Query 027280
Match_columns 225
No_of_seqs 160 out of 1304
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:18:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/027280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_B Syntaxin 1A, syntaxin b 100.0 4.1E-38 1.4E-42 271.0 7.3 192 2-199 76-267 (267)
2 2xhe_B Syntaxin1; exocytosis, 100.0 2E-32 6.8E-37 236.8 5.0 187 2-194 91-279 (279)
3 3hd7_B Syntaxin-1A; membrane p 100.0 8.5E-29 2.9E-33 185.6 14.2 98 118-215 7-104 (109)
4 1jth_B Syntaxin 1A; coiled-coi 99.9 7.9E-25 2.7E-29 154.3 10.5 77 123-199 1-77 (77)
5 1fio_A SSO1 protein; four heli 99.9 2.1E-24 7.2E-29 177.0 10.8 144 2-159 52-196 (196)
6 2nps_B Syntaxin 13, vesicle-as 99.9 7.7E-23 2.6E-27 141.9 9.8 70 128-197 2-71 (71)
7 1sfc_B Protein (syntaxin 1A), 99.9 1.9E-22 6.6E-27 143.9 10.6 77 118-194 7-83 (83)
8 3b5n_B Protein SSO1; snare com 99.9 1.6E-21 5.4E-26 134.5 10.9 69 123-191 1-69 (69)
9 1n7s_B Syntaxin 1A; neuronal s 99.8 2.6E-20 8.9E-25 128.0 9.0 66 122-187 2-67 (68)
10 1gl2_B Syntaxin 7; membrane pr 99.8 1.2E-19 4.1E-24 123.6 8.4 63 126-188 3-65 (65)
11 3c98_B Syntaxin-1A; protein co 99.8 5.9E-20 2E-24 156.3 7.6 192 2-199 88-279 (279)
12 1s94_A S-syntaxin; three helix 99.5 2.3E-15 7.8E-20 121.9 3.2 98 1-102 83-180 (180)
13 1ez3_A Syntaxin-1A; three heli 99.1 1.4E-10 4.6E-15 88.3 8.1 74 1-77 52-125 (127)
14 3hd7_A Vesicle-associated memb 97.6 0.0018 6.2E-08 46.1 12.4 44 132-175 5-48 (91)
15 2nps_D Syntaxin-6; vesicle fus 97.5 0.0004 1.4E-08 48.5 7.9 65 127-191 14-78 (82)
16 1n7s_D SNAP-25A; neuronal snar 97.5 0.0013 4.6E-08 43.8 9.8 57 129-185 7-63 (66)
17 1gl2_D Syntaxin 8, vesicle tra 97.4 0.00065 2.2E-08 45.2 7.6 59 127-185 4-62 (65)
18 1sfc_D Protein (SNAP-25B), pro 97.3 0.0024 8.3E-08 45.0 9.8 58 128-185 25-82 (87)
19 3hd7_B Syntaxin-1A; membrane p 97.2 0.02 6.9E-07 41.9 14.5 87 122-212 18-105 (109)
20 1l4a_D S-SNAP25 fusion protein 97.0 0.0028 9.7E-08 44.7 7.7 56 130-185 28-83 (87)
21 3b5n_D Protein transport prote 97.0 0.0094 3.2E-07 39.5 9.3 56 130-185 8-63 (64)
22 2kog_A Vesicle-associated memb 96.7 0.00029 9.9E-09 52.8 0.2 80 132-213 33-115 (119)
23 2dnx_A Syntaxin-12; snare, HAB 96.0 0.07 2.4E-06 40.2 10.2 40 40-79 84-123 (130)
24 1nhl_A Synaptosomal-associated 95.5 0.14 4.7E-06 32.6 8.4 43 142-184 10-52 (54)
25 3b5n_C Protein transport prote 94.4 0.66 2.2E-05 31.1 9.8 37 153-189 33-69 (70)
26 1n7s_C SNAP-25A; neuronal snar 94.3 0.79 2.7E-05 31.3 10.9 51 135-185 26-76 (79)
27 1hs7_A Syntaxin VAM3; UP-and-D 93.7 0.98 3.4E-05 32.2 10.2 70 3-76 3-93 (97)
28 1l4a_C S-SNAP25 fusion protein 91.1 1.2 4E-05 30.9 7.5 35 149-183 44-78 (83)
29 3hd7_A Vesicle-associated memb 81.8 11 0.00037 26.2 12.6 23 122-144 23-45 (91)
30 1gl2_C VTI1B, vesicle transpor 80.5 9.5 0.00032 24.7 8.9 48 137-184 14-61 (65)
31 1sfc_A VAMP 2, protein (synapt 77.1 16 0.00056 25.6 8.8 43 132-174 30-72 (96)
32 2kog_A Vesicle-associated memb 76.8 2.1 7E-05 31.6 3.4 23 198-220 96-118 (119)
33 2nps_B Syntaxin 13, vesicle-as 76.3 14 0.00047 24.2 8.9 62 125-186 6-67 (71)
34 1jth_B Syntaxin 1A; coiled-coi 73.4 17 0.00059 24.1 9.7 66 123-188 8-73 (77)
35 1wlq_A Geminin; coiled-coil; 2 65.8 29 0.001 23.7 8.3 61 104-165 18-78 (83)
36 1n7s_B Syntaxin 1A; neuronal s 64.3 26 0.00089 22.6 9.3 57 124-180 11-67 (68)
37 2nps_A VAMP-4, vesicle-associa 63.3 25 0.00085 23.2 6.2 40 133-172 9-48 (74)
38 2wvr_A Geminin; DNA replicatio 63.3 45 0.0015 26.6 8.5 72 104-176 95-166 (209)
39 3n27_A Fusion glycoprotein F0, 59.5 38 0.0013 22.9 6.6 61 126-188 14-74 (80)
40 3efg_A Protein SLYX homolog; x 58.0 39 0.0013 22.7 6.4 46 133-178 15-60 (78)
41 1l4a_A Synaptobrevin; snare, s 57.0 33 0.0011 23.0 6.0 39 133-171 16-54 (80)
42 1sfc_B Protein (syntaxin 1A), 56.6 42 0.0014 22.5 9.0 61 123-183 19-79 (83)
43 2ww9_B Protein transport prote 55.6 6.2 0.00021 27.0 2.0 32 161-192 14-45 (80)
44 3ghg_A Fibrinogen alpha chain; 55.4 80 0.0027 29.0 9.8 15 127-141 140-154 (562)
45 1gl2_B Syntaxin 7; membrane pr 54.7 39 0.0013 21.6 8.7 56 125-180 9-64 (65)
46 3ajm_A Programmed cell death p 52.6 57 0.002 26.2 7.6 20 6-25 122-141 (213)
47 2c5k_T Syntaxin TLG1, T-snare 52.5 56 0.0019 22.7 6.8 56 4-64 37-92 (95)
48 3swy_A Cyclic nucleotide-gated 52.3 35 0.0012 20.7 4.8 24 46-69 11-34 (46)
49 1uii_A Geminin; human, DNA rep 51.5 55 0.0019 22.3 8.8 53 104-157 26-78 (83)
50 1n7s_A Vesicle-associated memb 49.5 47 0.0016 21.0 9.9 42 132-173 4-45 (63)
51 3b5n_B Protein SSO1; snare com 48.4 52 0.0018 21.2 10.5 58 124-181 9-66 (69)
52 3b5n_A Synaptobrevin homolog 1 45.2 55 0.0019 20.6 9.8 39 133-171 3-41 (61)
53 1gl2_A Endobrevin; membrane pr 42.8 64 0.0022 20.6 8.3 40 132-171 9-48 (65)
54 2l8s_A Integrin alpha-1; trans 42.6 19 0.00064 22.6 2.6 22 196-217 10-31 (54)
55 2knc_A Integrin alpha-IIB; tra 42.6 19 0.00064 22.6 2.6 22 195-216 11-33 (54)
56 2nps_C Vesicle transport throu 42.0 76 0.0026 21.2 11.3 57 132-188 19-75 (81)
57 3swf_A CGMP-gated cation chann 41.9 56 0.0019 21.8 5.0 29 46-78 13-41 (74)
58 1urq_A M-tomosyn isoform; tran 40.9 69 0.0024 20.5 8.7 38 134-171 6-43 (63)
59 2k1a_A Integrin alpha-IIB; sin 39.3 35 0.0012 20.2 3.3 22 196-217 11-32 (42)
60 3p8c_F ABL interactor 2; actin 34.9 1.5E+02 0.0052 22.6 8.4 46 131-176 53-98 (159)
61 4dnd_A Syntaxin-10, SYN10; str 34.7 76 0.0026 23.4 5.4 55 5-59 69-124 (130)
62 1qu7_A Methyl-accepting chemot 31.7 1.9E+02 0.0066 22.9 9.0 53 128-180 143-195 (227)
63 1rh5_B Preprotein translocase 31.1 15 0.00052 24.6 0.9 24 165-188 5-28 (74)
64 3zx6_A HAMP, methyl-accepting 28.4 2.6E+02 0.009 23.4 10.9 52 129-180 224-275 (341)
65 1deq_A Fibrinogen (alpha chain 28.2 3E+02 0.01 24.0 10.6 15 127-141 143-157 (390)
66 3gwk_C SAG1039, putative uncha 27.0 1.4E+02 0.0048 19.8 8.9 73 3-76 15-87 (98)
67 2wwb_B SEC61gamma, protein tra 24.6 9.2 0.00031 25.3 -1.1 31 168-198 7-37 (68)
68 3zbh_A ESXA; unknown function, 23.7 1.6E+02 0.0055 19.3 7.8 28 2-29 15-42 (99)
69 4ioe_A Secreted protein ESXB; 23.4 1.6E+02 0.0054 19.2 8.3 28 2-29 15-42 (93)
70 2zxx_A Geminin; coiled-coil, c 22.1 1.9E+02 0.0064 19.5 7.6 24 121-144 30-53 (79)
71 3fav_B ESAT-6, 6 kDa early sec 21.6 1.8E+02 0.006 19.0 8.3 64 1-65 10-73 (94)
72 2zxe_G FXYD10, phospholemman-l 21.3 95 0.0032 20.6 3.3 16 200-215 22-37 (74)
No 1
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=100.00 E-value=4.1e-38 Score=270.97 Aligned_cols=192 Identities=26% Similarity=0.458 Sum_probs=150.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR 81 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~ 81 (225)
+..+.+|+.+++.|+.+|+.|+..+... +++.+++++.|+|++|+.+|+++|+++|.+|+.+|..|.+.+|.++.|+
T Consensus 76 ~~l~~~i~~~~~~i~~~Lk~l~~~~~~~---~~~~~~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq 152 (267)
T 1dn1_B 76 EELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ 152 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5678899999999999999999875432 1223456778999999999999999999999999999999999999775
Q ss_pred hhhcCCCCCChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 027280 82 VYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM 161 (225)
Q Consensus 82 ~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~ 161 (225)
+.+.||++++++++.++++|++..|.+..+. ..++++.++.++++||++|.+||++|.+|++||.||+.||++||++
T Consensus 153 -~~i~~~~~tdeeie~~ie~g~~~~f~q~~l~--~~~~~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~ 229 (267)
T 1dn1_B 153 -LEITGRTTTSEELEDMLESGNPAIFASGIIM--DSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEM 229 (267)
T ss_dssp -HHHTTCCCCHHHHHHHHHTCSSCTTTTTCCC--CSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSG
T ss_pred -hhccCCCCCHHHHHHHHhCCcHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4678999999999999998877544332222 2345677899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 027280 162 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 199 (225)
Q Consensus 162 id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~ 199 (225)
||+||+||+.|..||+.|..+|.+|.+||+++|||+||
T Consensus 230 id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~~ 267 (267)
T 1dn1_B 230 IDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 267 (267)
T ss_dssp GGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence 99999999999999999999999999999999999986
No 2
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.97 E-value=2e-32 Score=236.84 Aligned_cols=187 Identities=26% Similarity=0.444 Sum_probs=131.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKG-TG-VDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVE 79 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~-s~-e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~ 79 (225)
+.-+.+|+.+++.|+..|+.|...+......++++.+ ++ +.|++++++..|+++|++++.+|+.+|..|...+|.++.
T Consensus 91 e~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~ 170 (279)
T 2xhe_B 91 QDTMARISALGNKIRADLKQIEKENKRAQQEGTFEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVA 170 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCCSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788889999999999998875443222223333 33 679999999999999999999999999999999988876
Q ss_pred hhhhhcCCCCCChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027280 80 RRVYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQG 159 (225)
Q Consensus 80 r~~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qg 159 (225)
| ++.+.+|.+++++++.+++.|++..|.+ .. ..+....+.++++|+++|.+||++|.+|++||.||+.||++||
T Consensus 171 R-~~~i~~~~~~~ee~~~~~e~g~~~~f~q--~~---~~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg 244 (279)
T 2xhe_B 171 R-QCRVVEPSLSDDAIQKVIEHGTEGIFSG--MR---LEGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQG 244 (279)
T ss_dssp T-SCCSSCCCCSSTTHHHHHHHC----------------------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSC
T ss_pred H-HHHHhCCCCCHHHHHHHHhCCchHHHHH--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 5567789999999999998887654443 11 1223456778999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 027280 160 DMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 194 (225)
Q Consensus 160 e~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r 194 (225)
++||+||+||+.|..||+.|..+|.+|.+||+++|
T Consensus 245 ~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~~R 279 (279)
T 2xhe_B 245 EMIDRIEFSVEQSHNYVKKATEQVVQARHYQESAR 279 (279)
T ss_dssp SSTTCHHHHHHTCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 99999999999999999999999999999999875
No 3
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.96 E-value=8.5e-29 Score=185.63 Aligned_cols=98 Identities=37% Similarity=0.547 Sum_probs=87.8
Q ss_pred hchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhH
Q 027280 118 GQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 197 (225)
Q Consensus 118 ~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~ 197 (225)
++++.+++++++|+++|.+||++|.||++||.||+.||++||++||+||+|+++|.+||++|+.+|.+|.+|||++|||+
T Consensus 7 ~~a~~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~ 86 (109)
T 3hd7_B 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKK 86 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 027280 198 CIAIIILLIIVAIIVVAV 215 (225)
Q Consensus 198 ~~~~~i~~ii~~ii~~~i 215 (225)
||++++++|+++++.+++
T Consensus 87 ~i~l~~~~i~~~i~~~~~ 104 (109)
T 3hd7_B 87 IMIIICCVILGIIIASTI 104 (109)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHh
Confidence 888877766665554443
No 4
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.92 E-value=7.9e-25 Score=154.27 Aligned_cols=77 Identities=40% Similarity=0.626 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 199 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~ 199 (225)
+|+++++|+++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|++++|||+||
T Consensus 1 ~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~i 77 (77)
T 1jth_B 1 ALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccC
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999886
No 5
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=99.91 E-value=2.1e-24 Score=177.04 Aligned_cols=144 Identities=26% Similarity=0.441 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR 81 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~ 81 (225)
++-+.+|+.+++.|+.+|+.|+..+. +.|++++++.+|+++|+++|.+|+.+|..|.++||+++.|+
T Consensus 52 ~~l~~~i~~~~~~~~~~lk~l~~~~~-------------~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq 118 (196)
T 1fio_A 52 DNFVAQATDLQFKLKNEIKSAQRDGI-------------HDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQ 118 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-------------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcch-------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999977521 24899999999999999999999999999999999999887
Q ss_pred hhhcCCCCCChHHHHHhhhcCChhHHHHHHHHH-hchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027280 82 VYTVTGKRADEETIDQLIETGDSEQIFQKAIQE-QGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQG 159 (225)
Q Consensus 82 ~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~-~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qg 159 (225)
|. +.+|++++++++.++++++...+|++++.. ++.++++.++.++++||++|.+||++|.|||+||.|||.||++||
T Consensus 119 ~~-i~~~~~~~~e~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 119 YM-IIQPEATEDEVEAAISDVGGQQIFSQALLNANRRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp HH-HHCTTCCHHHHHHHTSHHHHHHHHHHHTC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred Hh-hcCCCCCHHHHHHHHHcCCchhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 457889999999988765555677766643 345667789999999999999999999999999999999999998
No 6
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.89 E-value=7.7e-23 Score=141.85 Aligned_cols=70 Identities=41% Similarity=0.646 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhH
Q 027280 128 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWM 197 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~ 197 (225)
++|+++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||+.|..+|.+|.+|++++|||+
T Consensus 2 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~~ 71 (71)
T 2nps_B 2 SMRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKKM 71 (71)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999884
No 7
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.88 E-value=1.9e-22 Score=143.92 Aligned_cols=77 Identities=40% Similarity=0.613 Sum_probs=70.6
Q ss_pred hchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Q 027280 118 GQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSR 194 (225)
Q Consensus 118 ~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~r 194 (225)
++++.++.++++|+++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|++++|
T Consensus 7 ~~~~~~l~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~r 83 (83)
T 1sfc_B 7 SISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (83)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999875
No 8
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.86 E-value=1.6e-21 Score=134.45 Aligned_cols=69 Identities=38% Similarity=0.475 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 191 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk 191 (225)
+|.++++|+++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+|||
T Consensus 1 al~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 1 ALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999999999999999999999999999999999999999999999999986
No 9
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.83 E-value=2.6e-20 Score=128.00 Aligned_cols=66 Identities=42% Similarity=0.673 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 122 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAK 187 (225)
Q Consensus 122 ~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~ 187 (225)
.++.++++|+++|.+||++|.+|++||.||+.||++||++||+||+||+.|..||++|..+|.+|.
T Consensus 2 ~~l~~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 2 SALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368899999999999999999999999999999999999999999999999999999999999985
No 10
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.80 E-value=1.2e-19 Score=123.56 Aligned_cols=63 Identities=37% Similarity=0.698 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 126 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 126 ~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
.+++|+++|.+|+++|.+|++||.||+.||++||++||+||+||+.|..||++|..+|.+|.+
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~k 65 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAAN 65 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999999999999999999999999999999999864
No 11
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=99.80 E-value=5.9e-20 Score=156.29 Aligned_cols=192 Identities=26% Similarity=0.446 Sum_probs=133.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVERR 81 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r~ 81 (225)
+..+.++..++..++..+..+......... ......+.+.+.+|++.|...|...+..|...+..|...+++.+.+.
T Consensus 88 ~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~---i~~~~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~l 164 (279)
T 3c98_B 88 EELMSDIKKTANKVRSKLKSIEQSIEQEEG---LNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQ 164 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888877765443322 23456788999999999999999999999999999988888888554
Q ss_pred hhhcCCCCCChHHHHHhhhcCChhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 027280 82 VYTVTGKRADEETIDQLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDM 161 (225)
Q Consensus 82 ~~~i~~~~~t~eeie~~~e~~~~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~ 161 (225)
....++.+++.+.......+.+..+..... .........+..+.+++..+..|+.+|.+|+++|.+|+.+|.+||++
T Consensus 165 -a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~ 241 (279)
T 3c98_B 165 -LEITGRTTTSEELEDMLESGNPAIFASGII--MDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEM 241 (279)
T ss_dssp -HHHHTCCCCHHHHHHHHHSCCTTSSTTTSC--SCSSSTTHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSG
T ss_pred -HHhhccCccchHHHHHHHhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655544433333322211111 11233456788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHH
Q 027280 162 LDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCI 199 (225)
Q Consensus 162 id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~ 199 (225)
+|+|++||+.+.++|+.|..+|.+|.+|++++|||+||
T Consensus 242 ~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkkk~i 279 (279)
T 3c98_B 242 IDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIM 279 (279)
T ss_dssp GGCHHHHHHTCCCCCCCCC-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 99999999999999999999999999999999999875
No 12
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=99.53 E-value=2.3e-15 Score=121.88 Aligned_cols=98 Identities=14% Similarity=0.351 Sum_probs=63.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVER 80 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~r 80 (225)
|++-+.+|+.+++.|+.+|+.|++.+... +++++++++.|+|++|+.+|+++|+++|.+|+.+|..|+.+||+++.|
T Consensus 83 le~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~kf~~~m~~yq~~q~~y~~~~K~~i~R 159 (180)
T 1s94_A 83 LEELMTDIKRTANKVRGKLKTIELNIEQE---EHSNKSSADLRIRKTQYSTISRKFVEVMSDYNTTQIDYRDRCKARIKR 159 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT---C-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999986553 344566778999999999999999999999999999999999999975
Q ss_pred hhhhcCCCCCChHHHHHhhhcC
Q 027280 81 RVYTVTGKRADEETIDQLIETG 102 (225)
Q Consensus 81 ~~~~i~~~~~t~eeie~~~e~~ 102 (225)
|+.|.||++|+++|++++++|
T Consensus 160 -q~~I~~~~~teeeie~~ie~G 180 (180)
T 1s94_A 160 -QMEITGRTTTNEELEDMLESG 180 (180)
T ss_dssp ----------------------
T ss_pred -HHHHhCCCCCHHHHHHHHhCc
Confidence 567889999999999999765
No 13
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=99.13 E-value=1.4e-10 Score=88.27 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=62.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREV 77 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~ 77 (225)
|+..+++|+.+++.||.+|+.|++++... +++.+++++.|+|++|+.+|+++|+++|.+|+.+|..|++.|+.+
T Consensus 52 l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~---~~~~~~s~~~Rir~~q~~~L~~kf~e~m~~y~~~q~~yre~~k~r 125 (127)
T 1ez3_A 52 LEELMSDIKKTANKVRSKLKSIEQSIEQE---EGLNRSSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGR 125 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999999987653 344567888999999999999999999999999876655555543
No 14
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.62 E-value=0.0018 Score=46.09 Aligned_cols=44 Identities=9% Similarity=0.088 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDH 175 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~ 175 (225)
+.+.++...+.|+.++..+=-.-|-+.||-||.+++..++-...
T Consensus 5 d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~ 48 (91)
T 3hd7_A 5 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999998777764443
No 15
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=97.53 E-value=0.0004 Score=48.52 Aligned_cols=65 Identities=11% Similarity=0.154 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Q 027280 127 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQK 191 (225)
Q Consensus 127 i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk 191 (225)
+++..+.+..|..+|..|++|..+|+..|..|.++||.+++.++.+...+..+++.+.+..+..+
T Consensus 14 ~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~ 78 (82)
T 2nps_D 14 GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTS 78 (82)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45566789999999999999999999999999999999999999999999999999988666443
No 16
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=97.49 E-value=0.0013 Score=43.82 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 129 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 129 ~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
+-.+.+..|...+..|++|..+|+..|..|..+||.|+..++.+...+..+++.+.+
T Consensus 7 eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 7 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999999999999888764
No 17
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.43 E-value=0.00065 Score=45.24 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 127 IQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 127 i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
+++..+.+..|..++..|++|..+++..|..|..+||.+++.++.+...+..++..+.+
T Consensus 4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~ 62 (65)
T 1gl2_D 4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62 (65)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999998887754
No 18
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=97.31 E-value=0.0024 Score=45.01 Aligned_cols=58 Identities=21% Similarity=0.318 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 128 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
.+-.+.+..|...+..|+.|..+|+..|..|.++||.|+..++.+...+..+++.+.+
T Consensus 25 ~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ 82 (87)
T 1sfc_D 25 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 82 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999999999999888764
No 19
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=97.24 E-value=0.02 Score=41.92 Aligned_cols=87 Identities=17% Similarity=0.265 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchhHHHHH
Q 027280 122 DTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKLQKNSRKWMCIAI 201 (225)
Q Consensus 122 ~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~~~~ 201 (225)
+-..++.+=+..+.+|..-..++..|..+=+.++..=...++....||+.+...+.+|.+.=+++.+ ...|+++++
T Consensus 18 eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rk----k~~i~l~~~ 93 (109)
T 3hd7_B 18 TRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR----KKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC----cceehHHHH
Confidence 3455677777888999999999999999999999999999999999999999999999877544333 235554444
Q ss_pred HH-HHHHHHHHH
Q 027280 202 II-LLIIVAIIV 212 (225)
Q Consensus 202 ~i-~~ii~~ii~ 212 (225)
++ ++|+++++.
T Consensus 94 ~i~~~i~~~~~~ 105 (109)
T 3hd7_B 94 VILGIIIASTIG 105 (109)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 43 344444443
No 20
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=97.03 E-value=0.0028 Score=44.69 Aligned_cols=56 Identities=16% Similarity=0.316 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 130 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 130 R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
-.+.+..|...+..|+.|-.+|+..|..|.++||+|+..++.+...+..+++.+.+
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~k 83 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATK 83 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46688999999999999999999999999999999999999999999999888764
No 21
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0094 Score=39.53 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 130 RHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 130 R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
-...+.+|...+.-|+.|-..|+..|..|.++||+|+..++.+...+..+++.|.+
T Consensus 8 ~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 8 IDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34577889999999999999999999999999999999999999999999888753
No 22
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=96.68 E-value=0.00029 Score=52.78 Aligned_cols=80 Identities=19% Similarity=0.236 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSA---VDHVQSGNTALQKAKKLQKNSRKWMCIAIIILLIIV 208 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a---~~~v~~~~~~L~~A~~~qk~~rk~~~~~~~i~~ii~ 208 (225)
+.+.++...+.|+.++..+=-.-|-+.||-||.+++..++- ...-.+....|.+ ++..++.|+++++++++++++
T Consensus 33 d~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~r--kmwwkn~K~~iii~~iv~iii 110 (119)
T 2kog_A 33 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKR--KYWWKNLKMMIILGVICAIIL 110 (119)
T ss_dssp SHHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHH--HHSCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35677888888888888888888999999999987665542 2222233333332 344444454444444444444
Q ss_pred HHHHH
Q 027280 209 AIIVV 213 (225)
Q Consensus 209 ~ii~~ 213 (225)
++|++
T Consensus 111 ~iIi~ 115 (119)
T 2kog_A 111 IIIIV 115 (119)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 33333
No 23
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.04 E-value=0.07 Score=40.19 Aligned_cols=40 Identities=15% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 40 GVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYREVVE 79 (225)
Q Consensus 40 ~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~~ 79 (225)
++.|.++.+...|.++|+.++++|+.+|..+.++.|..+.
T Consensus 84 ~~~r~~k~q~~KL~~dF~~~L~~FQ~~Qr~~aekek~~~~ 123 (130)
T 2dnx_A 84 SEQRQQRLQKERLMNDFSAALNNFQAVQRRVSEKEKESIA 123 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4678999999999999999999999999888777776553
No 24
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=95.47 E-value=0.14 Score=32.55 Aligned_cols=43 Identities=19% Similarity=0.295 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 142 LELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 184 (225)
Q Consensus 142 ~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 184 (225)
.+..++-..-...++.|||.|++++.+++....++..|.+.|.
T Consensus 10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 3444445556667899999999999999999999999998874
No 25
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=94.38 E-value=0.66 Score=31.06 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=32.0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 153 VLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKKL 189 (225)
Q Consensus 153 ~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~~ 189 (225)
.++..|||.|+++|.|++.+..+...|...|..-..+
T Consensus 33 ~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~~ 69 (70)
T 3b5n_C 33 GMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKKL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3678999999999999999999999999988765544
No 26
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=94.34 E-value=0.79 Score=31.34 Aligned_cols=51 Identities=20% Similarity=0.335 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 135 RDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQK 185 (225)
Q Consensus 135 ~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~ 185 (225)
..-..-+.+-.++-......++.|||.|++++.++..+..++..|.+.|..
T Consensus 26 ~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~ 76 (79)
T 1n7s_C 26 RRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKD 76 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhh
Confidence 333444455555666677788999999999999999999999999988854
No 27
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=93.73 E-value=0.98 Score=32.19 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHH---------------------HHHHHHHHHHHHHH
Q 027280 3 KDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTA---------------------TTLGLKKKFKDKMG 61 (225)
Q Consensus 3 ~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~---------------------~~~~L~~~f~~~~~ 61 (225)
....++..+...+-..|+.+++..... |...++.+.|-.-. +-+.|.++|..+.+
T Consensus 3 ~~~~d~~~li~t~s~niq~l~k~~~ql----GTkrD~~~LR~~l~~~l~~~~~~L~k~~~~l~~l~qkeRL~~dF~~l~~ 78 (97)
T 1hs7_A 3 QKTKELSNLIETFAEQSRVLEKECTKI----GSKRDSKELRYKIETELIPNCTSVRDKIESNILIHQNGKLSADFKNLKT 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT----TSSSCCHHHHHHHHHTHHHHHHHHHHHHHHSTHHHHCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHh----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence 345677777777777777777664332 11222333332211 45788899999999
Q ss_pred HHHHHHHHHHHHHHH
Q 027280 62 EFQVLRENIHQEYRE 76 (225)
Q Consensus 62 ~f~~~q~~~~~~~k~ 76 (225)
.|+.+|..|.++-++
T Consensus 79 ~fQ~~qr~y~ek~~e 93 (97)
T 1hs7_A 79 KYQSLQQSYNQRKSL 93 (97)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999998777665544
No 28
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=91.07 E-value=1.2 Score=30.87 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=28.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 149 LDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTAL 183 (225)
Q Consensus 149 ~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L 183 (225)
..-..++..|||.|++||.+++....+...|.+.|
T Consensus 44 ~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L 78 (83)
T 1l4a_C 44 IRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNL 78 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445788999999999999999888887776554
No 29
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=81.82 E-value=11 Score=26.20 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 027280 122 DTLAEIQERHDAVRDLERKLLEL 144 (225)
Q Consensus 122 ~~l~~i~~R~~~i~~ie~~i~el 144 (225)
...+.+-+|.+.+..|.....+|
T Consensus 23 ~NI~kvL~RgekL~~L~~kt~~L 45 (91)
T 3hd7_A 23 VNVDKVLERDQKLSELDDRADAL 45 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHH
Confidence 34455555655555544444333
No 30
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=80.46 E-value=9.5 Score=24.73 Aligned_cols=48 Identities=19% Similarity=0.222 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 137 LERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQ 184 (225)
Q Consensus 137 ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~ 184 (225)
-..-+.|--++=.....-++.|+|.|.+...++..+..++..+.+-|.
T Consensus 14 s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~ 61 (65)
T 1gl2_C 14 SHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILR 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHH
Confidence 334445555556666677899999999999999999999999988775
No 31
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=77.10 E-value=16 Score=25.56 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVD 174 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~ 174 (225)
+.|.++...+.++..+..+--.-|-+.||-||.+++..+.-..
T Consensus 30 d~l~~vq~eldeVk~IM~~NI~kvLeRGEkLd~L~dkse~L~~ 72 (96)
T 1sfc_A 30 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4678888899999999999999999999999999877666433
No 32
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=76.79 E-value=2.1 Score=31.59 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHhcccc
Q 027280 198 CIAIIILLIIVAIIVVAVIKPWS 220 (225)
Q Consensus 198 ~~~~~i~~ii~~ii~~~i~~~~~ 220 (225)
+-..+++++++++++++|+...|
T Consensus 96 ~K~~iii~~iv~iii~iIi~~~c 118 (119)
T 2kog_A 96 LKMMIILGVICAIILIIIIVYFS 118 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhee
Confidence 33344444444444444554443
No 33
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=76.29 E-value=14 Score=24.25 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 125 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKA 186 (225)
Q Consensus 125 ~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A 186 (225)
.++..=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-+++
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~ 67 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKS 67 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44566677888899999999999999999999999999999999999999999998766543
No 34
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=73.38 E-value=17 Score=24.10 Aligned_cols=66 Identities=15% Similarity=0.252 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
-..++.+=...|.+|..-..+|..|..+=+.+|..=...++....||+.+...+.+|...-.++.+
T Consensus 8 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rk 73 (77)
T 1jth_B 8 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARR 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 345566667788888888999999999999999999999999999999999999999887665443
No 35
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=65.76 E-value=29 Score=23.70 Aligned_cols=61 Identities=21% Similarity=0.335 Sum_probs=33.2
Q ss_pred hhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 027280 104 SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNI 165 (225)
Q Consensus 104 ~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~I 165 (225)
+++++.. +.+.++.....+|.+-+.=|+.|..+...|..|.+.-.+|..+..+=..|-+-|
T Consensus 18 se~YWk~-lAE~Rr~AL~eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~~~q~la~~i 78 (83)
T 1wlq_A 18 SSQYWKE-VAEQRRKALYEALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAEVI 78 (83)
T ss_dssp TCTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445543 333333334456666666666777766666666666666666554433443333
No 36
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=64.26 E-value=26 Score=22.61 Aligned_cols=57 Identities=14% Similarity=0.248 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 124 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 124 l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
..++.+=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444555666777777777778888888788887777788888888888887777764
No 37
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=63.30 E-value=25 Score=23.22 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSA 172 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a 172 (225)
.|..+...+.++..+..+=-.-|-+.||-||.+.+..+.-
T Consensus 9 ~l~~vq~el~ev~~iM~~NI~~vL~RgekLd~L~~ks~~L 48 (74)
T 2nps_A 9 KIKHVQNQVDEVIDVMQENITKVIERGERLDELQDKSESL 48 (74)
T ss_dssp SSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566777788888888888888889999999887766653
No 38
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=63.25 E-value=45 Score=26.64 Aligned_cols=72 Identities=18% Similarity=0.306 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027280 104 SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 176 (225)
Q Consensus 104 ~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 176 (225)
++++++. +.+.++..+..+|.+-+.=|.+|..++..|..|.++-.+|..|+..=..+.+-|+.=+....++.
T Consensus 95 se~YWk~-lAE~RR~AL~eaLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~~~~~~~~ 166 (209)
T 2wvr_A 95 SSQYWKE-VAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLNGEPLDNF 166 (209)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred cHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 4455553 33444444556777777777888878777777777777776666665555555555444444433
No 39
>3n27_A Fusion glycoprotein F0, linker, fusion glycoprote; fusion protein, chimera protein, fusion inhibitor, antivirus viral protein; HET: CIT; 1.80A {Hendravirus}
Probab=59.54 E-value=38 Score=22.92 Aligned_cols=61 Identities=11% Similarity=0.261 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 126 EIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 126 ~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
.++.-.+.|.+|......+.-...-+-..|..+|.+ .|.-|+..|....+.....|.++..
T Consensus 14 SIq~TN~AV~eL~~a~~~t~iAIqaIQd~IN~~~~~--dis~~l~~a~~~l~~sk~~~~~~~~ 74 (80)
T 3n27_A 14 SIESTNEAVVKLQETAEKTVYVLTALQDYSGGSGGI--DISIELNKAKSDLEESKEWIRRSNQ 74 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----CH--HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc--chhhhHhHHHhhHHHHHHHHHHHHH
Confidence 355666677777766666666666666666677765 5777788999999999999988765
No 40
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=58.01 E-value=39 Score=22.69 Aligned_cols=46 Identities=9% Similarity=0.077 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQS 178 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~ 178 (225)
.|..||..+.-.-+...+|+..|..|...||.+...+..-...+..
T Consensus 15 Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~ 60 (78)
T 3efg_A 15 RLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGK 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888888888888889999999988888776666544
No 41
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=56.96 E-value=33 Score=22.96 Aligned_cols=39 Identities=8% Similarity=0.135 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 171 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~ 171 (225)
.|..+...+.++..++.+=-.-|-+.||-||.+++..+.
T Consensus 16 ~l~~vq~el~ev~~iM~~NI~~vLeRGekLd~L~~kt~~ 54 (80)
T 1l4a_A 16 RLQQTQAQVEEVVDIMRVNVDKVLERDSKISELDDRADA 54 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 567778888888888888888899999999999877665
No 42
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=56.65 E-value=42 Score=22.53 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 123 TLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTAL 183 (225)
Q Consensus 123 ~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L 183 (225)
-..++.+=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+.-
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q 79 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQ 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455677777888899999999999999999999999999999999999999999987654
No 43
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=55.60 E-value=6.2 Score=26.96 Aligned_cols=32 Identities=28% Similarity=0.374 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Q 027280 161 MLDNIESQVSSAVDHVQSGNTALQKAKKLQKN 192 (225)
Q Consensus 161 ~id~Ie~nv~~a~~~v~~~~~~L~~A~~~qk~ 192 (225)
+.|.++..++...+.+..+..-|..|.+--++
T Consensus 14 ~~d~~~~~~e~~~~f~kd~~rvlk~~~KPdr~ 45 (80)
T 2ww9_B 14 SNNQVEKLVEAPVEFVREGTQFLAKCKKPDLK 45 (80)
T ss_dssp -------CCHHHHHHHHHHHHHHHSCCCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 45777777888888888888887765544433
No 44
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.43 E-value=80 Score=28.95 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 027280 127 IQERHDAVRDLERKL 141 (225)
Q Consensus 127 i~~R~~~i~~ie~~i 141 (225)
|++...+|++||.+|
T Consensus 140 Ledq~~kIQRLEvDI 154 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDI 154 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444455555444
No 45
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=54.69 E-value=39 Score=21.57 Aligned_cols=56 Identities=13% Similarity=0.250 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 125 AEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 125 ~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
.++..=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34555566777788888888888888888888888888888888888888887764
No 46
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=52.57 E-value=57 Score=26.21 Aligned_cols=20 Identities=15% Similarity=0.318 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 027280 6 DEVGKISRFIKSKIEELDRE 25 (225)
Q Consensus 6 ~ei~~l~~~ik~~l~~l~~~ 25 (225)
.-|+++|..||+-|..++.=
T Consensus 122 ~tIKeIAsaIKklLDAvn~v 141 (213)
T 3ajm_A 122 QTIKDIASAIKELLDTVNNV 141 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999888664
No 47
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=52.52 E-value=56 Score=22.72 Aligned_cols=56 Identities=18% Similarity=0.267 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 4 DVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQ 64 (225)
Q Consensus 4 ~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~ 64 (225)
...|+......+...|+.|.+++...+.. ...+..-|+..+..+..++..+-..++
T Consensus 37 ~~~El~~~l~el~e~l~DL~~SI~i~e~~-----~~~EI~~Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 37 QEEEIQDILKDVEETIVDLDRSIIVMKRD-----ENEDVSGREAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHTS-----TTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45778888888888888888876554322 223456677777777777666655553
No 48
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=52.34 E-value=35 Score=20.66 Aligned_cols=24 Identities=13% Similarity=0.271 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 46 TATTLGLKKKFKDKMGEFQVLREN 69 (225)
Q Consensus 46 ~~~~~~L~~~f~~~~~~f~~~q~~ 69 (225)
.+.++.|..+|..++.+|.+.|.+
T Consensus 11 e~~ld~LqTr~ArLlae~~ssq~K 34 (46)
T 3swy_A 11 GSSLDTLQTRFARLLAEYNATQMK 34 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888999999999999987643
No 49
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=51.51 E-value=55 Score=22.33 Aligned_cols=53 Identities=17% Similarity=0.346 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHhchhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 104 SEQIFQKAIQEQGRGQIMDTLAEIQERHDAVRDLERKLLELQQIFLDMAVLVDA 157 (225)
Q Consensus 104 ~~~~~q~~~~~~~~~q~~~~l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~ 157 (225)
++.+++ .+...++.....+|.+-+.=|..|..++..+..+..+..++..|+..
T Consensus 26 se~YWk-~lAE~RR~AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~ 78 (83)
T 1uii_A 26 SSQYWK-EVAEKRRKALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 78 (83)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554 34444454556778888888899999999999999999988888754
No 50
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=49.49 E-value=47 Score=20.99 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAV 173 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~ 173 (225)
+.|..+...+.++..++.+=-.-|-+.||-||.+++..+.-.
T Consensus 4 d~l~~v~~~l~ev~~iM~~NI~~vl~RGekLd~L~~ks~~L~ 45 (63)
T 1n7s_A 4 RRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 45 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 467788899999999999999999999999999887666533
No 51
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=48.43 E-value=52 Score=21.19 Aligned_cols=58 Identities=12% Similarity=0.262 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 027280 124 LAEIQERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNT 181 (225)
Q Consensus 124 l~~i~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~ 181 (225)
..++.+=...|..|..-..+|..|..+=+.+|..=...++....||+.+...+.+|.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777788888888888888888888888888888888888888765
No 52
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=45.23 E-value=55 Score=20.56 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027280 133 AVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 171 (225)
Q Consensus 133 ~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~ 171 (225)
.+.++...+.++..+..+=-.-|-+.||-||.+.+..+.
T Consensus 3 ~l~~vq~~l~evk~iM~~NI~~vl~RgekLd~L~~ks~~ 41 (61)
T 3b5n_A 3 RTAELQAEIDDTVGIMRDNINKVAERGERLTSIEDKADN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 467888899999999999888899999999998776665
No 53
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=42.79 E-value=64 Score=20.57 Aligned_cols=40 Identities=23% Similarity=0.406 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 171 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~ 171 (225)
..|..+...+.++..++.+=-.-|-+.||-||.+.+..+.
T Consensus 9 d~l~~vq~~l~evk~iM~~NI~~vL~RgekLd~L~~ks~~ 48 (65)
T 1gl2_A 9 DRVRNLQSEVEGVKNIMTQNVERILARGENLDHLRNKTED 48 (65)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4577788888888888888888888999999888766655
No 54
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=42.62 E-value=19 Score=22.64 Aligned_cols=22 Identities=5% Similarity=0.360 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIK 217 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~ 217 (225)
|..++.+++.++++++++.+++
T Consensus 10 WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444433
No 55
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.59 E-value=19 Score=22.65 Aligned_cols=22 Identities=9% Similarity=0.113 Sum_probs=9.3
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHh
Q 027280 195 KWMC-IAIIILLIIVAIIVVAVI 216 (225)
Q Consensus 195 k~~~-~~~~i~~ii~~ii~~~i~ 216 (225)
+|+. ++.+++.++++++++.++
T Consensus 11 p~wiIi~svl~GLllL~li~~~L 33 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAM 33 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 333344444444444443
No 56
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=42.03 E-value=76 Score=21.24 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 132 DAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 132 ~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
..|..-..-+.|--++=.....-+..|.|.|.+....+..+..++..+.+-|..-.+
T Consensus 19 ~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~r 75 (81)
T 2nps_C 19 RRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLR 75 (81)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHH
Confidence 344555555666666667777778999999999999999999999999998876444
No 57
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=41.86 E-value=56 Score=21.80 Aligned_cols=29 Identities=10% Similarity=0.354 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 46 TATTLGLKKKFKDKMGEFQVLRENIHQEYREVV 78 (225)
Q Consensus 46 ~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~~~ 78 (225)
.+.++.|..+|..++.+|.+.|. +.|.|+
T Consensus 13 E~sld~LQTrfARLLaEy~ssQ~----KLKqRi 41 (74)
T 3swf_A 13 ESSVDLLQTRFARILAEYESMQQ----KLKQRL 41 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 45688899999999999998764 444554
No 58
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=40.95 E-value=69 Score=20.48 Aligned_cols=38 Identities=11% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 027280 134 VRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSS 171 (225)
Q Consensus 134 i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~ 171 (225)
|..+...+.++.+++.+--.-|.+.|+-|+.+++-.+.
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~ 43 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLSDLEERTAA 43 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777888777888888888888776665
No 59
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=39.34 E-value=35 Score=20.19 Aligned_cols=22 Identities=14% Similarity=0.326 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhc
Q 027280 196 WMCIAIIILLIIVAIIVVAVIK 217 (225)
Q Consensus 196 ~~~~~~~i~~ii~~ii~~~i~~ 217 (225)
|..++.+++.++++++++.+++
T Consensus 11 wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444455554544
No 60
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=34.87 E-value=1.5e+02 Score=22.64 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 027280 131 HDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHV 176 (225)
Q Consensus 131 ~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v 176 (225)
.-....|......|+.+-..|-.|+..|.+-++.+|..|.....-|
T Consensus 53 ~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v 98 (159)
T 3p8c_F 53 AYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTV 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788888999999999999999999999999988755443
No 61
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=34.68 E-value=76 Score=23.35 Aligned_cols=55 Identities=15% Similarity=0.150 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccCC-CCCCCcHHHHHHHHHHHHHHHHHHHH
Q 027280 5 VDEVGKISRFIKSKIEELDRENLTSRQKP-GCGKGTGVDRSRTATTLGLKKKFKDK 59 (225)
Q Consensus 5 ~~ei~~l~~~ik~~l~~l~~~~~~~~~~~-~~~~~s~e~rir~~~~~~L~~~f~~~ 59 (225)
..|+......|+.+|+.|.+.+......| .++-+..|..-|+..+..+..++.++
T Consensus 69 ~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~m 124 (130)
T 4dnd_A 69 TNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEM 124 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555556666666666544322222 12223345555666666666655543
No 62
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=31.73 E-value=1.9e+02 Score=22.92 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 128 QERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 128 ~~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
.+-...+..|...+.++.+++.+++..+.+|...++.|..++.....-++...
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 195 (227)
T 1qu7_A 143 ESAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 195 (227)
T ss_dssp HHHTTHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344667788888999999999999999999999999888877665555443
No 63
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=31.09 E-value=15 Score=24.59 Aligned_cols=24 Identities=8% Similarity=0.158 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 165 IESQVSSAVDHVQSGNTALQKAKK 188 (225)
Q Consensus 165 Ie~nv~~a~~~v~~~~~~L~~A~~ 188 (225)
++..++...+.+..+..-+..|.+
T Consensus 5 ~~~~~e~~~~f~kd~~rvlk~~~K 28 (74)
T 1rh5_B 5 FNQKIEQLKEFIEECRRVWLVLKK 28 (74)
T ss_dssp -------CCHHHHHHHHHHHSEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344555556666666666655443
No 64
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=28.36 E-value=2.6e+02 Score=23.41 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 027280 129 ERHDAVRDLERKLLELQQIFLDMAVLVDAQGDMLDNIESQVSSAVDHVQSGN 180 (225)
Q Consensus 129 ~R~~~i~~ie~~i~el~~lf~dl~~lV~~Qge~id~Ie~nv~~a~~~v~~~~ 180 (225)
.-...+..|...+.++.+.+.+++.-+.+|...++.|..++.....-++...
T Consensus 224 ~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~~~~~i~~~i~~i~~~~~~~~ 275 (341)
T 3zx6_A 224 SAGETMAEIVSAVTRVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNA 275 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778888888888899999899998888888877776655554433
No 65
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=28.16 E-value=3e+02 Score=24.04 Aligned_cols=15 Identities=13% Similarity=0.370 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHH
Q 027280 127 IQERHDAVRDLERKL 141 (225)
Q Consensus 127 i~~R~~~i~~ie~~i 141 (225)
+++...+|++||..|
T Consensus 143 l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 143 VRDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555555
No 66
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=26.99 E-value=1.4e+02 Score=19.77 Aligned_cols=73 Identities=7% Similarity=-0.006 Sum_probs=37.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 3 KDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQVLRENIHQEYRE 76 (225)
Q Consensus 3 ~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~~q~~~~~~~k~ 76 (225)
.....+...+..|...+..|......+... =.++.+..+.-.-+.+..-..+|.+++..+..........|++
T Consensus 15 ~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~-W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~ 87 (98)
T 3gwk_C 15 SSAQKYTAGSQQVTEVLNLLTQEQAVIDEN-WDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQ 87 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-BCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777765543211 0122233333333334444445555555555444444444433
No 67
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=24.62 E-value=9.2 Score=25.26 Aligned_cols=31 Identities=10% Similarity=0.140 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccccchhHH
Q 027280 168 QVSSAVDHVQSGNTALQKAKKLQKNSRKWMC 198 (225)
Q Consensus 168 nv~~a~~~v~~~~~~L~~A~~~qk~~rk~~~ 198 (225)
.++...+.+..+..-+++|.+--++-....+
T Consensus 7 ~~e~~~~f~k~~~r~lk~~~KPdr~Ef~~ia 37 (68)
T 2wwb_B 7 FVEPSRQFVKDSIRLVKRCTKPDRKEFQKIA 37 (68)
T ss_dssp SSTTHHHHHHHHHHHHHHCCCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3455667777777777665544443333333
No 68
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=23.69 E-value=1.6e+02 Score=19.29 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTS 29 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~ 29 (225)
+.....+...+..|...+..|......+
T Consensus 15 ~~~A~~~~~~~~~i~~~l~~L~~~v~~L 42 (99)
T 3zbh_A 15 RGVARQYNVESSNVTELIARLDQMSHTL 42 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777765443
No 69
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=23.36 E-value=1.6e+02 Score=19.16 Aligned_cols=28 Identities=14% Similarity=0.127 Sum_probs=20.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 027280 2 EKDVDEVGKISRFIKSKIEELDRENLTS 29 (225)
Q Consensus 2 ~~~~~ei~~l~~~ik~~l~~l~~~~~~~ 29 (225)
+.....+...+..|...+..|......+
T Consensus 15 ~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 15 ERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778888888888888876554
No 70
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=22.07 E-value=1.9e+02 Score=19.46 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Q 027280 121 MDTLAEIQERHDAVRDLERKLLEL 144 (225)
Q Consensus 121 ~~~l~~i~~R~~~i~~ie~~i~el 144 (225)
..+|.+-+.=|.+|..+...|..|
T Consensus 30 ~eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 30 YEALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444443333
No 71
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=21.65 E-value=1.8e+02 Score=19.05 Aligned_cols=64 Identities=9% Similarity=0.050 Sum_probs=37.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 027280 1 MEKDVDEVGKISRFIKSKIEELDRENLTSRQKPGCGKGTGVDRSRTATTLGLKKKFKDKMGEFQV 65 (225)
Q Consensus 1 ~~~~~~ei~~l~~~ik~~l~~l~~~~~~~~~~~~~~~~s~e~rir~~~~~~L~~~f~~~~~~f~~ 65 (225)
|+....++...+..|...|..|+.....+... =.+......+-....++.=..++..++..+..
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~-W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~ 73 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTKLAAA-WGGSGSEAYQGVQQKWDATATELNNALQNLAR 73 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGG-GTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888899999999998876554311 01223333444444444444444444444443
No 72
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=21.26 E-value=95 Score=20.62 Aligned_cols=16 Identities=13% Similarity=0.351 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 027280 200 AIIILLIIVAIIVVAV 215 (225)
Q Consensus 200 ~~~i~~ii~~ii~~~i 215 (225)
+.+++..|++++.+.|
T Consensus 22 gGLifA~vLfi~GI~i 37 (74)
T 2zxe_G 22 VGLIVAAVLCVIGIII 37 (74)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHH
Confidence 3444433333344333
Done!