105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333454444444444444444433
No 211
>PF11837 DUF3357: Domain of unknown function (DUF3357); InterPro: IPR021792 This entry represents the N-terminal domain of beta-fructofuranosidase, whcih is involved in the hydrolysis of terminal non-reducing beta-D-fructofuranoside residues in beta-D-fructofuranosides. ; GO: 0004564 beta-fructofuranosidase activity, 0004575 sucrose alpha-glucosidase activity; PDB: 3UGG_A 3UGH_B 3UGF_B.
Probab=20.05 E-value=35 Score=25.31 Aligned_cols=9 Identities=33% Similarity=0.619 Sum_probs=0.0
Q ss_pred hHHHHHHHH
Q 027280 196 WMCIAIIIL 204 (225)
Q Consensus 196 ~~~~~~~i~ 204 (225)
++|+.+++.
T Consensus 28 ~k~~~~i~~ 36 (106)
T PF11837_consen 28 LKCLAAIFS 36 (106)
T ss_dssp ---------
T ss_pred chhHHHHHH
Confidence 344444443
No 212
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=20.05 E-value=4.5e+02 Score=24.17 Aligned_cols=11 Identities=45% Similarity=0.824 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q 027280 138 ERKLLELQQIF 148 (225)
Q Consensus 138 e~~i~el~~lf 148 (225)
+..+..|.++|
T Consensus 124 ~~~l~~Le~~~ 134 (406)
T PF04906_consen 124 EQHLTRLEEIF 134 (406)
T ss_pred HHHHHHHHHHh
Confidence 34444444444
No 213
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=20.04 E-value=4.2e+02 Score=21.16 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchh-HHHHHHHHHH
Q 027280 140 KLLELQQIFLDMAVL-VDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKW-MCIAIIILLI 206 (225)
Q Consensus 140 ~i~el~~lf~dl~~l-V~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~-~~~~~~i~~i 206 (225)
+...|.++...|+.. ++.|...++-.. ++-....+.|..+.. ++.|-.+.. .|.+++++++
T Consensus 106 d~eiL~~lG~~LG~~D~e~Q~k~i~L~~---~~L~~~~~~a~~~~~---k~~Kmy~~LGvl~Gl~lvIl 168 (170)
T TIGR02833 106 EKEILLQFGKTLGESDREGQQKHINLTL---EHLERQLTEAEDEQK---KNEKMYRYLGVLVGLMIVLL 168 (170)
T ss_pred HHHHHHHHHHHHCcCcHHHHHHHHHHHH---HHHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHH
Confidence 344455555555544 344444444333 333333444444333 455555655 3444444443
No 214
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=20.03 E-value=1.3e+02 Score=25.68 Aligned_cols=7 Identities=29% Similarity=0.994 Sum_probs=3.3
Q ss_pred cccCCCC
Q 027280 218 PWSSNKG 224 (225)
Q Consensus 218 ~~~~~~~ 224 (225)
-|+..||
T Consensus 214 C~k~dPg 220 (259)
T PF07010_consen 214 CWKTDPG 220 (259)
T ss_pred hhcCCCC
Confidence 4554444
Done!