BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027281
(225 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4H8T|A Chain A, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
pdb|4H8T|B Chain B, Structure Of Haze Forming Proteins In White Wines: Vitis
Vinifera Thaumatin-Like Proteins
Length = 198
Score = 289 bits (739), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 139/201 (69%), Positives = 162/201 (80%), Gaps = 7/201 (3%)
Query: 27 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCET 86
FDI N C TVWAAA PGGGR+LD GQ+WTIT PGT ARIW RT C FDA+G+GKCET
Sbjct: 3 FDILNKCTYTVWAAASPGGGRRLDSGQSWTITVNPGTTNARIWGRTSCTFDANGRGKCET 62
Query: 87 GDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKC 146
GDCNGLLECQGYG+ PNTLAE+AL Q N++D+ID+S +DGFN+PM+FS R I+C
Sbjct: 63 GDCNGLLECQGYGSPPNTLAEFALNQPNNLDYIDISLVDGFNIPMDFSGC-----RGIQC 117
Query: 147 TANILGECPNELKVPGGCNGPCPVFKTDEYCCNS--GNCGPTGFSKFFKDRCPDVYSYPK 204
+ +I G+CP+ELK PGGCN PC VFKT+EYCC G+CGPT +SKFFKDRCPD YSYP+
Sbjct: 118 SVDINGQCPSELKAPGGCNNPCTVFKTNEYCCTDGPGSCGPTTYSKFFKDRCPDAYSYPQ 177
Query: 205 DDATSTFTCPSGTDYKVVFCP 225
DD TS FTCPSGT+YKV FCP
Sbjct: 178 DDKTSLFTCPSGTNYKVTFCP 198
>pdb|1Z3Q|A Chain A, Resolution Of The Structure Of The Allergenic And
Antifungal Banana Fruit Thaumatin-Like Protein At 1.7a
Length = 200
Score = 281 bits (720), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 131/199 (65%), Positives = 154/199 (77%), Gaps = 1/199 (0%)
Query: 27 FDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCET 86
F+I N C TVWAAAVPGGGRQL++GQ+WTI GT RIW RT C FD SG+G+C+T
Sbjct: 3 FEIVNRCSYTVWAAAVPGGGRQLNQGQSWTINVNAGTTGGRIWGRTGCSFDGSGRGRCQT 62
Query: 87 GDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKC 146
GDC G+L C YG PNTLAE+AL QFN++DF D+S +DGFNVPM+FS S C R I+C
Sbjct: 63 GDCGGVLSCTAYGNPPNTLAEFALNQFNNLDFFDISLVDGFNVPMDFSPTSGGC-RGIRC 121
Query: 147 TANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYPKDD 206
A+I G+CP LK PGGCN PC VFKTD+YCCNSG C PT +S+FFK CPD YSYPKDD
Sbjct: 122 AADINGQCPGALKAPGGCNNPCTVFKTDQYCCNSGACSPTDYSQFFKRNCPDAYSYPKDD 181
Query: 207 ATSTFTCPSGTDYKVVFCP 225
T+TFTCP GT+Y+VVFCP
Sbjct: 182 QTTTFTCPGGTNYRVVFCP 200
>pdb|1PCV|A Chain A, Crystal Structure Of Osmotin, A Plant Antifungal Protein
pdb|1PCV|B Chain B, Crystal Structure Of Osmotin, A Plant Antifungal Protein
Length = 205
Score = 269 bits (688), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 128/203 (63%), Positives = 155/203 (76%), Gaps = 4/203 (1%)
Query: 27 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCE 85
++ NNCP TVWAA+ P GGGR+LD+GQTW I A GTK AR+W RT C F+A+G+G C+
Sbjct: 3 IEVRNNCPYTVWAASTPIGGGRRLDRGQTWVINAPRGTKMARVWGRTNCNFNAAGRGTCQ 62
Query: 86 TGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--V 143
TGDC G+L+C G+G PNTLAEYAL QF+ +DF D+S +DGFN+PM F+ +PS +
Sbjct: 63 TGDCGGVLQCTGWGKPPNTLAEYALDQFSGLDFWDISLVDGFNIPMTFAPTNPSGGKCHA 122
Query: 144 IKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYP 203
I CTANI GECP EL+VPGGCN PC F +YCC G CGPT FSKFFK RCPD YSYP
Sbjct: 123 IHCTANINGECPRELRVPGGCNNPCTTFGGQQYCCTQGPCGPTFFSKFFKQRCPDAYSYP 182
Query: 204 KDDATSTFTCPSG-TDYKVVFCP 225
+DD TSTFTCP G T+Y+V+FCP
Sbjct: 183 QDDPTSTFTCPGGSTNYRVIFCP 205
>pdb|1DU5|A Chain A, The Crystal Structure Of Zeamatin.
pdb|1DU5|B Chain B, The Crystal Structure Of Zeamatin
Length = 206
Score = 268 bits (684), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 131/204 (64%), Positives = 157/204 (76%), Gaps = 5/204 (2%)
Query: 27 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCE 85
F + N CP TVWAA+VP GGGRQL++G++W ITA GT AARIWART C+FDASG+G C
Sbjct: 3 FTVVNQCPFTVWAASVPVGGGRQLNRGESWRITAPAGTTAARIWARTGCKFDASGRGSCR 62
Query: 86 TGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPS-CNRVI 144
TGDC G+L+C GYG APNTLAEYALKQFN++DF D+S IDGFNVPM F S C+R
Sbjct: 63 TGDCGGVLQCTGYGRAPNTLAEYALKQFNNLDFFDISLIDGFNVPMSFLPDGGSGCSRGP 122
Query: 145 KCTANILGECPNELKVPGGCNGPCPVFKTDEYCC---NSGNCGPTGFSKFFKDRCPDVYS 201
+C ++ CP EL+ G CN CPVFK DEYCC + +C PT +S++FK +CPD YS
Sbjct: 123 RCAVDVNARCPAELRQDGVCNNACPVFKKDEYCCVGSAANDCHPTNYSRYFKGQCPDAYS 182
Query: 202 YPKDDATSTFTCPSGTDYKVVFCP 225
YPKDDATSTFTCP+GT+YKVVFCP
Sbjct: 183 YPKDDATSTFTCPAGTNYKVVFCP 206
>pdb|2I0W|A Chain A, Crystal Structure Analysis Of Np24-I, A Thaumatin-Like
Protein
Length = 207
Score = 266 bits (680), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 128/203 (63%), Positives = 153/203 (75%), Gaps = 4/203 (1%)
Query: 27 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCE 85
++ NNCP TVWAA+ P GGGR+L++GQTW I A GTK ARIW RT C F+A+G+G C+
Sbjct: 3 IEVRNNCPYTVWAASTPIGGGRRLNRGQTWVINAPRGTKMARIWGRTGCNFNAAGRGTCQ 62
Query: 86 TGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNR--V 143
TGDC G+L+C G+G PNTLAEYAL QF+++DF D+S +DGFN+PM F+ PS +
Sbjct: 63 TGDCGGVLQCTGWGKPPNTLAEYALDQFSNLDFWDISLVDGFNIPMTFAPTKPSGGKCHA 122
Query: 144 IKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYP 203
I CTANI GECP LKVPGGCN PC F +YCC G CGPT SKFFK RCPD YSYP
Sbjct: 123 IHCTANINGECPRALKVPGGCNNPCTTFGGQQYCCTQGPCGPTELSKFFKKRCPDAYSYP 182
Query: 204 KDDATSTFTCPSG-TDYKVVFCP 225
+DD TSTFTCP G T+Y+VVFCP
Sbjct: 183 QDDPTSTFTCPGGSTNYRVVFCP 205
>pdb|1AUN|A Chain A, Pathogenesis-Related Protein 5d From Nicotiana Tabacum
Length = 208
Score = 263 bits (673), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 127/203 (62%), Positives = 152/203 (74%), Gaps = 4/203 (1%)
Query: 27 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCE 85
F++ NNCP TVWAAA P GGGR+L++GQ+W A PGTK ARIW RT C FD +G+G C+
Sbjct: 4 FEVHNNCPYTVWAAATPVGGGRRLERGQSWWFWAPPGTKMARIWGRTNCNFDGAGRGWCQ 63
Query: 86 TGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRV-- 143
TGDC G+LEC+G+G PNTLAEYAL QF+++DF D+S IDGFN+PM F P +
Sbjct: 64 TGDCGGVLECKGWGKPPNTLAEYALNQFSNLDFWDISVIDGFNIPMSFGPTKPGPGKCHG 123
Query: 144 IKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDVYSYP 203
I+CTANI GECP L+VPGGCN PC F +YCC G CGPT S++FK RCPD YSYP
Sbjct: 124 IQCTANINGECPGSLRVPGGCNNPCTTFGGQQYCCTQGPCGPTELSRWFKQRCPDAYSYP 183
Query: 204 KDDATSTFTCPSG-TDYKVVFCP 225
+DD TSTFTC S TDYKV+FCP
Sbjct: 184 QDDPTSTFTCTSWTTDYKVMFCP 206
>pdb|3AOK|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin Ii
Length = 207
Score = 229 bits (583), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 144/206 (69%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGTK +IWART C FD SG
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
+G C TGDC GLL+C+ +G P TLAE++L Q+ D+ID+SNI GFNVPM+FS + C
Sbjct: 63 RGICRTGDCGGLLQCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT +S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1RQW|A Chain A, Thaumatin Structure At 1.05 A Resolution
pdb|2A7I|X Chain X, On The Routine Use Of Soft X-Rays In Macromolecular
Crystallography, Part Iii- The Optimal Data Collection
Wavelength
pdb|2G4Y|A Chain A, Structure Of Thaumatin At 2.0 A Wavelength
pdb|1THU|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|1THW|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|3DZN|A Chain A, Thaumatin By Lb Nanotemplate Method Before High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZP|A Chain A, Thaumatin By Lb Nanotemplate Method After High X-Ray Dose
On Esrf Id29 Beamline
pdb|3DZR|A Chain A, Thaumatin By Classical Hanging Drop Method Before High
X-Ray Dose On Esrf Id29 Beamline
pdb|3E0A|A Chain A, Thaumatin By Classical Hanging Drop Method After High
X-Ray Dose On Esrf Id29 Beamline
pdb|4DIY|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DIZ|A Chain A, Thaumatin I By Classical Hanging Drop Method At 1.98a
Resolution For Unique Water Distribution
pdb|4DJ0|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4DJ1|A Chain A, Thaumatin I By Langmuir-Blodgett Hanging Drop Method At
1.98a Resolution For Unique Water Distribution
pdb|4EK0|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 25 K
pdb|4EKA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 25 K
pdb|4EKB|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 100 K
pdb|4EKH|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 100 K
pdb|4EKO|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 180 K
pdb|4EKT|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 180 K
pdb|4EL2|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 240 K
pdb|4EL3|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 240 K
pdb|4EL7|A Chain A, Initial Thaumatin Structure For Radiation Damage
Experiment At 300 K
pdb|4ELA|A Chain A, Final Thaumatin Structure For Radiation Damage Experiment
At 300 K
Length = 207
Score = 227 bits (579), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 114/206 (55%), Positives = 143/206 (69%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGTK +IWART C FD SG
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTKGGKIWARTDCYFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
G C+TGDC GLL C+ +G P TLAE++L Q+ D+ID+SNI GFNVPM+FS + C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT +S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1THV|A Chain A, The Structures Of Three Crystal Forms Of The Sweet Protein
Thaumatin
pdb|2PE7|A Chain A, Thaumatin From Thaumatococcus Danielli In Complex With
Tris- Dipicolinate Europium
pdb|3E3S|A Chain A, Structure Of Thaumatin With The Magic Triangle I3c
pdb|3AL7|A Chain A, Recombinant Thaumatin I At 1.1 A
pdb|3ALD|A Chain A, Crystal Structure Of Sweet-Tasting Protein Thaumatin I At
1.10 A
pdb|3VHF|A Chain A, Plant Thaumatin I At Ph 8.0
pdb|3VJQ|A Chain A, Recombinant Thaumatin At Ph 8.0 With Hydrogen Atoms
pdb|3VHG|A Chain A, Recombinant Thaumatin I At Ph 8.0
pdb|3V7V|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V82|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V84|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V87|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
1.81 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3V88|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3V8A|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCE|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCG|A Chain A, Thaumatin By Lb Based Hanging Drop Vapour Diffusion After
18.1 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCH|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCI|A Chain A, Thaumatin By Classical Hanging Drop Vapour Diffusion After
9.05 Mgy X- Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|3VCJ|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Best Case)
pdb|3VCK|A Chain A, Thaumatin By Lb Hanging Drop Vapour Diffusion After 9.05
Mgy X-Ray Dose At Esrf Id29 Beamline (Worst Case)
pdb|4DC5|A Chain A, Crystal Structure Of Thaumatin Unexposed To Excessive
Sonicc Imaging Laser Dose.
pdb|4DC6|A Chain A, Crystal Structure Of Thaumatin Exposed To Excessive Sonicc
Imaging Laser Dose
Length = 207
Score = 225 bits (574), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 142/206 (68%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGT +IWART C FD SG
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
G C+TGDC GLL C+ +G P TLAE++L Q+ D+ID+SNI GFNVPM+FS + C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMDFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT +S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|1KWN|A Chain A, 1.2 A Structure Of Thaumatin Crystallized In Gel
pdb|1LXZ|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LY0|A Chain A, Structure Of Thaumatin Crystallized In The Presence Of
Glycerol
pdb|1LR2|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1LR3|A Chain A, Crystal Structure Of Thaumatin At High Hydrostatic
Pressure
pdb|1PP3|A Chain A, Structure Of Thaumatin In A Hexagonal Space Group
pdb|1PP3|B Chain B, Structure Of Thaumatin In A Hexagonal Space Group
pdb|2OQN|A Chain A, High Pressure Cryocooling Of Capillary Sample
Cryoprotection And Diffraction Phasing At Long
Wavelengths
pdb|1THI|A Chain A, Crystal Structures Of Two Intensely Sweet Proteins
pdb|2VHR|A Chain A, Atomic Resolution (0.95a) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 4 C
pdb|2VI1|A Chain A, Atomic Resolution (1.04 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 22 C.
pdb|2VI2|A Chain A, Atomic Resolution (1.05 A) Structure Of Purified Thaumatin
I Grown In Sodium D-Tartrate At 4c
pdb|2VI3|A Chain A, Atomic Resolution (0.98 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 20 C
pdb|2VI4|A Chain A, Atomic Resolution (1.10 A) Structure Of Purified Thaumatin
I Grown In Sodium Dl-Tartrate At 6 C.
pdb|2VU6|A Chain A, Atomic Resolution (0.95 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 19 C.
pdb|2VU7|A Chain A, Atomic Resolution (1.08 A) Structure Of Purified Thaumatin
I Grown In Sodium Meso-Tartrate At 4 C
pdb|3QY5|A Chain A, Microfluidic Crystallization Of Thaumatin Using The
Crystal Former
pdb|4AXR|A Chain A, Crystal Structure Of Thaumatin From A Auto-Harvested
Crystal
pdb|4BAL|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-
Hydroxymethyltriazoledipicolinate Complex At 1.30 A
Resolution.
pdb|4BAR|A Chain A, Thaumatin From Thaumatococcus Daniellii Structure In
Complex With The Europium Tris-Hydroxyethyltriazole
Dipicolinate Complex At 1.20 A Resolution.
pdb|3ZEJ|A Chain A, Thaumatin Structure Determined At Room Temperature By
In-Situ Diffraction In Chipx
Length = 207
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 141/206 (68%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGT +IWART C FD SG
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
G C+TGDC GLL C+ +G P TLAE++L Q+ D+ID+SNI GFNVPM FS + C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT +S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2BLR|A Chain A, Thaumatin Before A High Dose X-Ray "burn"
pdb|2BLU|A Chain A, Thaumatin After A High Dose X-Ray "burn"
pdb|2VHK|A Chain A, Atomic Resolution (0.94 A) Structure Of Purified Thaumatin
I Grown In Sodium L-Tartrate At 22c
pdb|2WBZ|A Chain A, 1.6 A Structure Of Thaumatin Crystallized Without Tartrate
At 4 C
pdb|3N02|A Chain A, Thaumatic Crystals Grown In Loops/micromounts
pdb|3N03|A Chain A, Thaumatin Crystals Grown From Drops
pdb|4AXU|A Chain A, Crystal Structure Of Thaumatin From An Auto-Harvested
Crystal, Control Experiment
Length = 206
Score = 224 bits (572), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 141/206 (68%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGT +IWART C FD SG
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCYFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
G C+TGDC GLL C+ +G P TLAE++L Q+ D+ID+SNI GFNVPM FS + C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQYGK-DYIDISNIKGFNVPMNFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT +S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEYSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2D8O|A Chain A, Structure Of Vil-Thaumatin
Length = 207
Score = 221 bits (564), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 139/206 (67%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGT +IWART C FD SG
Sbjct: 3 FEIVNRCSYTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
G C+TGDC GLL C+ +G P TLAE++L Q D+ID+SNI GFNVPM FS + C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DYIDISNIKGFNVPMNFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEXSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|2D8P|A Chain A, Structure Of Hyper-Vil-Thaumatin
Length = 207
Score = 220 bits (561), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 113/206 (54%), Positives = 138/206 (66%), Gaps = 10/206 (4%)
Query: 27 FDITNNCPDTVWAAAVPG------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASG 80
F+I N C TVWAAA G GGRQL+ G++WTI PGT +IWART C FD SG
Sbjct: 3 FEIVNRCSXTVWAAASKGDAALDAGGRQLNSGESWTINVEPGTNGGKIWARTDCXFDDSG 62
Query: 81 KGKCETGDCNGLLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSC 140
G C+TGDC GLL C+ +G P TLAE++L Q D ID+SNI GFNVPM FS + C
Sbjct: 63 SGICKTGDCGGLLRCKRFGRPPTTLAEFSLNQXGK-DXIDISNIKGFNVPMNFSPTTRGC 121
Query: 141 NRVIKCTANILGECPNELKVP-GGCNGPCPVFKTDEYCCNSGNCGPTGFSKFFKDRCPDV 199
R ++C A+I+G+CP +LK P GGCN C VF+T EYCC +G CGPT S+FFK CPD
Sbjct: 122 -RGVRCAADIVGQCPAKLKAPGGGCNDACTVFQTSEYCCTTGKCGPTEXSRFFKRLCPDA 180
Query: 200 YSYPKDDATSTFTCPSGTDYKVVFCP 225
+SY D T T TCP ++Y+V FCP
Sbjct: 181 FSYVLDKPT-TVTCPGSSNYRVTFCP 205
>pdb|3ZS3|A Chain A, High Resolution Structure Of Mal D 2, The Thaumatin Like
Food Allergen From Apple
Length = 222
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 26 KFDITNNCPDTVWAAAVPGG--------GRQLDKGQTWTITAAPGTKAARIWARTKCQFD 77
K TNNCP+TVW + G G +L + ++ A P + R W RT+C D
Sbjct: 2 KITFTNNCPNTVWPGTLTGDQKPQLSLTGFELASKASRSVDA-PSPWSGRFWGRTRCSTD 60
Query: 78 ASGKGKCETGDC-NGLLECQGYGAAP-NTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSS 135
A+GK CET DC +G + C G GA P TL E + D+ D+S +DGFN+PM S
Sbjct: 61 AAGKFTCETADCGSGQVACNGAGAVPPATLVEITIAANGGQDYYDVSLVDGFNLPM---S 117
Query: 136 VSPSCN----RVIKCTANILGECPNELKVPGG------CNGPCPVFKTDEYCCNSGN--- 182
V+P + C AN+ CP L+V C C F +YCC N
Sbjct: 118 VAPQGGTGECKPSSCPANVNKVCPAPLQVKAADGSVISCKSACLAFGDSKYCCTPPNNTP 177
Query: 183 --CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 225
C PT +S+ F+ +CP YSY DD STFTC G DY + FCP
Sbjct: 178 ETCPPTEYSEIFEKQCPQAYSYAYDDKNSTFTCSGGPDYVITFCP 222
>pdb|2AHN|A Chain A, High Resolution Structure Of A Cherry Allergen Pru Av 2
Length = 222
Score = 123 bits (309), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 108/223 (48%), Gaps = 35/223 (15%)
Query: 31 NNCPDTVWAAAVPGGGRQLDKGQTWTITAAPGTKAA-----------RIWARTKCQFDAS 79
NNCP VW PG K Q T ++A+ R WART C DAS
Sbjct: 7 NNCPYMVW----PGTLTSDQKPQLSTTGFELASQASFQLDTPVPWNGRFWARTGCSTDAS 62
Query: 80 GKGKCETGDC-NGLLECQGYGAAP-NTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVS 137
GK C T DC +G + C G GA P TLAE+ + DF D+S +DGFN+PM SV+
Sbjct: 63 GKFVCATADCASGQVMCNGNGAIPPATLAEFNIPAGGGQDFYDVSLVDGFNLPM---SVT 119
Query: 138 PSCN----RVIKCTANILGECPNELKVPG------GCNGPCPVFKTDEYCCNS-----GN 182
P + C AN+ CP+EL+ G C C F T +YCC
Sbjct: 120 PQGGTGDCKTASCPANVNAVCPSELQKKGSDGSVVACLSACVKFGTPQYCCTPPQNTPET 179
Query: 183 CGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 225
C PT +S+ F + CPD YSY DD TFTC G +Y + FCP
Sbjct: 180 CPPTNYSEIFHNACPDAYSYAYDDKRGTFTCNGGPNYAITFCP 222
>pdb|3G7M|A Chain A, Structure Of The Thaumatin-Like Xylanase Inhibitor Tlxi
Length = 151
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 62/113 (54%), Gaps = 8/113 (7%)
Query: 27 FDITNNCPDTVWAA-----AVPGGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGK 81
ITN C TVW A A GGG +L G +W++ P + IW RT C FD +GK
Sbjct: 3 LTITNRCHFTVWPAVALVLAQGGGGTELHPGASWSLDT-PVIGSQYIWGRTGCSFDRAGK 61
Query: 82 GKCETGDCNG-LLECQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEF 133
G+C+TGDC G L C G A P T+AE ++ Q N + S + GFNVPM
Sbjct: 62 GRCQTGDCGGSSLTCGGNPAVPTTMAEVSVLQGN-YTYGVTSTLKGFNVPMNL 113
>pdb|2KHU|A Chain A, Solution Structure Of The Ubiquitin-Binding Motif Of Human
Polymerase Iota
pdb|2KHW|A Chain A, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
Length = 108
Score = 27.3 bits (59), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 205 DDATSTFTCPSGTDYKVVF 223
DDAT TFT G+D K+ F
Sbjct: 46 DDATKTFTVTEGSDEKITF 64
>pdb|2FQM|A Chain A, Crystal Structure Of The Oligomerization Domain Of The
Phosphoprotein Of Vesicular Stomatitis Virus
pdb|2FQM|B Chain B, Crystal Structure Of The Oligomerization Domain Of The
Phosphoprotein Of Vesicular Stomatitis Virus
pdb|2FQM|C Chain C, Crystal Structure Of The Oligomerization Domain Of The
Phosphoprotein Of Vesicular Stomatitis Virus
pdb|2FQM|D Chain D, Crystal Structure Of The Oligomerization Domain Of The
Phosphoprotein Of Vesicular Stomatitis Virus
pdb|2FQM|E Chain E, Crystal Structure Of The Oligomerization Domain Of The
Phosphoprotein Of Vesicular Stomatitis Virus
pdb|2FQM|F Chain F, Crystal Structure Of The Oligomerization Domain Of The
Phosphoprotein Of Vesicular Stomatitis Virus
Length = 75
Score = 27.3 bits (59), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 50 DKGQTWTITAAPGTKAARIWARTKCQFDASGKG 82
++ W +T ++A+ W +C F+ASG+G
Sbjct: 31 EQKSQWMLTIKAVVQSAKHWNLAECTFEASGEG 63
>pdb|3S4O|A Chain A, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
pdb|3S4O|B Chain B, Protein Tyrosine Phosphatase (Putative) From Leishmania
Major
Length = 167
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 183 CGPTGFSKFFKDRCPDVYSYPKDD 206
CGPT + K R DV+S+P DD
Sbjct: 55 CGPTYDATLVKSRGIDVHSWPFDD 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,336,327
Number of Sequences: 62578
Number of extensions: 322809
Number of successful extensions: 777
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 698
Number of HSP's gapped (non-prelim): 38
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)