Your job contains 1 sequence.
>027283
MKRFFKPIEKECSAKKPALSPSKKDGETTETSSEENSKKDPLKFVTWNANSLLLRVKNNW
PEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPPF
KNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNT
YAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVR
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 027283
(225 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 807 2.2e-80 1
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 333 1.9e-29 1
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 333 1.9e-29 1
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 187 9.2e-19 2
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 186 1.2e-17 2
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 159 8.9e-17 2
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 189 1.2e-16 2
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 189 1.2e-14 1
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 186 2.8e-14 1
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 183 3.0e-14 1
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 185 3.7e-14 1
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 185 3.7e-14 1
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 184 4.8e-14 1
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 184 4.8e-14 1
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 183 6.2e-14 1
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 148 7.7e-14 2
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 179 1.8e-13 1
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 162 2.9e-13 2
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 159 3.8e-13 2
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 176 3.9e-13 1
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 142 1.2e-12 2
UNIPROTKB|G3V359 - symbol:APEX1 "DNA-(apurinic or apyrimi... 133 5.9e-09 1
UNIPROTKB|G3V5M0 - symbol:APEX1 "DNA-(apurinic or apyrimi... 128 2.0e-08 1
UNIPROTKB|G3V3C7 - symbol:APEX1 "DNA-(apurinic or apyrimi... 124 2.3e-07 1
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 79 6.9e-05 2
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 75 0.00079 2
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 807 (289.1 bits), Expect = 2.2e-80, P = 2.2e-80
Identities = 154/225 (68%), Positives = 173/225 (76%)
Query: 1 MKRFFKPIEKECXXXXXXXXXX-XXXXXXXXXXXXXXXXXDPLKFVTWNANSLLLRVKNN 59
MKRFFKPIEKE +P KF+TWNANS LLRVKN+
Sbjct: 1 MKRFFKPIEKENSPAAKKPCLSPEKRDGDGDGVEEEKNQNEPSKFMTWNANSFLLRVKND 60
Query: 60 WPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQELKDDTKASREEKLILMRALSSPP 119
W +FS F++ FDPDVIA+QEVRMPAAG K PKNH+EL DDTK REEK IL RALSSPP
Sbjct: 61 WSQFSKFVSDFDPDVIAIQEVRMPAAGGKGKPKNHEELSDDTKVLREEKQILTRALSSPP 120
Query: 120 FKNYQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
F NY +WWSLADSKYAGTALLVKKCF+P+KV F+L+K A K+EPDGRVILAEFETF LLN
Sbjct: 121 FGNYGVWWSLADSKYAGTALLVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLN 180
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 224
TY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLIWCGDLNV
Sbjct: 181 TYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLIWCGDLNV 225
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 333 (122.3 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 77/199 (38%), Positives = 117/199 (58%)
Query: 45 VTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQE 96
VTWN NS+ +R KN W EF NF + DV+ QEVR+PA +K+ KN +
Sbjct: 281 VTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDNKNKNKNKND 340
Query: 97 -LKDDTKASR-EEKLI----LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 150
++D K ++K + +M + + FK+Y ++SLA+ KY+G +LVKK + +
Sbjct: 341 GIRDRGKIKNSDQKSLADYEIMEQILNDDFKDYNAYFSLANIKYSGQLVLVKKNIHIESI 400
Query: 151 SFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
++L E A + +GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV
Sbjct: 401 RYNLFFENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFV 458
Query: 209 LQCSG---KPLIWCGDLNV 224
KPL+W GDLN+
Sbjct: 459 TILRNEKQKPLVWTGDLNI 477
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 333 (122.3 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 77/199 (38%), Positives = 117/199 (58%)
Query: 45 VTWNANSLLLRVKNN--WPEFSNFITTFDPDVIALQEVRMPAAG------SKDAPKNHQE 96
VTWN NS+ +R KN W EF NF + DV+ QEVR+PA +K+ KN +
Sbjct: 281 VTWNMNSITVRYKNKKKWDEFMNFFNNLNADVLCFQEVRLPAMNLSEPCDNKNKNKNKND 340
Query: 97 -LKDDTKASR-EEKLI----LMRALSSPPFKNYQIWWSLADSKYAGTALLVKKCFQPKKV 150
++D K ++K + +M + + FK+Y ++SLA+ KY+G +LVKK + +
Sbjct: 341 GIRDRGKIKNSDQKSLADYEIMEQILNDDFKDYNAYFSLANIKYSGQLVLVKKNIHIESI 400
Query: 151 SFSL--EKTALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 208
++L E A + +GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV
Sbjct: 401 RYNLFFENNAHIHHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFV 458
Query: 209 LQCSG---KPLIWCGDLNV 224
KPL+W GDLN+
Sbjct: 459 TILRNEKQKPLVWTGDLNI 477
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 187 (70.9 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 40/106 (37%), Positives = 64/106 (60%)
Query: 121 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
K Y+ + AD K + GT +L KK +P ++F + K++ +GRVI E++ FY++N
Sbjct: 154 KGYEYHFIEADQKGHHGTGVLTKK--KPNAITFGIG--IAKHDNEGRVITLEYDQFYIVN 209
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNV 224
TY PN G + + R ++WD Q ++ + + KP+IWCGDLNV
Sbjct: 210 TYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNATKPIIWCGDLNV 255
Score = 62 (26.9 bits), Expect = 9.2e-19, Sum P(2) = 9.2e-19
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM-PAAGSKDA-PKNHQ 95
+K ++WN + F+ ++ +PDV+ LQE ++ P+ KD PK ++
Sbjct: 105 MKIISWNVAGFKSVLSKG---FTEYVEKENPDVLCLQETKINPSNIKKDQMPKGYE 157
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 186 (70.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 48/127 (37%), Positives = 73/127 (57%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 95 ETKCS-ENKL--PAELQDLPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 148
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF++F L+ Y PN G + R++WDK +F+ S KPL+
Sbjct: 149 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDKAFCKFLKDLASRKPLV 205
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 206 LCGDLNV 212
Score = 48 (22.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
LK +WN + L +K ++ + PD++ LQE +
Sbjct: 61 LKICSWNVDGLRAWIKKKGLDW---VKEEAPDILCLQETK 97
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 159 (61.0 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 36/106 (33%), Positives = 60/106 (56%)
Query: 121 KNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLN 179
+ Y +W+ A K Y+GTA+ KK +P V++ L +++ +GRVI EFE FY++
Sbjct: 49 EGYYTYWNYAVKKGYSGTAIFSKK--EPLSVTYGLGIE--EHDQEGRVITLEFEDFYIIT 104
Query: 180 TYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNV 224
Y PN+ K + R KW+ + ++ + K +++CGDLNV
Sbjct: 105 LYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVFCGDLNV 148
Score = 62 (26.9 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRM 82
+KF++WN N L + F ++ + D+ LQE+++
Sbjct: 1 MKFISWNVNGLRAVIAKGG--FLEYLEESNADIFCLQEIKL 39
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 189 (71.6 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 48/127 (37%), Positives = 74/127 (58%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 95 ETKCS-ENKL--PAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 148
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 -EHDQEGRVIVAEFESFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLV 205
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 206 LCGDLNV 212
Score = 35 (17.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 82 MPAAGSKDAPKNHQELKDD--TKASR 105
MP G K A + +E K + TK S+
Sbjct: 1 MPKRGKKAAADDGEEPKSEPETKKSK 26
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 189 (71.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 48/127 (37%), Positives = 74/127 (58%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 95 ETKCS-ENKL--PAELQELPGLTHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 148
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 -EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLV 205
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 206 LCGDLNV 212
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 186 (70.5 bits), Expect = 2.8e-14, P = 2.8e-14
Identities = 48/127 (37%), Positives = 74/127 (58%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P +Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLPHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF+TF L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDTFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 47/127 (37%), Positives = 74/127 (58%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 185 (70.2 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 47/127 (37%), Positives = 75/127 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 185 (70.2 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 47/127 (37%), Positives = 75/127 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 184 (69.8 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 49/128 (38%), Positives = 73/128 (57%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK--YAGTALLVKKCFQPKKVSFSLEKT 157
+TK S E KL L P +YQ +WS K Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSYQ-YWSAPXXKEGYSGVGLLSRQC--PLKVSYGIGEE 149
Query: 158 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPL 216
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL
Sbjct: 150 --EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPL 205
Query: 217 IWCGDLNV 224
+ CGDLNV
Sbjct: 206 VLCGDLNV 213
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 184 (69.8 bits), Expect = 4.8e-14, P = 4.8e-14
Identities = 47/127 (37%), Positives = 74/127 (58%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 183 (69.5 bits), Expect = 6.2e-14, P = 6.2e-14
Identities = 47/127 (37%), Positives = 74/127 (58%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 148 (57.2 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 40/109 (36%), Positives = 60/109 (55%)
Query: 120 FKNYQIWWSLADSK---YAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFY 176
FKNY ++ K YAG LL KC P KV + +++ GR+I+AEF FY
Sbjct: 82 FKNYTKTLVVSTEKNGGYAGVGLL-SKC-APMKVHKGIGDP--EFDTAGRLIIAEFSKFY 137
Query: 177 LLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLNV 224
+ Y PN+G K + ++R +W+K + E + + K P+I+ GDLNV
Sbjct: 138 FIGAYVPNSGAKLV--NLEKRGRWEKLLTEKMKEMDEKKPVIYGGDLNV 184
Score = 52 (23.4 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 19/61 (31%), Positives = 29/61 (47%)
Query: 43 KFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVRMPAAGSKDAPKNHQE-LKDDT 101
KFV WN L VK + +F + +PD++ L E + K+ P +E K+ T
Sbjct: 35 KFVCWNVAGLRACVKKS--DFKEVLAE-EPDLVFLGETKC-----KEWPPEMEETFKNYT 86
Query: 102 K 102
K
Sbjct: 87 K 87
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 179 (68.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 43/127 (33%), Positives = 75/127 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S + + ++ LS ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCSENKLPVELQELSG---LSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGEE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 -EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLV 206
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 207 LCGDLNV 213
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 162 (62.1 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 123 YQIWWSLADSKYAGTALLVKKCFQPKKVSFSLEKTALKYEPDGRVILAEFETFYLLNTYA 182
Y +W YAG A+ K P V + + +++ GR+I AE+E FYL+N Y
Sbjct: 479 YHPYWLCMPGGYAGVAIYSK--IMPIHVEYGIGNE--EFDDVGRMITAEYEKFYLINVYV 534
Query: 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLNV 224
PN+G K + + R +W+K Q +V + KP++ CGD+NV
Sbjct: 535 PNSGRKLV--NLEPRMRWEKLFQAYVKKLDALKPVVICGDMNV 575
Score = 46 (21.3 bits), Expect = 2.9e-13, Sum P(2) = 2.9e-13
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
LK +WN L +K + + I +PD+ LQE +
Sbjct: 427 LKICSWNVAGLRAWLKKDGLQL---IDLEEPDIFCLQETK 463
Score = 36 (17.7 bits), Expect = 3.2e-12, Sum P(2) = 3.2e-12
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 76 ALQEVRMPAAGSKDAPKNHQELKDDTKASREEKL 109
A +E+++PA G P+ + K A E++
Sbjct: 37 AAEELKVPAKGK---PRARKATKTAVSAENSEEV 67
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 159 (61.0 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 36/102 (35%), Positives = 62/102 (60%)
Query: 126 WWSLADSK--YAGTALLVKKCFQPKKVSFSLEKTALK-YEPDGRVILAEFETFYLLNTYA 182
+WS + SK Y+GTA++ + +P V + T L ++ +GR++ AEF++FYL+NTY
Sbjct: 336 FWSCSVSKLGYSGTAIISR--IKPLSVRYG---TGLSGHDTEGRIVTAEFDSFYLINTYV 390
Query: 183 PNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 223
PN+G + S+ R +WD+ + + + KP++ GDLN
Sbjct: 391 PNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLTGDLN 431
Score = 45 (20.9 bits), Expect = 3.8e-13, Sum P(2) = 3.8e-13
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFS--NFITTFDPDVIALQEVRMPAAGSKDAPK 92
+K +TWN N L +K + FS + D++ LQE ++ ++ K
Sbjct: 276 VKVMTWNVNGLRGLLK--FESFSALQLAQRENFDILCLQETKLQVKDVEEIKK 326
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 176 (67.0 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 44/127 (34%), Positives = 73/127 (57%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S + ++ LS P +Q W + +D + Y+G LL ++C KVS+ + +
Sbjct: 96 ETKCSENKLPAELQELSGLP---HQYWSAPSDKEGYSGVGLLSRQCL---KVSYGIGEE- 148
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLI 217
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 -EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASHKPLV 205
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 206 LCGDLNV 212
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 142 (55.0 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 39/127 (30%), Positives = 64/127 (50%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK + EK + P + ++ W D + Y+G A+L K +P V++ + K
Sbjct: 89 ETKCA--EKALPADITGMPEYP-HKYWAGSEDKEGYSGVAMLCKT--EPLNVTYGIGKE- 142
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLI 217
+++ +GRVI AEF F+L+ Y PN + R+ WD + ++ KPL+
Sbjct: 143 -EHDKEGRVITAEFPDFFLVTAYVPNASRGLVRLDY--RKTWDVDFRAYLCGLDARKPLV 199
Query: 218 WCGDLNV 224
CGDLNV
Sbjct: 200 LCGDLNV 206
Score = 62 (26.9 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 42 LKFVTWNANSLLLRVKNNWPEFSNFITTFDPDVIALQEVR 81
+K +WN + L VK N ++ + DPD++ LQE +
Sbjct: 55 MKITSWNVDGLRAWVKKNGLDW---VRKEDPDILCLQETK 91
>UNIPROTKB|G3V359 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V359 SMR:G3V359
Ensembl:ENST00000557592 ArrayExpress:G3V359 Bgee:G3V359
Uniprot:G3V359
Length = 172
Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 36/103 (34%), Positives = 58/103 (56%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 79 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE- 132
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 201
+++ +GRVI+AEF++F L+ Y PN G + R++WD
Sbjct: 133 -EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWD 172
>UNIPROTKB|G3V5M0 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V5M0 SMR:G3V5M0
Ensembl:ENST00000557150 ArrayExpress:G3V5M0 Bgee:G3V5M0
Uniprot:G3V5M0
Length = 162
Score = 128 (50.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 33/88 (37%), Positives = 52/88 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 79 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE- 132
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPNNG 186
+++ +GRVI+AEF++F L+ Y PN G
Sbjct: 133 -EHDQEGRVIVAEFDSFVLVTAYVPNAG 159
>UNIPROTKB|G3V3C7 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0003677 GO:GO:0006281
GO:GO:0090305 GO:GO:0045454 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:G3V3C7 SMR:G3V3C7
Ensembl:ENST00000556054 ArrayExpress:G3V3C7 Bgee:G3V3C7
Uniprot:G3V3C7
Length = 174
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 32/86 (37%), Positives = 51/86 (59%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGDE- 149
Query: 159 LKYEPDGRVILAEFETFYLLNTYAPN 184
+++ +GRVI+AEF++F L+ Y PN
Sbjct: 150 -EHDQEGRVIVAEFDSFVLVTAYVPN 174
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 79 (32.9 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 18/45 (40%), Positives = 26/45 (57%)
Query: 181 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNV 224
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV
Sbjct: 98 YVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNV 140
Score = 65 (27.9 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 20/56 (35%), Positives = 31/56 (55%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSL 154
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ +
Sbjct: 46 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGI 96
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 75 (31.5 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 197 RRKWDKRIQEFVLQ-CSGKPLIWCGDLNV 224
R++WD+ ++F+ S KPL+ CGDLNV
Sbjct: 156 RQRWDEAFRKFLKGLASRKPLVLCGDLNV 184
Score = 69 (29.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 100 DTKASREEKLILMRALSSPPFKNYQIWWSLADSK-YAGTALLVKKCFQPKKVSFSLEKTA 158
+TK S E KL L P ++Q W + +D + Y+G LL ++C P KVS+ + +
Sbjct: 96 ETKCS-ENKL--PAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQC--PLKVSYGIGRGL 150
Query: 159 LKYE 162
++ E
Sbjct: 151 VRLE 154
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 225 198 0.00083 111 3 11 22 0.47 32
31 0.45 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 26
No. of states in DFA: 612 (65 KB)
Total size of DFA: 194 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 20.92u 0.13s 21.05t Elapsed: 00:00:01
Total cpu time: 20.93u 0.13s 21.06t Elapsed: 00:00:01
Start: Fri May 10 08:19:32 2013 End: Fri May 10 08:19:33 2013