Query 027281
Match_columns 225
No_of_seqs 138 out of 703
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 07:37:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/027281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/027281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd09218 TLP-PA allergenic/anti 100.0 3.7E-79 8.1E-84 528.7 15.6 197 26-224 1-219 (219)
2 smart00205 THN Thaumatin famil 100.0 3.3E-78 7.1E-83 522.7 16.4 198 27-225 1-218 (218)
3 cd09219 TLP-F thaumatin-like p 100.0 5E-78 1.1E-82 523.5 15.3 196 27-225 1-229 (229)
4 PF00314 Thaumatin: Thaumatin 100.0 1.7E-74 3.7E-79 498.8 6.3 193 31-225 1-213 (213)
5 cd09215 Thaumatin-like the swe 100.0 6.2E-60 1.4E-64 390.5 14.2 149 27-224 1-157 (157)
6 cd09217 TLP-P thaumatin and al 100.0 4.1E-55 8.8E-60 360.1 13.8 149 27-225 1-151 (151)
7 cd08961 GH64-TLP-SF glycoside 100.0 1.2E-49 2.6E-54 328.2 13.4 142 27-223 1-153 (153)
8 PF04681 Bys1: Blastomyces yea 98.5 4.1E-06 8.9E-11 69.6 12.9 47 100-147 71-120 (155)
9 cd09220 GH64-GluB-like glycosi 91.5 0.39 8.5E-06 45.2 5.6 77 51-136 62-145 (369)
10 cd09216 GH64-LPHase-like glyco 89.7 0.45 9.7E-06 44.6 4.3 77 50-137 60-143 (353)
11 PF07172 GRP: Glycine rich pro 74.5 2.5 5.5E-05 32.4 2.3 26 1-27 1-28 (95)
12 cd09214 GH64-like glycosyl hyd 68.4 4.5 9.8E-05 37.5 2.9 31 105-137 125-155 (319)
13 cd09214 GH64-like glycosyl hyd 67.2 3.7 8E-05 38.0 2.0 38 185-222 275-317 (319)
14 cd09220 GH64-GluB-like glycosi 56.4 11 0.00024 35.7 3.2 24 184-207 319-344 (369)
15 TIGR00192 urease_beta urease, 55.8 27 0.00058 27.3 4.6 52 20-72 17-94 (101)
16 cd00407 Urease_beta Urease bet 55.1 28 0.00061 27.1 4.7 53 20-72 17-94 (101)
17 cd09216 GH64-LPHase-like glyco 53.4 12 0.00027 35.1 2.9 23 185-207 309-333 (353)
18 PRK13202 ureB urease subunit b 50.9 44 0.00096 26.2 5.2 49 23-72 21-95 (104)
19 PRK13203 ureB urease subunit b 45.5 38 0.00082 26.5 4.1 51 20-71 17-93 (102)
20 PRK13201 ureB urease subunit b 42.9 52 0.0011 26.9 4.6 52 20-72 17-94 (136)
21 PRK13204 ureB urease subunit b 42.4 51 0.0011 27.6 4.6 52 20-72 40-117 (159)
22 PF08194 DIM: DIM protein; In 39.5 30 0.00065 22.1 2.2 12 22-33 21-32 (36)
23 PRK13198 ureB urease subunit b 38.7 64 0.0014 27.0 4.7 52 20-72 45-122 (158)
24 PRK13205 ureB urease subunit b 37.4 70 0.0015 26.8 4.7 52 20-72 17-94 (162)
25 PF00699 Urease_beta: Urease b 37.1 55 0.0012 25.5 3.8 51 20-71 16-92 (100)
26 PHA03094 dUTPase; Provisional 35.4 40 0.00087 27.4 3.0 29 46-75 35-69 (144)
27 TIGR03096 nitroso_cyanin nitro 35.2 1.1E+02 0.0023 25.1 5.4 22 47-69 94-115 (135)
28 PRK13986 urease subunit alpha; 35.0 79 0.0017 28.0 4.9 52 20-72 122-199 (225)
29 PF11142 DUF2917: Protein of u 33.7 47 0.001 23.3 2.7 24 47-70 2-29 (63)
30 PRK13192 bifunctional urease s 32.7 88 0.0019 27.4 4.7 51 20-71 126-202 (208)
31 PF12454 Ecm33: GPI-anchored c 31.5 61 0.0013 21.1 2.7 9 24-32 25-33 (40)
32 PF05991 NYN_YacP: YacP-like N 30.9 16 0.00034 30.4 -0.1 10 123-132 2-11 (166)
33 PF00947 Pico_P2A: Picornaviru 30.0 24 0.00052 28.6 0.8 17 80-96 83-99 (127)
34 cd05468 pVHL von Hippel-Landau 30.0 1.1E+02 0.0023 24.8 4.7 44 24-71 8-56 (141)
35 PRK02710 plastocyanin; Provisi 29.2 2.1E+02 0.0046 22.1 6.1 19 39-58 42-60 (119)
36 PLN00115 pollen allergen group 27.7 66 0.0014 25.6 2.9 65 1-69 1-72 (118)
37 PF13978 DUF4223: Protein of u 27.5 81 0.0018 21.8 2.9 23 19-41 17-41 (56)
38 PRK01904 hypothetical protein; 25.5 51 0.0011 28.6 2.1 15 18-32 15-29 (219)
39 PF11912 DUF3430: Protein of u 23.6 98 0.0021 25.8 3.5 14 117-130 117-130 (212)
40 PF07385 DUF1498: Protein of u 23.5 83 0.0018 27.9 3.0 26 44-72 153-178 (225)
41 cd07557 trimeric_dUTPase Trime 22.3 1.1E+02 0.0024 22.0 3.2 28 46-74 13-46 (92)
42 PF12099 DUF3575: Protein of u 21.5 67 0.0015 27.3 2.1 38 22-61 22-59 (189)
43 PF02495 7kD_coat: 7kD viral c 21.0 1.8E+02 0.004 19.8 3.9 13 23-36 32-44 (59)
No 1
>cd09218 TLP-PA allergenic/antifungal thaumatin-like proteins: plant and animal homologs. This subfamily is represented by the thaumatin-like proteins (TLPs), Cherry Allergen Pru Av 2 TLP, Peach PpAZ44 TLP (a propylene-induced TLP in abscission), the Caenorhabditis elegans thaumatin family member (thn-6), and other plant and animal homologs. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Due to their inducible expression by environmental stresses such as pathogen/pest attack, drought and cold, plant TLPs are classified as the pathogenesis-related (PR) protein family 5 (PR5). Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3; Japanese cedar, Cry j3). TLPs are three-domain, crescent-fold structures with either an electronegative, ele
Probab=100.00 E-value=3.7e-79 Score=528.70 Aligned_cols=197 Identities=49% Similarity=1.016 Sum_probs=186.5
Q ss_pred EEEEEeCCCCceeeeeeC--------CCceeecCCCeEEEEcCCCCcceeeeeecccccCCCCCcccccCCCCCceeecC
Q 027281 26 KFDITNNCPDTVWAAAVP--------GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQG 97 (225)
Q Consensus 26 t~ti~N~C~~tVwp~~~p--------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgCs~~~~g~~~C~TGdCgg~~~C~~ 97 (225)
+|||+|||+||||||+++ .+||+|+||++++|.+|++| +|||||||+|++|++|+++|+||||+|.++|++
T Consensus 1 tfti~N~C~~tVWp~~~~~~g~~~l~~gGf~L~~g~s~~~~vp~~W-sGriWaRTgC~~~~~g~~~C~TGDCgg~l~C~g 79 (219)
T cd09218 1 TFTIYNKCPFTVWPGILGNAGHPQLGGGGFELAPGQSRTIDAPSGW-SGRFWGRTGCSFDSSGKGSCATGDCGGGLECNG 79 (219)
T ss_pred CEEEEECCCCCccceecCCCCCCCCCCCCEEcCCCCeEEEeCCCCc-ceeeeeccCCCCCCCCccccccCCCCCeeecCC
Confidence 599999999999999975 47999999999999999999 799999999999999999999999999999998
Q ss_pred -CCCCCccceeeeeccCCCCcceeccccCCcCCceeEeecCC--CccCCccCcccccCCCCCCCccCC------CccCCC
Q 027281 98 -YGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSP--SCNRVIKCTANILGECPNELKVPG------GCNGPC 168 (225)
Q Consensus 98 -~g~~paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g--~C~~~~~C~~dl~~~CP~~l~~~~------gC~s~C 168 (225)
.|+||+|||||||++.+++|||||||||||||||+|+|+++ .| +.++|.+|||+.||.||++++ ||+|||
T Consensus 80 ~~g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~din~~CP~~L~v~~~~g~vv~C~SaC 158 (219)
T cd09218 80 AGGAPPATLAEFTLGGSGGQDFYDVSLVDGYNLPVSITPQGGSGGC-RTAGCVADLNAVCPAELQVKNSGGRVVACKSAC 158 (219)
T ss_pred CCCCCCceeEEEEeccCCCCcceeeeeeccccCCEEEEecCCCCCC-CCCcccCcccccCCHHHeeccCCCcEeeecCHH
Confidence 45899999999999877899999999999999999999763 69 899999999999999999862 799999
Q ss_pred CcCCCCccccCCC-----CCCCcchhHHHhhhCCCCccCCCCCCCCceeeCCCCceEEEec
Q 027281 169 PVFKTDEYCCNSG-----NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFC 224 (225)
Q Consensus 169 ~~~~~~~~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~VtFC 224 (225)
++|++|||||+|+ +|+|+.||++||++||+||+|||||++++|+|+++++|+||||
T Consensus 159 ~~f~~~~~CC~g~~~~p~~C~pt~ys~~FK~~CP~Aysya~Dd~~s~~tC~~~~~Y~I~FC 219 (219)
T cd09218 159 LAFNTDEYCCRGAYGTPETCKPTTYSRLFKNACPQAYSYAYDDPTSTFTCSSGANYVITFC 219 (219)
T ss_pred HhhCCccceecCCCCCCCcCCCcchhHHHHhhCccccccCCCCCCcceEcCCCCCEEEEeC
Confidence 9999999999986 7999999999999999999999999999999998899999998
No 2
>smart00205 THN Thaumatin family. The thaumatin family gathers proteins related to plant pathogenesis. The thaumatin family includes very basic members with extracellular and vacuolar localization. Thaumatin itsel is a potent sweet-tasting protein. Several members of this family display significant in vitro activity of inhibiting hyphal growth or spore germination of various fungi probably by a membrane permeabilizing mechanism.
Probab=100.00 E-value=3.3e-78 Score=522.70 Aligned_cols=198 Identities=58% Similarity=1.237 Sum_probs=187.4
Q ss_pred EEEEeCCCCceeeeeeC-------CCceeecCCCeEEEEcCCCCcceeeeeecccccCCCCCcccccCCCCCceeecCC-
Q 027281 27 FDITNNCPDTVWAAAVP-------GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQGY- 98 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgCs~~~~g~~~C~TGdCgg~~~C~~~- 98 (225)
|||+|||+||||||+++ ++||+|++|+++++.+|++|++|||||||+|++|++|+++|+||||+|.++|++.
T Consensus 1 fti~N~C~~tVWp~~~~~g~~~l~~gGf~L~~g~s~~~~~p~~w~sGriW~RtgC~~d~~G~~~C~TGdCgG~l~C~g~g 80 (218)
T smart00205 1 FEFVNNCPYTVWAAALPSGKPQLSGGGFELNSGASWQLDAPPGTKMGRIWARTGCNFDASGRGRCATGDCGGVLQCNGWG 80 (218)
T ss_pred CEEEcCCCCceeceecCCCCcccCCCcEecCCCCeEEEECCCCCccceEecccCCCcCCCCccccccCCCCCeeecCCCC
Confidence 79999999999999975 3799999999999999999967999999999999999999999999999999984
Q ss_pred CCCCccceeeeeccCCCCcceeccccCCcCCceeEeecC--CCccCCccCcccccCCCCCCCccC-----CCccCCCCcC
Q 027281 99 GAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVS--PSCNRVIKCTANILGECPNELKVP-----GGCNGPCPVF 171 (225)
Q Consensus 99 g~~paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~--g~C~~~~~C~~dl~~~CP~~l~~~-----~gC~s~C~~~ 171 (225)
++||+|||||+|++.+++|||||||||||||||+|.|++ +.| +..+|.+|||..||.||+++ .||+|+|.+|
T Consensus 81 g~pP~TlaEftl~~~~~~d~YdvSlVdGfNlP~~i~P~~~~~~C-~~~~C~~d~~~~CP~~L~v~~~g~vv~C~SaC~~f 159 (218)
T smart00205 81 GRPPATLAEFALNQFGGLDFYDVSLVDGFNIPMSFTPTGGSGDC-KGAGCTADLNAQCPAELQVPGGGSVVACNSACTVF 159 (218)
T ss_pred CCCCcceeEEEecCCCCcceeeeEeeccccCCEEEEecCCCCCc-CCCcCCCcccccCCHHHccccCCcccccccHhhcc
Confidence 599999999999987789999999999999999999975 359 89999999999999999986 3799999999
Q ss_pred CCCccccCCC-----CCCCcchhHHHhhhCCCCccCCCCCCCCceeeCCCCceEEEecC
Q 027281 172 KTDEYCCNSG-----NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 225 (225)
Q Consensus 172 ~~~~~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~VtFCP 225 (225)
++|||||+|+ +|+|+.||++||++||+||+||+||++++|+|+++++|+|+|||
T Consensus 160 ~~~~yCC~g~~~~~~~C~pt~ys~~FK~~CP~Aysya~Dd~~st~tC~~~~~y~V~FCp 218 (218)
T smart00205 160 GTDQYCCTGGQNNPETCPPTNYSRIFKNACPDAYSYAYDDPTSTFTCTGGTNYKVTFCP 218 (218)
T ss_pred CCCcceecCCCCCCCCCCCcchhhHHhhhCCccccCccCCCCcceEccCCCCEEEEeCC
Confidence 9999999996 79999999999999999999999999999999998999999998
No 3
>cd09219 TLP-F thaumatin-like proteins: basidiomycete homologs. This subfamily is represented by Lentinula edodes TLG1, a thaumatin-like protein (TLP), as well as, other basidiomycete homologs. In general, TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. TLG1 TLP is involved in lentinan degradation and fruiting body senescence. TLG1 expressed in Escherichia coli and Aspergillus oryzae exhibited beta-1,3-glucanase activity and demonstrated lentinan degrading activity. TLG1 is proposed to be involved in lentinan and cell wall degradation during senescence following harvest and spore diffusion. TLPs are three-domain, crescent-fold structures with either an electronegative, electropositive, or neutral cleft occurring between domains I and II. TLG1 from Lentinula edodes contains the required acidic amino acids conserved in the appropriate positions to possess an electronegative cleft. TLPs within this subfamily contain 13 conserve
Probab=100.00 E-value=5e-78 Score=523.54 Aligned_cols=196 Identities=35% Similarity=0.764 Sum_probs=182.5
Q ss_pred EEEEeCCCCceeeeeeC-----------CCceeecCCCeEEEEcCCCCcceeeeeecccccC-CCCCcccccCCCCCcee
Q 027281 27 FDITNNCPDTVWAAAVP-----------GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFD-ASGKGKCETGDCNGLLE 94 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-----------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgCs~~-~~g~~~C~TGdCgg~~~ 94 (225)
|||+|||+||||||+++ .+||+|+||++++|.+|++|++|||||||||++| ..|+++|+||||||.++
T Consensus 1 fti~N~C~~TVWPgi~~~~g~~~~~~~~~gGf~L~pg~s~~i~vp~~w~~GRiWgRTgC~~d~~~G~~~C~TGdCgg~l~ 80 (229)
T cd09219 1 FTVKNSCSSTIWPAMFTGGNFIDAVPDQATGWEAAAGGQVEFTVPDNWTAGRIWARTGCDFSDNPGPFSCLTGGCGGGLT 80 (229)
T ss_pred CEEEeCCCCCccceecCCCCCccccccCCCCEecCCCCeEEEECCCCCcccceeccCCCCCCCCCCCCCcccCCCCceee
Confidence 79999999999999963 3799999999999999999955999999999999 46999999999999999
Q ss_pred ecCCCCCCccceeeeeccCCCCcceeccccCCcCCceeEeecCCCccCCccCcccccCCCCCCCccC-------CCccCC
Q 027281 95 CQGYGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVP-------GGCNGP 167 (225)
Q Consensus 95 C~~~g~~paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~-------~gC~s~ 167 (225)
|++.|.||+|||||+|++. ++|||||||||||||||+|.|.. .| +.++|.+|||..||.||+++ .||+|+
T Consensus 81 C~~~g~pP~TlaEftL~~~-~~D~YdVSlVDGfNlP~~i~P~~-~C-~~~~C~~dln~~CP~~L~v~~~~~g~~vaC~Sa 157 (229)
T cd09219 81 CENSDQPPASLAEFTLIGG-KEDNYDISLVDGFNIPLNITNNI-TC-PQPQCQVDLNVLCPALLRGPLDQKGVNLGCISP 157 (229)
T ss_pred cCCCCCCCcceeeEEecCC-CCceeEEEEecccccceEeccCC-CC-CCCcccCCCcccCCHHHccccCCCCccceecCH
Confidence 9988899999999999976 88999999999999999999954 79 89999999999999999985 379999
Q ss_pred CCc-CCC--CccccCCC-----CCCC--cchhHHHhhhCCCCccCCCCCCC--CceeeCC--CCceEEEecC
Q 027281 168 CPV-FKT--DEYCCNSG-----NCGP--TGFSKFFKDRCPDVYSYPKDDAT--STFTCPS--GTDYKVVFCP 225 (225)
Q Consensus 168 C~~-~~~--~~~CC~g~-----~C~p--t~ys~~fK~~CP~AYsya~Dd~t--stftC~~--~~~y~VtFCP 225 (225)
|++ |++ |||||+|+ +|+| ++||++||++||+||||||||++ ++|+|++ +++|+|+|||
T Consensus 158 C~a~~~~~~~~yCC~g~~~~p~~C~p~~t~ys~~FK~~CP~AYSYa~Dd~ssts~ftC~~~~~~~Y~ItFCP 229 (229)
T cd09219 158 CNRDKNHDDSPSCCTGSHNKPETCPQSGVGNYAYFKDNCPTAYAYAYDEKSHTALWTCGDSKSADYTVTFCP 229 (229)
T ss_pred hhhhccCCCCcccccCCCCCcCCCCCCcccHhHHHHhhCcccccccccCccccccEEeCCCCCCCEEEEeCC
Confidence 999 655 99999986 7999 88999999999999999999999 6799998 7899999998
No 4
>PF00314 Thaumatin: Thaumatin family; InterPro: IPR001938 Thaumatin [] is an intensely sweet-tasting protein, 100 000 times sweeter than sucrose on a molar basis [] found in berries from Thaumatococcus daniellii, a tropical flowering plant known as Katemfe, it is induced by attack by viroids, which are single-stranded unencapsulated RNA molecules that do not code for protein. Thaumatin consists of about 200 residues and contains 8 disulphide bonds. Like other PR proteins, thaumatin is predicted to have a mainly beta structure, with a high content of beta-turns and little helix []. Several stress-induced proteins of plants have been found to be related to thaumatins: A maize alpha-amylase/trypsin inhibitor Two tobacco pathogenesis-related proteins: PR-R major and minor forms,which are induced after infection with viruses Salt-induced protein NP24 from tomato Osmotin, a salt-induced protein from tobacco[] Osmotin-like proteins OSML13, OSML15 and OSML81 from potato [] P21, a leaf protein from soybean PWIR2, a leaf protein from wheat [] Zeamatin, a maize antifunal protein [] This protein is also referred to as pathogenesis-related group 5 (PR5), as many thaumatin-like proteins accumulate in plants in response to infection by a pathogen and possess antifungal activity []. The proteins are involved in systematically acquired resistance and stress response in plants, although their precise role is unknown [].; PDB: 3G7M_A 2I0W_A 1AUN_A 1Z3Q_A 1KWN_A 2OQN_A 1THW_A 1LY0_A 2D8O_A 1LR3_A ....
Probab=100.00 E-value=1.7e-74 Score=498.83 Aligned_cols=193 Identities=55% Similarity=1.138 Sum_probs=160.1
Q ss_pred eCCCCceeeeeeCC--------CceeecCCCeEEEEcCCCCcceeeeeecccccCCCCCcccccCCCCCceeecC-CCCC
Q 027281 31 NNCPDTVWAAAVPG--------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQG-YGAA 101 (225)
Q Consensus 31 N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~~p~~w~sGriW~RtgCs~~~~g~~~C~TGdCgg~~~C~~-~g~~ 101 (225)
|||+|||||++++. +|++|++|+++++.+|++| +|||||||||++|+.|+++|+||||+|.++|++ .+.+
T Consensus 1 N~C~~tvWp~~~~~~~~~~~~~~g~~l~~g~s~~~~~p~~W-sGriW~RTgC~~~~~g~~~C~TGdCgg~~~C~~~~~~~ 79 (213)
T PF00314_consen 1 NNCPFTVWPAILPNAGSPPLSTGGFRLDPGQSWSLTVPAGW-SGRIWARTGCSFDGGGRGSCATGDCGGRLECNGAGGSP 79 (213)
T ss_dssp E-SSS-EEEEEETTTSSSEEEEEEEEE-TTEEEEEE--TTE-SEEEEEEEEEEEETTSBEEEEES-STTBSSSSS----S
T ss_pred CcCCCCeeeeecCCCCCCcCCCCCEEcCCCCeEEEecCccc-cceeeecCCCcCCCCCCcccccCCCCcccccccccCcc
Confidence 99999999999862 6899999999999999999 899999999999999999999999999999998 5699
Q ss_pred CccceeeeeccCCCCcceeccccCCcCCceeEeecC-CCccCCccCcccccCCCCCCCccC-----CCccCCCCcCCCCc
Q 027281 102 PNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVS-PSCNRVIKCTANILGECPNELKVP-----GGCNGPCPVFKTDE 175 (225)
Q Consensus 102 paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~-g~C~~~~~C~~dl~~~CP~~l~~~-----~gC~s~C~~~~~~~ 175 (225)
|+|||||+|++.+++|||||||||||||||+|+|.+ ..| +..+|.+||+..||.||+++ .+|+|+|.+|+++|
T Consensus 80 P~TlaEftl~~~~~~d~YDVSlVdGfNlP~~i~p~~~~~C-~~~~C~~di~~~CP~~l~v~~~~~vv~C~SaC~~~~~~~ 158 (213)
T PF00314_consen 80 PATLAEFTLNGSNGQDFYDVSLVDGFNLPMSISPSGGSNC-RSPGCPADINSWCPSELQVKNSDGVVGCKSACDAFNTDE 158 (213)
T ss_dssp S--EEEEEEEETTTEEEEEEESTT-BSS-EEEEESSSSSS-SSEEE-S-HHHHE-CCCEEETTSSTTEE--HHHHH-SHH
T ss_pred cceeEEEEeccCCCcceEEEEeeeeecCChhhccCCCCcc-ccccCccccccccchhheeeccCceeeecccceeccCCc
Confidence 999999999877899999999999999999999994 689 99999999999999999984 37999999999999
Q ss_pred cccCCC-----CCCCcchhHHHhhhCCCCccCCCCCCCCceeeCCCCceEEEecC
Q 027281 176 YCCNSG-----NCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 225 (225)
Q Consensus 176 ~CC~g~-----~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~VtFCP 225 (225)
|||+|+ +|++++|+++||++||+||+|||||++|+|+|+++++|+|||||
T Consensus 159 ~CC~g~~~~~~~C~~~~ys~~fK~~CP~AYsya~DD~~s~ftC~~~~~y~ItFCP 213 (213)
T PF00314_consen 159 YCCRGAYNTPDTCPPTNYSQFFKKACPDAYSYAYDDQTSTFTCPAGTNYTITFCP 213 (213)
T ss_dssp HHTTCCS-TTSCS---HHHHHHHHH-TTSBSSTTSHTTT-EEEETT-EEEEEEST
T ss_pred cccccccCCCcccccchhhhhhhhhCcccccccccCCCcceECCCCCCEEEEeCc
Confidence 999986 89999999999999999999999999999999998999999999
No 5
>cd09215 Thaumatin-like the sweet-tasting protein, thaumatin, and thaumatin-like proteins involved in host defense. This family is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii and thaumatin-like proteins (TLPs) involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs included in this family are such proteins as zeamatin, found in high concentrations in cereal seeds; osmotin, a salt-induced protein in osmotically stressed plants; and PpAZ44, a propylene-induced TLP in abscission of young fruit. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun
Probab=100.00 E-value=6.2e-60 Score=390.55 Aligned_cols=149 Identities=50% Similarity=0.998 Sum_probs=138.4
Q ss_pred EEEEeCCCCceeeeeeC-------CCceeecCCCeEEEEcCCCCcceeeeeecccccCC-CCCcccccCCCCCceeecCC
Q 027281 27 FDITNNCPDTVWAAAVP-------GGGRQLDKGQTWTITAAPGTKAARIWARTKCQFDA-SGKGKCETGDCNGLLECQGY 98 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-------~~g~~L~~G~s~s~~~p~~w~sGriW~RtgCs~~~-~g~~~C~TGdCgg~~~C~~~ 98 (225)
|||+|||+||||||+++ .+||+|+||+++++.+|++| +|||||||+|++|+ .|++.|+||||+|.++|++.
T Consensus 1 ~ti~N~C~~tVWPg~~~~~g~~~~~gGf~L~~g~s~~~~~p~~w-sGriWgRTgC~~~~~~g~~~C~TGdCgg~l~C~g~ 79 (157)
T cd09215 1 FTITNRCPYTIWPAIFTQVGKGPYTGGFELNPGETKSFDVSAGW-QGRIWARTNCSFNANSGGNACLTGDCNGGLNCQGT 79 (157)
T ss_pred CEEEcCCCCCeeceecCCCCCCCCCCCEecCCCCeeEEecCCCC-eEeeecccccccCCCCCCCCcccCCCCceeecCCC
Confidence 79999999999999975 47999999999999999999 79999999999998 79999999999999999997
Q ss_pred CCCCccceeeeeccCCCCcceeccccCCcCCceeEeecCCCccCCccCcccccCCCCCCCccCCCccCCCCcCCCCcccc
Q 027281 99 GAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCC 178 (225)
Q Consensus 99 g~~paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~s~C~~~~~~~~CC 178 (225)
|.||+|||||+|++.+++|||||||||||||||+|+|+++.| +..+|.
T Consensus 80 g~pp~TlaEftl~~~~~~d~YdVSlVdG~NlP~~i~P~~~~C-~~~~C~------------------------------- 127 (157)
T cd09215 80 GGPPATLAEFTLSGGGGLDYYDISLVDGYNLPMSITPQPGEC-PTPICA------------------------------- 127 (157)
T ss_pred CCCCcceEEEEecCCCCcceeEEEeeccccCCEEEecCCCCC-CCCccc-------------------------------
Confidence 899999999999987789999999999999999999976567 655555
Q ss_pred CCCCCCCcchhHHHhhhCCCCccCCCCCCCCceeeCCCCceEEEec
Q 027281 179 NSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFC 224 (225)
Q Consensus 179 ~g~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~VtFC 224 (225)
+||+||+|||||++++|+|+++++|+|+||
T Consensus 128 ----------------~Cp~Aysya~Dd~~s~~tC~~~~~y~v~FC 157 (157)
T cd09215 128 ----------------ACPDAYSYAYDDQTSTFTCPGGAGYEVVFC 157 (157)
T ss_pred ----------------cCccccccCCCCCccceECCCCCCEEEEeC
Confidence 189999999999999999998899999999
No 6
>cd09217 TLP-P thaumatin and allergenic/antifungal thaumatin-like proteins: plant homologs. This subfamily is represented by the sweet-tasting protein thaumatin from the African berry Thaumatococcus daniellii, allergenic/antifungal Thaumatin-like proteins (TLPs), and related plant proteins. TLPs are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. TLPs in this subfamily include such proteins as zeamatin, found in high concentrations in cereal seeds, and osmotin, a salt-induced protein in osmotically stressed plants. Several members of the plant TLP family have been reported as food allergens from fruits (i.e., cherry, Pru av 2; bell pepper, Cap a1; tomatoes, Lyc e NP24) and pollen allergens from conifers (i.e., mountain cedar, Jun a 3; Arizona cypress, Cup a3
Probab=100.00 E-value=4.1e-55 Score=360.12 Aligned_cols=149 Identities=62% Similarity=1.264 Sum_probs=137.7
Q ss_pred EEEEeCCCCceeeeeeC-CCceeecCCCeEEEEcCCC-CcceeeeeecccccCCCCCcccccCCCCCceeecCCCCCCcc
Q 027281 27 FDITNNCPDTVWAAAVP-GGGRQLDKGQTWTITAAPG-TKAARIWARTKCQFDASGKGKCETGDCNGLLECQGYGAAPNT 104 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p-~~g~~L~~G~s~s~~~p~~-w~sGriW~RtgCs~~~~g~~~C~TGdCgg~~~C~~~g~~paT 104 (225)
|+|+|||+||||||++| ++||+|+||+++++.+|++ | +|||||||+|++|++|+++|+||||||+++|.+.|.||+|
T Consensus 1 ~~~~N~C~~tvWp~~~~~~gG~~L~~g~~~~~~~p~~~w-~griW~RTgC~~~~~g~~~C~TGdCgg~l~C~~~g~pp~T 79 (151)
T cd09217 1 FTITNNCGYTVWPAATPVGGGRQLNPGQSWTIDVPAGTA-GGRIWGRTGCSFDASGRGSCQTGDCGGVLSCTGSGKPPAT 79 (151)
T ss_pred CEEEeCCCCcccceEecCCCCEeCCCCCeEEEEcCCCCc-eEEEeeecCCCcCCCCCCcccccCCCCeeecCCCCCCCce
Confidence 78999999999999998 6899999999999999998 7 8999999999999999999999999999999987899999
Q ss_pred ceeeeeccCCCCcceeccccCCcCCceeEeecCCCccCCccCcccccCCCCCCCccCCCccCCCCcCCCCccccCCCCCC
Q 027281 105 LAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSPSCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDEYCCNSGNCG 184 (225)
Q Consensus 105 laEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g~C~~~~~C~~dl~~~CP~~l~~~~gC~s~C~~~~~~~~CC~g~~C~ 184 (225)
|+||+|+. +++||||||+||||||||+|.|+++.| +.++|..
T Consensus 80 l~E~tl~~-~~~d~YdISlVdG~NlP~~i~P~~~~C-~~~~C~~------------------------------------ 121 (151)
T cd09217 80 LAEYTLNQ-SGQDFYDISLVDGFNVPMDFSPTGGGC-HAIPCAA------------------------------------ 121 (151)
T ss_pred eEEEEecC-CCCccEEEEeecccccceEEecCCCCC-CCCcCCC------------------------------------
Confidence 99999986 678999999999999999999986568 6656653
Q ss_pred CcchhHHHhhhCCCCccCCCCCCCCceeeCCCCceEEEecC
Q 027281 185 PTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVFCP 225 (225)
Q Consensus 185 pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~VtFCP 225 (225)
+ ||+||+|++|| .++|+|+.+++|+|+|||
T Consensus 122 ---------d-C~~ay~~~~D~-~~~~~C~~~~~~~v~fCp 151 (151)
T cd09217 122 ---------N-CPDAYSYPKDP-TTTFTCPGGTNYRIVFCP 151 (151)
T ss_pred ---------C-CchHhcCCCCC-CceEeCCCCCCEEEEeCC
Confidence 1 89999999995 699999999999999998
No 7
>cd08961 GH64-TLP-SF glycoside hydrolase family 64 (beta-1,3-glucanases which produce specific pentasaccharide oligomers) and thaumatin-like proteins. This superfamily includes glycoside hydrolases of family 64 (GH64), these are mostly bacterial beta-1,3-glucanases which cleave long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers and are implicated in fungal cell wall degradation. Also included in this superfamily are thaumatin, the sweet-tasting protein from the African berry Thaumatococcus daniellii, and thaumatin-like proteins (TLPs) which are involved in host defense and a wide range of developmental processes in fungi, plants, and animals. Like GH64s, some TLPs also hydrolyze the beta-1,3-glucans of the type commonly found in fungal walls. Plant TLPs are classified as pathogenesis-related (PR) protein family 5 (PR5), their expression is induced by environmental stresses such as pathogen/pest attack, drought and cold. Several members of the plant TLP
Probab=100.00 E-value=1.2e-49 Score=328.22 Aligned_cols=142 Identities=42% Similarity=0.692 Sum_probs=127.5
Q ss_pred EEEEeCCCCceeeeeeCC--------CceeecCCCeEEEEcCCCCcceeeeeecccccCCCCCcccccCCCCCceeecC-
Q 027281 27 FDITNNCPDTVWAAAVPG--------GGRQLDKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQG- 97 (225)
Q Consensus 27 ~ti~N~C~~tVwp~~~p~--------~g~~L~~G~s~s~~~p~~w~sGriW~RtgCs~~~~g~~~C~TGdCgg~~~C~~- 97 (225)
|||+|||+|||||++++. +|++|+||+++++.+|++| +||||+||+|+++..|++.|+||||++ +.|.+
T Consensus 1 ~ti~NnC~~tVWp~i~~~~~~~~~~~gg~~L~pG~s~si~vP~~w-sGRIW~RtgC~~~~~g~g~C~TGdcgg-~~c~g~ 78 (153)
T cd08961 1 LTITNNCGYQVWIYNLGTELSSAPDASGPGLAPGRSTTIQIPKGF-SGRIWFRTGCSMDFSGTTGCLTQDPGV-VNPTDP 78 (153)
T ss_pred CEEEeCCCCcCcceECCCCCCCCccCcccccCCCCcEEEEecCCc-eEEEEEecCCcccCCCCccccccCCCC-cccCCC
Confidence 689999999999999752 7999999999999999999 799999999999998999999999998 67776
Q ss_pred CCCCCccceeeeeccCCCCcceeccccCCcCCceeEeecCC--CccCCccCcccccCCCCCCCccCCCccCCCCcCCCCc
Q 027281 98 YGAAPNTLAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVSP--SCNRVIKCTANILGECPNELKVPGGCNGPCPVFKTDE 175 (225)
Q Consensus 98 ~g~~paTlaEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~g--~C~~~~~C~~dl~~~CP~~l~~~~gC~s~C~~~~~~~ 175 (225)
.+.||+||+||||++.+++|||||||||||||||+|+|..+ .|
T Consensus 79 ~g~pp~TlaEfTl~~~~~~dfydISlVDGfNlP~~i~p~~~~g~C----------------------------------- 123 (153)
T cd08961 79 NRDPPFTLAEFTLNDFNSGDFIDSSLVDGFNAPMTVGPRRGDGTC----------------------------------- 123 (153)
T ss_pred CCCCCcceEEEEecCCCCcceEEEEeecccCCCEEEEeccCCCCc-----------------------------------
Confidence 56999999999999767899999999999999999999642 23
Q ss_pred cccCCCCCCCcchhHHHhhhCCCCccCCCCCCCCceeeCCCCceEEEe
Q 027281 176 YCCNSGNCGPTGFSKFFKDRCPDVYSYPKDDATSTFTCPSGTDYKVVF 223 (225)
Q Consensus 176 ~CC~g~~C~pt~ys~~fK~~CP~AYsya~Dd~tstftC~~~~~y~VtF 223 (225)
++. . |||+|||||+.++|+|+.+.+|.|+|
T Consensus 124 --------~~~--------~--~~~~~~~~~~~~~~~c~~~~~~~~~~ 153 (153)
T cd08961 124 --------LST--------G--DAYSYAFDDHESTFTCGGGRNYSLTF 153 (153)
T ss_pred --------ccc--------c--cccccCCCCccceEEcCCCCceEEeC
Confidence 111 1 89999999988999999999999998
No 8
>PF04681 Bys1: Blastomyces yeast-phase-specific protein; InterPro: IPR006771 The pathogenic dimorphic fungal organism Blastomyces dermatitidis exists as a budding yeast at 37 degrees C and as a mycelium at 25 degrees C. Bys1 is expressed specifically in the high temperature, unicellular yeast morphology and codes for a protein of 18.6 kDa that contains multiple putative phosphorylation sites, a hydrophobic N terminus, and two 34-amino-acid domains with similarly spaced nine-amino-acid degenerative repeating motifs []. The molecular function of this protein is not known.
Probab=98.48 E-value=4.1e-06 Score=69.55 Aligned_cols=47 Identities=26% Similarity=0.429 Sum_probs=36.4
Q ss_pred CCCccceeeeeccCCCCcceeccccCCcCCc---eeEeecCCCccCCccCc
Q 027281 100 AAPNTLAEYALKQFNDMDFIDMSNIDGFNVP---MEFSSVSPSCNRVIKCT 147 (225)
Q Consensus 100 ~~paTlaEftl~~~~~~d~YDvSlVdG~NlP---~~i~p~~g~C~~~~~C~ 147 (225)
..|.|..||+|...+.+.|||+|.|.|+..- +.|.|.+..| +.+.|.
T Consensus 71 ~~pqt~FaYtL~~d~~~VwYDLSdvfGdPF~G~~v~v~ps~~~C-p~I~Wp 120 (155)
T PF04681_consen 71 GSPQTIFAYTLVDDNNQVWYDLSDVFGDPFAGHKVTVNPSDPSC-PSIVWP 120 (155)
T ss_pred CCceeEEEEEecCCCceEEEECccccCCCcCCCEEEEecCCCCC-CceECC
Confidence 3578999999987567899999999997553 7888877667 544443
No 9
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=91.51 E-value=0.39 Score=45.25 Aligned_cols=77 Identities=18% Similarity=0.223 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCCCcceeeeeecccccCCCCCcccccCCCC-CceeecCC--CCCCc----cceeeeeccCCCCcceeccc
Q 027281 51 KGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCN-GLLECQGY--GAAPN----TLAEYALKQFNDMDFIDMSN 123 (225)
Q Consensus 51 ~G~s~s~~~p~~w~sGriW~RtgCs~~~~g~~~C~TGdCg-g~~~C~~~--g~~pa----TlaEftl~~~~~~d~YDvSl 123 (225)
+|++.++++|.-+ +||||=..+=.. .|. ...+ | +..+=... .-|-. ..+|||++. .+-|-++|.
T Consensus 62 ~G~~~titiP~i~-sgRIyfS~g~~L----~F~-~~~~-g~glv~Ps~~NpsDpN~~~~~~f~EfT~n~--~~l~~N~S~ 132 (369)
T cd09220 62 PGSTTTVTIPILA-GGRIWFSVDDKL----TFL-LNPG-GPALVEPSVTNPSDPNYNKNWGFCEFTYNS--GQLYANISY 132 (369)
T ss_pred CCCceeEEccccc-ceEEEEEcCCeE----EEE-ecCC-CccccCCCcCCCCCCCccceEEEEEEEecC--CceEecccc
Confidence 5888999999977 899995443110 111 1111 2 11110000 01111 337999984 567899999
Q ss_pred cCCcCCceeEeec
Q 027281 124 IDGFNVPMEFSSV 136 (225)
Q Consensus 124 VdG~NlP~~i~p~ 136 (225)
||-|.+||.|+-.
T Consensus 133 VD~~~~P~~l~l~ 145 (369)
T cd09220 133 VDFVGLPLGLSLT 145 (369)
T ss_pred eeeeccCeEEEEE
Confidence 9999999988754
No 10
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=89.69 E-value=0.45 Score=44.62 Aligned_cols=77 Identities=18% Similarity=0.263 Sum_probs=46.2
Q ss_pred cCCCeEEEEcCCCCcceeeeeecccccCCCCCcccccCCCCCceeecC-C--CCCCc----cceeeeeccCCCCcceecc
Q 027281 50 DKGQTWTITAAPGTKAARIWARTKCQFDASGKGKCETGDCNGLLECQG-Y--GAAPN----TLAEYALKQFNDMDFIDMS 122 (225)
Q Consensus 50 ~~G~s~s~~~p~~w~sGriW~RtgCs~~~~g~~~C~TGdCgg~~~C~~-~--g~~pa----TlaEftl~~~~~~d~YDvS 122 (225)
.+|++.++.+|. + +||||=..+=.. .|.-.. +..+.=.. . .-|-. ..+|||++. .+-|-++|
T Consensus 60 ~~G~~~tvtiP~-~-sgRiyfS~g~~L----~F~~~~---~~~lv~Ps~~NpsDpN~~~~~~f~EfT~n~--~gl~~N~T 128 (353)
T cd09216 60 SPGDTTTVLPPR-M-SGRIYFSLGSKL----RFKVVT---NPALVQPAGWNPSDPNFNILHDWVEFTFND--AGLFCNTT 128 (353)
T ss_pred CCCCceEEcccc-c-CcEEEEEcCCee----EEEecC---CCcccCCCCCCCCCCCccceEEEEEEEecC--CceEeccc
Confidence 367888899998 7 899995443110 121111 11111111 0 01111 337999984 45689999
Q ss_pred ccCCcCCceeEeecC
Q 027281 123 NIDGFNVPMEFSSVS 137 (225)
Q Consensus 123 lVdG~NlP~~i~p~~ 137 (225)
.||-|.+||.|+-.+
T Consensus 129 ~VD~~~~P~~l~l~~ 143 (353)
T cd09216 129 QVDMFSAPLAIGLRG 143 (353)
T ss_pred ceeeeccceEEEEec
Confidence 999999999998653
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=74.48 E-value=2.5 Score=32.38 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=13.0
Q ss_pred CcccchhHHHHHHHH-HHHh-hhccceEE
Q 027281 1 MKFVKALPISSALLI-IISI-TLTHAAKF 27 (225)
Q Consensus 1 m~~~~~~~~~~~~~~-~~~~-~~~~~~t~ 27 (225)
|++ |.++|+.|||+ +||+ +.+.++.+
T Consensus 1 MaS-K~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MAS-KAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred Cch-hHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 774 66555555544 3333 33444444
No 12
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=68.35 E-value=4.5 Score=37.46 Aligned_cols=31 Identities=13% Similarity=0.414 Sum_probs=26.5
Q ss_pred ceeeeeccCCCCcceeccccCCcCCceeEeecC
Q 027281 105 LAEYALKQFNDMDFIDMSNIDGFNVPMEFSSVS 137 (225)
Q Consensus 105 laEftl~~~~~~d~YDvSlVdG~NlP~~i~p~~ 137 (225)
.+|||++. .+-|-++|.||-|.+||.|+-.+
T Consensus 125 f~EFT~n~--~~l~~N~T~VD~~~lPl~l~l~~ 155 (319)
T cd09214 125 FIEFTYNA--TGLWGNTTRVDAFGIPLTLRLIG 155 (319)
T ss_pred EEEEEecC--CceEecccceeeeccCeEEEEEc
Confidence 37999983 67899999999999999998664
No 13
>cd09214 GH64-like glycosyl hydrolase 64 family. This family is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. Also included in this family is GluB , the beta-1,3-g
Probab=67.17 E-value=3.7 Score=38.03 Aligned_cols=38 Identities=21% Similarity=0.431 Sum_probs=26.1
Q ss_pred CcchhHHHhhhCC--CCccCCCCCCC---CceeeCCCCceEEE
Q 027281 185 PTGFSKFFKDRCP--DVYSYPKDDAT---STFTCPSGTDYKVV 222 (225)
Q Consensus 185 pt~ys~~fK~~CP--~AYsya~Dd~t---stftC~~~~~y~Vt 222 (225)
.+.|++++++.-. .||.|||||-. ++..-.....++|+
T Consensus 275 tN~Yar~vH~~~idg~aYaF~YDDV~~~s~~v~~~~P~~~~it 317 (319)
T cd09214 275 ANYYAQFWHAHSINGLAYGFPYDDVNGQSSTLSTTDPTHATIT 317 (319)
T ss_pred chHHHHHHHHhccCCCeeecccccccccccccccCCCceEEEE
Confidence 3579999999997 79999999853 33333333445554
No 14
>cd09220 GH64-GluB-like glycoside hydrolase family 64: beta-1,3-glucanase B (GluB)-like. This subfamily is represented by GluB, beta-1,3-glucanase B , from Lysobacter enzymogenes Strain N4-7 and related bacterial and ascomycete proteins. GluB is a member of the glycoside hydrolase family 64 (GH64) involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. Among bacteria, many beta-1,3-glucanases are implicated in fungal cell wall degradation. GluB possesses the conserved Glu and Asp residues required to cleave substrate beta-1,3-glucans. Recombinant GluB demonstrated higher relative activity toward the branched-chain beta-1,3 glucan substrate zymosan A than toward linear beta-1,3 glucan substrates. Based on the structure of laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis, which belongs to the same family as GluB but to a different subfamily, this cd is a two-domain model. Sometimes these two domains a
Probab=56.45 E-value=11 Score=35.68 Aligned_cols=24 Identities=25% Similarity=0.605 Sum_probs=20.8
Q ss_pred CCcchhHHHhhhCC--CCccCCCCCC
Q 027281 184 GPTGFSKFFKDRCP--DVYSYPKDDA 207 (225)
Q Consensus 184 ~pt~ys~~fK~~CP--~AYsya~Dd~ 207 (225)
..+.|++++++.-+ .+|.|||||-
T Consensus 319 ~tNhYar~vH~~~~dg~gYaFpYDDV 344 (369)
T cd09220 319 PTNHYSRIVHENNPDGRGYAFPYDDV 344 (369)
T ss_pred CchHHHHHHHHhccCCCeeccccccc
Confidence 34689999999988 7899999996
No 15
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=55.77 E-value=27 Score=27.26 Aligned_cols=52 Identities=13% Similarity=0.276 Sum_probs=37.3
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
......++.|+|.-.-+|++|.- | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 94 (101)
T TIGR00192 17 EGRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDIPSGTAVRFEPGEEKSVELVAIGG-NRRIYGFN 94 (101)
T ss_pred CCCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 34567899999999999999951 2 345677899999997643 21 35666543
No 16
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=55.10 E-value=28 Score=27.13 Aligned_cols=53 Identities=13% Similarity=0.250 Sum_probs=37.3
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCCCCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAPGTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~~w~sGriW~Rt 72 (225)
......+++|+|.-.-+|++|.- | ++..+.+||+++++++-+-=-..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~~G~r~v~G~~ 94 (101)
T cd00407 17 AGREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDIPAGTAVRFEPGEEKEVELVPIGGKRRVYGFN 94 (101)
T ss_pred CCCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecccCCCeEEECCCCeEEEEEEEccCceEEEccC
Confidence 34567899999999999999951 2 34567789999999764311135666543
No 17
>cd09216 GH64-LPHase-like glycoside hydrolase family 64: laminaripentaose-producing, beta-1,3-glucanase (LPHase)-like. This subfamily is represented by the laminaripentaose-producing, beta-1,3-glucanase (LPHase) of Streptomyces matensis and related bacterial and ascomycete proteins. LPHase is a member of glycoside hydrolase family 64 (GH64), it is an inverting enzyme involved in the cleavage of long-chain polysaccharide beta-1,3-glucans, into specific pentasaccharide oligomers. LPHase is a two-domain crescent fold structure: one domain is composed of 10 beta-strands, eight coming from the N-terminus of the protein and two from the C-terminal region, and the protein has a second inserted domain; this cd includes both domains. This protein has an electronegative, substrate-binding cleft, and conserved Glu and Asp residues involved in the cleavage of the beta-1,3-glucan, laminarin, a plant and fungal cell wall component. Among bacteria, many beta-1,3-glucanases are implicated in fungal cel
Probab=53.39 E-value=12 Score=35.15 Aligned_cols=23 Identities=17% Similarity=0.455 Sum_probs=19.9
Q ss_pred CcchhHHHhhhCC--CCccCCCCCC
Q 027281 185 PTGFSKFFKDRCP--DVYSYPKDDA 207 (225)
Q Consensus 185 pt~ys~~fK~~CP--~AYsya~Dd~ 207 (225)
.+.|++++++.=. .||.|||||-
T Consensus 309 tNhYar~vH~~~~dgk~YaF~YDDV 333 (353)
T cd09216 309 TNHYAKVVHEAMADGKAYGFAFDDV 333 (353)
T ss_pred chHHHHHHHHhccCCCeeecCcccc
Confidence 3679999999887 6899999995
No 18
>PRK13202 ureB urease subunit beta; Reviewed
Probab=50.88 E-value=44 Score=26.17 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=35.5
Q ss_pred cceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 23 HAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 23 ~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
...+++|+|.-.-+|++|.- | ++..+.+||+++++++-+ += ..+|+|-.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~~ 95 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVPLGG-RREVPGLT 95 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEEccC-CeEEEcCC
Confidence 56899999999999999951 2 345677899999997643 21 35666543
No 19
>PRK13203 ureB urease subunit beta; Reviewed
Probab=45.52 E-value=38 Score=26.47 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=36.5
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeee
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~R 71 (225)
..-...+++|+|.-.-+|++|.- | ++..+.+||+++++++-+ += ..+|+|-
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 93 (102)
T PRK13203 17 AGRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNIPAGTAVRFEPGQTREVELVPLAG-ARRVYGF 93 (102)
T ss_pred CCCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEcc
Confidence 34567899999999999999951 2 345677899999997643 21 3566654
No 20
>PRK13201 ureB urease subunit beta; Reviewed
Probab=42.92 E-value=52 Score=26.93 Aligned_cols=52 Identities=10% Similarity=0.222 Sum_probs=37.6
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
......+|.|+|.-.-+|++|.- | ++..+..||+++++.+-+ += ..+|+|-.
T Consensus 17 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~igG-~r~V~Gfn 94 (136)
T PRK13201 17 NHHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDIPAGAAVRFEPGDKKEVQLVEYAG-KRKIFGFR 94 (136)
T ss_pred CCCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 34567899999999999999951 2 345677899999997643 21 35676544
No 21
>PRK13204 ureB urease subunit beta; Reviewed
Probab=42.35 E-value=51 Score=27.61 Aligned_cols=52 Identities=12% Similarity=0.176 Sum_probs=38.0
Q ss_pred hhccceEEEEEeCCCCceeeee-------e-----------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAA-------V-----------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~-------~-----------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+-...+|+|+|.-.-+|++|. + | ++..+..||+++++.+-+ += ..+|+|-.
T Consensus 40 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfn 117 (159)
T PRK13204 40 QGRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDIPANTAVRFEPGDEKEVTLVPFAG-KRFIFGFN 117 (159)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEccC
Confidence 4556799999999999999995 1 2 345677899999997643 22 35777654
No 22
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=39.51 E-value=30 Score=22.08 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=7.5
Q ss_pred ccceEEEEEeCC
Q 027281 22 THAAKFDITNNC 33 (225)
Q Consensus 22 ~~~~t~ti~N~C 33 (225)
+..-++.|.-+|
T Consensus 21 ~~pG~ViING~C 32 (36)
T PF08194_consen 21 ATPGNVIINGKC 32 (36)
T ss_pred CCCCeEEECcee
Confidence 446677776665
No 23
>PRK13198 ureB urease subunit beta; Reviewed
Probab=38.68 E-value=64 Score=27.01 Aligned_cols=52 Identities=10% Similarity=0.186 Sum_probs=37.7
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+-...+|.|+|.-.-+|++|.- | ++..+..||+++++.+-+ += ..+|+|-.
T Consensus 45 ~gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdIPAGTAVRFEPG~~k~V~LV~~gG-~r~V~Gfn 122 (158)
T PRK13198 45 ENKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNISSTTAIRFEPGDETEVPLIPFGG-KQTLYGFN 122 (158)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCcccccCCCCeEeeCCCCeeEEEEEEccC-ceEEEccC
Confidence 34567899999999999999951 2 345677899999997643 21 35776644
No 24
>PRK13205 ureB urease subunit beta; Reviewed
Probab=37.36 E-value=70 Score=26.84 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=37.4
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+....+|+|+|.-.-+|.+|.- | ++..+..||+++++.+-+ += ..+|+|-.
T Consensus 17 ~GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdIPAGTAVRFEPGe~ktV~LV~igG-~R~V~Gfn 94 (162)
T PRK13205 17 VGREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDIPSGTAVRLEPGDARTVNLVAIGG-DRIVAGFR 94 (162)
T ss_pred CCCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCcccccCCCCeEeECCCCeEEEEEEEccC-ceEEEccC
Confidence 45567999999999999999951 2 345677899999997643 21 35666544
No 25
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=37.07 E-value=55 Score=25.47 Aligned_cols=51 Identities=18% Similarity=0.352 Sum_probs=30.6
Q ss_pred hhccceEEEEEeCCCCceeeee-------e-----------------C-CCceeecCCCeEEEEcCC-CCcceeeeee
Q 027281 20 TLTHAAKFDITNNCPDTVWAAA-------V-----------------P-GGGRQLDKGQTWTITAAP-GTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~-------~-----------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~R 71 (225)
.+-...+|+|+|.-.-+|++|. + | ++..+.+||+++++.+-+ += ..+|+|-
T Consensus 16 ~gr~~~~l~V~N~GDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdIPaGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 92 (100)
T PF00699_consen 16 AGRERITLEVTNTGDRPIQVGSHYHFFEVNPALEFDREAAYGMRLDIPAGTAVRFEPGDTKEVELVPIGG-NRRVYGF 92 (100)
T ss_dssp TTSEEEEEEEEE-SSS-EEEETTS-GGGS-TTEES-HHHHTTEEE-SSTT-EEEE-TT-EEEEEEEE-ST-T-EE-ST
T ss_pred CCCcEEEEEEEeCCCcceEEccccCHHHHhHHhhhhHHHhCCcccCcCCCCeEEECCCCcEEEEEEEccC-CeEEEcC
Confidence 3445789999999999999995 1 2 345677899999997643 21 3566543
No 26
>PHA03094 dUTPase; Provisional
Probab=35.39 E-value=40 Score=27.39 Aligned_cols=29 Identities=10% Similarity=0.015 Sum_probs=23.2
Q ss_pred ceeecCCCeEE------EEcCCCCcceeeeeecccc
Q 027281 46 GRQLDKGQTWT------ITAAPGTKAARIWARTKCQ 75 (225)
Q Consensus 46 g~~L~~G~s~s------~~~p~~w~sGriW~RtgCs 75 (225)
.+.|.||+... +.+|.+| .|.|++|.+-.
T Consensus 35 ~~~i~P~~~~lv~Tg~~i~ip~g~-~g~i~~RSsla 69 (144)
T PHA03094 35 DYTVPPKERILVKTDISLSIPKFC-YGRIAPRSGLS 69 (144)
T ss_pred CeEECCCCEEEEEcCeEEEcCCCE-EEEEEcccccc
Confidence 35788888765 7889999 69999998754
No 27
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=35.23 E-value=1.1e+02 Score=25.07 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=17.7
Q ss_pred eeecCCCeEEEEcCCCCcceeee
Q 027281 47 RQLDKGQTWTITAAPGTKAARIW 69 (225)
Q Consensus 47 ~~L~~G~s~s~~~p~~w~sGriW 69 (225)
..|+||+++++.++..- .|++|
T Consensus 94 ~~I~pGet~TitF~adK-pG~Y~ 115 (135)
T TIGR03096 94 EVIKAGETKTISFKADK-AGAFT 115 (135)
T ss_pred eEECCCCeEEEEEECCC-CEEEE
Confidence 56899999998887665 58886
No 28
>PRK13986 urease subunit alpha; Provisional
Probab=34.96 E-value=79 Score=28.01 Aligned_cols=52 Identities=15% Similarity=0.217 Sum_probs=38.2
Q ss_pred hhccceEEEEEeCCCCceeeeee------------------------C-CCceeecCCCeEEEEcCC-CCcceeeeeec
Q 027281 20 TLTHAAKFDITNNCPDTVWAAAV------------------------P-GGGRQLDKGQTWTITAAP-GTKAARIWART 72 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~~------------------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~Rt 72 (225)
.+-...+++|+|.-.-+|++|.- | ++..+..||+++++++-+ += ..+|+|-.
T Consensus 122 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~n 199 (225)
T PRK13986 122 AGKKAVSVKVKNVGDRPVQVGSHFHFFEVNRCLEFDREKAFGKRLDIASGTAVRFEPGEEKSVELIDIGG-NRRIFGFN 199 (225)
T ss_pred CCCcEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEecCC
Confidence 45567999999999999999951 2 345677899999997643 22 46777654
No 29
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=33.73 E-value=47 Score=23.29 Aligned_cols=24 Identities=33% Similarity=0.710 Sum_probs=16.5
Q ss_pred eeecCCCeEEEEcCCCC----cceeeee
Q 027281 47 RQLDKGQTWTITAAPGT----KAARIWA 70 (225)
Q Consensus 47 ~~L~~G~s~s~~~p~~w----~sGriW~ 70 (225)
|.|.||+..++....+. .+|++|=
T Consensus 2 ~~L~~g~~~~lr~~~~~~l~v~~G~vWl 29 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQRLRVESGRVWL 29 (63)
T ss_pred EEeCCCceEEeEcCCCcEEEEccccEEE
Confidence 67888888877766543 2577774
No 30
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=32.68 E-value=88 Score=27.41 Aligned_cols=51 Identities=22% Similarity=0.321 Sum_probs=36.8
Q ss_pred hhccceEEEEEeCCCCceeeee-------e-----------------C-CCceeecCCCeEEEEcCC-CCcceeeeee
Q 027281 20 TLTHAAKFDITNNCPDTVWAAA-------V-----------------P-GGGRQLDKGQTWTITAAP-GTKAARIWAR 71 (225)
Q Consensus 20 ~~~~~~t~ti~N~C~~tVwp~~-------~-----------------p-~~g~~L~~G~s~s~~~p~-~w~sGriW~R 71 (225)
.+-...+++|+|.-.-+|++|. + | ++..+..||+++++++-+ += ..+|+|-
T Consensus 126 ~gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpAGTavRFEPG~~k~V~LV~~gG-~r~v~G~ 202 (208)
T PRK13192 126 AGRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDIPAGTAVRFEPGETKEVRLVPIGG-ARVVIGF 202 (208)
T ss_pred CCCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCcccccCCCCeEeECCCCeeEEEEEEccC-ceEEEcc
Confidence 3456789999999999999995 1 2 345677899999997643 21 3566654
No 31
>PF12454 Ecm33: GPI-anchored cell wall organization protein
Probab=31.54 E-value=61 Score=21.13 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=7.0
Q ss_pred ceEEEEEeC
Q 027281 24 AAKFDITNN 32 (225)
Q Consensus 24 ~~t~ti~N~ 32 (225)
+.++||.|+
T Consensus 25 ~~t~tI~nQ 33 (40)
T PF12454_consen 25 GGTTTIENQ 33 (40)
T ss_pred CCceeeecc
Confidence 468888886
No 32
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=30.89 E-value=16 Score=30.35 Aligned_cols=10 Identities=40% Similarity=0.637 Sum_probs=7.8
Q ss_pred ccCCcCCcee
Q 027281 123 NIDGFNVPME 132 (225)
Q Consensus 123 lVdG~NlP~~ 132 (225)
+||||||=-.
T Consensus 2 lIDGYNli~~ 11 (166)
T PF05991_consen 2 LIDGYNLIHA 11 (166)
T ss_pred eEcchhhhCC
Confidence 6899998654
No 33
>PF00947 Pico_P2A: Picornavirus core protein 2A; InterPro: IPR000081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This domain defines cysteine peptidases belong to MEROPS peptidase family C3 (picornain, clan PA(C)), subfamilies 3CA and 3CB. The protein fold of this peptidase domain for members of this family resembles that of the serine peptidase, chymotrypsin [], the type example for clan PA. Picornaviral proteins are expressed as a single polyprotein which is cleaved by the viral 3C cysteine protease []. The poliovirus polyprotein is selectively cleaved between the Gln-|-Gly bond. In other picornavirus reactions Glu may be substituted for Gln, and Ser or Thr for Gly. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0016032 viral reproduction; PDB: 2HRV_B 1Z8R_A.
Probab=30.01 E-value=24 Score=28.62 Aligned_cols=17 Identities=53% Similarity=1.331 Sum_probs=13.3
Q ss_pred CCcccccCCCCCceeec
Q 027281 80 GKGKCETGDCNGLLECQ 96 (225)
Q Consensus 80 g~~~C~TGdCgg~~~C~ 96 (225)
|.+.|+-|||||.|.|+
T Consensus 83 g~Gp~~PGdCGg~L~C~ 99 (127)
T PF00947_consen 83 GEGPAEPGDCGGILRCK 99 (127)
T ss_dssp EE-SSSTT-TCSEEEET
T ss_pred ecccCCCCCCCceeEeC
Confidence 45789999999999997
No 34
>cd05468 pVHL von Hippel-Landau (pVHL) tumor suppressor protein. von Hippel-Landau (pVHL) protein, the gene product of VHL, is a critical regulator of the ubiquitous oxygen-sensing pathway. It is conserved throughout evolution, as its homologs are found in organisms ranging from mammals to the Drosophila melanogaster, Anopheles gambiae insects and the Caenorhabditis elegans nematode. pVHL acts as the substrate recognition component of an E3 ubiquitin ligase complex. Several proteins have been identified as pVHL-binding proteins that are subject to ubiquitin-mediated proteolysis; the best characterized putative substrates are the alpha subunits of the hypoxia-inducible factor (HIF1alpha, HIF2alpha, and HIF3alpha). In addition to HIF degradation, pVHL has been implicated to be involved in HIF independent cellular processes. Germline VHL mutations cause renal cell carcinomas, hemangioblastomas and pheochromocytomas in humans. pVHL can bind to and direct the proper deposition of fibronecti
Probab=30.01 E-value=1.1e+02 Score=24.79 Aligned_cols=44 Identities=16% Similarity=0.135 Sum_probs=30.9
Q ss_pred ceEEEEEeCCCCceeeeeeCCCc-----eeecCCCeEEEEcCCCCcceeeeee
Q 027281 24 AAKFDITNNCPDTVWAAAVPGGG-----RQLDKGQTWTITAAPGTKAARIWAR 71 (225)
Q Consensus 24 ~~t~ti~N~C~~tVwp~~~p~~g-----~~L~~G~s~s~~~p~~w~sGriW~R 71 (225)
...|+|+|+.+.+|-+-++--.| ..|+||+.+.+. .+ .|..|=-
T Consensus 8 ~~~v~F~N~t~~~v~~~Wid~~G~~~~Y~~l~pg~~~~~~---Ty-~~H~W~~ 56 (141)
T cd05468 8 PSTVRFVNRTDRPVELYWIDYDGKPVSYGTLQPGETVRQN---TY-VGHPWLF 56 (141)
T ss_pred eEEEEEEeCCCCeEEEEEECCCCCEEEeeeeCCCCEEeec---cc-CCCcEEE
Confidence 47899999999999777764222 469999987553 23 4566643
No 35
>PRK02710 plastocyanin; Provisional
Probab=29.25 E-value=2.1e+02 Score=22.09 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=11.2
Q ss_pred eeeeCCCceeecCCCeEEEE
Q 027281 39 AAAVPGGGRQLDKGQTWTIT 58 (225)
Q Consensus 39 p~~~p~~g~~L~~G~s~s~~ 58 (225)
....| .-..+++|++.++.
T Consensus 42 ~~F~P-~~i~v~~Gd~V~~~ 60 (119)
T PRK02710 42 LAFEP-STLTIKAGDTVKWV 60 (119)
T ss_pred eEEeC-CEEEEcCCCEEEEE
Confidence 34444 24577788876664
No 36
>PLN00115 pollen allergen group 3; Provisional
Probab=27.72 E-value=66 Score=25.64 Aligned_cols=65 Identities=11% Similarity=0.178 Sum_probs=29.2
Q ss_pred CcccchhHHHHHHHHHHHhhhc--cceEEEEEeCCCCceeeeeeCCCc---eeecCCC--eEEEEcCCCCcceeee
Q 027281 1 MKFVKALPISSALLIIISITLT--HAAKFDITNNCPDTVWAAAVPGGG---RQLDKGQ--TWTITAAPGTKAARIW 69 (225)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~--~~~t~ti~N~C~~tVwp~~~p~~g---~~L~~G~--s~s~~~p~~w~sGriW 69 (225)
|++++.|. ..+.++++++.+. ...+|+|.-.- .+-|..++.+++ .+|+..+ .|...+-..| |.+|
T Consensus 1 ~~~~~~~~-~~~~~a~l~~~~~~g~~v~F~V~~gS-np~yL~ll~~~dI~~V~Ik~~g~~~W~~~M~rsw--GavW 72 (118)
T PLN00115 1 MSSLSFLL-LAVALAALFAVGSCATEVTFKVGKGS-SSTSLELVTNVAISEVEIKEKGAKDWVDDLKESS--TNTW 72 (118)
T ss_pred CchhHHHH-HHHHHHHHhhhhhcCCceEEEECCCC-CcceEEEEEeCCEEEEEEeecCCCcccCccccCc--ccee
Confidence 56654432 2233344444333 35677776545 244555543322 2333322 2221344456 7777
No 37
>PF13978 DUF4223: Protein of unknown function (DUF4223)
Probab=27.47 E-value=81 Score=21.81 Aligned_cols=23 Identities=17% Similarity=0.163 Sum_probs=17.2
Q ss_pred hhhccceEEEEEeCCCCce--eeee
Q 027281 19 ITLTHAAKFDITNNCPDTV--WAAA 41 (225)
Q Consensus 19 ~~~~~~~t~ti~N~C~~tV--wp~~ 41 (225)
+++-.++..+=.|+|+|+- .|++
T Consensus 17 Lt~CTG~v~Nk~knCsYDYllHPAi 41 (56)
T PF13978_consen 17 LTACTGHVENKEKNCSYDYLLHPAI 41 (56)
T ss_pred HhhccceeeccCCCCcceeeecchh
Confidence 4566778888899999874 5554
No 38
>PRK01904 hypothetical protein; Provisional
Probab=25.48 E-value=51 Score=28.65 Aligned_cols=15 Identities=20% Similarity=0.215 Sum_probs=8.9
Q ss_pred HhhhccceEEEEEeC
Q 027281 18 SITLTHAAKFDITNN 32 (225)
Q Consensus 18 ~~~~~~~~t~ti~N~ 32 (225)
+.+.+.+.+|++-.+
T Consensus 15 ~s~~a~A~tL~lp~~ 29 (219)
T PRK01904 15 TSTASFAGMVTTSSN 29 (219)
T ss_pred HhHHhhHheeeCCCc
Confidence 334555567777665
No 39
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=23.63 E-value=98 Score=25.84 Aligned_cols=14 Identities=21% Similarity=0.135 Sum_probs=7.8
Q ss_pred cceeccccCCcCCc
Q 027281 117 DFIDMSNIDGFNVP 130 (225)
Q Consensus 117 d~YDvSlVdG~NlP 130 (225)
.+|.++.++-..+|
T Consensus 117 ~~~~~~~~~~p~ip 130 (212)
T PF11912_consen 117 YYYISSCSDNPYIP 130 (212)
T ss_pred eEEEEEEecCCcCC
Confidence 35566666654444
No 40
>PF07385 DUF1498: Protein of unknown function (DUF1498); InterPro: IPR010864 This family consists of several hypothetical bacterial proteins of around 225 residues in length. The function of this family is unknown.; PDB: 3MPB_B 3KMH_A.
Probab=23.47 E-value=83 Score=27.91 Aligned_cols=26 Identities=19% Similarity=0.357 Sum_probs=15.1
Q ss_pred CCceeecCCCeEEEEcCCCCcceeeeeec
Q 027281 44 GGGRQLDKGQTWTITAAPGTKAARIWART 72 (225)
Q Consensus 44 ~~g~~L~~G~s~s~~~p~~w~sGriW~Rt 72 (225)
++-.+|.||+|.++. |..| -+|||..
T Consensus 153 G~~l~L~PGESiTL~-Pg~y--H~Fw~e~ 178 (225)
T PF07385_consen 153 GTQLRLNPGESITLP-PGIY--HWFWGEG 178 (225)
T ss_dssp T-EEEE-TT-EEEE--TTEE--EEEEE-T
T ss_pred CceEEeCCCCeEeeC-CCCe--eeEEecC
Confidence 445789999976653 4446 7999875
No 41
>cd07557 trimeric_dUTPase Trimeric dUTP diphosphatases. Trimeric dUTP diphosphatases, or dUTPases, are the most common family of dUTPase, found in bacteria, eukaryotes, and archaea. They catalyze the hydrolysis of the dUTP-Mg complex (dUTP-Mg) into dUMP and pyrophosphate. This reaction is crucial for the preservation of chromosomal integrity as it removes dUTP and therefore reduces the cellular dUTP/dTTP ratio, and prevents dUTP from being incorporated into DNA. It also provides dUMP as the precursor for dTTP synthesis via the thymidylate synthase pathway. dUTPases are homotrimeric, except some monomeric viral dUTPases, which have been shown to mimic a trimer. Active sites are located at the subunit interface.
Probab=22.27 E-value=1.1e+02 Score=22.00 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=20.3
Q ss_pred ceeecCCCeE------EEEcCCCCcceeeeeeccc
Q 027281 46 GRQLDKGQTW------TITAAPGTKAARIWARTKC 74 (225)
Q Consensus 46 g~~L~~G~s~------s~~~p~~w~sGriW~RtgC 74 (225)
.+.|.|++.. .+.+|+++ .|.|++|.+-
T Consensus 13 ~~~i~P~~~~~v~t~~~i~~p~~~-~~~i~~RSs~ 46 (92)
T cd07557 13 GIVLPPGETVLVPTGEAIELPEGY-VGLVFPRSSL 46 (92)
T ss_pred CEEEcCCCEEEEEEeEEEEcCCCe-EEEEEcCchh
Confidence 3667777654 45678898 7999999764
No 42
>PF12099 DUF3575: Protein of unknown function (DUF3575); InterPro: IPR021958 This family of proteins are functionally uncharacterised. This family is only found in bacteria. Proteins in this family are typically between 187 to 236 amino acids in length.
Probab=21.49 E-value=67 Score=27.27 Aligned_cols=38 Identities=24% Similarity=0.513 Sum_probs=25.7
Q ss_pred ccceEEEEEeCCCCceeeeeeCCCceeecCCCeEEEEcCC
Q 027281 22 THAAKFDITNNCPDTVWAAAVPGGGRQLDKGQTWTITAAP 61 (225)
Q Consensus 22 ~~~~t~ti~N~C~~tVwp~~~p~~g~~L~~G~s~s~~~p~ 61 (225)
+.+..+.|+.|=-+ |....|+-|.+..-+..+|+.++.
T Consensus 22 ~~~q~~avKtN~l~--~~~~tpNlg~E~~l~~~~Sl~l~~ 59 (189)
T PF12099_consen 22 ARAQKVAVKTNLLY--WATGTPNLGVEFALGNRWSLDLSG 59 (189)
T ss_pred ccceEEEEEeHHhH--HHHhCCceEEEEEECCCEEEEEEE
Confidence 45677888776443 555567767777777777887764
No 43
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=21.01 E-value=1.8e+02 Score=19.84 Aligned_cols=13 Identities=23% Similarity=0.393 Sum_probs=9.6
Q ss_pred cceEEEEEeCCCCc
Q 027281 23 HAAKFDITNNCPDT 36 (225)
Q Consensus 23 ~~~t~ti~N~C~~t 36 (225)
++..++|.| |.++
T Consensus 32 tGeSv~I~g-C~~~ 44 (59)
T PF02495_consen 32 TGESVTISG-CEFT 44 (59)
T ss_pred eCcEEEEEC-CCCC
Confidence 467888888 8754
Done!