BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 027282
(225 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 196 bits (497), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 107/158 (67%), Positives = 124/158 (78%), Gaps = 4/158 (2%)
Query: 66 AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
AV RR +M L++S I S TA A V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct: 76 AVGRRKSMMMGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGA 133
Query: 124 GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
GADIF+RDP VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct: 134 GADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193
Query: 184 RESNILSTSSRVADDGRLYYLVEHVLKIHMPSGEHKVI 221
R++NILSTSSRVADDG+LYY VE +K + + E V+
Sbjct: 194 RQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVM 231
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 1 MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM 60
MA+M+M+Q Q P FS+LTS+LS FNGA LH QV+ +++ P+ AL+V+AS+EKK +M
Sbjct: 1 MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 61 AATQF 65
T+F
Sbjct: 60 GGTRF 64
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 48.1 bits (113), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 11/118 (9%)
Query: 93 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 152
A+ GF D D Y+F YP W +V G D Y+D E+VSV L P+S +
Sbjct: 75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131
Query: 153 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEHVLK 210
++++ GPPK+ ++++ L + L +S DG+ YY E ++
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTVQ 181
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 37.4 bits (85), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 50/112 (44%), Gaps = 11/112 (9%)
Query: 99 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLG 158
+ ++D DGYS+ YP +W + D ++D Y+ +NV V + + ++G
Sbjct: 88 YSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVG 144
Query: 159 PPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEHVLK 210
P +E +++ + + I RV +DG+ YY E+ L+
Sbjct: 145 PMEEVVYDLVKHKFA-------APNQVATIYDMKERV-EDGKNYYTFEYGLR 188
>sp|P82796|TL22_SPIOL Thylakoid lumenal 22 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 20
Score = 36.6 bits (83), Expect = 0.14, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 94 QQSVGFREYIDTFDGYSFKY 113
+QS GFREYID FDGYS Y
Sbjct: 1 EQSAGFREYIDFFDGYSLTY 20
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 73 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 132
+ L + + F+ F N A + + + + Y D+ +G++ P ++ +V AGA+ + +
Sbjct: 51 LNLSILTLFFNGFLLDNKAKSMEEL--QRYTDSNNGFTLLIPSSYTKVEKAGANALFEEL 108
Query: 133 YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 192
N+ V + S R KS++ G P+ K++ R +E+ ++S
Sbjct: 109 NNGSNNIGVVV---SPVRIKSLDQFGSPQFVADKLIN------AEKRKESTKEAEVVSVG 159
Query: 193 SRVADDGRLY 202
R ++Y
Sbjct: 160 ERAGLGQQVY 169
>sp|Q5NVA9|EME1_PONAB Crossover junction endonuclease EME1 OS=Pongo abelii GN=EME1 PE=3
SV=1
Length = 575
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 84/207 (40%), Gaps = 18/207 (8%)
Query: 14 CFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVMAATQFAVPRRNAM 73
CFS G GA+ ++ +QQ+Q P ++ S + Q A
Sbjct: 374 CFSAQNPPRRGKQGANKQTKEKQQRQ---PEASIGSMVSRVDAEEALVDLQLHT---EAQ 427
Query: 74 ALILSSYI-FSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNW-----IQVRGAGADI 127
A I+ S+ +DF T A V F++ D +SF +W + G G +
Sbjct: 428 AQIVQSWKELADFTCAFTK-AVAEVPFKKLRDET-TFSFCVESDWAGGVKVDRAGRGLAL 485
Query: 128 FYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN 187
+R VS+E++S + Y S + L +A R+ + + + + VRR
Sbjct: 486 VWRRQIQQLNRVSLEMASAVVNAYPSPQLL---VQAYRQCFSEQERQNLLADIQVRRGEG 542
Query: 188 ILSTSSRVADD-GRLYYLVEHVLKIHM 213
+ STS RV + R YL L+ H+
Sbjct: 543 VTSTSRRVGPELSRRIYLQMTTLQPHL 569
>sp|Q08225|DPP3_YEAST Probable dipeptidyl peptidase 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YOL057W PE=1 SV=1
Length = 711
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 2 ARMVMMQ--HQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPV 59
+R+VM Q H++ P F ++ + S NG + Q+QQT L E + SN
Sbjct: 44 SRVVMRQVSHESEPIFDLILAIHSKLNGKYPEDDITQKQQTGLYLEYVSQFLSNLGNFKS 103
Query: 60 MAATQFAVPR 69
T+F +PR
Sbjct: 104 FGDTKF-IPR 112
>sp|Q59S63|PUS1_CANAL tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PUS1 PE=3 SV=1
Length = 450
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 57 NPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQN 116
N +T+ +P+ A+ L+L + +F + + T + + F ++ + + KY +
Sbjct: 309 NNFFQSTKINIPKAPALGLLLENPVFDGYNIKLTKSDYEPIDFTKFDKEMNEFKMKYIYD 368
Query: 117 WIQVRGAGADIFY 129
I + +IFY
Sbjct: 369 KIYAEESKENIFY 381
>sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2
SV=1
Length = 156
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 6 MMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALH 48
M + QT S+LT T G GASL + ++ Q P R+A+
Sbjct: 63 MSEEQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMR 105
>sp|Q0W4I8|GLMM_UNCMA Probable phosphoglucosamine mutase OS=Uncultured methanogenic
archaeon RC-I GN=glmM PE=3 SV=1
Length = 438
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 103 IDTFDGYSFKYPQNWIQVRGAGADIFYR-DPYVLDENVSVELSSPSSSRYKSVED 156
I+T DG +YP+ W+ +R +G + R +DE + +L S + S K D
Sbjct: 380 INTLDGVRVEYPEGWVLIRPSGTEPKIRITAEAVDEGAAEKLYSQAESIVKRCID 434
>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
thaliana GN=PPD3 PE=1 SV=2
Length = 247
Score = 30.8 bits (68), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 51 ASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNT-ALAQQSVGFREYIDTFDGY 109
+SNE+++ + + + RR+ M I SS F A S FR Y D + +
Sbjct: 39 SSNEEQHRISSRDHVGMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKF 98
Query: 110 SFKYPQNW 117
PQ+W
Sbjct: 99 EISIPQDW 106
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,841,520
Number of Sequences: 539616
Number of extensions: 3056585
Number of successful extensions: 7439
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 7430
Number of HSP's gapped (non-prelim): 14
length of query: 225
length of database: 191,569,459
effective HSP length: 113
effective length of query: 112
effective length of database: 130,592,851
effective search space: 14626399312
effective search space used: 14626399312
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)